Citrus Sinensis ID: 001366

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090--
Protein Sequence
MDDMDEGVGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQILADMLEGKSVNRIVSPMDASENPCPHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERISTRHDRWQHLYQLGSGSGSGSSRGDRGHGRTMLGAWEDVGDTSLHDFITQKPLNDEHNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccEEEEccccccHHHHHccccccccccccccccHHHHHHcccccccccccccccccccEEEEcccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccEEEEcccccccHHcccccccccccHHHHHcccHHHHHccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHcccccccccccccccHHHHHHccccccHHHHHHHHHHHHHcccccHHHccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccEEEEEccccEEEEccccccccccccccccccccEEEccccccccccccccccccccEEEEEEEccEEccEEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccEEEcccccEEEEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccccEEEEEEccccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEccccEEEEEcccccEEEEccccccccccccccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEcccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHccccccEEcccccHHHHHcccEEEEccccccccccccccccccccccEEEEcccccccccccccccccccEEEEEEEEcccccccEEEEccccccccccccccHHHHHEcccccccccccccccccccccHHHHHccccccHHHHHccccccccccHHHHHHccccccccccccccccccccEEcccccccccHHHccccccEEEccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEcccccEEEEccccccccccccccccccHcccccEEcccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccEEccccccccccccccccHHccccccccHHHHHHHHHHHcccHHHHcccccccHHHHHHHHEEEEEHccccccHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccEEEcccccccccccccccccccEEEEccccccEEEEcccccEEEEccccccccccEEEccccEEEEEEEcccccccccccccccccccEEEEEcccEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEEEccccccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccccEEcccccccEEEEEEEcccccEEEEEcccccEEEEEEc
Coil and Loop (DISEMBL)
mddmdegvgevapvnaaegaplqnkeieyslrpescnnvlesgemaipegtssdgsFQILADMLegksvnrivspmdasenpcphsdsdagIMVEELTVrksnssnlaivgtsnhreriSTRHDRWQHLYqlgsgsgsgssrgdrghgrtmlgawedvgdtslhdfitqkplndehntileqsantendglsgnmlshgsirtkmlsksgfseFFVKTTLkgkgivcrgpplnafkerrgmidtkafvtttmPSDAALKAAGAMMvasnaspkpvgVGTAVVsngsldlgartgvpascwigglrqgssdhgvNLREWLNarghkgkriECLYIFRQIVALVDYhhtqgvtfldlkpssfkllqsnqvkyigpiiqketlesasldiphsenyrlrRRSAEEEMFTTGIASAKkqkfnhnmnfsrwwslfpskygnkietanesdinevsiphshndtnehhtnagfgnysksssplvsntaqQQSTSVSEQLeekwyaspeelsggvcttssniysLGVLFFELFGRFDSERALAAAMSDLrdrilppsflsenpkeaGFCLwqlhpeplsrpttrEILQSEVTNEFQEVCAEELLssidqddsESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHylkkplvdpslqnesapsrenryfneqlssseaqlspisdanEMRLMRNLNQLERAYFSMRsqiqlsdsdsttradnDLLRDRENLFLAQqdqeiqnptdRLGAFFDGLCKYARYSKFEVQGMlrtgefnnsanvicsisfdrdedhfAAAGVSKKIKIFEFNalfndsvdvyypavemsnrsklscVCWNNYIKNYLASADYDGVVKLWdactgqtvSHYIEHekrawsvdfsqvhptklasgsddcsvkLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYdlrnarapwcvlAGHEKAVSYVKFldsgtlvtastdnklklwdlkrtshtgpstnacsltfsghtneknfvglstadgyiacgsesnevyayhrslpmpitsykfgsidpisgketdddnglfvSSVCWRRRSDMVVAANSSGCIKVLQMV
Flexible Loop (DISEMBL)
MDDMDEGVGEvapvnaaegaplqnkeieyslRPESCNNVLESGEMAIPEGTSSDGSFQILADMLEGKSVNRIVSPMDASENPCPHSDSDAGIMVEELTVrksnssnlaivgtsnhrerisTRHDRWQHLYQlgsgsgsgssrgDRGHGRTMLGAWEDVGDTSLHDFITQKPLNDEHNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKttlkgkgivcrgpplnafkerrgMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKetlesasldiphsenYRLRRRSAEEEMFTTGiasakkqkfnhNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYAspeelsggvcTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERrhylkkplvdpslqnesapSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMrsqiqlsdsdsttrADNDLLRDRENLFLaqqdqeiqnptDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTklasgsddcsvKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFldsgtlvtastdnklklwdlkrtshtgpstnacslTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPIsgketdddnGLFVSSVCWRRRSDMvvaanssgcikvlqmv
Low Complexity Region (SEG)
MDDMDEGVGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQILADMLEGKSVNRIVSPMDASENPCPHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERISTRHDRWQHLYQLgsgsgsgssrgdrghgrTMLGAWEDVGDTSLHDFITQKPLNDEHNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDaalkaagammvaSNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV
Disordered region (IsUnstruct)
*******************************************************************************************************************************************************LGAWEDVGDTSLHDFIT****************************************SGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM**********************VGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET************************************KFNHNMNFSRWWSLFPSKYGNK******************************************************************LSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFL****KEAGFCLWQLHP****************TNEFQEVCAEEL************LLLHFLISL*******************************************************************************************************************************TDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSH****TNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVL***
Disordered Region (DISOPRED)
**************************************************TSSDGSFQILADMLEGK**************************VEELTVRKSNSSN*******************WQHLYQ*************************************************************************************KTTLKGKGIVCRGPPL********************************************************************************VNLREWLNAR***GKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIG************************************************************************************************************************LEEKWYA**EEL*****TTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVC***********DSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLK**********************************ISDANEMRLMRNLNQLERAYFSM*S***********RADNDLLRDRENLFLAQQD**********GAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV
Disordered Region (DISEMBL)
*********EVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQILADMLEGKSVNRIVSPMD*********DSDAGIMVEELTVRKSNSSNLAIVGTSNHRERISTRHDRWQHLYQLG**************GRTMLGAWEDVGDTSLHDFITQKPLNDEHNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYS***********************EKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQ***********ADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV
Disordered Region (DISPRO)
******GVGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQILADMLEGKSVNRIVSPMDASENPCPHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERISTRHDRWQHLYQLGSG****************************H********************************SHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKE****************************************************GARTGVPASCW*********DHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI**********************************************************************************DTN**H**********SSSP*******QQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVDPSLQNESAPSRENRYFNE**SSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDMDEGVGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQILADMLEGKSVNRIVSPMDASENPCPHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERISTRHDRWQHLYQLGSGSGSGSSRGDRGHGRTMLGAWEDVGDTSLHDFITQKPLNDEHNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDDSESELLLHFLISLxxxxxxxxxxxxxxxxxxxxxxxxxxxxHYLKKPLVDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1092	2.2.26 [Sep-21-2011]
Q9T014	1036	Protein SPA1-RELATED 2 OS	yes	no	0.937	0.988	0.522	0.0
Q9SYX2	1029	Protein SUPPRESSOR OF PHY	no	no	0.869	0.922	0.460	0.0
Q9LJR3	845	Protein SPA1-RELATED 3 OS	no	no	0.645	0.834	0.392	1e-156
Q94BM7	794	Protein SPA1-RELATED 4 OS	no	no	0.539	0.741	0.458	1e-146
P43254	675	E3 ubiquitin-protein liga	no	no	0.447	0.724	0.375	2e-98
P93471	672	E3 ubiquitin-protein liga	N/A	no	0.434	0.706	0.375	6e-95
Q8NHY2	731	E3 ubiquitin-protein liga	yes	no	0.412	0.615	0.4	2e-94
Q9R1A8	733	E3 ubiquitin-protein liga	yes	no	0.412	0.613	0.4	5e-94
Q9FFA7	368	WD repeat-containing prot	no	no	0.267	0.793	0.343	5e-37
Q9LTJ6	385	WD repeat-containing prot	no	no	0.271	0.771	0.330	2e-36

>sp|Q9T014|SPA2_ARATH Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2

 Score = 1041 bits (2691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1100 (52%), Positives = 720/1100 (65%), Gaps = 76/1100 (6%)

Query: 4    MDEG-VGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIP-EGTSSDGSFQILA 61
            MDEG VG+V+ ++ A+ A LQ K  E S +PE+   V E  E+ +  E  S D S+ ++A
Sbjct: 2    MDEGSVGDVSRIDEADVAHLQFKNSEQSFKPENIE-VREVKEVQVQREAGSPDCSYGVIA 60

Query: 62   DMLEGKSVNRIVSPMDASENPCP--HSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERI 119
            D L+GK+    V  +     PC    + +D G +VEELTV+    S++AIVG  + R R+
Sbjct: 61   DFLDGKNGGDHVELI--GNEPCSSRQNTNDEGDVVEELTVKTCEGSSMAIVGRPSSRARL 118

Query: 120  STRHDRWQHLYQLGSGSGSGSSRGDRGHGRTMLGAWEDVGDTSLHDF----ITQKPLNDE 175
                 ++ H + L       SS   +   R  +    + G  SL +     +    +N E
Sbjct: 119  EMNRSQFLHRFPLDGDLPGSSSMSKKVIDRGTVSILRNAGKMSLPETSNGQLAIIAVNGE 178

Query: 176  HNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAF 235
             N   E   N E + +    LSH  I+TKMLS+SGFS+FFV+ TLKGKG+  RGPP N  
Sbjct: 179  AN---EHLTNVERNPVPVEALSHEGIKTKMLSQSGFSQFFVRKTLKGKGVTFRGPPNNRS 235

Query: 236  KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV 295
            K R     T A             ++G+ +V +N S K          +G   L + T  
Sbjct: 236  KARNMDQQTVA-------------SSGSALVIANTSAKISSSIPLAAYDGLPCLPSNTSK 282

Query: 296  PASCW-IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLD 354
            P+SC       +G    G++LREWL +   +  + EC+YIFRQIV  VD  H+QGV   D
Sbjct: 283  PSSCANPSDTHRGCGGEGLSLREWLKSERQEVNKAECMYIFRQIVDHVDCSHSQGVVLCD 342

Query: 355  LKPSSFKLLQSNQVKYIGPIIQKETLESA--SLDIPHSENYRLRRRSAEEEMFTTGIASA 412
            L+PSSFK+ + N VKY+    Q+E+ +S      +   EN  +RRR  +    +     A
Sbjct: 343  LRPSSFKIFKENAVKYVVSGSQRESFDSNMNKETLSQLENPLVRRRLGDTSSLSI---PA 399

Query: 413  KKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSK 472
            KKQK +     SR W +F    G  I+T N    N+ +I   H  +++ H        S 
Sbjct: 400  KKQKSSGPS--SRQWPMFQRAGGVNIQTEN----NDGAIQEFHFRSSQPHC-------ST 446

Query: 473  SSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSE 532
             + P          TSVSEQLEEKWYASPEEL G + + SSNIYSLG+L +EL  +F  E
Sbjct: 447  VACPF---------TSVSEQLEEKWYASPEELRGDMRSASSNIYSLGILLYELLSQFQCE 497

Query: 533  RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVC 592
            RA  AAMSD+R RILPP FLSENPKEAGFCLW LHPE   RP+TR+ILQSEV N   ++ 
Sbjct: 498  RAREAAMSDIRHRILPPKFLSENPKEAGFCLWLLHPESSCRPSTRDILQSEVVNGIPDLY 557

Query: 593  AEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPL 652
            AE L  SI+Q+D+ESELL HFL   +E++Q  A  L+ EI S+EADI+E+ +R     P 
Sbjct: 558  AEGLSLSIEQEDTESELLQHFLFLSQEKRQKHAGNLMEEIASVEADIEEIVKRRCAIGP- 616

Query: 653  VDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQL 712
              PSL                     +  SP S   EMRL+RN+NQLE AYF+ R    L
Sbjct: 617  --PSL------------------EEASSSSPASSVPEMRLIRNINQLESAYFAARIDAHL 656

Query: 713  SDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRT 772
             ++    R D DLLR+ +N     ++ E  +  DR+GAFFDGLCKYARYSKFE +G+LRT
Sbjct: 657  PEARYRLRPDRDLLRNSDNTVAEVENSETWSSDDRVGAFFDGLCKYARYSKFETRGVLRT 716

Query: 773  GEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLS 832
             E NN++NVICS+ FDRDED+FA AGVSKKIKI+EFN+LFN+SVD++YPA+EM NRSKLS
Sbjct: 717  SELNNTSNVICSLGFDRDEDYFATAGVSKKIKIYEFNSLFNESVDIHYPAIEMPNRSKLS 776

Query: 833  CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
             VCWNNYI+NYLAS+DYDG+VKLWD  TGQ +SH+IEHEKRAWSVDFS+  PTKLASGSD
Sbjct: 777  GVCWNNYIRNYLASSDYDGIVKLWDVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSD 836

Query: 893  DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
            DCSVKLWNINE+N L TI+NIANVCCVQFS  SSHLLAFGS+D+RTYCYDLRN R PWC+
Sbjct: 837  DCSVKLWNINERNCLGTIRNIANVCCVQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCI 896

Query: 953  LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012
            L+GH KAVSY KFLD+ TLVTASTDN LKLWDLK+T+H G STNACSLTF GHTNEKNFV
Sbjct: 897  LSGHNKAVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFV 956

Query: 1013 GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR 1072
            GLST+DGYIACGSE+NEVYAYHRSLPMPITSYKFGSIDPISGKE ++DN LFVSSVCWR+
Sbjct: 957  GLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCWRK 1016

Query: 1073 RSDMVVAANSSGCIKVLQMV 1092
            RS+MVV+A+S+G IKVLQ+V
Sbjct: 1017 RSNMVVSASSNGSIKVLQLV 1036

Involved in suppression of photomorphogenesis in dark-grown seedlings. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYX2|SPA1_ARATH Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1057 (46%), Positives = 654/1057 (61%), Gaps = 108/1057 (10%)

Query: 66   GKSVNRIVSPMDASENPCPHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERISTRHDR 125
            G S +R V   D ++ P P   + A + VEELT+      N  IV  SN+    S R  +
Sbjct: 51   GSSAHRNV---DLTKPPPPEEAAGAKLSVEELTL-----GNYRIVQGSNNTNVDSPRAGK 102

Query: 126  WQHLYQLGSGSGSGSSRGD-----RGHGRTMLGAWEDVGDT-----SLHDFITQKPLNDE 175
            ++HLY+L  GS   +  GD     R   + +    + +        +L  F++++   + 
Sbjct: 103  FEHLYRLARGSAFRAGDGDLDSQPRDMDQMLSRIRQQLAGAPSERQNLKPFMSRRSDQNL 162

Query: 176  HNTILEQSANTENDGLSGNMLSHGSIRTKM-LSKSGFSEFFVKTTLKGKGIVCRG---PP 231
                    A  EN  ++   L    ++ K  +S S FS+  +K  +KGKG+V +    PP
Sbjct: 163  EAFSERLRAAGENSIMNAPALISEGVQMKTPVSSSNFSQLLLKRAMKGKGVVGKNQETPP 222

Query: 232  LNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG 290
                 +  G  + K  ++ +  P D         ++   +SPK    G  +VS+G  +  
Sbjct: 223  EFVSDQDLGSKEKKLDISKSPTPHD---------VLPLKSSPK----GNGMVSHGDGN-- 267

Query: 291  ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGV 350
                              S  G++LRE+L +   K ++   L +FRQ+V LVD  H++ +
Sbjct: 268  ---------------HSKSSIGISLREFLRSSYAKREKRHGLCLFRQLVELVDSAHSKRL 312

Query: 351  TFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIA 410
              LDL+PS F L+ S +++YIG    K  LES   D+    N   RRR   EE  ++G  
Sbjct: 313  FLLDLRPSLFTLVPSKKLRYIGNF-GKNDLES---DVDEDLN---RRRPVVEES-SSGGR 364

Query: 411  SAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN-------ESDINEVSIPHSHN-DTNEHH 462
             +KK+K + ++N            GN+++  +       +S + ++++  + N D+ E  
Sbjct: 365  DSKKRKMDLHLN----------SPGNQLQATSTGRPFKRKSPVIDLNMVDARNPDSCELQ 414

Query: 463  TNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLF 522
                  N S      VS+ +++QS  +S  LEE+WY  PEE++G      SNIY+LGVL 
Sbjct: 415  QQDYIKNLS------VSSVSRKQS--MSTWLEEQWYTCPEEINGEDIGEKSNIYALGVLL 466

Query: 523  FELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS 582
            FEL    +S    AA M+DLR RILPP+FLS+ PKEAGFCLW LHPEP SRP+ R+IL+S
Sbjct: 467  FELLCHCESGEMHAAMMADLRHRILPPTFLSKYPKEAGFCLWLLHPEPSSRPSARDILKS 526

Query: 583  EVTNEFQEVCAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEV 642
            E+      +C ++ + S    +  SELLLHFL SLE +K+ +ASKL+ +I++LE DIKE 
Sbjct: 527  EL------ICEDDSVKSTAAAEEISELLLHFLSSLEVQKKKKASKLLQDIQTLEDDIKEA 580

Query: 643  ERRHYLKKPLVDPSLQNESAPSRENRY----FNEQLSSSEAQLSPISDANEMRLMRNLNQ 698
            ERR+     LV       S  + E R      +E  ++S A   P   AN  RLM N+ Q
Sbjct: 581  ERRYSSNVSLV------RSHGAIEKRVQSSPLDEHCTTSSALFVPT--ANTDRLMSNIRQ 632

Query: 699  LERAYFSMRSQIQLSDSDSTTRADNDLL-RDR--ENLFLAQQDQEIQNPTDRLGAFFDGL 755
            LE AYF MRSQI LS S +T R+D  L  RDR  EN    Q        +D+L  FF+GL
Sbjct: 633  LEDAYFFMRSQINLSSSAATARSDKTLKDRDRCSENQNENQDMSTKGKSSDQLEVFFEGL 692

Query: 756  CKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDS 815
            CK+ARYSKFE  G +R+G+  NSA+V+CS+SFD DE+H AAAG+SKKIKIF+FNA  N+S
Sbjct: 693  CKFARYSKFETCGTIRSGDLLNSASVVCSLSFDPDEEHIAAAGISKKIKIFDFNAFMNES 752

Query: 816  VDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAW 875
            V V+YP VEM N+SKLSCVCWN+YIKNYLAS DYDGVV++WDA TGQ  S Y EH+KRAW
Sbjct: 753  VGVHYPLVEMVNKSKLSCVCWNSYIKNYLASTDYDGVVQIWDAGTGQGFSQYTEHQKRAW 812

Query: 876  SVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSAD 935
            SVDFS   PTK  SGSDDCSVKLW+INEK SL TI + ANVCCVQFS++S+HLLAFGSAD
Sbjct: 813  SVDFSPSDPTKFVSGSDDCSVKLWSINEKRSLGTIWSPANVCCVQFSSYSNHLLAFGSAD 872

Query: 936  YRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPST 995
            Y+ YCYDLR  + PWC LAGHEKAVSYVKF+DS T+V+ASTDN LKLW+L +T+ +G S 
Sbjct: 873  YKVYCYDLRYVKTPWCTLAGHEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSP 932

Query: 996  NACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGK 1055
             ACSLT+ GHTN+KNFVGLS  DGYIACGSE+NEVY+Y++SLPMP+TSYKFGS+DPISG 
Sbjct: 933  GACSLTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGN 992

Query: 1056 ETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092
            E  DDNG FVSSVCWR++S+M+VAANS+G +K+L++V
Sbjct: 993  EYFDDNGQFVSSVCWRKKSNMLVAANSTGNMKLLKLV 1029

Controls normal photoperiodic flowering and regulates circadian rhythms. Required for suppression of photomorphogenesis in dark-grown seedlings and for normal elongation growth of adult plants. Integral component of the COP1/SPA E3 ubiquitin-protein ligase complex. Involved in HY5, HFR1, LAF1 and CO degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q9LJR3|SPA3_ARATH Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1

 Score =  553 bits (1425), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 331/844 (39%), Positives = 459/844 (54%), Gaps = 139/844 (16%)

Query: 313  VNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI- 371
            V+LR+WL+         ECL++FRQIV +V+  H+QG+   +++PS F +   N V +I 
Sbjct: 76   VSLRQWLDKPERSVDVFECLHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIE 135

Query: 372  --------------GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKF 417
                          GPI QKE   S              RR   EE  +  IA  +K  +
Sbjct: 136  SASCSDSGSDSLEDGPISQKEIGSS--------------RR---EEAVSKAIAIEEKGVY 178

Query: 418  NHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPL 477
            N  +               KIE   E       + H                        
Sbjct: 179  NKLLE-------------RKIEKLEEEKTQPFPMKHIL---------------------- 203

Query: 478  VSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA 537
                           +E  WY SPEE  G   T +S++Y LGVL FELF    S    + 
Sbjct: 204  --------------AMETSWYTSPEEDFGSSSTCASDVYRLGVLLFELFCPVPSREEKSR 249

Query: 538  AMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELL 597
             MS LR R+LPP  L + PKEA FCLW LHPEP  RP+  ++LQSE   E ++   EE  
Sbjct: 250  TMSSLRHRVLPPQILLKCPKEASFCLWLLHPEPTCRPSMSDLLQSEFITEPRD-NLEERE 308

Query: 598  SSIDQDD--SESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKK----- 650
            ++I+  D   E E LL FL+ +++ KQ  A +L   +  L +DI++V +R  + K     
Sbjct: 309  AAIELRDRIEEQESLLEFLLLIQQRKQESAYRLQDTVSLLSSDIEQVVKRQLILKKRGSS 368

Query: 651  ---------------PLVDPSLQNESAPS----RENRYFNEQLS-------SSEAQLSPI 684
                           PL+  S Q    PS       R     L+         E+Q S +
Sbjct: 369  LSDFSKDDHQYTSGQPLM--SFQANEEPSAFLASRKRVRQGILALENGVEVDEESQGSTL 426

Query: 685  SDANEMRLMRNLNQLERAYF-SMRSQIQLSDS-DSTTRADNDLLRDRENLFLAQQDQEIQ 742
             +++  RLMRN  +LE  YF + R Q++ + S  S TR       +     +  +   + 
Sbjct: 427  LESS--RLMRNFKKLESVYFLTRRRQMKAAASGKSLTRHSPLSSENGRGSMIVSEKSSVS 484

Query: 743  NPT---------DRLGA----FFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDR 789
            NP           R G     F +GLC+Y  +S+  V+  L+ G+  NS+N++C+++FDR
Sbjct: 485  NPVAPKAFFNNDSRQGGWIDPFLEGLCRYLSFSQLRVKADLKQGDLLNSSNLVCALAFDR 544

Query: 790  DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADY 849
            + + FA AGV+KKIKIFE N++ ND+ D++YP VE++ RSKLS +CWN+YIK+ +AS+++
Sbjct: 545  EGELFATAGVNKKIKIFECNSIVNDNRDIHYPVVELAGRSKLSSLCWNSYIKSQIASSNF 604

Query: 850  DGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLAT 909
            DGVV++WD    Q V+   EH+KR WS+D S   PT LASGSDD +VKLW+IN+  S+ T
Sbjct: 605  DGVVQIWDVARSQLVTEMKEHKKRVWSIDISSADPTLLASGSDDGTVKLWSINQGVSIGT 664

Query: 910  IKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSG 969
            IK  ANVCCVQF + S   LAFGSAD++ Y YDLRN + P C + GH K VSYVKF+DS 
Sbjct: 665  IKTKANVCCVQFPSDSGRSLAFGSADHKVYYYDLRNPKIPLCTMIGHSKTVSYVKFVDSS 724

Query: 970  TLVTASTDNKLKLWDLKRTSHTGPSTNACSL-TFSGHTNEKNFVGLSTADGYIACGSESN 1028
            TLV++STDN LKLWDL   S +    N   L +F+GHTN KNFVGLS +DGYIA GSE+N
Sbjct: 725  TLVSSSTDNTLKLWDL---SMSASGINESPLHSFTGHTNLKNFVGLSVSDGYIATGSETN 781

Query: 1029 EVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088
            EV+ YH++ PMP+ SY F + D +SG E DD +  F+SS+CWR +S  +VAANS+G IK+
Sbjct: 782  EVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQ-FISSICWRGQSSTLVAANSNGNIKI 840

Query: 1089 LQMV 1092
            L+M+
Sbjct: 841  LEMM 844

Repressor of photomorphogenesis in the light. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94BM7|SPA4_ARATH Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1

 Score =  520 bits (1339), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 289/630 (45%), Positives = 393/630 (62%), Gaps = 41/630 (6%)

Query: 493  LEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFL 552
            +E  WY S EE +G +C  +S+IY LGVL FELF    S    +  MS LR R+LPP  L
Sbjct: 176  MEMSWYTSHEEDNGSLCNCASDIYRLGVLLFELFCPVSSREEKSRTMSSLRHRVLPPQIL 235

Query: 553  SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAE-ELLSSIDQDDSESELLL 611
               PKEA FCLW LHPEP  RP+  E+LQSE  NE +E   E E    +     E ELLL
Sbjct: 236  LNWPKEASFCLWLLHPEPSCRPSMSELLQSEFINEPRENLEEREAAMELRDRIEEQELLL 295

Query: 612  HFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYL--------------KKPLVDPSL 657
             FL  +++ KQ  A KL   I  L +DI +V +R  +              +K +   + 
Sbjct: 296  EFLFLIQQRKQEAADKLQDTISLLSSDIDQVVKRQLVLQQKGRDVRSFLASRKRIRQGAE 355

Query: 658  QNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMR-SQIQLSDSD 716
               +    ++   +E+    +   S + +++  RLMRNL +LE  YF+ R  QI+     
Sbjct: 356  TTAAEEENDDNSIDEESKLDDTLESTLLESS--RLMRNLKKLESVYFATRYRQIK----- 408

Query: 717  STTRADNDLLR----------DRENLFLAQQDQEIQNPTDRLG---AFFDGLCKYARYSK 763
            + T A+  L R            E   ++Q  ++  N + + G    F +GLCKY  +SK
Sbjct: 409  AATAAEKPLARYYSALSCNGRSSEKSSMSQPSKDPINDSRQGGWIDPFLEGLCKYLSFSK 468

Query: 764  FEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAV 823
              V+  L+ G+  NS+N++C+I FDRD + FA AGV+KKIKIFE  ++  D  D++YP V
Sbjct: 469  LRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVV 528

Query: 824  EMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVH 883
            E+++RSKLS +CWN+YIK+ +AS++++GVV++WD    Q V+   EHEKR WS+D+S   
Sbjct: 529  ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSAD 588

Query: 884  PTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDL 943
            PT LASGSDD SVKLW+IN+  S+ TIK  AN+CCVQF + +   LAFGSAD++ Y YDL
Sbjct: 589  PTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSETGRSLAFGSADHKVYYYDL 648

Query: 944  RNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSL-TF 1002
            RN + P C + GH K VSYV+F+DS TLV++STDN LKLWDL   S +    N   L +F
Sbjct: 649  RNPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDL---SMSISGINETPLHSF 705

Query: 1003 SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNG 1062
             GHTN KNFVGLS +DGYIA GSE+NEV+ YH++ PMP+ SYKF +IDP+S  E DD + 
Sbjct: 706  MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQ 765

Query: 1063 LFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092
             F+SSVCWR +S  +VAANS+G IK+L+MV
Sbjct: 766  -FISSVCWRGQSSTLVAANSTGNIKILEMV 794

Repressor of photomorphogenesis in the light. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2

 Score =  361 bits (927), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 323/573 (56%), Gaps = 84/573 (14%)

Query: 577  REILQSEVTNEFQEVCAEELLS-------SIDQDDSES--ELLLHFLISLEEEKQNQASK 627
            RE LQ       +EV  + LL+        ++Q+++E   ++LL FL  L ++K ++ ++
Sbjct: 127  REALQRGCDVSIKEV--DNLLTLLAERKRKMEQEEAERNMQILLDFLHCLRKQKVDELNE 184

Query: 628  LVGEIRSLEADIKEVER----------RHYLKKPLV--DPSLQNESAPSRENRYFN---- 671
            +  +++ ++ DI  VER          R+ +K  ++  DPS +N     +    FN    
Sbjct: 185  VQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPHEKNQIGFNSNSL 244

Query: 672  ------------------------------EQLSSSEAQ---LSPISDANEMRLMRNLNQ 698
                                          + LS S++Q    S +S A + R+    N 
Sbjct: 245  SIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMARKKRIHAQFND 304

Query: 699  LERAYFSMRSQIQLSDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKY 758
            L+  Y   R Q  L+D  ++ + ++  +  RE              ++ L  F   L  +
Sbjct: 305  LQECYLQKRRQ--LADQPNSKQENDKSVVRREGY------------SNGLADFQSVLTTF 350

Query: 759  ARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDV 818
             RYS+  V   +R G+  +SAN++ SI FDRD++ FA AGVS+ IK+F+F+++ N+  D+
Sbjct: 351  TRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADM 410

Query: 819  YYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVD 878
              P VEMS RSKLSC+ WN + KN++AS+DY+G+V +WD  T Q++  Y EHEKRAWSVD
Sbjct: 411  QCPIVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVD 470

Query: 879  FSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRT 938
            FS+  P+ L SGSDDC VK+W   ++ S+  I   AN+CCV+++  SS+ +A GSAD+  
Sbjct: 471  FSRTEPSMLVSGSDDCKVKVWCTRQEASVINIDMKANICCVKYNPGSSNYIAVGSADHHI 530

Query: 939  YCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNAC 998
            + YDLRN   P  V +GH+KAVSYVKFL +  L +ASTD+ L+LWD+K         N  
Sbjct: 531  HYYDLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVK--------DNLP 582

Query: 999  SLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETD 1058
              TF GHTNEKNFVGL+    Y+ACGSE+NEVY YH+ +  P+TS++FGS D    +E  
Sbjct: 583  VRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE-- 640

Query: 1059 DDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091
            +    F+S+VCW+  S  ++ ANS G IKVL +
Sbjct: 641  EAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 673

E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Represses photomorphogenesis in darkness by mediating ubiquitination and subsequent proteasomal degradation of light-induced transcription factors such as HY5, HYH and LAF1. Down-regulates MYB21, probably via ubiquitination process. Light stimuli abrogate the repression of photomorphogenesis, possibly due to its localization to the cytoplasm. Could play a role in switching between skotomorphogenetic and photomorphogenetic pathways.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1

 Score =  349 bits (896), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 202/538 (37%), Positives = 311/538 (57%), Gaps = 63/538 (11%)

Query: 600  IDQDDSES--ELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVER----------RHY 647
            ++Q+++E   ++LL FL  L ++K ++  ++  +++ ++ DI  VE+          R+ 
Sbjct: 150  MEQEEAERNMQILLDFLHCLRKQKVDELKEVQTDLQFIKEDIGAVEKHRMDLYRARDRYS 209

Query: 648  LKKPLVDPSLQNESAPSRENRYFNEQLSSSEAQLSPI------SDANEMRLMRNLNQLER 701
            +K  ++D S        R++R+ +  L+SS    SP+      S  +  +     +Q+  
Sbjct: 210  VKLRMLDDS------GGRKSRHSSMDLNSSGLASSPLNLRGGLSSGSHTKKNDGKSQISS 263

Query: 702  AYFSM--RSQIQLSDSDSTTRADNDLLR---------DRENLFLAQQDQEIQNPTDR--- 747
                +  R  I  SDS    ++   L+R         D +  +L ++ Q    P  +   
Sbjct: 264  HGHGIQRRDPITGSDSQYINQSGLALVRKKRVHTQFNDLQECYLQKRRQAADKPHGQQER 323

Query: 748  -------------LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHF 794
                         L  F   L  + RYS+  V   +R G+  +SAN++ SI FDRD+D F
Sbjct: 324  DTNFISREGYSCGLDDFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDDLF 383

Query: 795  AAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK 854
            A AGVS++IK+F+F+A+ N+  D + P VEM+ RSKLSC+ WN Y KN +AS+DY+G+V 
Sbjct: 384  ATAGVSRRIKVFDFSAVVNEPTDAHCPVVEMTTRSKLSCLSWNKYAKNQIASSDYEGIVT 443

Query: 855  LWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIA 914
            +W   T +++  Y EHEKRAWSVDFS+  P+ L SGSDDC VK+W  N++ S+  I   A
Sbjct: 444  VWTMTTRKSLMEYEEHEKRAWSVDFSRTDPSMLVSGSDDCKVKVWCTNQEASVLNIDMKA 503

Query: 915  NVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTA 974
            N+CCV+++  S + +A GSAD+  + YDLRN   P  V  GH+KAVSYVKFL +  L +A
Sbjct: 504  NICCVKYNPGSGNYIAVGSADHHIHYYDLRNISRPVHVFTGHKKAVSYVKFLSNDELASA 563

Query: 975  STDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034
            STD+ L+LWD+K+        N    TF GH NEKNFVGL+    YIACGSE+NEV+ YH
Sbjct: 564  STDSTLRLWDVKQ--------NLPVRTFRGHANEKNFVGLTVRSEYIACGSETNEVFVYH 615

Query: 1035 RSLPMPITSYKFGSIDPISGKETDDDNG-LFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091
            + +  P+T ++FG++D    ++ +D+ G  F+S+VCW+     ++ ANS G IKVL +
Sbjct: 616  KEISKPLTWHRFGTLDM---EDAEDEAGSYFISAVCWKSDRPTILTANSQGTIKVLVL 670

E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Represses photomorphogenesis in darkness by mediating ubiquitination and subsequent proteasomal degradation of light-induced transcription factors. Light stimuli abrogate the repression of photomorphogenesis, possibly due to its localization to the cytoplasm. Could play a role in switching between skotomorphogenetic and photomorphogenetic pathways.

Pisum sativum (taxid: 3888)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1

 Score =  347 bits (891), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 202/505 (40%), Positives = 290/505 (57%), Gaps = 55/505 (10%)

Query: 608  ELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLV-DPSLQNESAPSRE 666
            ++L+ FL      K+ Q  ++  E+  LE DIK VE    L  P+  D ++    APS  
Sbjct: 262  QILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPS 321

Query: 667  NRYFNEQL---------SSSEAQLSPISDAN----EMRLMRNLNQLERAYFSMRSQIQLS 713
            +    +            SS+ +  P  ++       RL  +   LE+ YFS R   ++S
Sbjct: 322  HSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMS-RIS 380

Query: 714  DSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLR-T 772
            D DS T +                         +L  F + L K+ RY+       L   
Sbjct: 381  D-DSRTAS-------------------------QLDEFQECLSKFTRYNSVRPLATLSYA 414

Query: 773  GEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLS 832
             +  N ++++ SI FDRD D+FA AGV+KKIK++E++ +  D+VD++YP  EM+  SK+S
Sbjct: 415  SDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKIS 474

Query: 833  CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
            C+ W++Y KN LAS+DY+G V LWD  TGQ    Y EHEKR WSVDF+ + P  LASGSD
Sbjct: 475  CISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSD 534

Query: 893  DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
            D  VKLW+ N  NS+A+I+  ANVCCV+FS  S + LAFG AD+  + YDLRN + P  V
Sbjct: 535  DAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMV 594

Query: 953  LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012
              GH KAVSY KF+    +V+ASTD++LKLW++ +          C  +F GH NEKNFV
Sbjct: 595  FKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKP--------YCLRSFKGHINEKNFV 646

Query: 1013 GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKE-TDDDNGLFVSSVCWR 1071
            GL++   YIACGSE+N +Y Y++ L   + ++KF ++  +  K+  +DD   FVS+VCWR
Sbjct: 647  GLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWR 706

Query: 1072 R----RSDMVVAANSSGCIKVLQMV 1092
                  S++++AANS G IKVL++V
Sbjct: 707  ALPDGESNVLIAANSQGTIKVLELV 731

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in JUN ubiquitination and degradation. Directly involved in p53 (TP53) ubiquitination and degradation, thereby abolishing p53-dependent transcription and apoptosis. Ubiquitinates p53 independently of MDM2 or RCHY1. Probably mediates E3 ubiquitin ligase activity by functioning as the essential RING domain subunit of larger E3 complexes. In contrast, it does not constitute the catalytic RING subunit in the DCX DET1-COP1 complex that negatively regulates JUN, the ubiquitin ligase activity being mediated by RBX1.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2

 Score =  346 bits (888), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 202/505 (40%), Positives = 289/505 (57%), Gaps = 55/505 (10%)

Query: 608  ELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLV-DPSLQNESAPSRE 666
            ++L+ FL      K+ Q  ++  E+  LE DIK VE    L  P+  D ++    APS  
Sbjct: 264  QILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPS 323

Query: 667  NRYFNEQLS---------SSEAQLSPISDAN----EMRLMRNLNQLERAYFSMRSQIQLS 713
            +    +            +S+ +  P  ++       RL  +   LE+ YFS R   ++S
Sbjct: 324  HSSIIDSTEYSQPPGFSGTSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMS-RIS 382

Query: 714  DSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLR-T 772
            D DS T +                         +L  F + L K+ RY+       L   
Sbjct: 383  D-DSRTAS-------------------------QLDEFQECLSKFTRYNSVRPLATLSYA 416

Query: 773  GEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLS 832
             +  N ++++ SI FDRD D+FA AGV+KKIK++E+  +  D+VD++YP  EM+  SK+S
Sbjct: 417  SDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKIS 476

Query: 833  CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
            C+ W++Y KN LAS+DY+G V LWD  TGQ    Y EHEKR WSVDF+ + P  LASGSD
Sbjct: 477  CISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSD 536

Query: 893  DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
            D  VKLW+ N  NS+A+I+  ANVCCV+FS  S + LAFG AD+  + YDLRN + P  V
Sbjct: 537  DAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMV 596

Query: 953  LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012
              GH KAVSY KF+    +V+ASTD++LKLW++ +          C  +F GH NEKNFV
Sbjct: 597  FKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKP--------YCLRSFKGHINEKNFV 648

Query: 1013 GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKE-TDDDNGLFVSSVCWR 1071
            GL++   YIACGSE+N +Y Y++ L   + ++KF ++  +  K+  +DD   FVS+VCWR
Sbjct: 649  GLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWR 708

Query: 1072 RRSD----MVVAANSSGCIKVLQMV 1092
              SD    +++AANS G IKVL++V
Sbjct: 709  ALSDGESNVLIAANSQGTIKVLELV 733

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in JUN ubiquitination and degradation. Directly involved in p53 (TP53) ubiquitination and degradation, thereby abolishing p53-dependent transcription and apoptosis. Ubiquitinates p53 independently of MDM2 or RCHY1. Probably mediates E3 ubiquitin ligase activity by functioning as the essential RING domain subunit of larger E3 complexes. In contrast, it does not constitute the catalytic RING subunit in the DCX DET1-COP1 complex that negatively regulates JUN, the ubiquitin ligase activity being mediated by RBX1.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FFA7|RUP2_ARATH WD repeat-containing protein RUP2 OS=Arabidopsis thaliana GN=RUP2 PE=1 SV=1

 Score =  157 bits (397), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 164/338 (48%), Gaps = 46/338 (13%)

Query: 780  NVICSISFDRDEDHFAAAGVSKKIKIFEFNALF-NDSVDV-------------YYPAVEM 825
            +VI +I FD  ++  A AG+S+KI+ +   +L  N++V               YY    +
Sbjct: 41   DVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRNNAVSGTGVSFVDQATACEYY----I 96

Query: 826  SNRSKLSCVCWN-NYIKNYLASADYDGVVKLWDACTGQTVSHYIEHE-KRAWSVDFSQ-- 881
               +KLS + W        + S DYDGVV  +D      V    EH  +R WSVD+++  
Sbjct: 97   CTPAKLSSLRWRPGSGGRVIGSGDYDGVVMEYDLEKRTPVFERDEHGGRRVWSVDYTRHG 156

Query: 882  VHPTKLASGSDDCSVKLWN--INEKNSLATIKNIA----NVCCVQFSAHSSHLLAFGSAD 935
               T  ASGSDD ++++W+     + S+  ++        VCCV+F       +A G AD
Sbjct: 157  GASTVGASGSDDGTMQVWDPRCPPEESVGVVRPAGICRSAVCCVEFDPSGGPAVAVGCAD 216

Query: 936  YRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPST 995
             + Y YD+R    P   L GH K VSYV+FLD GT+VTA TD  LKLW ++         
Sbjct: 217  RKGYVYDIRKLVDPALTLQGHTKTVSYVRFLDGGTVVTAGTDGCLKLWSVE--------D 268

Query: 996  NACSLTFSGHTNEKNFVGLSTA--DGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPIS 1053
                 T+ GH N +NFVGLS         CGSE+N V+ Y R    P+    F   +P+ 
Sbjct: 269  GRVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVDGF---EPVG 325

Query: 1054 GKETDDDNGLFVSSVCWRRRSD---MVVAANSSGCIKV 1088
                 D    FVSSVCWR+       +VA  S G ++V
Sbjct: 326  MNSGSDKR--FVSSVCWRQSGVDQCTLVAGGSDGVLQV 361

Functions in association with RUP1 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5. Play a crucial negative feedback regulatory role downstream of UVR8-COP1 to inhibit UVR8 function, balance UV-B-specific responses and ensure normal plant growth. Is involved in the regulation of photoperiodic flowering and vegetative development. May act as negative regulator of photoperiodic flowering by suppressing flowering through the action of CONSTANS (CO) and FLOWERING LOCUS T (FT).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTJ6|RUP1_ARATH WD repeat-containing protein RUP1 OS=Arabidopsis thaliana GN=RUP1 PE=1 SV=1

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 164/324 (50%), Gaps = 27/324 (8%)

Query: 779  ANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVE--MSNRSKLSCVCW 836
            ++ I +I FD   +  A  G+++KI+ +  ++L  +S D +  A E  +   +KLS + W
Sbjct: 71   SDAIGAIEFDPTGEIIATGGIARKIRSYRLSSLL-ESRDDHVTASESYICTPAKLSSLKW 129

Query: 837  N-NYIKNYLASADYDGVVKLWDACTGQTVSHYIEHE-KRAWSVDFSQVHPTKL-ASGSDD 893
              ++    + S DYDGVV  +D      VS   EH  +R WSVD++  + + + ASGSDD
Sbjct: 130  RPDFSGRVIGSGDYDGVVTEYDVEKQVPVSERDEHGGRRIWSVDYTLYNGSLIGASGSDD 189

Query: 894  CSVKLWNINEKNSLA-TIK--NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPW 950
             +V++W+     +L  T++    A +C V+F       +A G AD   Y YD+R    P 
Sbjct: 190  GTVQMWDPRNGGTLEETVRPGGGAAICSVEFDPFGGSSIAVGCADRNAYVYDIRRLVDPL 249

Query: 951  CVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN 1010
             VL GH K V+Y +F+DS T+VT STD  LK WD+               T+ GH N +N
Sbjct: 250  IVLDGHTKTVTYARFMDSHTIVTGSTDGSLKQWDIDNGRRV-------VRTYRGHVNSRN 302

Query: 1011 FVGLSTA--DGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSV 1068
            FVGLS     G +  GSE+N+V+ Y +    P+     G  +             FVSSV
Sbjct: 303  FVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGHTNRFGSDRR------FVSSV 356

Query: 1069 CWRRRSD---MVVAANSSGCIKVL 1089
            C R+  +    +VA  S G +++ 
Sbjct: 357  CLRQVDEDWCTLVAGGSDGALEIF 380

Functions in association with RUP2 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5. Play a crucial negative feedback regulatory role downstream of UVR8-COP1 to inhibit UVR8 function, balance UV-B-specific responses and ensure normal plant growth. Is involved in the regulation of photoperiodic flowering and vegetative development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1092
255537717	1044	ubiquitin ligase protein cop1, putative	0.947	0.991	0.622	0.0
359473903	1054	PREDICTED: protein SPA1-RELATED 2-like,	0.953	0.987	0.604	0.0
224075074	1020	predicted protein [Populus trichocarpa]	0.923	0.988	0.569	0.0
449452259	1036	PREDICTED: protein SPA1-RELATED 2-like [	0.935	0.986	0.572	0.0
356540404	1103	PREDICTED: protein SPA1-RELATED 2-like [	0.953	0.943	0.537	0.0
356527668	1012	PREDICTED: protein SPA1-RELATED 2-like [	0.911	0.983	0.543	0.0
356495711	1129	PREDICTED: protein SPA1-RELATED 2-like [	0.968	0.937	0.535	0.0
297809331	1032	hypothetical protein ARALYDRAFT_911432 [	0.935	0.990	0.520	0.0
145340093	1036	protein SPA1-related 2 [Arabidopsis thal	0.937	0.988	0.522	0.0
110738246	1100	COP1 like protein [Arabidopsis thaliana]	0.937	0.930	0.522	0.0

>gi|255537717|ref|XP_002509925.1| ubiquitin ligase protein cop1, putative [Ricinus communis] gi|223549824|gb|EEF51312.1| ubiquitin ligase protein cop1, putative [Ricinus communis]

 Score = 1325 bits (3430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 684/1098 (62%), Positives = 806/1098 (73%), Gaps = 63/1098 (5%)

Query: 4    MDEGVG-EVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIP-EGTSSDGSFQILA 61
            MDEG+G E+AP+N  E A L +KE EYS++P   +NVLES E+ IP EG  ++ SF +LA
Sbjct: 1    MDEGLGDEMAPLNMTERAHLHSKENEYSIKPPESSNVLESHEIIIPGEGDYTESSFHVLA 60

Query: 62   DMLEGKSVNRIVSPMDASENPC--PHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERI 119
            D+L+ K++NR   PMDASE  C  P    +AG MVEELTVR  +SSNLAIVGTSN RERI
Sbjct: 61   DILDAKNLNRSGVPMDASEQLCTNPRFMDNAGNMVEELTVRNYDSSNLAIVGTSNFRERI 120

Query: 120  STRHDRWQHLYQLGSGSGSGSSRGD---RGHGRTMLGAWEDVGDTSLHDFITQKPLNDEH 176
             TR  +WQHLYQLG  SG GSS      R +G+ M    ED    S   F++ K  +D+ 
Sbjct: 121  QTRQGQWQHLYQLGGASGIGSSCTKTLYRDNGQEMSSPLEDARYASSPVFLSHKTSSDDC 180

Query: 177  NTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFK 236
            N ++EQSAN +N GLS NM+SHG IRTK+LSKSGFSE+FVK+TLKGKGI+ RGP      
Sbjct: 181  NEVVEQSANAKNKGLSQNMISHGGIRTKILSKSGFSEYFVKSTLKGKGIIFRGP------ 234

Query: 237  ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP 296
                                     GA +   N +       T   SN SL+LG +T +P
Sbjct: 235  ----------------------THEGAKLAPRNENTGKAATVTLAASNSSLNLGVKTTLP 272

Query: 297  ASCWIGGLRQGSSDH-GVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDL 355
             S  I G R   +DH G+ L+ WLNAR HK  +++CL+IF++IV LVDY H++GV   DL
Sbjct: 273  CSFGITGPRPAGADHDGIGLQHWLNARQHKVNKVDCLHIFKRIVDLVDYSHSKGVALHDL 332

Query: 356  KPSSFKLLQSNQVKYIGPIIQKETLESA-SLDIPHSENYRLRRRSAEEEMFTTGIASAKK 414
            +PS FKLLQSNQV YIG  ++K+T + A   D+P +EN+  RRR+AE+ +F      AKK
Sbjct: 333  RPSCFKLLQSNQVNYIGSAVEKDTFDRAMDRDVPSTENHVARRRAAEQGIFPFVGILAKK 392

Query: 415  QKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSS 474
            QKF+ N N  R W LF +K+G K ETAN+ D+   S   S ++  EH  N  +    + S
Sbjct: 393  QKFSENANSLRQWPLFTAKHGLKFETANDGDLGLASTQDSRSEVAEHIPNTEYRIQGRIS 452

Query: 475  SPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERA 534
              L SN AQQQ  S++++LE+KWYASPEELS G+CT SSNIYSLGVL FEL G FDSER 
Sbjct: 453  HQL-SNAAQQQLASITDRLEDKWYASPEELSQGICTMSSNIYSLGVLLFELLGHFDSERG 511

Query: 535  LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAE 594
             A AM+DLR RILPP FLSENPKEAGFCLW +HPEP SRPTTREILQSEV N  QEV  E
Sbjct: 512  HATAMADLRHRILPPHFLSENPKEAGFCLWLIHPEPSSRPTTREILQSEVINGLQEVSVE 571

Query: 595  ELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVD 654
            EL SSIDQDD+ESELLLHFL  L+E KQN ASKL  EIR +EADI EV RR+ L+K L +
Sbjct: 572  ELSSSIDQDDAESELLLHFLCLLKEHKQNHASKLADEIRCIEADIGEVARRNCLEKSLAN 631

Query: 655  PSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSD 714
                                     QLS +S  N+MRL   + QLE AYFSMRSQIQL  
Sbjct: 632  -------------------------QLSCVSRTNDMRLNNIIRQLESAYFSMRSQIQLPK 666

Query: 715  SDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGE 774
            +D+TT  D D+LR+REN + A +  E +NPTD LG+FFDGLCKYARYSKFEV+G+LRTG+
Sbjct: 667  TDATTNQDMDVLRNRENCYFALEGDEKENPTDCLGSFFDGLCKYARYSKFEVRGLLRTGD 726

Query: 775  FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCV 834
            FNNSANVICS+SFDRD D+FA AGVSKKIKIFEFN+L NDSVD++YP +EMSN+SKLSC+
Sbjct: 727  FNNSANVICSLSFDRDMDYFATAGVSKKIKIFEFNSLLNDSVDIHYPVIEMSNKSKLSCI 786

Query: 835  CWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC 894
            CWN YIKNYLAS DYDGVVKLWDA TGQ V  Y EHE+RAWSVDFSQV+PTKLASG DDC
Sbjct: 787  CWNTYIKNYLASTDYDGVVKLWDANTGQGVYQYNEHERRAWSVDFSQVYPTKLASGGDDC 846

Query: 895  SVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA 954
            +VKLW+INEKNSL TI+NIANVCCVQFS HS+HLLAFGSADYRTYCYDLRN R PWCVLA
Sbjct: 847  TVKLWSINEKNSLGTIRNIANVCCVQFSCHSTHLLAFGSADYRTYCYDLRNVRTPWCVLA 906

Query: 955  GHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGL 1014
            GH+KAVSYVKFLD GTLVTASTDN LKLWDL + S +G S NAC+LT SGHTNEKNFVGL
Sbjct: 907  GHDKAVSYVKFLDRGTLVTASTDNSLKLWDLNKASSSGLSNNACTLTLSGHTNEKNFVGL 966

Query: 1015 STADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRS 1074
            S ADGYIACGSE+NEVYAYHRSLP+PITS+KFGSIDPISGKETDDDNG FVSSV WR +S
Sbjct: 967  SVADGYIACGSETNEVYAYHRSLPVPITSHKFGSIDPISGKETDDDNGQFVSSVSWRGKS 1026

Query: 1075 DMVVAANSSGCIKVLQMV 1092
            DM++AANS+GCIKVLQ+V
Sbjct: 1027 DMLIAANSTGCIKVLQVV 1044

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473903|ref|XP_002271391.2| PREDICTED: protein SPA1-RELATED 2-like, partial [Vitis vinifera]

 Score = 1261 bits (3264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1101 (60%), Positives = 806/1101 (73%), Gaps = 60/1101 (5%)

Query: 1    MDDMDEGVGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIP-EGTSSDGSFQI 59
            +DDMD+   EV  ++ AEG+ LQ KE EY L+P+S +++L S EM IP EG   + S Q 
Sbjct: 5    LDDMDD---EVTTIDVAEGSHLQRKESEYLLKPDS-SSMLNSREMVIPGEGDYPESSPQE 60

Query: 60   LADMLEGKSVNRIVSPMDASENPCPH--SDSDAGIMVEELTVRKSNSSNLAIVGTSNHRE 117
               +LEGK+VN+ VS + A+E+ C       DAGIM+EELT+R  N +NLA+VG SN+R+
Sbjct: 61   FTGILEGKNVNKTVSSLAAAEHTCSGHLPVDDAGIMIEELTLRNYNGANLAVVGPSNNRD 120

Query: 118  RISTRHDRWQHLYQLGSGSGSGSSRGD---RGHGRTMLGAWEDVGDTSLHDFITQKPLND 174
            R+  R ++WQH++ L  G G+GSS  D   R +G+ M  AWEDVG +S  +F+ QK  + 
Sbjct: 121  RMQIRQNQWQHIHLLAGGQGTGSSVRDSVRRDNGQPMSSAWEDVGYSSFPEFLAQKQSSH 180

Query: 175  EHNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNA 234
            +HN + EQ  N EN  +SG+ LS G IRTK+LSKSGFSEFF+K +LKGKG++CRGP  + 
Sbjct: 181  DHNEVREQVTNCENRAVSGDTLSPGGIRTKILSKSGFSEFFIKNSLKGKGVICRGPARDG 240

Query: 235  FK-ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGART 293
            F  E R    TKA V TT+ SD +L ++    V S              ++GS   G   
Sbjct: 241  FGVEIRDSNITKAAVDTTVASDLSLSSSAKTAVPS--------------AHGSAGTGPCH 286

Query: 294  G-VPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTF 352
            G +P           SS  GVNLREWL A   K  ++E LYIFRQIV LVD  H+QGV  
Sbjct: 287  GPLP----------DSSHDGVNLREWLRAGHRKINKVESLYIFRQIVDLVDVSHSQGVAM 336

Query: 353  LDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASA 412
             +L+PS FKLL SNQV Y+G  +Q+E LE+A       +N    +RS E+ MF +   S 
Sbjct: 337  QNLRPSCFKLLPSNQVAYLGSSVQREMLENAVDQDVSLKNLLSGKRSLEKGMFPSISLSG 396

Query: 413  KKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN-EHHTNAGFGNYS 471
            KKQKF+ +MN  R W  F ++YG K+ETAN+S IN        +  N EH+ N  +    
Sbjct: 397  KKQKFSESMNTFRQWPQFSARYGIKLETANKSGINITRAQDLGSKFNEEHNQNTEYKIQR 456

Query: 472  KSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDS 531
            KSSS  VS T+QQ   S S++LEEKWY SP ELS GVCT SSNIY LGVL FEL G FDS
Sbjct: 457  KSSSQNVSYTSQQLLISASDRLEEKWYTSPMELSEGVCTFSSNIYCLGVLLFELLGSFDS 516

Query: 532  ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEV 591
            E+A AAA+SDLR RILPP+FLSENPKEAGFCLW LHPE  SRPTTREILQSEV +  QEV
Sbjct: 517  EKARAAAVSDLRHRILPPNFLSENPKEAGFCLWLLHPESSSRPTTREILQSEVISGLQEV 576

Query: 592  CAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKP 651
               +L SSI+Q+D +SELLLHFLI ++E+K   A+KLV +IR LEADI+EVERR   KK 
Sbjct: 577  HEGDLSSSIEQEDVDSELLLHFLILMKEQKHKHATKLVEDIRCLEADIEEVERRTSPKKS 636

Query: 652  LVDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQ 711
             +                    LS S    + I  A+E RLMRN++QLE AYFSMRS+IQ
Sbjct: 637  SL--------------------LSCSHK--TAIC-ASEKRLMRNISQLESAYFSMRSKIQ 673

Query: 712  LSDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLR 771
            L ++D+ TR+D DLL +REN + AQ++ E    TDRLG FF+GLCKYARYSKFEV+G+LR
Sbjct: 674  LPETDALTRSDKDLLLNRENFYQAQKNGEDLKVTDRLGTFFNGLCKYARYSKFEVRGILR 733

Query: 772  TGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKL 831
             G+F NSANVICS+SFDRDED+ AAAGVSKKIKIFEF+ALFNDSVD++YP +EM+N+SKL
Sbjct: 734  NGDFINSANVICSLSFDRDEDYLAAAGVSKKIKIFEFHALFNDSVDIHYPVIEMTNKSKL 793

Query: 832  SCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGS 891
            SC+CWNNYIKNYLAS DYDGVVKLWDA TGQ +S YI+H+KRAWSVDFS+V P KLASGS
Sbjct: 794  SCICWNNYIKNYLASTDYDGVVKLWDASTGQGLSQYIDHQKRAWSVDFSRVDPKKLASGS 853

Query: 892  DDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC 951
            DDCSVKLW+INEKN L TI+NIANVCCVQFSAHSSHLLAFGSADY+TYCYDLRNA++PWC
Sbjct: 854  DDCSVKLWSINEKNCLGTIRNIANVCCVQFSAHSSHLLAFGSADYKTYCYDLRNAKSPWC 913

Query: 952  VLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011
            +LAGH+KAVSYVKFLD+ TLV+ASTDN LK+WDL +TS TG S NACSLT SGHTNEKNF
Sbjct: 914  ILAGHDKAVSYVKFLDAETLVSASTDNSLKIWDLNQTSSTGLSMNACSLTLSGHTNEKNF 973

Query: 1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWR 1071
            VGLS ADGY+ CGSE+NEVYAYHRSLPMPITS+KFGSIDPISGKETDDDNG FVSSVCWR
Sbjct: 974  VGLSVADGYVTCGSETNEVYAYHRSLPMPITSHKFGSIDPISGKETDDDNGQFVSSVCWR 1033

Query: 1072 RRSDMVVAANSSGCIKVLQMV 1092
             +S+MVVAANS+GCIKVL+MV
Sbjct: 1034 GKSNMVVAANSTGCIKVLEMV 1054

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075074|ref|XP_002304547.1| predicted protein [Populus trichocarpa] gi|222841979|gb|EEE79526.1| predicted protein [Populus trichocarpa]

 Score = 1171 bits (3030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1101 (56%), Positives = 773/1101 (70%), Gaps = 93/1101 (8%)

Query: 4    MDEGVG-EVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPE-GTSSDGSFQILA 61
            MDEG+G EVA ++ AE A LQ KE EYS++P   +N+LES E  I   G   + SF +LA
Sbjct: 1    MDEGLGDEVALMDMAEEAHLQGKESEYSVKPPESSNLLESRETVIASAGDYPESSFHVLA 60

Query: 62   DMLEGKSVNRIVSP-MDASENPC--PHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRER 118
            D LEGK+ NR  SP MDAS+ PC  P S  DAG MVEEL VR  + SN A+VGTSN+R+R
Sbjct: 61   DKLEGKNGNRSASPPMDASKQPCSSPRSMDDAGNMVEELMVRNYDGSNSAVVGTSNNRQR 120

Query: 119  ISTRHDRWQHLYQLGSGSGSGSSRGD---RGHGRTMLGAWEDVGDTSLHDFITQKPLNDE 175
            +  R  +W HLYQ+G GS +G S  +   R  G+ +L    DV   S  D + QK L++E
Sbjct: 121  MQARQSQWPHLYQIGGGSVTGISCSNTLYRDSGQALL----DVQHPSSSDILVQKTLSNE 176

Query: 176  HNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAF 235
             N + EQ  +T+ +GL GN+ SHGS RTK+LSKSGFSEFFVK TLKGKGI+ RGPP ++ 
Sbjct: 177  RNEVSEQLVHTDFNGLLGNVSSHGSFRTKILSKSGFSEFFVKNTLKGKGIIYRGPPHDSL 236

Query: 236  KERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTG 294
            K      + + F   T+  SD  L          N S K V + ++  S+  L+L A+T 
Sbjct: 237  KLGPRDQNNERFAGGTLAASDTPL----------NLSAKTVTMTSSYASDTPLNLSAKTV 286

Query: 295  VPASCW-IGGLRQGSSDH-GVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTF 352
               S + I G      DH GV+LR+WLNA   K  ++E L IFR+IV LVDY H+QGV  
Sbjct: 287  TMTSSYGITGPSPSGYDHDGVSLRKWLNAGQLKANKVERLQIFRRIVDLVDYSHSQGVAL 346

Query: 353  LDLKPSSFKLLQSNQVKYIGPIIQKETLESA-SLDIPHSENYRLRRRSAEEEMFTTGIAS 411
             DL+PSSFKLLQSNQVKY+G  + ++ LES+   D P S+N+ +RRR  E+ MF+   A 
Sbjct: 347  PDLRPSSFKLLQSNQVKYLGSAVPRDMLESSMDQDTPCSDNHAVRRRPLEQGMFSFVTAF 406

Query: 412  AKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYS 471
            AKKQKF+ +MN+   W    +K+  K+E+ ++ +                     +G  +
Sbjct: 407  AKKQKFSESMNYISSWPQLSTKHSLKLESTSDGE---------------------YGIQA 445

Query: 472  KSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDS 531
            KSSS  +S T Q+Q T++ ++LEEKWY SPEE + G+C  +SNIY LG+L FEL GRFDS
Sbjct: 446  KSSSHELSKTGQRQLTAIVDRLEEKWYTSPEEFNDGICRIASNIYGLGILLFELLGRFDS 505

Query: 532  ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEV 591
            +RA A  MSDLR   L  +F        G+ +  LH        + EILQSE+ N  QEV
Sbjct: 506  DRAQAMVMSDLRK--LDSAF--------GYFILNLHHAHQQGNPSLEILQSELINGLQEV 555

Query: 592  CAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKP 651
             AEEL SSI+QDD+ESELL HFL+SL+E+KQN ASKLV +IR L+ DI+EVE        
Sbjct: 556  SAEELSSSINQDDAESELLFHFLVSLKEQKQNHASKLVEDIRCLDTDIEEVE-------- 607

Query: 652  LVDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQ 711
                       P R   +         +Q+SP    N+MRLM N++QLE AYFSMRS++Q
Sbjct: 608  -----------PYRLEAF---------SQVSPDFKTNDMRLMSNISQLESAYFSMRSEVQ 647

Query: 712  LSDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLR 771
            L+++D+T R DNDLLR+ EN ++ Q+ +E QN TD LG+FFDGLCKYARYSKFEV+G+LR
Sbjct: 648  LAETDATIRQDNDLLRNHENWYIEQEGEETQNTTDCLGSFFDGLCKYARYSKFEVRGLLR 707

Query: 772  TGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKL 831
            TG+F+NSANVICS+SFDRD D+FAA GVSKKIKIF+FN++FND VD++YP +EMSN SKL
Sbjct: 708  TGDFSNSANVICSLSFDRDADYFAAGGVSKKIKIFDFNSIFNDPVDIHYPVIEMSNESKL 767

Query: 832  SCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGS 891
            SC+CWN+YIKNYLAS  YDGVVKLWD  TGQ V  Y EHEKRAWSVDFSQV PTKLASGS
Sbjct: 768  SCICWNSYIKNYLASTGYDGVVKLWDVSTGQGVFQYNEHEKRAWSVDFSQVCPTKLASGS 827

Query: 892  DDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC 951
            DDCS        KNS++TI+NIANVCCVQFS+HS+HLLAFGSADYRTYCYDLRN RAPWC
Sbjct: 828  DDCS--------KNSISTIRNIANVCCVQFSSHSTHLLAFGSADYRTYCYDLRNCRAPWC 879

Query: 952  VLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011
            VLAGH+KAVSYVKFLDS TLVTASTDN LK+WDL +TS +  S +AC +T  GHTNEKNF
Sbjct: 880  VLAGHDKAVSYVKFLDSETLVTASTDNSLKIWDLNKTSSSSSSVSACIVTLGGHTNEKNF 939

Query: 1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWR 1071
            VGLS A+ YI CGSE+NEV+AYHRSLPMPITS+KFGSIDPISGKETDDDNGLFVSSVCWR
Sbjct: 940  VGLSVANDYITCGSETNEVFAYHRSLPMPITSHKFGSIDPISGKETDDDNGLFVSSVCWR 999

Query: 1072 RRSDMVVAANSSGCIKVLQMV 1092
             +SDMVVAANSSGC+KVLQMV
Sbjct: 1000 GKSDMVVAANSSGCLKVLQMV 1020

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452259|ref|XP_004143877.1| PREDICTED: protein SPA1-RELATED 2-like [Cucumis sativus] gi|449501807|ref|XP_004161464.1| PREDICTED: protein SPA1-RELATED 2-like [Cucumis sativus]

 Score = 1165 bits (3015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/1103 (57%), Positives = 777/1103 (70%), Gaps = 81/1103 (7%)

Query: 4    MDEGVGEVAPVNAAEGAPLQNK------EIEYSLRPESCNNVLESGEMAIP-EGTSSDGS 56
            M+E   ++  ++A E A +QNK      E EY L+PE+ NNV+ES EM  P +G  S   
Sbjct: 1    MEEMSEDMTLLDATEDAHVQNKVRQDAQENEYVLKPEN-NNVVESQEMVTPVDGGYSQYY 59

Query: 57   FQILADMLEGKSVNRIVSPMDASENP--CPHSDSDAGIMVEELTVRKSNSSNLAIVGTSN 114
                 D+LEGK++NR  + +  S+ P   PH   DAG+MVEELTV+  N SNLAI+G S+
Sbjct: 60   PHEFTDILEGKNLNRCKNNLKLSDQPECSPHCMDDAGVMVEELTVKNHNGSNLAIIGPSD 119

Query: 115  HRERISTRHDRWQHLYQLGSGSGSGSSRGD---RGHGRTMLGAWEDVGDTSLHDFITQKP 171
            +R R+ +RH +WQHLYQLGSGSGSGSSR D   + HG  +    E+ G TS  +    + 
Sbjct: 120  NRARLLSRHSQWQHLYQLGSGSGSGSSRIDTSYKNHGLAVTPGLENGGYTSFPEAFAGRA 179

Query: 172  LNDEHNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPP 231
              ++    LE+    +N G  G+  + GSIRTK+LSKSGF EFFVK+TLKGKGI+ RG  
Sbjct: 180  SRNDCGEELEEMKAVDNKG--GD--AQGSIRTKILSKSGFPEFFVKSTLKGKGIIRRGVQ 235

Query: 232  LNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA 291
            L  F            V    P +A  + AG + +AS++S               L    
Sbjct: 236  LEGFN-----------VEHRNPKNA--RIAGGITLASDSS---------------LQHDV 267

Query: 292  RTGVPASCWIGGLR-QGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGV 350
            +  +PA       + +GSS  G++LREWL     K  +I+CLYIFR +V LV+  H +GV
Sbjct: 268  KPVIPALYRKSEHKHRGSSLDGISLREWLKVPNQKVNKIKCLYIFRHVVELVERSHGRGV 327

Query: 351  TFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASL-DIPHSENYRLRRRSAEEEMFTTGI 409
               DL+PSSF++L +NQV+Y+G  IQ +T ES  + D   S+++  R+R  E+  F +  
Sbjct: 328  LLHDLRPSSFRILTTNQVRYVGTFIQSKTPESLMVKDGQCSDSHLTRKRPLEQGNFLSFG 387

Query: 410  ASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGN 469
             S KKQK   NM+     S FP K G  +ETAN  D N+    +   + NEH    G   
Sbjct: 388  GSPKKQKDAQNMSLMARHSYFPFKSGTSLETANTRDCNK----NVSENYNEHFVEQG--G 441

Query: 470  YSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRF 529
            ++K +     ++AQ   TS S+ LEE WY SPEEL  G C+  SNI+SLGVL FEL G+F
Sbjct: 442  WNKPAGLRAYDSAQ---TSASDLLEESWYVSPEELMTGCCSAKSNIFSLGVLLFELLGKF 498

Query: 530  DSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ 589
            +S+ ALAAAMS+LRDRILPPSFL++N KE GFCLW LHPEP SRPT REIL+SE+ N   
Sbjct: 499  ESDGALAAAMSNLRDRILPPSFLADNLKEVGFCLWLLHPEPASRPTAREILESELINGMP 558

Query: 590  EVCAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLK 649
             V   EL +SID++D+ESELLL FL SL E+KQ QASKLV +IR LE+DI+EV +RH   
Sbjct: 559  SVPEPELSTSIDEEDAESELLLQFLTSLNEQKQKQASKLVEDIRYLESDIEEVNKRH--- 615

Query: 650  KPLVDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQ 709
                              RY N  +     Q+  IS  NE R+ +N++QLE AYFSMRS+
Sbjct: 616  ------------------RYLNSDMC---PQVYRISHTNEERIAKNISQLEGAYFSMRSK 654

Query: 710  IQLSDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGM 769
            +  S++DS  R DNDLLR REN +L Q+D E+ + +DRLGAFFDG CKY+RYSKFEV+G+
Sbjct: 655  VDPSENDSAIRTDNDLLRARENCYLPQKDDEMSH-SDRLGAFFDGFCKYSRYSKFEVRGV 713

Query: 770  LRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRS 829
            LR G+FN+S+NVICS+SFDRDE++FAAAGVSKKI+IFEFN++F+DSVD++YPAVEM NRS
Sbjct: 714  LRNGDFNSSSNVICSLSFDRDEEYFAAAGVSKKIRIFEFNSVFSDSVDIHYPAVEMFNRS 773

Query: 830  KLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLAS 889
            KLSC+CWN YIKNYLAS DYDGVVKLWDA  GQ VS + EH KRAWSVDFSQVHPTKLAS
Sbjct: 774  KLSCICWNGYIKNYLASTDYDGVVKLWDATVGQEVSQFNEHNKRAWSVDFSQVHPTKLAS 833

Query: 890  GSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP 949
            GSDDCSVKLW+INEKN L TI+NIANVCCVQFSAHS+HLLAFGSADYRTYC+DLRN +AP
Sbjct: 834  GSDDCSVKLWSINEKNCLGTIRNIANVCCVQFSAHSTHLLAFGSADYRTYCFDLRNTKAP 893

Query: 950  WCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009
            WCVL GHEKAVSYVKFLDSGTLV+ASTDN LKLWDL +T+ TG ST ACSLTFSGHTNEK
Sbjct: 894  WCVLGGHEKAVSYVKFLDSGTLVSASTDNTLKLWDLNKTNPTGLSTKACSLTFSGHTNEK 953

Query: 1010 NFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVC 1069
            NFVGLS ++GYIACGSE+NEVYAYHRSLPMP+TSYKFGSIDPISGKET+DDNG FVSSVC
Sbjct: 954  NFVGLSVSNGYIACGSETNEVYAYHRSLPMPMTSYKFGSIDPISGKETEDDNGQFVSSVC 1013

Query: 1070 WRRRSDMVVAANSSGCIKVLQMV 1092
            WR +SD V+AANSSGCIKVLQMV
Sbjct: 1014 WRGKSDTVIAANSSGCIKVLQMV 1036

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540404|ref|XP_003538679.1| PREDICTED: protein SPA1-RELATED 2-like [Glycine max]

 Score = 1094 bits (2830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1148 (53%), Positives = 772/1148 (67%), Gaps = 107/1148 (9%)

Query: 5    DEGVGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQILADML 64
            +E V E   +  AE    QNK+   S  PE C  +L+S E  IP     D S QI     
Sbjct: 3    EELVDEATQLEVAEETQRQNKD---SSNPE-CQKILKSQEAFIP--VKQDYS-QIPPREY 55

Query: 65   EGKSVNRIVSPMDASENP-CPHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERISTRH 123
            +GK+V   +   D S++P       DA  M+EELTV+  N S+L I GTSN+RE++  + 
Sbjct: 56   DGKNVVEGIDHADTSQHPRVSLFMDDADAMIEELTVKSYNGSSLDI-GTSNNREQMYNQQ 114

Query: 124  DRWQHLYQLGSGSGSGSSRGDRGHGRTMLG---AWEDVGDTSLHDFITQKPLNDEHNTIL 180
            + WQ+LYQL S SG G+S  D G   ++     A ED+G +S  + + +K L+D  +  +
Sbjct: 115  NHWQNLYQLASNSGIGNSLSDIGTRNSVQATSSAREDIGSSSFPEMLARKSLSDGQSNAM 174

Query: 181  EQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAF----K 236
            E  A+ EN G +G++  H   RTK++S+SGF+EFF+K TL+GKGIV RGP  + F    +
Sbjct: 175  EHLASAENKGGAGDV--HQGTRTKIISQSGFAEFFIKNTLRGKGIVYRGPSSDGFCVQSR 232

Query: 237  ERRGM-----IDTKAFVTTTMPSDAALKAAGAMM-------VASNASPKPVGV------- 277
            E+  M      D     T        +K    ++       + ++ +P   G+       
Sbjct: 233  EQNRMKIGIDADQNRMKTGIGADQNRMKTVIDVIQNRLKTGIDADQNPMKTGIDQSRMKT 292

Query: 278  ------------------------GTAVVSNGSLDLGARTG-VPASCWIGGL-RQGSSD- 310
                                    GT + SN S+  G++T   P+ C  G + R G S+ 
Sbjct: 293  GIDTDQNQMKTGIGTDQKQMKTSIGTHLNSNQSVGYGSKTAKFPSYC--GAMPRSGRSEC 350

Query: 311  HGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY 370
             GV LREWL    HK  ++E L IFR+IV LV   H+QGV   +L PS  KL  SNQV Y
Sbjct: 351  DGVTLREWLKHGNHKANKVESLNIFRKIVDLVGNSHSQGVALHNLCPSYIKLTPSNQVMY 410

Query: 371  IGPIIQKETLES-ASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSL 429
            +G  +QK+ ++S  + ++ H +N  +R+R +E+    +    +KKQKFN N+  +     
Sbjct: 411  LGLPVQKQMVDSVVNSEVVHLDNSFIRKRLSEQVTLPSLDMGSKKQKFNENVRVT----- 465

Query: 430  FPSKYGNK--IETANESDINEVSIPHSHNDTNEHHTNAGFGNYS---KSSSPLVSNTAQQ 484
                 G    +ETA++  ++  ++  S +  NE+     F  Y+    SS P VSN  Q+
Sbjct: 466  -----GGDLCLETASDRKLHSHTVG-SQDYYNEYEEGTQFSKYNIGRMSSIPRVSNAGQR 519

Query: 485  QSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRD 544
              TS  E+ E KWY SPE    G  TTSSNIY LGVL FEL G FDSER   AAMSDLR 
Sbjct: 520  PLTSC-EKFENKWYTSPE----GGYTTSSNIYCLGVLLFELLGHFDSERTHIAAMSDLRH 574

Query: 545  RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDD 604
            RILPP FLSENPKEAGFCLW LHPEP SRP+TREILQSE+ N  QE+ +EEL SSIDQ+D
Sbjct: 575  RILPPIFLSENPKEAGFCLWLLHPEPSSRPSTREILQSELINGLQELFSEELSSSIDQED 634

Query: 605  SESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVDPSLQNESAPS 664
            +ESELLLHFL+ L+E+KQN A KLV +I+ LE+DI+EV+RRH  +K L   SL  E  PS
Sbjct: 635  AESELLLHFLVLLKEQKQNNAFKLVEDIKCLESDIEEVDRRHDSRKSL--ESLSLEMLPS 692

Query: 665  RENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADND 724
                            +SPIS++NE+RLMRN+  LE AYFSMRS++QLS++D++T  D D
Sbjct: 693  ----------------ISPISNSNEVRLMRNICHLESAYFSMRSKLQLSETDASTHPDKD 736

Query: 725  LLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICS 784
            +LR+REN  +A++ +E Q   D LGAFFDGLCKYARY KFEV+G+LR  +FNN ANVICS
Sbjct: 737  ILRNRENWNVAEKSEE-QPKKDTLGAFFDGLCKYARYCKFEVRGVLRNADFNNPANVICS 795

Query: 785  ISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYL 844
            +SFDRD D+FA+AG+SKKIKIFEF+AL NDSVD++YPAVEMSNRSKLSCVCWNNYIKNYL
Sbjct: 796  LSFDRDADYFASAGISKKIKIFEFSALCNDSVDIHYPAVEMSNRSKLSCVCWNNYIKNYL 855

Query: 845  ASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK 904
            AS DYDG+VKLWDA TGQ  S + EHEKRAWSVDFS V PTK ASGSDDC+VKLW+I+E+
Sbjct: 856  ASTDYDGIVKLWDASTGQEFSQFTEHEKRAWSVDFSAVCPTKFASGSDDCTVKLWSISER 915

Query: 905  NSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVK 964
            N L TI+N+ANVCCVQFSAHSSHLLAFGSADY TYCYDLRN R+PWCVLAGH KAVSYVK
Sbjct: 916  NCLGTIRNVANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLAGHRKAVSYVK 975

Query: 965  FLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACG 1024
            FLDS TLV+ASTDN LK+WDL +TS  G S NACSLT SGHTNEKNFVGLS ADGYIACG
Sbjct: 976  FLDSETLVSASTDNTLKIWDLNKTSPVGASINACSLTLSGHTNEKNFVGLSVADGYIACG 1035

Query: 1025 SESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSG 1084
            SE+NE+Y Y+RSLPMPITS+KFGSIDPISGK+TDDDNG FVSSVCWR +SDM++AANSSG
Sbjct: 1036 SETNEIYTYYRSLPMPITSHKFGSIDPISGKDTDDDNGQFVSSVCWRGKSDMLIAANSSG 1095

Query: 1085 CIKVLQMV 1092
            C+KVLQMV
Sbjct: 1096 CVKVLQMV 1103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527668|ref|XP_003532430.1| PREDICTED: protein SPA1-RELATED 2-like [Glycine max]

 Score = 1091 bits (2821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1092 (54%), Positives = 726/1092 (66%), Gaps = 97/1092 (8%)

Query: 14   VNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQILADMLEGKSVNRIV 73
            +   EG   Q K+  +SL PE             P+       +   + + + K+V    
Sbjct: 5    LEVGEGVQHQTKDDGFSLNPE------------FPKILKPQEIYTSYSHISQDKNV---- 48

Query: 74   SPMDASENPCPHSDSD-AGIMVEELTVRKSNSSNLAIVGTSNHRERISTRHDRWQHLYQL 132
              ++A E+  P   SD AG MVEELTV+  N S L I GT N+   +     +W+H+YQ 
Sbjct: 49   --VEAREHLHPSLFSDGAGAMVEELTVKSYNGSRLHI-GTLNNPGPLHNSRSQWRHIYQP 105

Query: 133  GSGSGSGSS-RGDRGHGRTMLGAWEDVGDTSLHDFITQKPLNDEHNTILEQ-------SA 184
               SG GS     R        AWED+G TS  D + +KP+NDE   +++        + 
Sbjct: 106  VGDSGMGSDCIIARKSVEATSSAWEDIGSTSFRDMLDRKPVNDEQGHVMQHLSTDVHTAE 165

Query: 185  NTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDT 244
            + E++G +     H  I+TK++ KSGF+E+  ++TLKGKG+VC+GP  N           
Sbjct: 166  HKEDEGHA-----HEGIQTKVIHKSGFAEYSGRSTLKGKGVVCKGPSSN----------- 209

Query: 245  KAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGL 304
                             G  + + + +P   G+ T + SN     G +T        G  
Sbjct: 210  -----------------GLYIESRDQNPIKSGIDTQMDSNALPSSGLKTAKSPHNATGPG 252

Query: 305  RQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ 364
              GS   GV LREWL +R HK  + + L IFR+IV LVD  H +GV   +L PS  KLL 
Sbjct: 253  SGGSDTDGVTLREWLKSRHHKRSKTDHLSIFRKIVDLVDGSHFEGVAMRNLYPSYIKLLP 312

Query: 365  SNQVKYIGPIIQKETLES-ASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNF 423
            SNQV Y+G   QK+TL+S A+ ++   +N  +R+R +E  +  +     KKQKFN N   
Sbjct: 313  SNQVMYLGLPAQKQTLDSVANSEVLQLDNSFIRKRLSETVISPSLNLQLKKQKFNENARV 372

Query: 424  SRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYS---KSSSPLVSN 480
            +  WS  P +    ++ AN+  +N V    S +  NE+  +  F  ++    S  P +S+
Sbjct: 373  AGDWSQCPPRTDLYLQIANDIKVNAVG---SQDYYNEYKEDIQFSKHNIGRMSRIPHISS 429

Query: 481  TAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMS 540
              Q Q TS++E LE+KWYASPE    G CTTSSNIY LGVL FEL   FDSERA  AAMS
Sbjct: 430  AGQLQLTSLNEGLEDKWYASPE----GGCTTSSNIYCLGVLLFELLNHFDSERAHIAAMS 485

Query: 541  DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSI 600
            +LR RILP  FLSE P EAGFCLW +HPEP SRPT REILQSEV N   EV  EEL SS+
Sbjct: 486  NLRHRILPSVFLSEYPMEAGFCLWMMHPEPSSRPTLREILQSEVINGIHEVYCEELSSSL 545

Query: 601  DQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVDPSLQNE 660
            +QDD+ESELLLHFLISL+E+K   A+KL  EIR LE+D+KEVERRH L+K L+       
Sbjct: 546  NQDDAESELLLHFLISLKEQKHMDANKLAEEIRCLESDVKEVERRHDLRKSLL------- 598

Query: 661  SAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTR 720
              PS+                S IS+ANE+RLM+ + +LE AYFSMRS+I+L ++D+ T 
Sbjct: 599  --PSK----------------SIISNANELRLMKIIPRLESAYFSMRSKIKLPETDTATH 640

Query: 721  ADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSAN 780
             D D+L + +N   AQ+D E    TD LGAFFD LCKYARYSKFEV+G+LR  +FNN AN
Sbjct: 641  PDKDILINHDNWCGAQKDMEQHKATDALGAFFDSLCKYARYSKFEVRGILRNTDFNNPAN 700

Query: 781  VICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI 840
            VICS+SFDRDED+FAAAG+SKKIKIFEFNALFNDS+D++YP VEMSNRS+LSCVCWNNYI
Sbjct: 701  VICSLSFDRDEDYFAAAGISKKIKIFEFNALFNDSIDIHYPVVEMSNRSRLSCVCWNNYI 760

Query: 841  KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
            +NYLAS DYDG VKLWDA TGQ  S + EHEKRAWSVDFS + PTK ASGSDDCSVKLWN
Sbjct: 761  QNYLASTDYDGAVKLWDANTGQGFSRFTEHEKRAWSVDFSLLCPTKFASGSDDCSVKLWN 820

Query: 901  INEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAV 960
            INEKNSLATI+N+ANVCCVQFS HSSHLLAFGSADY  YCYDLRN R PWCVLAGH KAV
Sbjct: 821  INEKNSLATIRNVANVCCVQFSTHSSHLLAFGSADYSAYCYDLRNLRNPWCVLAGHRKAV 880

Query: 961  SYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGY 1020
            SYVKFLDS TLV+ASTDN LK+WDL +TS  GPST+ACSLT SGHTNEKNFVGLS ADGY
Sbjct: 881  SYVKFLDSETLVSASTDNMLKIWDLNKTSPVGPSTSACSLTLSGHTNEKNFVGLSVADGY 940

Query: 1021 IACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAA 1080
            IACGSE+NEVY YH+SLPMP+TS++FGSIDPISG+ETDDDNGLFVSSVCWR +SDMVVAA
Sbjct: 941  IACGSETNEVYVYHKSLPMPVTSHRFGSIDPISGEETDDDNGLFVSSVCWRGKSDMVVAA 1000

Query: 1081 NSSGCIKVLQMV 1092
            NSSGCIKVLQMV
Sbjct: 1001 NSSGCIKVLQMV 1012

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495711|ref|XP_003516717.1| PREDICTED: protein SPA1-RELATED 2-like [Glycine max]

 Score = 1090 bits (2818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1160 (53%), Positives = 781/1160 (67%), Gaps = 102/1160 (8%)

Query: 4    MDEG-VGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQI--- 59
            MDE  V E   +  AE +  QNK+   S  PE C  +L+S E  IP     D S QI   
Sbjct: 1    MDEDFVDEATQLEVAEESQRQNKD---SPHPE-CRKILKSLEAFIP--VKQDYS-QIPPR 53

Query: 60   -LADMLEGKSVNRIVSPMDASENPCPHSD---SDAGIMVEELTVRKSNSSNLAIVGTSNH 115
                +L GK+V   +   D S++P  H      DA +MVEELTV+  N S+L I GTSN+
Sbjct: 54   EYDGILHGKNVVEGIDHADTSQHP--HVSLFMDDADVMVEELTVKSYNGSSLDI-GTSNN 110

Query: 116  RERISTRHDRWQHLYQLGSGSGSGSSRGDRGHGRTMLG---AWEDVGDTSLHDFITQKPL 172
            RE+I  R + WQ+LYQL S SG G+S  D G   ++     A ED+G +S  + + +K L
Sbjct: 111  REQIYNRQNHWQNLYQLASNSGIGNSLSDIGTRNSVPATSSAREDIGSSSFPEMLARKSL 170

Query: 173  NDEHNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPL 232
            +D  + ++E  A+ EN   +G++      R K++S+SGF+EFF+K TL+GKGIV +GP  
Sbjct: 171  SDGQSNVMEHLASAENKEGAGDV--RQGTRKKIISQSGFAEFFIKNTLRGKGIVYKGPSS 228

Query: 233  NAF-------------------KERRGMIDTKAFVTTTMPSD----------------AA 257
            + F                   + + G+   +  + T + +D                  
Sbjct: 229  DGFCVQSREQNWMKIGIDADQNRMKTGIGADQNRLKTVIDADQNQLKTGIDADQNRLKTG 288

Query: 258  LKAAGAMMVASNASPK--------------PVGVGTAVVSNGSLDLGARTG-VPASCWIG 302
            + A    M AS  + +                G+ T + SN S+  G++T   P+ C  G
Sbjct: 289  IDADQNQMKASIGTDQNQMKNHSGTDQKQMKTGIVTHLNSNQSVGYGSKTAKFPSYC--G 346

Query: 303  GL-RQGSSDH-GVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSF 360
             + R G SD  GV LREWL    HK  ++E L IFR+IV LVD  H+QGV   +L PS  
Sbjct: 347  AMPRSGRSDCVGVTLREWLKHGHHKASKVESLNIFRKIVDLVDICHSQGVALHNLCPSYI 406

Query: 361  KLLQSNQVKYIGPIIQKETLESA-SLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNH 419
            KL  SNQ+ Y+G  +QK+ ++S  + ++ H +N  +R+R +E+  F +    +KK+KFN 
Sbjct: 407  KLSPSNQIMYLGLPVQKQMVDSVVNSEVVHLDNSFIRKRLSEQVTFPSLDMGSKKKKFNE 466

Query: 420  NMNFSRWWSLFPSKYGNKI--ETANESDINEVSIPHSHNDTNEHHTNAGFGNYS---KSS 474
            N+  +          G  +  ETA++  ++  ++  S +  NE+     F  Y+    SS
Sbjct: 467  NVRVT----------GGDLCLETASDRKLHSHTVG-SQDYYNEYEEGTQFSKYNIGRMSS 515

Query: 475  SPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERA 534
             P VSN  Q   TS  E+ E KWY SPE   GG  TTSSNIY LGVL FEL G FDSER 
Sbjct: 516  IPRVSNAGQMPLTSC-EKFENKWYTSPE---GGY-TTSSNIYCLGVLLFELLGHFDSERT 570

Query: 535  LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAE 594
              AAMSDLR RILPP FLSENPKEAGFCLW LHPEP SRP+TREILQSE+ N  QE+ +E
Sbjct: 571  HIAAMSDLRHRILPPIFLSENPKEAGFCLWLLHPEPSSRPSTREILQSELINGLQELFSE 630

Query: 595  ELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVD 654
            EL SSIDQ+D+ESELLLHFL+ L+E+KQN A KLV EI+ LE+DI+EVERRH  +K LV 
Sbjct: 631  ELSSSIDQEDAESELLLHFLVLLKEQKQNNAFKLVEEIKCLESDIEEVERRHDSRKSLVS 690

Query: 655  PSLQNESAPSRENRYFNEQLSSSEA--QLSPISDANEMRLMRNLNQLERAYFSMRSQIQL 712
              LQN+ +  +E     ++  S E    +SPIS++N++RLMR++  LE AYFS RS++QL
Sbjct: 691  SGLQNDYSCQKEIMPLKKESLSLEMLPSISPISNSNKVRLMRSICHLEGAYFSTRSKLQL 750

Query: 713  SDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRT 772
            S++D++T  D D+LR+REN  +AQ+ +E Q   D LG FFDGLCKYARY KFEV+G+LR 
Sbjct: 751  SETDASTHPDKDILRNRENQNVAQKSEE-QPKKDTLGVFFDGLCKYARYCKFEVRGVLRN 809

Query: 773  GEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLS 832
             +FNN ANVICS+SFDRD D+FA+AG+S+KIKIFEF+AL NDSVD++YPAVEMSNRSKLS
Sbjct: 810  VDFNNPANVICSLSFDRDADYFASAGISRKIKIFEFSALCNDSVDIHYPAVEMSNRSKLS 869

Query: 833  CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
            CVCWNNYIKNYLAS DYDG+VKLWDA TGQ  S + EHEKRAWSVDFS V PTK ASGSD
Sbjct: 870  CVCWNNYIKNYLASTDYDGIVKLWDASTGQEFSQFTEHEKRAWSVDFSAVCPTKFASGSD 929

Query: 893  DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
            DC+VKLW+I+E+N L TI+N ANVCCVQFSAHSSHLLAFGSADY TYCYDLRN R+PWCV
Sbjct: 930  DCTVKLWSISERNCLGTIRNAANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCV 989

Query: 953  LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012
            LAGH KAVSYVKFLDS TLV+ASTDN LK+WDL +TS  G S NACSLT SGHTNEKNFV
Sbjct: 990  LAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGASINACSLTLSGHTNEKNFV 1049

Query: 1013 GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR 1072
            GLS ADGYIACGSE+NEVY Y+RSLPMP+TS+KFGSIDPISGK+TDDDNG FVSSVCWR 
Sbjct: 1050 GLSVADGYIACGSETNEVYTYYRSLPMPVTSHKFGSIDPISGKDTDDDNGQFVSSVCWRG 1109

Query: 1073 RSDMVVAANSSGCIKVLQMV 1092
            +S M++AANSSGC+KVLQMV
Sbjct: 1110 KSGMLIAANSSGCVKVLQMV 1129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809331|ref|XP_002872549.1| hypothetical protein ARALYDRAFT_911432 [Arabidopsis lyrata subsp. lyrata] gi|297318386|gb|EFH48808.1| hypothetical protein ARALYDRAFT_911432 [Arabidopsis lyrata subsp. lyrata]

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/1098 (52%), Positives = 722/1098 (65%), Gaps = 76/1098 (6%)

Query: 4    MDEG-VGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQILAD 62
            MDEG VG+V+ ++ A+ A LQ K  E S +PE+C         A  E  S D S+ ++A+
Sbjct: 2    MDEGSVGDVSRIDEADVAHLQFKNSEQSFKPENCEVREVKDVQAQKEAGSPDCSYGVIAE 61

Query: 63   MLEGKSVNRIVSPMDASEN-PCPHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERIST 121
             L+GK+ +    P++   N PC  S  +AG +VEELTV+    S++AIVG  + R R+  
Sbjct: 62   FLDGKNGD----PVEQIGNEPC-SSRQNAGDVVEELTVKTCEGSSMAIVGRPSSRARLEM 116

Query: 122  RHDRWQHLYQLGSGSGSGSSRGDRGHGRTMLGAWEDVGDTSLHDFITQK----PLNDEHN 177
               ++ H + L       SS   + + R  +G   + G  SL +  T +     +N E N
Sbjct: 117  NRSQFLHRFPLDGDLPGSSSMSKKENNRETIGILRNAGKMSLPETSTGQLAIVSVNGEAN 176

Query: 178  TILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKE 237
             +L+   N E + +    LSH  I+TKMLS+SGFS+FFV+ TLKGKG+  RGPP N  K 
Sbjct: 177  ELLK---NVERNTVPVEALSHEGIKTKMLSQSGFSQFFVRKTLKGKGVTFRGPPQNISKA 233

Query: 238  RRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA 297
                  T A             ++G+ +V SN   K          +G   L +    P+
Sbjct: 234  SNMDQQTVA-------------SSGSPLVISNTPAKISSSIPLAAYDGLPCLPSNASKPS 280

Query: 298  SCW-IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLK 356
            SC     + +G    G++LREWL +   +  + EC+YIFRQIV  VD  H+QGV   DL+
Sbjct: 281  SCGSPSDIHRGCGGEGLSLREWLKSERQEVNKAECMYIFRQIVDHVDCSHSQGVVLCDLR 340

Query: 357  PSSFKLLQSNQVKYIGPIIQKETLESA--SLDIPHSENYRLRRRSAEEEMFTTGIASAKK 414
            PSSFK+ + N +KY+G   Q+E+  S      +   EN  +RRR  +    ++    AKK
Sbjct: 341  PSSFKIFKENAIKYVGSGSQRESFYSNMNKETLSQLENPLVRRRLGDT---SSPSIPAKK 397

Query: 415  QKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSS 474
            QK       SR W +F    G  I+T N     + +I   H  +++ H            
Sbjct: 398  QKSGGPS--SRQWPMFQRAGGVNIQTEN----GDGAIHEFHYRSSQPH------------ 439

Query: 475  SPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERA 534
                 +TA +  TSVSEQLEEKWYASPEEL G + + SSNIYSLG+L +EL  +F  ERA
Sbjct: 440  ----GSTAARPFTSVSEQLEEKWYASPEELRGDMRSASSNIYSLGILLYELLSQFQCERA 495

Query: 535  LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAE 594
              AAMSD+R RILPP FLSENPKEAGFCLW LHPE   RP+TR+ILQSEV N   ++ AE
Sbjct: 496  REAAMSDIRHRILPPKFLSENPKEAGFCLWLLHPESSCRPSTRDILQSEVVNGIPDLYAE 555

Query: 595  ELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVD 654
             L  SI+Q+D+ESELL HFLI  +E++Q  A+KL+ EI S+EADI+E+ +R     P   
Sbjct: 556  GLSLSIEQEDTESELLQHFLILSQEKRQKHAAKLMEEIASVEADIEEIVKRRCAIGP--- 612

Query: 655  PSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSD 714
                                    +  SP S   EMRL+RN+NQLE  YF+ R    L +
Sbjct: 613  ------------------LSLEEASSSSPASSVPEMRLIRNINQLESTYFAARIDAHLPE 654

Query: 715  SDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGE 774
            +    R D DLLR+R+N     ++ E  +  DR+GAFFDGLCKYARYSKFE +G+LRT E
Sbjct: 655  ARYRLRPDRDLLRNRDNTVAEVENSETWSSDDRVGAFFDGLCKYARYSKFETRGVLRTSE 714

Query: 775  FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCV 834
             N+++NVICS+ FDRDED+F  AGVSKKIKI+EFN+LFN+SVD++YPAVEM NRSKLS V
Sbjct: 715  LNSTSNVICSLGFDRDEDYFVTAGVSKKIKIYEFNSLFNESVDIHYPAVEMPNRSKLSGV 774

Query: 835  CWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC 894
            CWNNYI+NYLAS+DYDG+VKLWD  TGQ +SH+IEHEKRAWSVDFS+  PTKLASGSDDC
Sbjct: 775  CWNNYIRNYLASSDYDGIVKLWDVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDC 834

Query: 895  SVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA 954
            SVKLWNINE+N L TI+NIANVCCVQFS  SSHLLAFGS+D+RTYCYDLRN R PWC+L+
Sbjct: 835  SVKLWNINERNCLGTIRNIANVCCVQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCILS 894

Query: 955  GHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGL 1014
            GH KAVSY KFLD+ TLVTASTDN LKLWDLK+T+H G STNACSLTF GHTNEKNFVGL
Sbjct: 895  GHNKAVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGL 954

Query: 1015 STADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRS 1074
            ST+DGYIACGSE+NEVYAYHRSLPMPITSYKFGSIDPISGKE ++DN LFVSSVCWR+RS
Sbjct: 955  STSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCWRKRS 1014

Query: 1075 DMVVAANSSGCIKVLQMV 1092
            +MVV+A+S+G IKVLQ+V
Sbjct: 1015 NMVVSASSNGSIKVLQLV 1032

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145340093|ref|NP_192849.4| protein SPA1-related 2 [Arabidopsis thaliana] gi|223635833|sp|Q9T014.2|SPA2_ARATH RecName: Full=Protein SPA1-RELATED 2 gi|332657574|gb|AEE82974.1| protein SPA1-related 2 [Arabidopsis thaliana]

 Score = 1041 bits (2691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1100 (52%), Positives = 720/1100 (65%), Gaps = 76/1100 (6%)

Query: 4    MDEG-VGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIP-EGTSSDGSFQILA 61
            MDEG VG+V+ ++ A+ A LQ K  E S +PE+   V E  E+ +  E  S D S+ ++A
Sbjct: 2    MDEGSVGDVSRIDEADVAHLQFKNSEQSFKPENIE-VREVKEVQVQREAGSPDCSYGVIA 60

Query: 62   DMLEGKSVNRIVSPMDASENPCP--HSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERI 119
            D L+GK+    V  +     PC    + +D G +VEELTV+    S++AIVG  + R R+
Sbjct: 61   DFLDGKNGGDHVELI--GNEPCSSRQNTNDEGDVVEELTVKTCEGSSMAIVGRPSSRARL 118

Query: 120  STRHDRWQHLYQLGSGSGSGSSRGDRGHGRTMLGAWEDVGDTSLHDF----ITQKPLNDE 175
                 ++ H + L       SS   +   R  +    + G  SL +     +    +N E
Sbjct: 119  EMNRSQFLHRFPLDGDLPGSSSMSKKVIDRGTVSILRNAGKMSLPETSNGQLAIIAVNGE 178

Query: 176  HNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAF 235
             N   E   N E + +    LSH  I+TKMLS+SGFS+FFV+ TLKGKG+  RGPP N  
Sbjct: 179  AN---EHLTNVERNPVPVEALSHEGIKTKMLSQSGFSQFFVRKTLKGKGVTFRGPPNNRS 235

Query: 236  KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV 295
            K R     T A             ++G+ +V +N S K          +G   L + T  
Sbjct: 236  KARNMDQQTVA-------------SSGSALVIANTSAKISSSIPLAAYDGLPCLPSNTSK 282

Query: 296  PASCW-IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLD 354
            P+SC       +G    G++LREWL +   +  + EC+YIFRQIV  VD  H+QGV   D
Sbjct: 283  PSSCANPSDTHRGCGGEGLSLREWLKSERQEVNKAECMYIFRQIVDHVDCSHSQGVVLCD 342

Query: 355  LKPSSFKLLQSNQVKYIGPIIQKETLESA--SLDIPHSENYRLRRRSAEEEMFTTGIASA 412
            L+PSSFK+ + N VKY+    Q+E+ +S      +   EN  +RRR  +    +     A
Sbjct: 343  LRPSSFKIFKENAVKYVVSGSQRESFDSNMNKETLSQLENPLVRRRLGDTSSLSI---PA 399

Query: 413  KKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSK 472
            KKQK +     SR W +F    G  I+T N    N+ +I   H  +++ H        S 
Sbjct: 400  KKQKSSGPS--SRQWPMFQRAGGVNIQTEN----NDGAIQEFHFRSSQPHC-------ST 446

Query: 473  SSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSE 532
             + P          TSVSEQLEEKWYASPEEL G + + SSNIYSLG+L +EL  +F  E
Sbjct: 447  VACPF---------TSVSEQLEEKWYASPEELRGDMRSASSNIYSLGILLYELLSQFQCE 497

Query: 533  RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVC 592
            RA  AAMSD+R RILPP FLSENPKEAGFCLW LHPE   RP+TR+ILQSEV N   ++ 
Sbjct: 498  RAREAAMSDIRHRILPPKFLSENPKEAGFCLWLLHPESSCRPSTRDILQSEVVNGIPDLY 557

Query: 593  AEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPL 652
            AE L  SI+Q+D+ESELL HFL   +E++Q  A  L+ EI S+EADI+E+ +R     P 
Sbjct: 558  AEGLSLSIEQEDTESELLQHFLFLSQEKRQKHAGNLMEEIASVEADIEEIVKRRCAIGP- 616

Query: 653  VDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQL 712
              PSL                     +  SP S   EMRL+RN+NQLE AYF+ R    L
Sbjct: 617  --PSL------------------EEASSSSPASSVPEMRLIRNINQLESAYFAARIDAHL 656

Query: 713  SDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRT 772
             ++    R D DLLR+ +N     ++ E  +  DR+GAFFDGLCKYARYSKFE +G+LRT
Sbjct: 657  PEARYRLRPDRDLLRNSDNTVAEVENSETWSSDDRVGAFFDGLCKYARYSKFETRGVLRT 716

Query: 773  GEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLS 832
             E NN++NVICS+ FDRDED+FA AGVSKKIKI+EFN+LFN+SVD++YPA+EM NRSKLS
Sbjct: 717  SELNNTSNVICSLGFDRDEDYFATAGVSKKIKIYEFNSLFNESVDIHYPAIEMPNRSKLS 776

Query: 833  CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
             VCWNNYI+NYLAS+DYDG+VKLWD  TGQ +SH+IEHEKRAWSVDFS+  PTKLASGSD
Sbjct: 777  GVCWNNYIRNYLASSDYDGIVKLWDVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSD 836

Query: 893  DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
            DCSVKLWNINE+N L TI+NIANVCCVQFS  SSHLLAFGS+D+RTYCYDLRN R PWC+
Sbjct: 837  DCSVKLWNINERNCLGTIRNIANVCCVQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCI 896

Query: 953  LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012
            L+GH KAVSY KFLD+ TLVTASTDN LKLWDLK+T+H G STNACSLTF GHTNEKNFV
Sbjct: 897  LSGHNKAVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFV 956

Query: 1013 GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR 1072
            GLST+DGYIACGSE+NEVYAYHRSLPMPITSYKFGSIDPISGKE ++DN LFVSSVCWR+
Sbjct: 957  GLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCWRK 1016

Query: 1073 RSDMVVAANSSGCIKVLQMV 1092
            RS+MVV+A+S+G IKVLQ+V
Sbjct: 1017 RSNMVVSASSNGSIKVLQLV 1036

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110738246|dbj|BAF01052.1| COP1 like protein [Arabidopsis thaliana]

 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1100 (52%), Positives = 721/1100 (65%), Gaps = 76/1100 (6%)

Query: 4    MDEG-VGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIP-EGTSSDGSFQILA 61
            MDEG VG+V+ ++ A+ A LQ K  E S +PE+   V E  E+ +  E  S D S+ ++A
Sbjct: 66   MDEGSVGDVSRIDEADVAHLQFKNSEQSFKPENIE-VREVKEVQVQREAGSPDCSYGVIA 124

Query: 62   DMLEGKSVNRIVSPMDASENPCP--HSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERI 119
            D L+GK+    V  +     PC    + +D G +VEELTV+    S++AIVG  + R R+
Sbjct: 125  DFLDGKNGGDHVELI--GNEPCSSRQNTNDEGDVVEELTVKTCEGSSMAIVGRPSSRARL 182

Query: 120  STRHDRWQHLYQLGSGSGSGSSRGDRGHGRTMLGAWEDVGDTSLHDF----ITQKPLNDE 175
                 ++ H + L       SS   +   R  +    + G  SL +     +    +N E
Sbjct: 183  EMNRSQFLHRFPLDGDLPGSSSMSKKVIDRGTVSILRNAGKMSLPETSNGQLAIIAVNGE 242

Query: 176  HNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAF 235
             N   E   N E + +    LSH  I+TKMLS+SGFS+FFV+ TLKGKG+  RGPP N  
Sbjct: 243  AN---EHLTNVERNPVPVEALSHEGIKTKMLSQSGFSQFFVRKTLKGKGVTFRGPPNNRS 299

Query: 236  KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV 295
            K R     T A             ++G+ +V +N S K          +G   L + T  
Sbjct: 300  KARNMDQQTVA-------------SSGSALVIANTSAKISSSIPLAAYDGLPCLPSNTSK 346

Query: 296  PASCW-IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLD 354
            P+SC       +G    G++LREWL +   +  + EC+YIFRQIV  VD  H+QGV   D
Sbjct: 347  PSSCANPSDTHRGCGGEGLSLREWLKSERQEVNKAECMYIFRQIVDHVDCSHSQGVVLCD 406

Query: 355  LKPSSFKLLQSNQVKYIGPIIQKETLESA--SLDIPHSENYRLRRRSAEEEMFTTGIASA 412
            L+PSSFK+ + N VKY+    Q+E+ +S      +   EN  +RRR  +    +     A
Sbjct: 407  LRPSSFKIFKENAVKYVVSGSQRESFDSNMNKETLSQLENPLVRRRLGDTSSLSI---PA 463

Query: 413  KKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSK 472
            KKQK +     SR W +F    G  I+T N    N+ +I   H  +++ H        S 
Sbjct: 464  KKQKSSGPS--SRQWPMFQRAGGVNIQTEN----NDGAIQEFHFRSSQPHC-------ST 510

Query: 473  SSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSE 532
             + P          TSVSEQLEEKWYASPEEL G + + SSNIYSLG+L +EL  +F  E
Sbjct: 511  VACPF---------TSVSEQLEEKWYASPEELRGDMRSASSNIYSLGILLYELLSQFQCE 561

Query: 533  RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVC 592
            RA  AAMSD+R RILPP FLSENPKEAGFCLW LHPE   RP+TR+ILQSEV N   ++ 
Sbjct: 562  RAREAAMSDIRHRILPPKFLSENPKEAGFCLWLLHPESSCRPSTRDILQSEVVNGIPDLY 621

Query: 593  AEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPL 652
            AE L  SI+Q+D+ESELL HFL   +E++Q  A  L+ EI S+EADI+E+ +R     P 
Sbjct: 622  AEGLSLSIEQEDTESELLQHFLFLSQEKRQKHAGNLMEEIASVEADIEEIVKRRCAIGP- 680

Query: 653  VDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQL 712
              PSL+  S+ S                    S   EMRL+RN+NQLE AYF+ R    L
Sbjct: 681  --PSLEEASSSSPA------------------SSVPEMRLIRNINQLESAYFAARIDAHL 720

Query: 713  SDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRT 772
             ++    R D DLLR+ +N     ++ E  +  DR+GAFFDGLCKYARYSKFE +G+LRT
Sbjct: 721  PEARYRLRPDRDLLRNSDNTVAEVENSETWSSDDRVGAFFDGLCKYARYSKFETRGVLRT 780

Query: 773  GEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLS 832
             E NN++NVICS+ FDRDED+FA AGVSKKIKI+EFN+LFN+SVD++YPA+EM NRSKLS
Sbjct: 781  SELNNTSNVICSLGFDRDEDYFATAGVSKKIKIYEFNSLFNESVDIHYPAIEMPNRSKLS 840

Query: 833  CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
             VCWNNYI+NYLAS+DYDG+VKLWD  TGQ +SH+IEHEKRAWSVDFS+  PTKLASGSD
Sbjct: 841  GVCWNNYIRNYLASSDYDGIVKLWDVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSD 900

Query: 893  DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
            DCSVKLWNINE+N L TI+NIANVCCVQFS  SSHLLAFGS+D+RTYCYDLRN R PWC+
Sbjct: 901  DCSVKLWNINERNCLGTIRNIANVCCVQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCI 960

Query: 953  LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012
            L+GH KAVSY KFLD+ TLVTASTDN LKLWDLK+T+H G STNACSLTF GHTNEKNFV
Sbjct: 961  LSGHNKAVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFV 1020

Query: 1013 GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR 1072
            GLST+DGYIACGSE+NEVYAYHRSLPMPITSYKFGSIDPISGKE ++DN LFVSSVCWR+
Sbjct: 1021 GLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCWRK 1080

Query: 1073 RSDMVVAANSSGCIKVLQMV 1092
            RS+MVV+A+S+G IKVLQ+V
Sbjct: 1081 RSNMVVSASSNGSIKVLQLV 1100

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1092
TAIR|locus:2136133	1036	SPA2 "SPA1-related 2" [Arabido	0.435	0.459	0.665	7.1e-226
TAIR|locus:2039139	1029	SPA1 "SUPPRESSOR OF PHYA-105 1	0.557	0.591	0.603	1.2e-217
TAIR|locus:2037005	794	SPA4 "SPA1-related 4" [Arabido	0.453	0.623	0.450	7.5e-120
DICTYBASE|DDB_G0288453	970	DDB_G0288453 "E3 ubiquitin-pro	0.372	0.419	0.448	2e-100
TAIR|locus:2059359	675	COP1 "CONSTITUTIVE PHOTOMORPHO	0.360	0.583	0.444	3e-95
ZFIN|ZDB-GENE-070410-134	694	rfwd2 "ring finger and WD repe	0.463	0.729	0.391	2.7e-91
UNIPROTKB|F1MHX1	735	RFWD2 "Uncharacterized protein	0.458	0.681	0.380	1e-90
UNIPROTKB|H0Y339	566	RFWD2 "E3 ubiquitin-protein li	0.326	0.630	0.457	1.5e-89
MGI|MGI:1347046	733	Rfwd2 "ring finger and WD repe	0.458	0.683	0.382	1.6e-88
RGD|1304773	433	Rfwd2 "ring finger and WD repe	0.326	0.824	0.459	1.7e-88

TAIR|locus:2136133 SPA2 "SPA1-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1690 (600.0 bits), Expect = 7.1e-226, Sum P(2) = 7.1e-226
 Identities = 318/478 (66%), Positives = 378/478 (79%)

Query:   615 ISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVDPSLQNESAPSRENRYFNEQL 674
             +SL  E+++  S+L+     L  + K  +    L + +       E    R        L
Sbjct:   561 LSLSIEQEDTESELLQHFLFLSQE-KRQKHAGNLMEEIASVEADIEEIVKRRCAIGPPSL 619

Query:   675 SSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRDRENLFL 734
               + +  SP S   EMRL+RN+NQLE AYF+ R    L ++    R D DLLR+ +N   
Sbjct:   620 EEASSS-SPASSVPEMRLIRNINQLESAYFAARIDAHLPEARYRLRPDRDLLRNSDNTVA 678

Query:   735 AQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHF 794
               ++ E  +  DR+GAFFDGLCKYARYSKFE +G+LRT E NN++NVICS+ FDRDED+F
Sbjct:   679 EVENSETWSSDDRVGAFFDGLCKYARYSKFETRGVLRTSELNNTSNVICSLGFDRDEDYF 738

Query:   795 AAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK 854
             A AGVSKKIKI+EFN+LFN+SVD++YPA+EM NRSKLS VCWNNYI+NYLAS+DYDG+VK
Sbjct:   739 ATAGVSKKIKIYEFNSLFNESVDIHYPAIEMPNRSKLSGVCWNNYIRNYLASSDYDGIVK 798

Query:   855 LWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIA 914
             LWD  TGQ +SH+IEHEKRAWSVDFS+  PTKLASGSDDCSVKLWNINE+N L TI+NIA
Sbjct:   799 LWDVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVKLWNINERNCLGTIRNIA 858

Query:   915 NVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTA 974
             NVCCVQFS  SSHLLAFGS+D+RTYCYDLRN R PWC+L+GH KAVSY KFLD+ TLVTA
Sbjct:   859 NVCCVQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCILSGHNKAVSYAKFLDNETLVTA 918

Query:   975 STDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034
             STDN LKLWDLK+T+H G STNACSLTF GHTNEKNFVGLST+DGYIACGSE+NEVYAYH
Sbjct:   919 STDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLSTSDGYIACGSETNEVYAYH 978

Query:  1035 RSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092
             RSLPMPITSYKFGSIDPISGKE ++DN LFVSSVCWR+RS+MVV+A+S+G IKVLQ+V
Sbjct:   979 RSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCWRKRSNMVVSASSNGSIKVLQLV 1036

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2039139 SPA1 "SUPPRESSOR OF PHYA-105 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1892 (671.1 bits), Expect = 1.2e-217, Sum P(3) = 1.2e-217
 Identities = 379/628 (60%), Positives = 471/628 (75%)

Query:   469 NYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR 528
             +Y K+ S  VS+ +++QS  +S  LEE+WY  PEE++G      SNIY+LGVL FEL   
Sbjct:   417 DYIKNLS--VSSVSRKQS--MSTWLEEQWYTCPEEINGEDIGEKSNIYALGVLLFELLCH 472

Query:   529 FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF 588
              +S    AA M+DLR RILPP+FLS+ PKEAGFCLW LHPEP SRP+ R+IL+SE+    
Sbjct:   473 CESGEMHAAMMADLRHRILPPTFLSKYPKEAGFCLWLLHPEPSSRPSARDILKSEL---- 528

Query:   589 QEVCAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYL 648
               +C ++ + S    +  SELLLHFL SLE +K+ +ASKL+ +I++LE DIKE ERR+  
Sbjct:   529 --ICEDDSVKSTAAAEEISELLLHFLSSLEVQKKKKASKLLQDIQTLEDDIKEAERRYSS 586

Query:   649 KKPLVDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRS 708
                LV      E     ++   +E  ++S A   P   AN  RLM N+ QLE AYF MRS
Sbjct:   587 NVSLVRSHGAIEKRV--QSSPLDEHCTTSSALFVPT--ANTDRLMSNIRQLEDAYFFMRS 642

Query:   709 QIQLSDSDSTTRADNDLL-RDR--ENLFLAQQDQEIQNPT-DRLGAFFDGLCKYARYSKF 764
             QI LS S +T R+D  L  RDR  EN     QD   +  + D+L  FF+GLCK+ARYSKF
Sbjct:   643 QINLSSSAATARSDKTLKDRDRCSENQN-ENQDMSTKGKSSDQLEVFFEGLCKFARYSKF 701

Query:   765 EVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVE 824
             E  G +R+G+  NSA+V+CS+SFD DE+H AAAG+SKKIKIF+FNA  N+SV V+YP VE
Sbjct:   702 ETCGTIRSGDLLNSASVVCSLSFDPDEEHIAAAGISKKIKIFDFNAFMNESVGVHYPLVE 761

Query:   825 MSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP 884
             M N+SKLSCVCWN+YIKNYLAS DYDGVV++WDA TGQ  S Y EH+KRAWSVDFS   P
Sbjct:   762 MVNKSKLSCVCWNSYIKNYLASTDYDGVVQIWDAGTGQGFSQYTEHQKRAWSVDFSPSDP 821

Query:   885 TKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLR 944
             TK  SGSDDCSVKLW+INEK SL TI + ANVCCVQFS++S+HLLAFGSADY+ YCYDLR
Sbjct:   822 TKFVSGSDDCSVKLWSINEKRSLGTIWSPANVCCVQFSSYSNHLLAFGSADYKVYCYDLR 881

Query:   945 NARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG 1004
               + PWC LAGHEKAVSYVKF+DS T+V+ASTDN LKLW+L +T+ +G S  ACSLT+ G
Sbjct:   882 YVKTPWCTLAGHEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSPGACSLTYKG 941

Query:  1005 HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLF 1064
             HTN+KNFVGLS  DGYIACGSE+NEVY+Y++SLPMP+TSYKFGS+DPISG E  DDNG F
Sbjct:   942 HTNQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQF 1001

Query:  1065 VSSVCWRRRSDMVVAANSSGCIKVLQMV 1092
             VSSVCWR++S+M+VAANS+G +K+L++V
Sbjct:  1002 VSSVCWRKKSNMLVAANSTGNMKLLKLV 1029

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048575 "short-day photoperiodism, flowering" evidence=IMP

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA;IMP

GO:2000028 "regulation of photoperiodism, flowering" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0009658 "chloroplast organization" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

GO:0009585 "red, far-red light phototransduction" evidence=IGI

TAIR|locus:2037005 SPA4 "SPA1-related 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1080 (385.2 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
 Identities = 233/517 (45%), Positives = 330/517 (63%)

Query:   587 EFQEVCAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKE-VERR 645
             E QE+  E  L  I Q   E+   L   ISL     +Q  K    ++    D++  +  R
Sbjct:   289 EEQELLLE-FLFLIQQRKQEAADKLQDTISLLSSDIDQVVKRQLVLQQKGRDVRSFLASR 347

Query:   646 HYLKKPLVDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFS 705
               +++     + + E+    ++   +E+    +   S + +++  RLMRNL +LE  YF+
Sbjct:   348 KRIRQGAETTAAEEEN----DDNSIDEESKLDDTLESTLLESS--RLMRNLKKLESVYFA 401

Query:   706 MR-SQIQLSDSDST--TRADNDLL---RDRENLFLAQQDQEIQNPTDRLG---AFFDGLC 756
              R  QI+ + +      R  + L    R  E   ++Q  ++  N + + G    F +GLC
Sbjct:   402 TRYRQIKAATAAEKPLARYYSALSCNGRSSEKSSMSQPSKDPINDSRQGGWIDPFLEGLC 461

Query:   757 KYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSV 816
             KY  +SK  V+  L+ G+  NS+N++C+I FDRD + FA AGV+KKIKIFE  ++  D  
Sbjct:   462 KYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR 521

Query:   817 DVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWS 876
             D++YP VE+++RSKLS +CWN+YIK+ +AS++++GVV++WD    Q V+   EHEKR WS
Sbjct:   522 DIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEMKEHEKRVWS 581

Query:   877 VDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADY 936
             +D+S   PT LASGSDD SVKLW+IN+  S+ TIK  AN+CCVQF + +   LAFGSAD+
Sbjct:   582 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSETGRSLAFGSADH 641

Query:   937 RTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTN 996
             + Y YDLRN + P C + GH K VSYV+F+DS TLV++STDN LKLWDL   S +G   N
Sbjct:   642 KVYYYDLRNPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSM-SISG--IN 698

Query:   997 ACSL-TFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGK 1055
                L +F GHTN KNFVGLS +DGYIA GSE+NEV+ YH++ PMP+ SYKF +IDP+S  
Sbjct:   699 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSEL 758

Query:  1056 ETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092
             E DD +  F+SSVCWR +S  +VAANS+G IK+L+MV
Sbjct:   759 EVDDASQ-FISSVCWRGQSSTLVAANSTGNIKILEMV 794

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

DICTYBASE|DDB_G0288453 DDB_G0288453 "E3 ubiquitin-protein ligase RFWD2" [Dictyostelium discoideum (taxid:44689)]

 Score = 947 (338.4 bits), Expect = 2.0e-100, Sum P(2) = 2.0e-100
 Identities = 190/424 (44%), Positives = 281/424 (66%)

Query:   669 YFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRD 728
             YF+    S     + IS+ N      N N L+       S   + +S+S +  +N+   +
Sbjct:   564 YFSAYNESDYDSPTIISETNH----NNNNILKSPNSVNSSSSSIINSNSNSNNNNNTNSN 619

Query:   729 RENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFD 788
               NL     + E       L +F   L K+ +Y++F+V   L+ G+  N+++++ SI FD
Sbjct:   620 LNNL---NNNIESLKVGKGLLSFSRNLLKFTKYNEFKVLATLKYGDLFNTSSIVSSIEFD 676

Query:   789 RDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD 848
             RDE++FA AGV+KKIKIFEF+ +  D+V+V+ P  EM+ RSK+SC+ WN YIK+ +AS+D
Sbjct:   677 RDEEYFATAGVTKKIKIFEFSQI-RDNVEVHSPVKEMTCRSKISCLSWNTYIKSQIASSD 735

Query:   849 YDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLA 908
             Y+G++ LWDA TGQ +    EHEKR WSVDFS+  PT+LASGSDD  VKLW+   + ++ 
Sbjct:   736 YEGIISLWDANTGQNIMTLEEHEKRVWSVDFSRTDPTQLASGSDDTRVKLWSTTTERAIT 795

Query:   909 TIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDS 968
             TI++ AN+CCV+F+  SS+L+AFGSAD+  + YDLR  + P  +  GH KAVSYVKF++ 
Sbjct:   796 TIESKANICCVKFNPCSSNLIAFGSADHHIHYYDLRQYKDPLLIFKGHRKAVSYVKFMNK 855

Query:   969 GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESN 1028
               +++ASTD+ LKLW++ +        N C  TF+GH+NEKNFVGL+    YI CGSE+N
Sbjct:   856 DEIISASTDSTLKLWNVNQ--------NDCVRTFTGHSNEKNFVGLTVNGDYICCGSENN 907

Query:  1029 EVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088
              VY Y+++L  PI +++FG+ +  +G+ETDDD   FVSSVCW++ S++++AANS G IK+
Sbjct:   908 GVYTYYKTLSKPIVTHRFGA-NSGTGEETDDDGSQFVSSVCWKKDSNILLAANSQGNIKI 966

Query:  1089 LQMV 1092
             L +V
Sbjct:   967 LSLV 970

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2059359 COP1 "CONSTITUTIVE PHOTOMORPHOGENIC 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 905 (323.6 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
 Identities = 187/421 (44%), Positives = 263/421 (62%)

Query:   672 EQLSSSEAQL---SPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRD 728
             + LS S++Q    S +S A + R+    N L+  Y   R Q+     +S    D  ++R 
Sbjct:   275 DALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLA-DQPNSKQENDKSVVR- 332

Query:   729 RENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFD 788
             RE              ++ L  F   L  + RYS+  V   +R G+  +SAN++ SI FD
Sbjct:   333 REGY------------SNGLADFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFD 380

Query:   789 RDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD 848
             RD++ FA AGVS+ IK+F+F+++ N+  D+  P VEMS RSKLSC+ WN + KN++AS+D
Sbjct:   381 RDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIVEMSTRSKLSCLSWNKHEKNHIASSD 440

Query:   849 YDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLA 908
             Y+G+V +WD  T Q++  Y EHEKRAWSVDFS+  P+ L SGSDDC VK+W   ++ S+ 
Sbjct:   441 YEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTRQEASVI 500

Query:   909 TIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDS 968
              I   AN+CCV+++  SS+ +A GSAD+  + YDLRN   P  V +GH+KAVSYVKFL +
Sbjct:   501 NIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSN 560

Query:   969 GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESN 1028
               L +ASTD+ L+LWD+K         N    TF GHTNEKNFVGL+    Y+ACGSE+N
Sbjct:   561 NELASASTDSTLRLWDVK--------DNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETN 612

Query:  1029 EVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088
             EVY YH+ +  P+TS++FGS D    +E  +    F+S+VCW+  S  ++ ANS G IKV
Sbjct:   613 EVYVYHKEITRPVTSHRFGSPDMDDAEE--EAGSYFISAVCWKSDSPTMLTANSQGTIKV 670

Query:  1089 L 1089
             L
Sbjct:   671 L 671

GO:0005634 "nucleus" evidence=ISM;IDA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009640 "photomorphogenesis" evidence=IGI;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000152 "nuclear ubiquitin ligase complex" evidence=TAS

GO:0009647 "skotomorphogenesis" evidence=TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IGI;IMP

GO:0046283 "anthocyanin-containing compound metabolic process" evidence=IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA;IMP

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

GO:0009641 "shade avoidance" evidence=IMP

ZFIN|ZDB-GENE-070410-134 rfwd2 "ring finger and WD repeat domain 2" [Danio rerio (taxid:7955)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 213/544 (39%), Positives = 308/544 (56%)

Query:   567 HPEPLSRPTTREILQSEVTN-EFQEV--CAEELLSSIDQDDSESE-----LLLHFLISLE 618
             HP        +++L ++  N +   V    E LL    Q ++ES+     +L+ FL    
Sbjct:   171 HPNGTKWQVFQDVLGADQENMDLANVNYILEYLLQKKKQLEAESQAAQRQILMEFLKEAR 230

Query:   619 EEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVDPSLQNESA-PSRENRYFNEQLSSS 677
               K+ Q  +L  E+  LE DIK VE    +  P+ D    ++S  P  E        + S
Sbjct:   231 RNKREQLEQLQKELNFLEEDIKRVEEMSGMYSPISDMDCNSDSTVPQVE--------APS 282

Query:   678 EAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRDRENLFLAQQ 737
              A  S I D +E  +        +   S R     S   S  +       D E  + + +
Sbjct:   283 PAPSSSIIDPSEY-IQPPFGGNSQ---SKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNR 338

Query:   738 DQEIQNPT---DRLGAFFDGLCKYARYSKFEVQGMLR-TGEFNNSANVICSISFDRDEDH 793
                I + +   ++L  F + L K+ RY+       L    +  N ++++ SI FDRD D+
Sbjct:   339 MSRITDDSRTVNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDY 398

Query:   794 FAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV 853
             FA AGV+KKIK+FE+  +  D+VD++YP  EM+  SK+SC+ W++Y KN LAS+DY+G V
Sbjct:   399 FAIAGVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTV 458

Query:   854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI 913
              LWD  TGQ    Y EHEKR WSVDF+ + P  LASGSDD  VKLW+ N  NS+A+I+  
Sbjct:   459 ILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAK 518

Query:   914 ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVT 973
             ANVCCV+FS  S + LAFG AD+  + YDLRNA+ P  V  GH KAVSY KF++ G +V+
Sbjct:   519 ANVCCVKFSPTSRYHLAFGCADHCVHYYDLRNAKQPIMVFKGHRKAVSYAKFVNGGEIVS 578

Query:   974 ASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAY 1033
             ASTD++LKLW++ +  H       C  +F GH NEKNFVGL++   Y+ACGSE+N +Y Y
Sbjct:   579 ASTDSQLKLWNVNKP-H-------CLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLY 630

Query:  1034 HRSLPMPITSYKFGSIDPISGKET-DDDNGLFVSSVCWRR----RSDMVVAANSSGCIKV 1088
              + L   + ++KF ++  +  K+  +DD   FVS+VCWR      S++++AANS G IKV
Sbjct:   631 CKGLSKTLLTFKFDTVKSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKV 690

Query:  1089 LQMV 1092
             L++V
Sbjct:   691 LELV 694

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1MHX1 RFWD2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 882 (315.5 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
 Identities = 206/541 (38%), Positives = 307/541 (56%)

Query:   564 WQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLS-SIDQDDSESELLLHFLISLEEEKQ 622
             WQ+  + L   T ++ L     N   E+  ++      +   ++ ++L+ FL      K+
Sbjct:   223 WQIFQDLLG--TDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKR 280

Query:   623 NQASKLVGEIRSLEADIKEVERRHYLKKPLV-DPSLQNESAPSRENRYFNEQLSSSEAQL 681
              Q  ++  E+  LE DIK VE    L  P+  D ++    APS  +   +  + S+E   
Sbjct:   281 EQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPSH---SSIIDSTEYSQ 337

Query:   682 SP-ISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRDRENLFLAQQDQE 740
              P  S +++ +     N       S R ++        T    DL    E  + + +   
Sbjct:   338 PPGFSGSSQTKKQPWYNS---TLASRRKRL--------TAHFEDL----EQCYFSTRMSR 382

Query:   741 IQNPT---DRLGAFFDGLCKYARYSKFEVQGMLR-TGEFNNSANVICSISFDRDEDHFAA 796
             I + +    +L  F + L K+ RY+       L    +  N ++++ SI FDRD D+FA 
Sbjct:   383 ISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAI 442

Query:   797 AGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW 856
             AGV+KKIK++E+  +  D+VD++YP  EM+  SK+SC+ W++Y KN LAS+DY+G V LW
Sbjct:   443 AGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILW 502

Query:   857 DACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANV 916
             D  TGQ    Y EHEKR WSVDF+ + P  LASGSDD  VKLW+ N  NS+A+I+  ANV
Sbjct:   503 DGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANV 562

Query:   917 CCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAST 976
             CCV+FS  S + LAFG AD+  + YDLRN + P  V  GH KAVSY KF+    +V+AST
Sbjct:   563 CCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSAST 622

Query:   977 DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036
             D++LKLW++ +     P    C  +F GH NEKNFVGL++   YIACGSE+N +Y Y++ 
Sbjct:   623 DSQLKLWNVGK-----PY---CLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKG 674

Query:  1037 LPMPITSYKFGSIDPISGKET-DDDNGLFVSSVCWRR----RSDMVVAANSSGCIKVLQM 1091
             L   + ++KF ++  +  K+  +DD   FVS+VCWR      S++++AANS G IKVL++
Sbjct:   675 LSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLEL 734

Query:  1092 V 1092
             V
Sbjct:   735 V 735

GO:0005925 "focal adhesion" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|H0Y339 RFWD2 "E3 ubiquitin-protein ligase RFWD2" [Homo sapiens (taxid:9606)]

 Score = 851 (304.6 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
 Identities = 171/374 (45%), Positives = 243/374 (64%)

Query:   728 DRENLFLAQQDQEIQNPT---DRLGAFFDGLCKYARYSKFEVQGMLR-TGEFNNSANVIC 783
             D E  + + +   I + +    +L  F + L K+ RY+       L    +  N ++++ 
Sbjct:   201 DLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVS 260

Query:   784 SISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNY 843
             SI FDRD D+FA AGV+KKIK++E++ +  D+VD++YP  EM+  SK+SC+ W++Y KN 
Sbjct:   261 SIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNL 320

Query:   844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
             LAS+DY+G V LWD  TGQ    Y EHEKR WSVDF+ + P  LASGSDD  VKLW+ N 
Sbjct:   321 LASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNL 380

Query:   904 KNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYV 963
              NS+A+I+  ANVCCV+FS  S + LAFG AD+  + YDLRN + P  V  GH KAVSY 
Sbjct:   381 DNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYA 440

Query:   964 KFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIAC 1023
             KF+    +V+ASTD++LKLW++ +     P    C  +F GH NEKNFVGL++   YIAC
Sbjct:   441 KFVSGEEIVSASTDSQLKLWNVGK-----PY---CLRSFKGHINEKNFVGLASNGDYIAC 492

Query:  1024 GSESNEVYAYHRSLPMPITSYKFGSIDPISGKET-DDDNGLFVSSVCWRR----RSDMVV 1078
             GSE+N +Y Y++ L   + ++KF ++  +  K+  +DD   FVS+VCWR      S++++
Sbjct:   493 GSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLI 552

Query:  1079 AANSSGCIKVLQMV 1092
             AANS G IKVL++V
Sbjct:   553 AANSQGTIKVLELV 566

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

MGI|MGI:1347046 Rfwd2 "ring finger and WD repeat domain 2" [Mus musculus (taxid:10090)]

 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 207/541 (38%), Positives = 306/541 (56%)

Query:   564 WQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLS-SIDQDDSESELLLHFLISLEEEKQ 622
             WQ+  + L   T ++ L     N   E+  ++      +   ++ ++L+ FL      K+
Sbjct:   221 WQIFQDLLG--TDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKR 278

Query:   623 NQASKLVGEIRSLEADIKEVERRHYLKKPLV-DPSLQNESAPSRENRYFNEQLSSSEAQL 681
              Q  ++  E+  LE DIK VE    L  P+  D ++    APS  +   +  + S+E   
Sbjct:   279 EQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPSH---SSIIDSTEYSQ 335

Query:   682 SP-ISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRDRENLFLAQQDQE 740
              P  S  ++ +     N       S R ++        T    DL    E  + + +   
Sbjct:   336 PPGFSGTSQTKKQPWYNS---TLASRRKRL--------TAHFEDL----EQCYFSTRMSR 380

Query:   741 IQNPT---DRLGAFFDGLCKYARYSKFEVQGMLR-TGEFNNSANVICSISFDRDEDHFAA 796
             I + +    +L  F + L K+ RY+       L    +  N ++++ SI FDRD D+FA 
Sbjct:   381 ISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAI 440

Query:   797 AGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW 856
             AGV+KKIK++E+  +  D+VD++YP  EM+  SK+SC+ W++Y KN LAS+DY+G V LW
Sbjct:   441 AGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILW 500

Query:   857 DACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANV 916
             D  TGQ    Y EHEKR WSVDF+ + P  LASGSDD  VKLW+ N  NS+A+I+  ANV
Sbjct:   501 DGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANV 560

Query:   917 CCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAST 976
             CCV+FS  S + LAFG AD+  + YDLRN + P  V  GH KAVSY KF+    +V+AST
Sbjct:   561 CCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSAST 620

Query:   977 DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036
             D++LKLW++ +     P    C  +F GH NEKNFVGL++   YIACGSE+N +Y Y++ 
Sbjct:   621 DSQLKLWNVGK-----PY---CLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKG 672

Query:  1037 LPMPITSYKFGSIDPISGKET-DDDNGLFVSSVCWRRRSD----MVVAANSSGCIKVLQM 1091
             L   + ++KF ++  +  K+  +DD   FVS+VCWR  SD    +++AANS G IKVL++
Sbjct:   673 LSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDGESNVLIAANSQGTIKVLEL 732

Query:  1092 V 1092
             V
Sbjct:   733 V 733

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1304773 Rfwd2 "ring finger and WD repeat domain 2" [Rattus norvegicus (taxid:10116)]

 Score = 853 (305.3 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
 Identities = 172/374 (45%), Positives = 242/374 (64%)

Query:   728 DRENLFLAQQDQEIQNPT---DRLGAFFDGLCKYARYSKFEVQGMLR-TGEFNNSANVIC 783
             D E  + + +   I + +    +L  F + L K+ RY+       L    +  N ++++ 
Sbjct:    68 DLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVS 127

Query:   784 SISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNY 843
             SI FDRD D+FA AGV+KKIK++E+  +  D+VD++YP  EM+  SK+SC+ W++Y KN 
Sbjct:   128 SIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNL 187

Query:   844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
             LAS+DY+G V LWD  TGQ    Y EHEKR WSVDF+ + P  LASGSDD  VKLW+ N 
Sbjct:   188 LASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNL 247

Query:   904 KNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYV 963
              NS+A+I+  ANVCCV+FS  S + LAFG AD+  + YDLRN + P  V  GH KAVSY 
Sbjct:   248 DNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYA 307

Query:   964 KFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIAC 1023
             KF+    +V+ASTD++LKLW++ +     P    C  +F GH NEKNFVGL++   YIAC
Sbjct:   308 KFVSGEEIVSASTDSQLKLWNVGK-----PY---CLRSFKGHINEKNFVGLASNGDYIAC 359

Query:  1024 GSESNEVYAYHRSLPMPITSYKFGSIDPISGKET-DDDNGLFVSSVCWRRRSD----MVV 1078
             GSE+N +Y Y++ L   + ++KF ++  +  K+  +DD   FVS+VCWR  SD    +++
Sbjct:   360 GSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDGESNVLI 419

Query:  1079 AANSSGCIKVLQMV 1092
             AANS G IKVL++V
Sbjct:   420 AANSQGTIKVLELV 433

GO:0000139 "Golgi membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9T014	SPA2_ARATH	No assigned EC number	0.5227	0.9377	0.9884	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1092
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-177
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-16
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-06
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-06
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-05
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04
smart00320	40	smart00320, WD40, WD40 repeats	4e-04
smart00320	40	smart00320, WD40, WD40 repeats	7e-04
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	8e-04
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	0.001
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	0.002

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score =  538 bits (1388), Expect = e-177
 Identities = 288/623 (46%), Positives = 389/623 (62%), Gaps = 28/623 (4%)

Query: 493  LEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFL 552
            +E  WY SPEE +G     +S++Y LGVL FELF    S    +  MS LR R+LPP  L
Sbjct: 176  MEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSRTMSSLRHRVLPPQIL 235

Query: 553  SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDD--SESELL 610
               PKEA FCLW LHPEP  RP+  E+LQSE  NE +E   EE  ++++  D   E ELL
Sbjct: 236  LNWPKEASFCLWLLHPEPSCRPSMSELLQSEFINEPRE-NLEEREAAMELRDRIEEQELL 294

Query: 611  LHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKP--------LVDPSLQNESA 662
            L FL  +++ KQ  A KL   I  L +DI +V +R  + +         L       + A
Sbjct: 295  LEFLFLIQQRKQEAADKLQDTISLLSSDIDQVVKRQLVLQQKGSDVRSFLASRKRIRQGA 354

Query: 663  PSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMR-SQIQLSDSD----- 716
             +      N+  SS        +     RLMRNL +LE  YF+ R  QI+ + +      
Sbjct: 355  ETLAAEEENDDNSSKLDDTLESTLLESSRLMRNLKKLESVYFATRYRQIKAAAAAEKPLA 414

Query: 717  --STTRADNDLLRDRENLFLAQQDQEIQNPTDRLGA----FFDGLCKYARYSKFEVQGML 770
               +  ++N    ++ ++    +  +      R G     F +GLCKY  +SK  V+  L
Sbjct: 415  RYYSALSENGRSSEKSSMSNPAKPPDFYINDSRQGGWIDPFLEGLCKYLSFSKLRVKADL 474

Query: 771  RTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSK 830
            + G+  NS+N++C+I FDRD + FA AGV+KKIKIFE  ++  D  D++YP VE+++RSK
Sbjct: 475  KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSK 534

Query: 831  LSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASG 890
            LS +CWN+YIK+ +AS++++GVV++WD    Q V+   EHEKR WS+D+S   PT LASG
Sbjct: 535  LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASG 594

Query: 891  SDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPW 950
            SDD SVKLW+IN+  S+ TIK  AN+CCVQF + S   LAFGSAD++ Y YDLRN + P 
Sbjct: 595  SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654

Query: 951  CVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSL-TFSGHTNEK 1009
            C + GH K VSYV+F+DS TLV++STDN LKLWDL   S +    N   L +F GHTN K
Sbjct: 655  CTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDL---SMSISGINETPLHSFMGHTNVK 711

Query: 1010 NFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVC 1069
            NFVGLS +DGYIA GSE+NEV+ YH++ PMP+ SYKF +IDP+SG E DD +  F+SSVC
Sbjct: 712  NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ-FISSVC 770

Query: 1070 WRRRSDMVVAANSSGCIKVLQMV 1092
            WR +S  +VAANS+G IK+L+MV
Sbjct: 771  WRGQSSTLVAANSTGNIKILEMV 793

Length = 793

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  121 bits (306), Expect = 2e-30
 Identities = 72/261 (27%), Positives = 103/261 (39%), Gaps = 29/261 (11%)

Query: 772  TGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKL 831
                      +  ++F  D    A       IK++          D+    +  + +   
Sbjct: 2    RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW----------DLETGELLRTLKGHT 51

Query: 832  SCVCWNNYI--KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLAS 889
              V          YLAS   D  ++LWD  TG+ V     H     SV FS      L+S
Sbjct: 52   GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI-LSS 110

Query: 890  GSDDCSVKLWNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA 948
             S D ++K+W++     L T++   + V  V FS      +A  S D     +DLR  + 
Sbjct: 111  SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS-PDGTFVASSSQDGTIKLWDLRTGK- 168

Query: 949  PWCV--LAGHEKAVSYVKFLDSG-TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005
              CV  L GH   V+ V F   G  L+++S+D  +KLWDL        ST  C  T  GH
Sbjct: 169  --CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL--------STGKCLGTLRGH 218

Query: 1006 TNEKNFVGLSTADGYIACGSE 1026
             N  N V  S     +A GSE
Sbjct: 219  ENGVNSVAFSPDGYLLASGSE 239

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  109 bits (275), Expect = 3e-26
 Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 19/208 (9%)

Query: 782 ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSK-LSCVCWNNYI 840
           + S++F  D    +++   K IK+++        V+       +   +  ++ V ++   
Sbjct: 96  VSSVAFSPDGRILSSSSRDKTIKVWD--------VETGKCLTTLRGHTDWVNSVAFSPD- 146

Query: 841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPT--KLASGSDDCSVKL 898
             ++AS+  DG +KLWD  TG+ V+    H     SV F    P   KL S S D ++KL
Sbjct: 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF---SPDGEKLLSSSSDGTIKL 203

Query: 899 WNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHE 957
           W+++    L T++ +   V  V FS    +LLA GS D     +DLR        L+GH 
Sbjct: 204 WDLSTGKCLGTLRGHENGVNSVAFS-PDGYLLASGSEDGTIRVWDLRTGE-CVQTLSGHT 261

Query: 958 KAVSYVKFLDSG-TLVTASTDNKLKLWD 984
            +V+ + +   G  L + S D  +++WD
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  106 bits (264), Expect = 6e-24
 Identities = 74/309 (23%), Positives = 124/309 (40%), Gaps = 17/309 (5%)

Query: 770  LRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRS 829
            L +       + I SI+F  D +   +      IK+++ +            ++E  + S
Sbjct: 56   LSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-----KLIKSLEGLHDS 110

Query: 830  KLSCVCWNNYIKNYLASA--DYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHPTK 886
             +S +  ++   N +  A    DG VKLWD  T   +   +E H +   S+ FS      
Sbjct: 111  SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 887  LASGSDDCSVKLWNINEKNSLATIKN-IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRN 945
             +  S D ++KLW++     L+T+      V  + FS     L+A GS+D     +DL  
Sbjct: 171  ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 946  ARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005
             +     L+GH  +V      D   L + S+D  ++LWDL+       S+++   T SGH
Sbjct: 231  GKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLR-------SSSSLLRTLSGH 283

Query: 1006 TNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKF-GSIDPISGKETDDDNGLF 1064
            ++    V  S     +A GS    V  +       ++S    G   P+S      D  L 
Sbjct: 284  SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343

Query: 1065 VSSVCWRRR 1073
            VS       
Sbjct: 344  VSGGSDDGT 352

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 93.2 bits (230), Expect = 1e-19
 Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 12/277 (4%)

Query: 774  EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSC 833
            E  + ++V        D +    A  S    +     L++ S           +   ++ 
Sbjct: 105  EGLHDSSVSKLALSSPDGNSILLASSSLDGTVK----LWDLSTPGKLIRTLEGHSESVTS 160

Query: 834  VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDD 893
            + ++   K   + +  DG +KLWD  TG+ +S    H     S+ FS      +ASGS D
Sbjct: 161  LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220

Query: 894  CSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVL 953
             +++LW+++    L +  +  +   V   +    LLA GS+D     +DLR++ +    L
Sbjct: 221  GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL 280

Query: 954  AGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012
            +GH  +V  V F  D   L + S+D  ++LWDL+            SLT  GH    + +
Sbjct: 281  SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET------GKLLSSLTLKGHEGPVSSL 334

Query: 1013 GLSTADGYIACG-SESNEVYAYHRSLPMPITSYKFGS 1048
              S     +  G S+   +  +      P+ + +  S
Sbjct: 335  SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 62/267 (23%), Positives = 107/267 (40%), Gaps = 23/267 (8%)

Query: 775  FNNSANVICSISFDRDEDHFAA-AGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSC 833
                 + + S++F  D     A       I++++ +     +  +    +   + S +S 
Sbjct: 194  LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-----TGKLLRSTLSGHSDSVVSS 248

Query: 834  VCWNNYIKNYLASADYDGVVKLWDA-CTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
               +    + LAS   DG ++LWD   +   +     H     SV FS      LASGS 
Sbjct: 249  FSPDG---SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG-KLLASGSS 304

Query: 893  DCSVKLWNINEKNSLATIKNIAN---VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP 949
            D +V+LW++     L+++    +   V  + FS   S L++ GS D     +DLR  +  
Sbjct: 305  DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364

Query: 950  WCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009
              +  GH   +S     D   + + STD  ++LWDL        ST +      GHT+  
Sbjct: 365  KTLE-GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL--------STGSLLRNLDGHTSRV 415

Query: 1010 NFVGLSTADGYIACGSESNEVYAYHRS 1036
              +  S     +A GS  N +  +   
Sbjct: 416  TSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.1 bits (201), Expect = 4e-16
 Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 15/246 (6%)

Query: 748 LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFE 807
                DG  +    S  ++     +G  ++  +     SF  D    A+      I++++
Sbjct: 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-----SFSPDGSLLASGSSDGTIRLWD 269

Query: 808 FNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSH- 866
             +  +    +        + S +  V ++      LAS   DG V+LWD  TG+ +S  
Sbjct: 270 LRSSSSLLRTLS------GHSSSVLSVAFSPD-GKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 867 -YIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHS 925
               HE    S+ FS      ++ GSDD +++LW++     L T++  +NV  V FS   
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDG 382

Query: 926 SHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDL 985
              ++ GS D     +DL        +     +  S     D  +L + S+DN ++LWDL
Sbjct: 383 RV-VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441

Query: 986 KRTSHT 991
           K +  +
Sbjct: 442 KTSLKS 447

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 52.4 bits (125), Expect = 1e-06
 Identities = 30/105 (28%), Positives = 47/105 (44%)

Query: 313 VNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIG 372
           V+LR+WL+         EC ++FRQIV +V+  H+QG+   +++PS F +   N V +I 
Sbjct: 64  VSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIE 123

Query: 373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKF 417
                ++           E    RR     E     +   KKQ F
Sbjct: 124 SASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPF 168

Length = 793

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF-GR--FDSERALAAAMSDLRDRILPPSF-- 551
            Y +PE L G     + +I+SLGV+ +EL  G+  F  +  L      +     P     
Sbjct: 161 EYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPE 220

Query: 552 --LSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
             +S   K+       L  +P  R T  E LQ
Sbjct: 221 WDISPEAKD--LIRKLLVKDPEKRLTAEEALQ 250

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 9/96 (9%)

Query: 497 WYASPEELSGG-VCTTSSNIYSLGVLFFELF-GRFDSERALAAAMSDLRDRILPPSFLSE 554
           WY +PE L GG       +++SLGV+ +EL  G+             L  RIL P    +
Sbjct: 163 WYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFD 222

Query: 555 NPKE-------AGFCLWQLHPEPLSRPTTREILQSE 583
            PK               L+ +P  RPT  EILQ  
Sbjct: 223 EPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEILQHP 258

Length = 260

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFELF-GRFDSERALAAAMSDLRDRIL----PPSFL 552
           Y +PE   G   +  S+I+SLG L +E+       E   A +M DLR ++     PP   
Sbjct: 167 YMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFE---ARSMQDLRYKVQRGKYPPIPP 223

Query: 553 SENPKEAGFCLWQLHPEPLSRPTTREILQS 582
             +     F    L  +P  RP   +IL S
Sbjct: 224 IYSQDLQNFIRSMLQVKPKLRPNCDKILAS 253

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 861 GQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
           G+ +     H     SV FS      LASGSDD +V++W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 952 VLAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWD 984
            L GH   V+ V F   G  L + S D  +++WD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 860 TGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
           +G+ +     H     SV FS      LASGSDD ++KLW+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 952 VLAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWD 984
            L GH   V+ V F   G  L + S D  +KLWD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 41.8 bits (99), Expect = 8e-04
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 31/86 (36%)

Query: 498 YASPEELSGGV-CTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENP 556
           Y +PE L G    +  S+I+SLGV+ +E              + +L+D            
Sbjct: 159 YMAPEVLLGKGYYSEKSDIWSLGVILYE--------------LPELKD------------ 192

Query: 557 KEAGFCLWQLHPEPLSRPTTREILQS 582
                    L  +P  RP+ +EIL+ 
Sbjct: 193 ----LIRKMLQKDPEKRPSAKEILEH 214

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 16/125 (12%)

Query: 475 SPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL-FGRFDSER 533
           S ++ NT  Q +T V        Y SPE + G   + +++I+SLG+   E   G+F    
Sbjct: 147 SKVLENTLDQCNTFVGTVT----YMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLP 202

Query: 534 ALAAAMSDLRDRIL--PPSFLSENPKEAGF------CLWQLHPEPLSRPTTREILQSEVT 585
               +  +L   I   PP  L        F      C   L  +P  RP+  E+LQ    
Sbjct: 203 PGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISAC---LQKDPKKRPSAAELLQHPFI 259

Query: 586 NEFQE 590
            +   
Sbjct: 260 KKADN 264

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFEL-FGRF--DSERALAAAMSDLRDRIL--PPSFL 552
           Y +PE + G   +  S+I+SLG+   EL  GRF    E      + +L   I+  PP  L
Sbjct: 165 YMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRL 224

Query: 553 SENPKEAGFCLWQ---LHPEPLSRPTTREILQ 581
                   F  +    L  +P  RP+ +E+L+
Sbjct: 225 PSGKFSPDFQDFVNLCLIKDPRERPSYKELLE 256

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1092
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0605	550	consensus NDR and related serine/threonine kinases	99.98
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.98
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.98
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.97
KOG0610	459	consensus Putative serine/threonine protein kinase	99.97
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.97
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.97
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.97
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.97
KOG0589	426	consensus Serine/threonine protein kinase [General	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
PTZ00283	496	serine/threonine protein kinase; Provisional	99.97
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.97
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.97
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.97
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.97
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.97
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.97
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.97
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.97
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
PHA03212	391	serine/threonine kinase US3; Provisional	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
PTZ00267	478	NIMA-related protein kinase; Provisional	99.97
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.97
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.97
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.96
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.96
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.96
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.96
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.96
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.96
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.96
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.96
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.96
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.96
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.96
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.96
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.96
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.96
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.96
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.96
PTZ00036	440	glycogen synthase kinase; Provisional	99.96
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.96
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.96
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.96
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.96
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.96
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.96
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.96
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.96
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.96
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.96
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.96
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.96
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.96
PHA03209	357	serine/threonine kinase US3; Provisional	99.96
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
PHA03211	461	serine/threonine kinase US3; Provisional	99.96
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.96
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.96
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.96
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.96
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.96
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.96
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.96
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.96
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.96
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.96
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.96
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.95
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.95
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.95
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.95
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.95
PHA03207	392	serine/threonine kinase US3; Provisional	99.95
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.95
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.95
PTZ00284	467	protein kinase; Provisional	99.95
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.95
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.95
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.95
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.95
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.95
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.95
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
PHA02988	283	hypothetical protein; Provisional	99.95
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.95
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.95
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.95
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.95
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.95
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.95
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.95
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.95
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.95
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.95
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.95
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.95
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.95
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.95
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.95
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.95
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.95
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.95
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.95
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.95
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.95
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.95
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.95
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.95
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.95
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.95
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.95
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.95
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.95
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.95
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.95
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.95
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.95
KOG0584	632	consensus Serine/threonine protein kinase [General	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.95
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.95
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.95
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.95
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.95
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.95
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.95
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.95
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.95
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.95
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.95
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.95
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.95
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.94
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.94
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.94
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.94
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.94
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0586	596	consensus Serine/threonine protein kinase [General	99.94
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.94
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.94
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.94
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.94
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.94
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.94
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.94
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.94
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.94
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.94
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.94
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.94
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.94
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.94
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.94
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.94
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.94
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.94
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.94
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.94
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.94
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.94
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.94
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.94
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.94
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.94
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.94
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.94
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.94
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.94
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.94
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.94
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.94
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.94
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.94
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.94
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.94
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.94
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.94
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.94
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.94
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.94
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.94
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.94
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.94
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.94
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.94
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.94
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.94
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.94
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.94
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.94
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.94
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.94
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.94
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.94
PTZ00421	493	coronin; Provisional	99.94
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.94
PHA03210	501	serine/threonine kinase US3; Provisional	99.94
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.94
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.94
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.94
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.94
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.94
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.94
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.94
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.94
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.94
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.94
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.94
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.94
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.94
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.94
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.94
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.94
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.94
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.94
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.94
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.94
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.94
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.94
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.94
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.94
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.94
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.94
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.94
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.94
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.94
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.94
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.94
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.94
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.93
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.93
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.93
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.93
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.93
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.93
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.93
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.93
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.93
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.93
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.93
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.93
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.93
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.93
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.93
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.93
PLN00009	294	cyclin-dependent kinase A; Provisional	99.93
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.93
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.93
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.93
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.93
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.93
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.93
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.93
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.93
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.93
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.93
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.93
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.93
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.93
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.93
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.93
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.93
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.93
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.93
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.93
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.93
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.93
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.93
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.93
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.93
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.93
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.93
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.93
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.93
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.93
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.93
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.93
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.93
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.93
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.93
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.93
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.93
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.93
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.93
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.93
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.93
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.93
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.93
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.93
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.93
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.93
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.93
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.93
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.93
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.92
PTZ00420	568	coronin; Provisional	99.92
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.92
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.92
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
PHA02882	294	putative serine/threonine kinase; Provisional	99.92
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.91
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.91
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.91
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.91
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.91
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.91
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.91
KOG0641	350	consensus WD40 repeat protein [General function pr	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG0289	506	consensus mRNA splicing factor [General function p	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.2e-78  Score=771.74  Aligned_cols=715  Identities=43%  Similarity=0.697  Sum_probs=525.1

Q ss_pred             ccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccC
Q 001366          306 QGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASL  385 (1092)
Q Consensus       306 ~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~  385 (1092)
                      .|.++.+++|++||......++..+++.||+||++||+|||++||+||||||+||||+..|.+|++|||++...... ..
T Consensus        57 ~~~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~-~~  135 (793)
T PLN00181         57 RALECEDVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSD-ED  135 (793)
T ss_pred             hhhccCCccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCccccc-cc
Confidence            45556688999999876667888899999999999999999999999999999999999999999999998765421 11


Q ss_pred             CCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccC
Q 001366          386 DIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNA  465 (1092)
Q Consensus       386 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  465 (1092)
                      ...++.||+++++......                                                    ...+.    
T Consensus       136 ~~~ki~DfG~a~~~~~~~~----------------------------------------------------~~~~~----  159 (793)
T PLN00181        136 ATTKSREIGSSRREEILSE----------------------------------------------------RRIEK----  159 (793)
T ss_pred             Ccccccccccccccccccc----------------------------------------------------cchhh----
Confidence            2233444444433110000                                                    00000    


Q ss_pred             CCCCccCCCCCccccccccc-ccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHHHHHHHHHhccc
Q 001366          466 GFGNYSKSSSPLVSNTAQQQ-STSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRD  544 (1092)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~~~~~~~~~~~~  544 (1092)
                                  .......+ .......+||+||||||++.+..|+.++|||||||+||||++++++.......+..+..
T Consensus       160 ------------~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~~~~~~~  227 (793)
T PLN00181        160 ------------LEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSRTMSSLRH  227 (793)
T ss_pred             ------------hhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHHHHHHHHH
Confidence                        00000000 00112467999999999999999999999999999999999998776665556666666


Q ss_pred             cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhccch-HhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 001366          545 RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCA-EELLSSIDQDDSESELLLHFLISLEEEKQN  623 (1092)
Q Consensus       545 ~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~~~-~~~~~~~~~~e~e~ell~efL~~lke~k~e  623 (1092)
                      ..+|+......+.+..+|.+||+++|.+||++.|||+||||.+...... .+....+.+...+.+.+.+++...++++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (793)
T PLN00181        228 RVLPPQILLNWPKEASFCLWLLHPEPSCRPSMSELLQSEFINEPRENLEEREAAMELRDRIEEQELLLEFLFLIQQRKQE  307 (793)
T ss_pred             hhcChhhhhcCHHHHHHHHHhCCCChhhCcChHHHhhchhhhhhhHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            6667666566788899999999999999999999999999987644332 222222333334445556677777788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCC--------ccccccccccccccccccCCccchHHHHHHHHH
Q 001366          624 QASKLVGEIRSLEADIKEVERRHYLKKPLVDPSLQNESA--------PSRENRYFNEQLSSSEAQLSPISDANEMRLMRN  695 (1092)
Q Consensus       624 ~~~kL~~el~~le~Di~eve~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~  695 (1092)
                      +..++..+++.++.||+++++|+........+.......        ...++...++...+.-.......-..+.||+++
T Consensus       308 ~~~~~~~~~~~l~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~~~  387 (793)
T PLN00181        308 AADKLQDTISLLSSDIDQVVKRQLVLQQKGSDVRSFLASRKRIRQGAETLAAEEENDDNSSKLDDTLESTLLESSRLMRN  387 (793)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccchhhhccccchhhccccccccccccccccccchhhhHHHHH
Confidence            999999999999999999998764432211110000000        000000000000000001111122347999999


Q ss_pred             HHHHHHHHHhhcccccCCCCCcccc-----ccc----hhhhcc--chhhhhhcc-ccccCCCCcEEeEcCCeEEEEEccc
Q 001366          696 LNQLERAYFSMRSQIQLSDSDSTTR-----ADN----DLLRDR--ENLFLAQQD-QEIQNPTDRLGAFFDGLCKYARYSK  763 (1092)
Q Consensus       696 ~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~----~~l~~~--~~~~~~~~~-~~~~~~~~~l~~~~D~~~k~w~~~~  763 (1092)
                      |++|+++||.+|+...........+     +..    ......  .+....... .....+.+.+..|++|.+++|++..
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~  467 (793)
T PLN00181        388 LKKLESVYFATRYRQIKAAAAAEKPLARYYSALSENGRSSEKSSMSNPAKPPDFYINDSRQGGWIDPFLEGLCKYLSFSK  467 (793)
T ss_pred             HHHHHHHHhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhcccc
Confidence            9999999999987531111000000     000    000000  000000000 0000112234457799999999999


Q ss_pred             ceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCE
Q 001366          764 FEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNY  843 (1092)
Q Consensus       764 ~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~  843 (1092)
                      +.....++.+.+.+|.+.|++++|+|+|++||+||.|++|+||++..........+.+.....+...|.+++|++..+.+
T Consensus       468 ~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~  547 (793)
T PLN00181        468 LRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQ  547 (793)
T ss_pred             eEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCE
Confidence            98888888778889999999999999999999999999999999864222222233444555667889999999876889


Q ss_pred             EEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEcc
Q 001366          844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSA  923 (1092)
Q Consensus       844 LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp  923 (1092)
                      |++++.||+|+|||+.+++.+..+.+|...|++++|+|.++.+|+||+.|++|++||++++.++.++.....|+++.|++
T Consensus       548 las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~  627 (793)
T PLN00181        548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPS  627 (793)
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeC
Confidence            99999999999999999999999999999999999998678899999999999999999999999998888999999976


Q ss_pred             CCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc
Q 001366          924 HSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS 1003 (1092)
Q Consensus       924 ~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~ 1003 (1092)
                      ....+|++|+.||.|++||+++.+.++..+.+|...|.++.|.++.+|++++.|++|++||++....  .....++.++.
T Consensus       628 ~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~--~~~~~~l~~~~  705 (793)
T PLN00181        628 ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS--GINETPLHSFM  705 (793)
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcc--ccCCcceEEEc
Confidence            5446999999999999999998766677888999999999999888999999999999999974321  11235678899


Q ss_pred             CCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecC
Q 001366         1004 GHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSS 1083 (1092)
Q Consensus      1004 ~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~D 1083 (1092)
                      +|.+.+++++|+|++.+||+|+.|+.|++|+...+.++..+.+...+.+.+.. ...+...|++++|+|++.+|++|+.|
T Consensus       706 gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~V~~v~ws~~~~~lva~~~d  784 (793)
T PLN00181        706 GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLE-VDDASQFISSVCWRGQSSTLVAANST  784 (793)
T ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccc-cCCCCcEEEEEEEcCCCCeEEEecCC
Confidence            99999999999999999999999999999999888888777765554444432 24567789999999999999999999


Q ss_pred             CeEEEEEcC
Q 001366         1084 GCIKVLQMV 1092 (1092)
Q Consensus      1084 G~V~vW~lv 1092 (1092)
                      |.|+||+||
T Consensus       785 G~I~i~~~~  793 (793)
T PLN00181        785 GNIKILEMV  793 (793)
T ss_pred             CcEEEEecC
Confidence            999999997

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-42  Score=368.41  Aligned_cols=299  Identities=22%  Similarity=0.374  Sum_probs=263.1

Q ss_pred             cccceEEeeEE-eeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecC
Q 001366          761 YSKFEVQGMLR-TGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNY  839 (1092)
Q Consensus       761 ~~~~~~~~~l~-~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~  839 (1092)
                      ...|.+....+ +..+.+|..+|-|++|+|+|..||+|+.|.++++||+.+.       .......+|...|.||+|+||
T Consensus        96 qavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-------Tp~~t~KgH~~WVlcvawsPD  168 (480)
T KOG0271|consen   96 QAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-------TPLFTCKGHKNWVLCVAWSPD  168 (480)
T ss_pred             chhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-------CcceeecCCccEEEEEEECCC
Confidence            34455555444 3568899999999999999999999999999999999861       223456789999999999999


Q ss_pred             CCCEEEEEECCCcEEEEECCCCce-EEEeeccCccEEEEEEecCC----CCEEEEEeCCCcEEEEecCCCceeeeEe-cC
Q 001366          840 IKNYLASADYDGVVKLWDACTGQT-VSHYIEHEKRAWSVDFSQVH----PTKLASGSDDCSVKLWNINEKNSLATIK-NI  913 (1092)
Q Consensus       840 ~~~~LaSgs~DgtV~IWD~~tg~~-i~~l~~h~~~V~sv~fsp~~----~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~  913 (1092)
                       +..||||+.||+|++||..+|++ ...|.+|.+.|++++|.|.+    ..+|||+|.||+|+|||+..+.++..+. |.
T Consensus       169 -gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT  247 (480)
T KOG0271|consen  169 -GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT  247 (480)
T ss_pred             -cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc
Confidence             99999999999999999999875 56799999999999998753    4579999999999999999999999887 67


Q ss_pred             CceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC------------C-------------
Q 001366          914 ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD------------S-------------  968 (1092)
Q Consensus       914 ~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~------------~-------------  968 (1092)
                      ..|+|+.|-.+|  ++++|+.|++|++|+...+. ....+.+|...|..++.+.            +             
T Consensus       248 ~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A  324 (480)
T KOG0271|consen  248 ASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA  324 (480)
T ss_pred             cceEEEEEcCCc--eEEecCCCceEEEEEccchh-HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence            899999998776  89999999999999998865 4678899999999998751            1             


Q ss_pred             ------------CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCC
Q 001366          969 ------------GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       969 ------------~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                                  +.|+|||.|.++.+|+-..       ..+++....+|...|+.+.||||++|||++|.|+.|++|+-.
T Consensus       325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~-------~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~  397 (480)
T KOG0271|consen  325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFK-------SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR  397 (480)
T ss_pred             HHHHHHhhccCcceeEEecCCceEEEecccc-------cccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC
Confidence                        2499999999999999763       345778889999999999999999999999999999999999


Q ss_pred             CCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1037 LPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1037 ~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +|+.+.+++              +|-..|+.|+|+.|+++|++|+.|.+++||++
T Consensus       398 tGk~lasfR--------------GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  398 TGKFLASFR--------------GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             Ccchhhhhh--------------hccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence            999887764              67889999999999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-42  Score=366.12  Aligned_cols=330  Identities=18%  Similarity=0.252  Sum_probs=283.1

Q ss_pred             hhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKI  803 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I  803 (1092)
                      ..+.+|.+.+..+++..  ......+++-|.++++|+...-...     ....+|.+.|.|++|+|||+.||+|+.||+|
T Consensus       109 sS~~GH~e~Vl~~~fsp--~g~~l~tGsGD~TvR~WD~~TeTp~-----~t~KgH~~WVlcvawsPDgk~iASG~~dg~I  181 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSP--TGSRLVTGSGDTTVRLWDLDTETPL-----FTCKGHKNWVLCVAWSPDGKKIASGSKDGSI  181 (480)
T ss_pred             cccCCCCCcEEEEEecC--CCceEEecCCCceEEeeccCCCCcc-----eeecCCccEEEEEEECCCcchhhccccCCeE
Confidence            34678888877766521  2233457789999999997654333     2456999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCC----CCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEE
Q 001366          804 KIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI----KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDF  879 (1092)
Q Consensus       804 ~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~----~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~f  879 (1092)
                      ++||..+.      ........+|+..|++++|.|-+    ..+||++|.||+|+|||+..++++..+.+|+.+|+||.|
T Consensus       182 ~lwdpktg------~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw  255 (480)
T KOG0271|consen  182 RLWDPKTG------QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW  255 (480)
T ss_pred             EEecCCCC------CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence            99997652      23334566899999999998742    568999999999999999999999999999999999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEc-----------cCCC---------------------
Q 001366          880 SQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFS-----------AHSS---------------------  926 (1092)
Q Consensus       880 sp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fs-----------p~~~---------------------  926 (1092)
                      -.  ..+++|||.|++|++|+...|++..+++ |...|+.++.+           |.+.                     
T Consensus       256 GG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~  333 (480)
T KOG0271|consen  256 GG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK  333 (480)
T ss_pred             cC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence            74  5689999999999999999999999998 45678877766           3332                     


Q ss_pred             ---eEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEE
Q 001366          927 ---HLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTF 1002 (1092)
Q Consensus       927 ---~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l 1002 (1092)
                         ..+++|+.|.++.+|+-...++++..+.+|+..|..+.|+ ++.+++|+|-|+.|++||-+        +++.+.+|
T Consensus       334 ~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~--------tGk~lasf  405 (480)
T KOG0271|consen  334 DSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR--------TGKFLASF  405 (480)
T ss_pred             cCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC--------Ccchhhhh
Confidence               2499999999999999988888888999999999999999 66789999999999999999        56778899


Q ss_pred             cCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec
Q 001366         1003 SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS 1082 (1092)
Q Consensus      1003 ~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~ 1082 (1092)
                      .||-..|+.|+|+.|.++|++||.|.+++||++.+.+...              .+.+|...|.++.|+|||..+++|+.
T Consensus       406 RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~--------------DLpGh~DEVf~vDwspDG~rV~sggk  471 (480)
T KOG0271|consen  406 RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ--------------DLPGHADEVFAVDWSPDGQRVASGGK  471 (480)
T ss_pred             hhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc--------------cCCCCCceEEEEEecCCCceeecCCC
Confidence            9999999999999999999999999999999987665433              34688999999999999999999999


Q ss_pred             CCeEEEEE
Q 001366         1083 SGCIKVLQ 1090 (1092)
Q Consensus      1083 DG~V~vW~ 1090 (1092)
                      |..+++|.
T Consensus       472 dkv~~lw~  479 (480)
T KOG0271|consen  472 DKVLRLWR  479 (480)
T ss_pred             ceEEEeec
Confidence            99999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3e-41  Score=365.04  Aligned_cols=282  Identities=26%  Similarity=0.333  Sum_probs=257.1

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecC-CCCEEEEEECCCcEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNY-IKNYLASADYDGVVKL  855 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~LaSgs~DgtV~I  855 (1092)
                      +.+.+|..+.|++|++.|||||.+|.++||+...       ........+|.+.|.++.|+|. .+..+|||+.||+|++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~-------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl  245 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ-------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL  245 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCC-------cceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence            5677899999999999999999999999999875       2344567899999999999997 3679999999999999


Q ss_pred             EECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEEC
Q 001366          856 WDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSA  934 (1092)
Q Consensus       856 WD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~  934 (1092)
                      |++.+...+..+.+|..+|..|+|+| +|.+|+|+|.|.+.++||++++..+.... |...|.+++|+|+|+ ++++|+.
T Consensus       246 w~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGl  323 (459)
T KOG0272|consen  246 WKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGGL  323 (459)
T ss_pred             eccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc-eeeccCc
Confidence            99999899999999999999999999 99999999999999999999998776555 678899999999997 9999999


Q ss_pred             CCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEE
Q 001366          935 DYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVG 1013 (1092)
Q Consensus       935 Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~ 1013 (1092)
                      |..-+|||+|+++. +..+.+|.+.|.+|+|+ +|..|+|||.|++++|||++.        ..+++++.+|.+-|..|.
T Consensus       324 D~~~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~--------r~~ly~ipAH~nlVS~Vk  394 (459)
T KOG0272|consen  324 DSLGRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM--------RSELYTIPAHSNLVSQVK  394 (459)
T ss_pred             cchhheeecccCcE-EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc--------cccceecccccchhhheE
Confidence            99999999999975 67889999999999999 455699999999999999994        456889999999999999


Q ss_pred             Eec-CCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1014 LST-ADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1014 ~sp-dg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      |+| .|.+|+++|.|++++||...+..++.+.              .+|.+.|-++.+++|+..++|++.|.++++|.
T Consensus       395 ~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL--------------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  395 YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL--------------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ecccCCeEEEEcccCcceeeecCCCcccchhh--------------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999 5789999999999999998888777643              58899999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.2e-38  Score=342.90  Aligned_cols=267  Identities=21%  Similarity=0.311  Sum_probs=241.5

Q ss_pred             CCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCCCCcccccc
Q 001366          744 PTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRD--EDHFAAAGVSKKIKIFEFNALFNDSVDVYYP  821 (1092)
Q Consensus       744 ~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspd--g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~  821 (1092)
                      .+-.++++++|.+|+|...+.....     .|.+|...|.++.|+|.  +..+|||+.||++++|+++..       ...
T Consensus       187 s~~laT~swsG~~kvW~~~~~~~~~-----~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-------~~l  254 (459)
T KOG0272|consen  187 SKHLATGSWSGLVKVWSVPQCNLLQ-----TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-------TPL  254 (459)
T ss_pred             CCeEEEeecCCceeEeecCCcceeE-----EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-------cch
Confidence            3445688999999999977653332     46799999999999997  569999999999999998751       222


Q ss_pred             eeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEec
Q 001366          822 AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI  901 (1092)
Q Consensus       822 ~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl  901 (1092)
                      ....+|...|..|+|+|+ |.+|+|+|+|.+-++||+.+++.+....||...|.+++|++ +|.+++||+.|..-+|||+
T Consensus       255 ~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDl  332 (459)
T KOG0272|consen  255 QDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDL  332 (459)
T ss_pred             hhhhcchhhheeeeecCC-CceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeec
Confidence            344578999999999998 99999999999999999999999989999999999999999 9999999999999999999


Q ss_pred             CCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc--CCCEEEEEECCC
Q 001366          902 NEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL--DSGTLVTASTDN  978 (1092)
Q Consensus       902 ~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs--~~~~L~Sgs~Dg  978 (1092)
                      ++++++..+. |...|.+|+|+|+| +.+|||+.|++++|||+|..+. +.++.+|.+-|+.|+|.  .+.+|+|+|.|+
T Consensus       333 Rtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~  410 (459)
T KOG0272|consen  333 RTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDN  410 (459)
T ss_pred             ccCcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCc
Confidence            9999999998 67789999999999 7999999999999999998764 78999999999999999  466899999999


Q ss_pred             eEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          979 KLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       979 ~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      +++||...        ...+++++.||++.|.+++.++|+.+|+|+|.|+++++|.
T Consensus       411 t~kiWs~~--------~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  411 TVKIWSTR--------TWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ceeeecCC--------CcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999988        5678899999999999999999999999999999999994

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.4e-39  Score=351.47  Aligned_cols=262  Identities=18%  Similarity=0.163  Sum_probs=199.0

Q ss_pred             ccCCchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch------hhHhhhhhhhhhccCCCCCCCccc
Q 001366          207 SKSGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS------DAALKAAGAMMVASNASPKPVGVG  278 (1092)
Q Consensus       207 ~~~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  278 (1092)
                      -++-+..|.+-++|+  +.|+|-+|...    -.+..+|.||+...-...      ....--++...|....||+|+...
T Consensus       167 pks~~d~yii~~~LGsGafg~Vkla~e~----~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~  242 (475)
T KOG0615|consen  167 PKSFNDYYIISKTLGSGAFGLVKLAYEK----KTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIK  242 (475)
T ss_pred             cchhcceeEeeeeecCCceeEEEEEEEc----ccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEe
Confidence            344455666666665  57899888873    346667776653222111      111123566678899999999876


Q ss_pred             cceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCC
Q 001366          279 TAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPS  358 (1092)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~  358 (1092)
                      +-..-....++                +|||++||+|.+++-..+. +.+..++.+|+|||.||.|||++||+||||||+
T Consensus       243 d~f~~~ds~Ym----------------VlE~v~GGeLfd~vv~nk~-l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPe  305 (475)
T KOG0615|consen  243 DFFEVPDSSYM----------------VLEYVEGGELFDKVVANKY-LREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPE  305 (475)
T ss_pred             eeeecCCceEE----------------EEEEecCccHHHHHHhccc-cccchhHHHHHHHHHHHHHHHHcCcccccCCcc
Confidence            65544333342                8999999999999977765 555589999999999999999999999999999


Q ss_pred             CeEEccC---CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccC
Q 001366          359 SFKLLQS---NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYG  435 (1092)
Q Consensus       359 Nill~~~---~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (1092)
                      ||||..+   ..+||+|||+|+..++                                                      
T Consensus       306 NILl~~~~e~~llKItDFGlAK~~g~------------------------------------------------------  331 (475)
T KOG0615|consen  306 NILLSNDAEDCLLKITDFGLAKVSGE------------------------------------------------------  331 (475)
T ss_pred             eEEeccCCcceEEEecccchhhcccc------------------------------------------------------
Confidence            9999866   7899999999988651                                                      


Q ss_pred             CcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC---CCcc
Q 001366          436 NKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV---CTTS  512 (1092)
Q Consensus       436 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~---~t~~  512 (1092)
                                                                        ...+.+.||||.|.|||++....   +..+
T Consensus       332 --------------------------------------------------~sfm~TlCGTpsYvAPEVl~~kg~~~~~~k  361 (475)
T KOG0615|consen  332 --------------------------------------------------GSFMKTLCGTPSYVAPEVLASKGVEYYPSK  361 (475)
T ss_pred             --------------------------------------------------ceehhhhcCCccccChhheecCCeecccch
Confidence                                                              11234789999999999998744   3458


Q ss_pred             ccchhhhHHHHHHcCCCCcHHHHHHHH----Hhc--cccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          513 SNIYSLGVLFFELFGRFDSERALAAAM----SDL--RDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       513 sDIwSLGvll~ell~~f~~~~~~~~~~----~~~--~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      +|||||||+||-+|+|++++.+....+    ..+  +....|+.+...+.+..+||.|||..||++|||+.|+|+||||+
T Consensus       362 VDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW~~  441 (475)
T KOG0615|consen  362 VDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALNHPWFK  441 (475)
T ss_pred             heeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChhhh
Confidence            999999999999999876665433322    222  33345778888899999999999999999999999999999999


Q ss_pred             hhhccch
Q 001366          587 EFQEVCA  593 (1092)
Q Consensus       587 ~~~~~~~  593 (1092)
                      ..+....
T Consensus       442 ~~~~~s~  448 (475)
T KOG0615|consen  442 DAPCLSK  448 (475)
T ss_pred             cccccch
Confidence            8764443

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-38  Score=341.06  Aligned_cols=251  Identities=21%  Similarity=0.224  Sum_probs=200.8

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCC-CCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS-LDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  289 (1092)
                      +....+.++  -.|+|||..-.    -.+...|.|+........-.+.-.++...+++.++|+|+..+.+..++.. .. 
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk----~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~is-  154 (364)
T KOG0581|consen   80 DLERLGVLGSGNGGTVYKVRHK----PTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEIS-  154 (364)
T ss_pred             HhhhhhhcccCCCcEEEEEEEc----CCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEE-
Confidence            333344443  46999998763    23444445555444444556667888888999999999998888776664 33 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCCcE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                     +.|||++||+|.++++..++ +++...-.|++|+++||.|||. ++||||||||+|||+...|.|
T Consensus       155 ---------------I~mEYMDgGSLd~~~k~~g~-i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeV  218 (364)
T KOG0581|consen  155 ---------------ICMEYMDGGSLDDILKRVGR-IPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEV  218 (364)
T ss_pred             ---------------eehhhcCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCE
Confidence                           27999999999999988765 5555888999999999999995 999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||.++.+..+                                                                  
T Consensus       219 KicDFGVS~~lvnS------------------------------------------------------------------  232 (364)
T KOG0581|consen  219 KICDFGVSGILVNS------------------------------------------------------------------  232 (364)
T ss_pred             EeccccccHHhhhh------------------------------------------------------------------
Confidence            99999999886621                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                             -..+.+||..|||||.+.+..|+.++||||||+.|+|++.|
T Consensus       233 ---------------------------------------~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~G  273 (364)
T KOG0581|consen  233 ---------------------------------------IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIG  273 (364)
T ss_pred             ---------------------------------------hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhC
Confidence                                                   01278999999999999999999999999999999999986


Q ss_pred             ---CCc----HHHHHHHHHhccccCCCCCCCC-CChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          529 ---FDS----ERALAAAMSDLRDRILPPSFLS-ENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       529 ---f~~----~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                         |.+    ..+....+..+...+.|..... .++++++|+..||++||..||++.|+|+|||+....
T Consensus       274 rfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~~~  342 (364)
T KOG0581|consen  274 RFPYPPPNPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQHPFIKKFE  342 (364)
T ss_pred             CCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcCHHHhhcc
Confidence               333    2356666777666555544443 789999999999999999999999999999998753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.4e-35  Score=306.23  Aligned_cols=289  Identities=20%  Similarity=0.258  Sum_probs=247.6

Q ss_pred             hhhhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSK  801 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~  801 (1092)
                      .+|++|.+-+.+.    .|.++.  .++++.||.+.+|+-..     ..+.+.+.-....|-.++|+|.|+++|+||.|+
T Consensus        49 r~LkGH~~Ki~~~----~ws~Dsr~ivSaSqDGklIvWDs~T-----tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN  119 (343)
T KOG0286|consen   49 RTLKGHLNKIYAM----DWSTDSRRIVSASQDGKLIVWDSFT-----TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN  119 (343)
T ss_pred             EEecccccceeee----EecCCcCeEEeeccCCeEEEEEccc-----ccceeEEecCceeEEEEEECCCCCeEEecCcCc
Confidence            5688998877664    345554  46899999999999533     223344556788999999999999999999999


Q ss_pred             cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEec
Q 001366          802 KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ  881 (1092)
Q Consensus       802 ~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp  881 (1092)
                      ...||++..... +..........+|.+.++|+.|-++  ..|+|+|.|.++.+||+++|+.+..|.+|.+.|.+++++|
T Consensus       120 ~Csiy~ls~~d~-~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  120 KCSIYPLSTRDA-EGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP  196 (343)
T ss_pred             eeEEEecccccc-cccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence            999999985321 1222233446789999999999884  6889999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEec--CCCC
Q 001366          882 VHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA--GHEK  958 (1092)
Q Consensus       882 ~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~--~H~~  958 (1092)
                      .+++.++||+-|++.++||++.+.++++|. |.+.|++|.|.|+|. -|++|+.|++.++||+|.... +..+.  .-..
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~  274 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQE-LAVYSHDSIIC  274 (343)
T ss_pred             CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcE-EeeeccCcccC
Confidence            889999999999999999999999999998 678999999999994 899999999999999998754 34443  2346


Q ss_pred             CeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          959 AVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       959 ~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      .|++|+|+ .+.+|++|..|.++.+||.-        .+..+..+.+|.+.|.++..+|||..+++||.|.+++||.
T Consensus       275 gitSv~FS~SGRlLfagy~d~~c~vWDtl--------k~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  275 GITSVAFSKSGRLLFAGYDDFTCNVWDTL--------KGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CceeEEEcccccEEEeeecCCceeEeecc--------ccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            89999999 88889999999999999987        3566788999999999999999999999999999999994

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=5.8e-38  Score=329.09  Aligned_cols=248  Identities=16%  Similarity=0.186  Sum_probs=199.6

Q ss_pred             hhhccccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          217 KTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       217 ~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      |..-+..|||||-+.    +.+++.+|+|.|+... ...-...+.|+.+++...+|||++.+++..--+.-..       
T Consensus         9 kvGEGSYGvV~KCrn----k~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklh-------   77 (396)
T KOG0593|consen    9 KVGEGSYGVVMKCRN----KDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLH-------   77 (396)
T ss_pred             ccccCcceEEEEecc----CCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeE-------
Confidence            344556899999887    5578889998876433 3444566889999999999999999888866544443       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               ++.|||+..=|.++=+.. .-++..-+..|+.|++.|+.|||++++|||||||+||||+.+|.+|++|||.
T Consensus        78 ---------LVFE~~dhTvL~eLe~~p-~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGF  147 (396)
T KOG0593|consen   78 ---------LVFEYCDHTVLHELERYP-NGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGF  147 (396)
T ss_pred             ---------EEeeecchHHHHHHHhcc-CCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchh
Confidence                     278999987777654444 3456658999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ||.+.+++                                                                        
T Consensus       148 AR~L~~pg------------------------------------------------------------------------  155 (396)
T KOG0593|consen  148 ARTLSAPG------------------------------------------------------------------------  155 (396)
T ss_pred             hHhhcCCc------------------------------------------------------------------------
Confidence            99876321                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCc
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                     ..+|.++-|+||+|||++.| ..|+.++||||+||++.||++|   |++
T Consensus       156 -------------------------------d~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG  204 (396)
T KOG0593|consen  156 -------------------------------DNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPG  204 (396)
T ss_pred             -------------------------------chhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCC
Confidence                                           12347789999999999999 7899999999999999999997   888


Q ss_pred             HHHHHHHHHhccc-cC-------------------CC---------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          532 ERALAAAMSDLRD-RI-------------------LP---------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       532 ~~~~~~~~~~~~~-~~-------------------~p---------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ..+..+.+.+.+. +.                   +|         ..++..+.-..+|+..||+.||.+|++.+++|+|
T Consensus       205 ~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H  284 (396)
T KOG0593|consen  205 RSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHH  284 (396)
T ss_pred             cchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhcC
Confidence            8888777655432 11                   11         1245556667899999999999999999999999


Q ss_pred             hhhhhh
Q 001366          583 EVTNEF  588 (1092)
Q Consensus       583 ~~~~~~  588 (1092)
                      +||...
T Consensus       285 ~yFd~~  290 (396)
T KOG0593|consen  285 PYFDGF  290 (396)
T ss_pred             hHHHHH
Confidence            999554

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.4e-37  Score=321.92  Aligned_cols=251  Identities=15%  Similarity=0.162  Sum_probs=209.3

Q ss_pred             ccceeeeCCCCCccccccccccc-cccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDT-KAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      -.|+||+|..    ..+++++|. ||+.+.-.+.-...+.|+.+++...+|+||+.+++...+..+..+           
T Consensus        14 ~~gvVyka~d----~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~l-----------   78 (318)
T KOG0659|consen   14 TYGVVYKARD----TETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSL-----------   78 (318)
T ss_pred             ceEEEEEEEe----cCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEE-----------
Confidence            3799999997    445777777 888887777777889999999999999999999999776665552           


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                           +.||+ -.+|...|+.....+...++..++.|++.||+|||++.|+||||||.|+||+++|.+|++|||+++.+.
T Consensus        79 -----VfEfm-~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~  152 (318)
T KOG0659|consen   79 -----VFEFM-PTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFG  152 (318)
T ss_pred             -----EEEec-cccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccC
Confidence                 45555 469999999999999999999999999999999999999999999999999999999999999999866


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      .+.                                                                             
T Consensus       153 ~p~-----------------------------------------------------------------------------  155 (318)
T KOG0659|consen  153 SPN-----------------------------------------------------------------------------  155 (318)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            211                                                                             


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERALA  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~~  536 (1092)
                                                ...+..+-|+||+|||++.| ..|+..+||||.|||+.||+-+   |++..+..
T Consensus       156 --------------------------~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDid  209 (318)
T KOG0659|consen  156 --------------------------RIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDID  209 (318)
T ss_pred             --------------------------cccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHH
Confidence                                      11123478999999999999 6799999999999999999975   78888887


Q ss_pred             HHHHhcccc---------------------CCC-----CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          537 AAMSDLRDR---------------------ILP-----PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       537 ~~~~~~~~~---------------------~~p-----~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      +.-...+.-                     ..|     ..|+..+..+.+|+..||.+||.+|+|+.|+|+|+||...+.
T Consensus       210 QL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~P~  289 (318)
T KOG0659|consen  210 QLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKHPYFKSLPL  289 (318)
T ss_pred             HHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcchhhhcCCC
Confidence            775554421                     111     125667788899999999999999999999999999998777


Q ss_pred             cchHhh
Q 001366          591 VCAEEL  596 (1092)
Q Consensus       591 ~~~~~~  596 (1092)
                      +.....
T Consensus       290 pt~~~~  295 (318)
T KOG0659|consen  290 PTPPSK  295 (318)
T ss_pred             CCChhh
Confidence            665433

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-35  Score=300.65  Aligned_cols=299  Identities=21%  Similarity=0.341  Sum_probs=248.8

Q ss_pred             eeeecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC
Q 001366          772 TGEFNNSANVICSISFDRD-EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD  850 (1092)
Q Consensus       772 ~~~l~~h~~~V~sl~fspd-g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D  850 (1092)
                      .+.+.+|.+.|+.++..+. .+.+++++.|+++.+|++....  ..-........+|...|..+..+++ +++.+|+|+|
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd--~~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD   84 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD--IKYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWD   84 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc--cccCceeeeeeccceEecceEEccC-CceEEecccc
Confidence            4567899999999999886 5689999999999999998631  1112223445689999999999998 9999999999


Q ss_pred             CcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-c--CCceEEEEEccCC-C
Q 001366          851 GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-N--IANVCCVQFSAHS-S  926 (1092)
Q Consensus       851 gtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~--~~~V~sl~fsp~~-~  926 (1092)
                      +++++||+.+|+..+.|.+|+..|.+++|++ +..+++|||.|.+|++|++-. .+..++. .  ..-|.|+.|+|+. .
T Consensus        85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~  162 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESN  162 (315)
T ss_pred             ceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCC
Confidence            9999999999999999999999999999999 889999999999999999984 4555554 2  5679999999984 3


Q ss_pred             eEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCC
Q 001366          927 HLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005 (1092)
Q Consensus       927 ~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h 1005 (1092)
                      .+|++++.|++|++||+++.+ ....+.+|++.++.+.++ ++..+++|+.||.+.+||++        .+++++++ +|
T Consensus       163 p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~--------~~k~lysl-~a  232 (315)
T KOG0279|consen  163 PIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN--------EGKNLYSL-EA  232 (315)
T ss_pred             cEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc--------CCceeEec-cC
Confidence            589999999999999999875 456788999999999999 66788999999999999999        45566666 47


Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCe
Q 001366         1006 TNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGC 1085 (1092)
Q Consensus      1006 ~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~ 1085 (1092)
                      ...|++++|+|+.-+|+.+ .+..|+|||..++..+...+.....+     ..........+++|++||..|.+|-.|+.
T Consensus       233 ~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-----s~~~~~~~clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  233 FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-----SSKAGDPICLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-----ccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence            7889999999987555544 45569999999998887776421111     11222345788999999999999999999


Q ss_pred             EEEEEc
Q 001366         1086 IKVLQM 1091 (1092)
Q Consensus      1086 V~vW~l 1091 (1092)
                      |++|++
T Consensus       307 irv~qv  312 (315)
T KOG0279|consen  307 IRVWQV  312 (315)
T ss_pred             EEEEEe
Confidence            999986

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.1e-35  Score=304.56  Aligned_cols=290  Identities=23%  Similarity=0.309  Sum_probs=255.4

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|.+.|..+.|+|+|.+|||||.|..|.+|++....      ..-....+|.+.|..+.|.++ ++.|+|+|.|++|
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------eN~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v  114 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------ENFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTV  114 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc------cceeeeccccceeEeeeeccC-CCEEEEecCCceE
Confidence            366999999999999999999999999999999976522      222344589999999999998 9999999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      +.||+++|++++.+++|.+-|+++.-+.....++.||+.|+++++||+++..+++++.....++++.|.-.+. -+.+|+
T Consensus       115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~-qv~sgg  193 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD-QVISGG  193 (338)
T ss_pred             EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccc-ceeecc
Confidence            9999999999999999999999999666567889999999999999999999999999999999999998886 788999


Q ss_pred             CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCC--C--
Q 001366          934 ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTN--E-- 1008 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~--~-- 1008 (1092)
                      -|+.|++||+|... ...++.||..+|+.+..+ .+.++.+-+.|+++++||++..-+    ...|+..+.+|..  .  
T Consensus       194 Idn~ikvWd~r~~d-~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p----~~R~v~if~g~~hnfekn  268 (338)
T KOG0265|consen  194 IDNDIKVWDLRKND-GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP----SQRCVKIFQGHIHNFEKN  268 (338)
T ss_pred             ccCceeeeccccCc-ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC----CCceEEEeecchhhhhhh
Confidence            99999999999875 468999999999999998 788999999999999999995432    4567888877543  2  


Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEE
Q 001366         1009 KNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088 (1092)
Q Consensus      1009 V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~v 1088 (1092)
                      ...++|+|++.++.+|+.|..+++||......+..              ..+|.+.|+.+.|+|...+|.++++|.+|.+
T Consensus       269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk--------------lpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK--------------LPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             cceeeccCCCCccccccccceEEEeecccccEEEE--------------cCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            34578999999999999999999999877665553              3688999999999999999999999999986


Q ss_pred             EE
Q 001366         1089 LQ 1090 (1092)
Q Consensus      1089 W~ 1090 (1092)
                      =+
T Consensus       335 ge  336 (338)
T KOG0265|consen  335 GE  336 (338)
T ss_pred             ec
Confidence            43

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=8.7e-37  Score=324.31  Aligned_cols=269  Identities=17%  Similarity=0.160  Sum_probs=213.1

Q ss_pred             CCchhHHHhhhcc--ccceeeeCCCCCccccccccccc-cccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCC
Q 001366          209 SGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDT-KAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       209 ~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (1092)
                      ....+|...+...  -.|+||||..    +-+.+.+|. +++.......-.-...|++.++.+.+||||+.+.+..+...
T Consensus        73 rsv~efe~lnrI~EGtyGiVYRakd----k~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~  148 (419)
T KOG0663|consen   73 RSVEEFEKLNRIEEGTYGVVYRAKD----KKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSN  148 (419)
T ss_pred             ccHHHHHHHhhcccCcceeEEEecc----CCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccc
Confidence            3667888766654  4799999998    444455555 55555555555667889999999999999999988877433


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                      .-.         +|     .+|+||+. +|+.+|..-...+...++..++.|+|+||.|||.++|+||||||+|+|+...
T Consensus       149 ~d~---------iy-----~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~  213 (419)
T KOG0663|consen  149 MDK---------IY-----IVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHK  213 (419)
T ss_pred             cce---------ee-----eeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccC
Confidence            222         22     37999986 8999998877788888999999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      |.+|++|||+||.+.++                                                               
T Consensus       214 G~lKiaDFGLAR~ygsp---------------------------------------------------------------  230 (419)
T KOG0663|consen  214 GILKIADFGLAREYGSP---------------------------------------------------------------  230 (419)
T ss_pred             CcEEecccchhhhhcCC---------------------------------------------------------------
Confidence            99999999999987632                                                               


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~e  524 (1092)
                                                              ...+|..+-|.||+|||+|.| ..|+.++|+||+|||+.|
T Consensus       231 ----------------------------------------~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE  270 (419)
T KOG0663|consen  231 ----------------------------------------LKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAE  270 (419)
T ss_pred             ----------------------------------------cccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHH
Confidence                                                    234567889999999999999 569999999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhcccc------CCC----------------------CCCCC--CChhHHHHHHhccccCCC
Q 001366          525 LFGR---FDSERALAAAMSDLRDR------ILP----------------------PSFLS--ENPKEAGFCLWQLHPEPL  571 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~~~~------~~p----------------------~~~~~--~~~~~~~li~~lL~~dP~  571 (1092)
                      |+.+   |++..+..+...+.+.-      +.|                      ..|..  .+....+|+..+|.+||.
T Consensus       271 ~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~  350 (419)
T KOG0663|consen  271 LLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPG  350 (419)
T ss_pred             HHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCcc
Confidence            9985   88877777665544321      111                      11222  336678999999999999


Q ss_pred             CCCCHHHHhhhhhhhhhhccchHhhhcc
Q 001366          572 SRPTTREILQSEVTNEFQEVCAEELLSS  599 (1092)
Q Consensus       572 ~Rpsa~eiL~~~~~~~~~~~~~~~~~~~  599 (1092)
                      +|.||.|.|+|+||.+.+.+...+..+-
T Consensus       351 kR~tA~~~L~h~~F~e~P~p~~P~~~Pt  378 (419)
T KOG0663|consen  351 KRITAEDGLKHEYFRETPLPIDPSMFPT  378 (419)
T ss_pred             ccccHHHhhcccccccCCCCCChhhcCC
Confidence            9999999999999999877766444433

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-37  Score=338.01  Aligned_cols=253  Identities=18%  Similarity=0.223  Sum_probs=202.8

Q ss_pred             hHHHhhhcc-c-cceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCC-CCCCCccccceecCC-CCC
Q 001366          213 EFFVKTTLK-G-KGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNA-SPKPVGVGTAVVSNG-SLD  288 (1092)
Q Consensus       213 ~~~~~~~~~-g-~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~  288 (1092)
                      .|.+++.+| | .|-||+|..    .+.++.+|+|-.-..--.-......|+++-|++.+ ||||+.+.+...-+. .++
T Consensus        11 RY~~i~klGDGTfGsV~la~~----~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~   86 (538)
T KOG0661|consen   11 RYTVIRKLGDGTFGSVYLAKS----KETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILY   86 (538)
T ss_pred             HHHHHHHhcCCcceeEEEeee----cCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEe
Confidence            488888887 3 799999998    45567777733222222245566778888777777 999999888766544 233


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+|||+ ..+|.++++.+++.+++..++.|+.||+.||+|+|.+|+.||||||+|||+.....|
T Consensus        87 ----------------fVfE~M-d~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~i  149 (538)
T KOG0661|consen   87 ----------------FVFEFM-DCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVI  149 (538)
T ss_pred             ----------------eeHHhh-hhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEeccccee
Confidence                            156655 579999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+||....                                                                   
T Consensus       150 KiaDFGLARev~S-------------------------------------------------------------------  162 (538)
T KOG0661|consen  150 KIADFGLAREVRS-------------------------------------------------------------------  162 (538)
T ss_pred             Eeccccccccccc-------------------------------------------------------------------
Confidence            9999999998651                                                                   


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                           ...+|.++-|+||+|||+|.. +.|+.++||||+|||++|+.+
T Consensus       163 -------------------------------------kpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~s  205 (538)
T KOG0661|consen  163 -------------------------------------KPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYS  205 (538)
T ss_pred             -------------------------------------CCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHH
Confidence                                                 223557889999999999876 779999999999999999986


Q ss_pred             --C-CCcHHHHHHHHHhcccc--------------------CCC--------CCCCCCChhHHHHHHhccccCCCCCCCH
Q 001366          528 --R-FDSERALAAAMSDLRDR--------------------ILP--------PSFLSENPKEAGFCLWQLHPEPLSRPTT  576 (1092)
Q Consensus       528 --~-f~~~~~~~~~~~~~~~~--------------------~~p--------~~~~~~~~~~~~li~~lL~~dP~~Rpsa  576 (1092)
                        + |++..+..++++....-                    .+|        ..++..++++..++..||.+||.+||||
T Consensus       206 LrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA  285 (538)
T KOG0661|consen  206 LRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTA  285 (538)
T ss_pred             hcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccH
Confidence              3 88888887776654321                    111        1134567889999999999999999999


Q ss_pred             HHHhhhhhhhhhhc
Q 001366          577 REILQSEVTNEFQE  590 (1092)
Q Consensus       577 ~eiL~~~~~~~~~~  590 (1092)
                      .++|+||||.....
T Consensus       286 ~~al~~pffq~~~~  299 (538)
T KOG0661|consen  286 SQALQHPFFQVGRA  299 (538)
T ss_pred             HHHhcCcccccccc
Confidence            99999999987543

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.2e-36  Score=313.13  Aligned_cols=244  Identities=16%  Similarity=0.141  Sum_probs=187.6

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccc-cccccccCchh-hHhhhhhhhhhccCCCCCCCccccceecCC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDT-KAFVTTTMPSD-AALKAAGAMMVASNASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (1092)
                      .-+.|.|.+..+  .+|.|||....   .. +..++- +|..+. ++.. -..-+++..+|+.++||||+..+.-...+.
T Consensus        17 ~l~~y~Il~~IG~GsFg~vykv~~~---~~-g~l~a~K~i~f~~-md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~   91 (375)
T KOG0591|consen   17 TLADYQILKKIGRGSFGEVYKVQCL---LD-GKLVALKKIQFGM-MDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIED   91 (375)
T ss_pred             cHHHHHHHHHHcCCcchheEEeeec---cC-cchhhhhhcchhh-ccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhcc
Confidence            345677766655  47999999862   22 333333 444221 2222 233567888999999999997555222111


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHh---hcCCCCCHHHHHHHHHHHHHHHHHhhh--cC--ccccCCCCC
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLN---ARGHKGKRIECLYIFRQIVALVDYHHT--QG--VTFLDLKPS  358 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~---~~~~~~~~~~~~~i~~qil~~l~~lHs--~g--IvHrDLKP~  358 (1092)
                      +.       +       -+++||+|++|+|...|+   +.++.+++.+++.+|.|++.||..||+  ..  |+||||||.
T Consensus        92 ~e-------v-------lnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPa  157 (375)
T KOG0591|consen   92 NE-------V-------LNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPA  157 (375)
T ss_pred             ch-------h-------hHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcch
Confidence            11       1       134899999999999994   456778888999999999999999999  45  999999999


Q ss_pred             CeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcc
Q 001366          359 SFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKI  438 (1092)
Q Consensus       359 Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1092)
                      ||+|+.+|.||+.|||++|.+...                                                        
T Consensus       158 NIFl~~~gvvKLGDfGL~r~l~s~--------------------------------------------------------  181 (375)
T KOG0591|consen  158 NIFLTANGVVKLGDFGLGRFLSSK--------------------------------------------------------  181 (375)
T ss_pred             heEEcCCCceeeccchhHhHhcch--------------------------------------------------------
Confidence            999999999999999999986511                                                        


Q ss_pred             cccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhh
Q 001366          439 ETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSL  518 (1092)
Q Consensus       439 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSL  518 (1092)
                                                                     .+...+.+|||.|||||.+.+.+|+++||||||
T Consensus       182 -----------------------------------------------~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWsl  214 (375)
T KOG0591|consen  182 -----------------------------------------------TTFAHSLVGTPYYMSPERIHESGYNFKSDIWSL  214 (375)
T ss_pred             -----------------------------------------------hHHHHhhcCCCcccCHHHHhcCCCCcchhHHHH
Confidence                                                           011237899999999999999999999999999


Q ss_pred             hHHHHHHcC---CCCcHHHHHHHHHhccccCCCCCC-CCCChhHHHHHHhccccCCCCCCCH
Q 001366          519 GVLFFELFG---RFDSERALAAAMSDLRDRILPPSF-LSENPKEAGFCLWQLHPEPLSRPTT  576 (1092)
Q Consensus       519 Gvll~ell~---~f~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~li~~lL~~dP~~Rpsa  576 (1092)
                      ||++|||+.   ||.+. ....+...+.+...||.+ .-.+.++..++..|+..||..||++
T Consensus       215 GCllyEMcaL~~PF~g~-n~~~L~~KI~qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t  275 (375)
T KOG0591|consen  215 GCLLYEMCALQSPFYGD-NLLSLCKKIEQGDYPPLPDEHYSTDLRELINMCIAVDPEQRPDT  275 (375)
T ss_pred             HHHHHHHHhcCCCcccc-cHHHHHHHHHcCCCCCCcHHHhhhHHHHHHHHHccCCcccCCCc
Confidence            999999984   68877 566666777777777666 4567889999999999999999998

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=293.69  Aligned_cols=284  Identities=15%  Similarity=0.217  Sum_probs=246.2

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .|++|.+.|.++.|++|.++|++++.||++.|||.-+..       ......-....|..++|+|. ++++|+|+.|+..
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-------K~haipl~s~WVMtCA~sPS-g~~VAcGGLdN~C  121 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN-------KVHAIPLPSSWVMTCAYSPS-GNFVACGGLDNKC  121 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc-------ceeEEecCceeEEEEEECCC-CCeEEecCcCcee
Confidence            577999999999999999999999999999999976521       11122234688999999998 9999999999999


Q ss_pred             EEEECCCC------ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCC
Q 001366          854 KLWDACTG------QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSS  926 (1092)
Q Consensus       854 ~IWD~~tg------~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~  926 (1092)
                      .||++.+.      +..+.+.+|++-+.|+.|..  ..+|+|+|.|.+..+||+++++.+..|. |.+.|.+++++|...
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence            99999855      35667899999999999986  4679999999999999999999999998 678999999999555


Q ss_pred             eEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc--
Q 001366          927 HLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS-- 1003 (1092)
Q Consensus       927 ~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~-- 1003 (1092)
                      +.|++|+.|+..++||+|.+. .+.++.+|...|.+|+|. ++.-+++||.|+++++||++.        ...+..+.  
T Consensus       200 ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa--------D~~~a~ys~~  270 (343)
T KOG0286|consen  200 NTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA--------DQELAVYSHD  270 (343)
T ss_pred             CeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC--------CcEEeeeccC
Confidence            799999999999999999985 578899999999999999 555699999999999999994        33344443  


Q ss_pred             CCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecC
Q 001366         1004 GHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSS 1083 (1092)
Q Consensus      1004 ~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~D 1083 (1092)
                      .-..+|++|+||..|++|.+|..|.++.+||.-.++.+..              +.+|...|+++..+|||..|+||+.|
T Consensus       271 ~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~--------------L~GHeNRvScl~~s~DG~av~TgSWD  336 (343)
T KOG0286|consen  271 SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV--------------LAGHENRVSCLGVSPDGMAVATGSWD  336 (343)
T ss_pred             cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEE--------------eeccCCeeEEEEECCCCcEEEecchh
Confidence            2345789999999999999999999999999877665543              35889999999999999999999999


Q ss_pred             CeEEEEE
Q 001366         1084 GCIKVLQ 1090 (1092)
Q Consensus      1084 G~V~vW~ 1090 (1092)
                      ..+|||.
T Consensus       337 s~lriW~  343 (343)
T KOG0286|consen  337 STLRIWA  343 (343)
T ss_pred             HheeecC
Confidence            9999994

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.5e-35  Score=319.40  Aligned_cols=279  Identities=18%  Similarity=0.326  Sum_probs=246.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEEC
Q 001366          779 ANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDA  858 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~  858 (1092)
                      ..+|..|.|.|+|+.|++|+..|.+.+|+...       .....+...|+++|.++.|+++ +.+++||+.+|.|++|+.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-------fnFEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqp  167 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-------FNFETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQP  167 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCce-------eeHHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEeccc
Confidence            45899999999999999999999999999753       3344556779999999999998 999999999999999997


Q ss_pred             CCCceEEEeecc-CccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCC
Q 001366          859 CTGQTVSHYIEH-EKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADY  936 (1092)
Q Consensus       859 ~tg~~i~~l~~h-~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg  936 (1092)
                      .-. .++.+.+| ...|.+++|+| +...|+|||+||+|+|||....+.-..+. |.-.|.|++|+|..+ ++++|+.|.
T Consensus       168 nmn-nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-LiasgskDn  244 (464)
T KOG0284|consen  168 NMN-NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDN  244 (464)
T ss_pred             chh-hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEccCCc
Confidence            544 34444444 58999999999 77889999999999999999888877777 567899999999986 999999999


Q ss_pred             eEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEe
Q 001366          937 RTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLS 1015 (1092)
Q Consensus       937 ~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s 1015 (1092)
                      .|++||.|++.+ +.++.+|+..|..+.|. ++++|+|+|.|..++++|++        ..+.+.++.+|...|++++|+
T Consensus       245 lVKlWDprSg~c-l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR--------~mkEl~~~r~Hkkdv~~~~Wh  315 (464)
T KOG0284|consen  245 LVKLWDPRSGSC-LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR--------TMKELFTYRGHKKDVTSLTWH  315 (464)
T ss_pred             eeEeecCCCcch-hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh--------HhHHHHHhhcchhhheeeccc
Confidence            999999999874 68889999999999999 77899999999999999999        456688999999999999999


Q ss_pred             cC-CCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1016 TA-DGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1016 pd-g~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      |- ..+|++|+.||.|..|.+...+++..+.             ..|...|++++|+|-|.+|++|+.|.++++|.
T Consensus       316 P~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-------------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  316 PLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-------------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             cccccceeeccCCCceEEEeccccccccCCC-------------cccccceeeeeccccceeEeecCCCcceeeec
Confidence            95 5689999999999999987666665443             57889999999999999999999999999994

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.1e-36  Score=333.00  Aligned_cols=255  Identities=20%  Similarity=0.208  Sum_probs=202.5

Q ss_pred             ccceeeeCCCCCccccccccccc-cccccccCchhhHhhhhhhhhhccCCCCCCCccccceecC--CCCCCCccCCCCCc
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDT-KAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSN--GSLDLGARTGVPAS  298 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  298 (1092)
                      =.|-|||+..    ..++..+|. ||........-...++|++++|++..||||+++.......  +..++         
T Consensus       129 Tyg~VYkAr~----~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl---------  195 (560)
T KOG0600|consen  129 TYGQVYKARD----LETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL---------  195 (560)
T ss_pred             chhheeEeee----cccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE---------
Confidence            4799999998    345666666 4444443455567899999999999999999988887765  23331         


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                             +.||++. +|.-++...+-+++..++.+||+||++||+|||++||+|||||.+||||+.+|.+||+|||||+.
T Consensus       196 -------VFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~  267 (560)
T KOG0600|consen  196 -------VFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARF  267 (560)
T ss_pred             -------EEecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceee
Confidence                   5666654 88889988888999999999999999999999999999999999999999999999999999987


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +...                                                                            
T Consensus       268 y~~~----------------------------------------------------------------------------  271 (560)
T KOG0600|consen  268 YTPS----------------------------------------------------------------------------  271 (560)
T ss_pred             ccCC----------------------------------------------------------------------------
Confidence            5410                                                                            


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                ....+|..+-|.||+|||+|.| ..|+.++|+||+||||.||+.+   |.+..+
T Consensus       272 --------------------------~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tE  325 (560)
T KOG0600|consen  272 --------------------------GSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTE  325 (560)
T ss_pred             --------------------------CCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccH
Confidence                                      0122568899999999999999 6699999999999999999986   777777


Q ss_pred             HHHHHHhcccc-----------CCC----------------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          535 LAAAMSDLRDR-----------ILP----------------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       535 ~~~~~~~~~~~-----------~~p----------------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ..++..+.+-.           .+|                ..|...++...+||..||..||.+|.||.++|+|+||..
T Consensus       326 veQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t  405 (560)
T KOG0600|consen  326 VEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQSEYFTT  405 (560)
T ss_pred             HHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhcCccccc
Confidence            77765544321           111                013445677889999999999999999999999999977


Q ss_pred             hhccchHhhhcc
Q 001366          588 FQEVCAEELLSS  599 (1092)
Q Consensus       588 ~~~~~~~~~~~~  599 (1092)
                      .+..+....++.
T Consensus       406 ~p~~~~p~~Lp~  417 (560)
T KOG0600|consen  406 EPLPCDPSSLPK  417 (560)
T ss_pred             CCCCCCcccCCC
Confidence            666555433333

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-36  Score=323.58  Aligned_cols=258  Identities=18%  Similarity=0.191  Sum_probs=199.0

Q ss_pred             ccccceeeeCCCCCccccccccccc-cccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDT-KAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+..|+||++..    +..++.+|. ||.-.-.......+..++.++++..+|+||+.+.+....... .  ....+   
T Consensus        32 ~GAyGvVcsA~~----~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~-~--~f~Dv---  101 (359)
T KOG0660|consen   32 RGAYGVVCSAKD----KRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSR-D--KFNDV---  101 (359)
T ss_pred             CcceeeEEEEEE----cCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccc-c--cccee---
Confidence            345799999887    344566666 444344567788999999999999999999987666443110 0  11111   


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .+++|++ +.+|...|+... .++...+..++.|||.||.|+|+.+|+||||||+|+|++.++.+|++|||+||.
T Consensus       102 -----YiV~elM-etDL~~iik~~~-~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~  174 (359)
T KOG0660|consen  102 -----YLVFELM-ETDLHQIIKSQQ-DLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARY  174 (359)
T ss_pred             -----EEehhHH-hhHHHHHHHcCc-cccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceee
Confidence                 2245554 889999998764 377779999999999999999999999999999999999999999999999998


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +...                                                                            
T Consensus       175 ~~~~----------------------------------------------------------------------------  178 (359)
T KOG0660|consen  175 LDKF----------------------------------------------------------------------------  178 (359)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            6510                                                                            


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                               .....+|..+.|+||+|||++.. ..||.++||||+||||.|||++   |++.+.
T Consensus       179 -------------------------~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~  233 (359)
T KOG0660|consen  179 -------------------------FEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDY  233 (359)
T ss_pred             -------------------------CcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCch
Confidence                                     01234568899999999999876 7799999999999999999986   777655


Q ss_pred             HHHHHHhcccc------------------------C-----CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAAMSDLRDR------------------------I-----LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~~~~~~~~------------------------~-----~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ..+....+..-                        .     +...|+..+|...+|+.+||..||.+|+|++|+|+|||+
T Consensus       234 v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl  313 (359)
T KOG0660|consen  234 VHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYL  313 (359)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhh
Confidence            44442222110                        1     112367788999999999999999999999999999999


Q ss_pred             hhhhccchHh
Q 001366          586 NEFQEVCAEE  595 (1092)
Q Consensus       586 ~~~~~~~~~~  595 (1092)
                      ....++..+.
T Consensus       314 ~~~hdp~dEP  323 (359)
T KOG0660|consen  314 APYHDPEDEP  323 (359)
T ss_pred             hhhcCCccCC
Confidence            9887777644

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.3e-32  Score=301.28  Aligned_cols=315  Identities=23%  Similarity=0.307  Sum_probs=265.9

Q ss_pred             ccCCCCc-E--EeEcCCeEEEEEccc-c---eEEeeEEeee-e----cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 001366          741 IQNPTDR-L--GAFFDGLCKYARYSK-F---EVQGMLRTGE-F----NNSANVICSISFDRDEDHFAAAGVSKKIKIFEF  808 (1092)
Q Consensus       741 ~~~~~~~-l--~~~~D~~~k~w~~~~-~---~~~~~l~~~~-l----~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~  808 (1092)
                      .|+|-.. +  +...|.+.++|++.. .   .....+++.. +    ......|++++|+.+|..||+|+.||.++||+.
T Consensus       185 ~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~  264 (524)
T KOG0273|consen  185 AWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNK  264 (524)
T ss_pred             ecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEec
Confidence            4667443 3  445777889998753 1   1111122110 1    123468999999999999999999999999998


Q ss_pred             CCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEE
Q 001366          809 NALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLA  888 (1092)
Q Consensus       809 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~la  888 (1092)
                      ..        ......-.|+++|.++.|+.. +++|++++.||++.|||..+|.....|.-|..+..+|.|-.  ..-|+
T Consensus       265 ~G--------~l~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~  333 (524)
T KOG0273|consen  265 DG--------NLISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFA  333 (524)
T ss_pred             Cc--------hhhhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec--CceEe
Confidence            75        222334468999999999998 99999999999999999999999999999999878999985  46799


Q ss_pred             EEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC
Q 001366          889 SGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD  967 (1092)
Q Consensus       889 Sgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~  967 (1092)
                      +++.|+.|+|+-+....++.++. |++.|.++.|+|.+. +|++++.|++++||...... ....+.+|.+.|..+.|+|
T Consensus       334 ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp  411 (524)
T KOG0273|consen  334 TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSP  411 (524)
T ss_pred             ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecC
Confidence            99999999999999999998887 678999999999995 99999999999999987654 3567889999999999973


Q ss_pred             C----------CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCC
Q 001366          968 S----------GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSL 1037 (1092)
Q Consensus       968 ~----------~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~ 1037 (1092)
                      .          ..+++++.|++|++||+.        .+.++.+|..|+.+|++++|+|+|+|+|+|+.||.|.||++.+
T Consensus       412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~--------~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  412 TGPVTSNPNMNLMLASASFDSTVKLWDVE--------SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             CCCccCCCcCCceEEEeecCCeEEEEEcc--------CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence            2          258999999999999998        5788999999999999999999999999999999999999999


Q ss_pred             CCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1038 PMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1038 ~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++.+....-               +..|..+||+.+|..|+++-+||.++|.++
T Consensus       484 ~~l~~s~~~---------------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  484 GKLVKSYQG---------------TGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             hheeEeecC---------------CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            988877642               455999999999999999999999999886

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-32  Score=283.62  Aligned_cols=301  Identities=15%  Similarity=0.151  Sum_probs=242.3

Q ss_pred             chhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 001366          723 NDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKK  802 (1092)
Q Consensus       723 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~  802 (1092)
                      ..++++|.+++.+++.... .++..++++.|.++.+|.+..-+.........|.+|+..|..+..++||++.++++.|++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eeeecCCCceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence            3568889999888766433 677788999999999999865444333334468899999999999999999999999999


Q ss_pred             EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeecc--CccEEEEEEe
Q 001366          803 IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEH--EKRAWSVDFS  880 (1092)
Q Consensus       803 I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h--~~~V~sv~fs  880 (1092)
                      +++||+.+       ......+.+|...|.+++|+++ ...++|||.|.+|++|++.. .+..+...+  .+.|.||.|+
T Consensus        87 lrlWDl~~-------g~~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   87 LRLWDLAT-------GESTRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             EEEEEecC-------CcEEEEEEecCCceEEEEecCC-CceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEc
Confidence            99999976       2334456789999999999998 88999999999999999854 454454433  7889999999


Q ss_pred             cCC-CCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCC
Q 001366          881 QVH-PTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK  958 (1092)
Q Consensus       881 p~~-~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~  958 (1092)
                      |.. .-.|+++|.|++||+||+++-+....+. |...++.++++|||. ++++|+.||.+.+||++.++. +.+ .+|..
T Consensus       158 P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~-lys-l~a~~  234 (315)
T KOG0279|consen  158 PNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN-LYS-LEAFD  234 (315)
T ss_pred             CCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce-eEe-ccCCC
Confidence            953 5689999999999999999988777766 677899999999996 999999999999999998876 333 46889


Q ss_pred             CeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeE-EEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCC
Q 001366          959 AVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSL-TFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       959 ~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~-~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                      .|.+++|+|+.+.+++..+..|+|||+............... ..........+++|+++|..|.+|-.|+.|++|.+.
T Consensus       235 ~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  235 IVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            999999999999888888999999999854322111111110 111223345678999999999999999999999753

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-34  Score=332.03  Aligned_cols=253  Identities=20%  Similarity=0.229  Sum_probs=192.8

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccc----cCchhhHhhhhhhhhhccCC-CCCCCcccccee
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTT----TMPSDAALKAAGAMMVASNA-SPKPVGVGTAVV  282 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  282 (1092)
                      ....|.+.++++  ..|.||.|...    ..++.++.|+.--.    ..........++...++..+ ||||+.+.+...
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~----~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~   90 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHR----LTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFA   90 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeec----cCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEe
Confidence            344677777776  47999999762    22455666542111    11112233446777888888 999998777655


Q ss_pred             cCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE
Q 001366          283 SNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL  362 (1092)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill  362 (1092)
                      ...-.+                .+||||.||+|.++|...++ +.+.+++.+|+||++||+|||++||+||||||+|||+
T Consensus        91 t~~~~~----------------ivmEy~~gGdL~~~i~~~g~-l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENill  153 (370)
T KOG0583|consen   91 TPTKIY----------------IVMEYCSGGDLFDYIVNKGR-LKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILL  153 (370)
T ss_pred             cCCeEE----------------EEEEecCCccHHHHHHHcCC-CChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEe
Confidence            433333                38999999999999988554 5557999999999999999999999999999999999


Q ss_pred             ccC-CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          363 LQS-NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       363 ~~~-~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      +.+ +++||+|||++.....                                                            
T Consensus       154 d~~~~~~Kl~DFG~s~~~~~------------------------------------------------------------  173 (370)
T KOG0583|consen  154 DGNEGNLKLSDFGLSAISPG------------------------------------------------------------  173 (370)
T ss_pred             cCCCCCEEEeccccccccCC------------------------------------------------------------
Confidence            999 9999999999876420                                                            


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC-C-Cccccchhhh
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV-C-TTSSNIYSLG  519 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~-~-t~~sDIwSLG  519 (1092)
                                                                 +...+.+.+||+.|+|||++.+.. | +.++||||+|
T Consensus       174 -------------------------------------------~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~G  210 (370)
T KOG0583|consen  174 -------------------------------------------EDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLG  210 (370)
T ss_pred             -------------------------------------------CCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhH
Confidence                                                       011234789999999999999966 7 5899999999


Q ss_pred             HHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          520 VLFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       520 vll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      |+||.|++|   |.............+....-|.... ++++..|+.+||.+||..|+++.+|+.||||..
T Consensus       211 ViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~-S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  211 VILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLL-SPEARSLIEKMLVPDPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             HHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCcC-CHHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence            999999997   5544333333444444333344333 999999999999999999999999999999987

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.2e-33  Score=295.79  Aligned_cols=284  Identities=21%  Similarity=0.295  Sum_probs=256.0

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|..+|+.+-|+|+-..+++++.|.+|++||+.+.       .......+|...|.+|+|+.. +.+||+||.|-.+
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-------~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl~~  174 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG-------ELERSLRGHTDSVFDISFDAS-GKYLATCSSDLSA  174 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccch-------hhhhhhhccccceeEEEEecC-ccEEEecCCccch
Confidence            35689999999999999999999999999999998762       234456789999999999998 8999999999999


Q ss_pred             EEEECCC-CceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEE
Q 001366          854 KLWDACT-GQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       854 ~IWD~~t-g~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~lat  931 (1092)
                      ++||..+ .++++.+.+|...|.++.|-| .+.+++|++.|.+|+.|++.++.|+.++. |...|..++.+.||. ++|+
T Consensus       175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As  252 (406)
T KOG0295|consen  175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIAS  252 (406)
T ss_pred             hheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-EEEe
Confidence            9999987 468888899999999999999 78999999999999999999999999998 566899999999994 9999


Q ss_pred             EECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC-----------C-----CEEEEEECCCeEEEEEcCCCCCCCCCC
Q 001366          932 GSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD-----------S-----GTLVTASTDNKLKLWDLKRTSHTGPST  995 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~-----------~-----~~L~Sgs~Dg~I~vWDl~~~~~~~~~~  995 (1092)
                      ++.|.+|++|-+.+.. ....+..|..+|-+++|.+           +     .+++++|.|++|++||+.        +
T Consensus       253 ~s~dqtl~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--------t  323 (406)
T KOG0295|consen  253 CSNDQTLRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS--------T  323 (406)
T ss_pred             cCCCceEEEEEeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc--------C
Confidence            9999999999998764 3456789999999999931           1     379999999999999999        6


Q ss_pred             CceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCC
Q 001366          996 NACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD 1075 (1092)
Q Consensus       996 ~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~ 1075 (1092)
                      +.|+.++.+|.++|..++|+|.|+||+++.+|++++|||++..+++...              ..|..+|+++.|+.+..
T Consensus       324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~--------------~ah~hfvt~lDfh~~~p  389 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL--------------EAHEHFVTSLDFHKTAP  389 (406)
T ss_pred             CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc--------------CCCcceeEEEecCCCCc
Confidence            7899999999999999999999999999999999999999988776543              46788999999999999


Q ss_pred             EEEEEecCCeEEEEE
Q 001366         1076 MVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1076 ~Lasgs~DG~V~vW~ 1090 (1092)
                      +++||+.|..++||+
T Consensus       390 ~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  390 YVVTGSVDQTVKVWE  404 (406)
T ss_pred             eEEeccccceeeeee
Confidence            999999999999997

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2e-34  Score=329.55  Aligned_cols=262  Identities=22%  Similarity=0.248  Sum_probs=206.2

Q ss_pred             ecccCCchhHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccc
Q 001366          205 MLSKSGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTA  280 (1092)
Q Consensus       205 ~~~~~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (1092)
                      +.+..-..=+.+-+||+  +.|.|-.|.-    .++|+.+|+||.....  ..++...--++..+|+-..|||+..+++.
T Consensus         5 ~~~~~tiGpwkLgkTLG~Gstg~vrlakh----~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydV   80 (786)
T KOG0588|consen    5 MSHKNTIGPWKLGKTLGKGSTGCVRLAKH----AETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDV   80 (786)
T ss_pred             ccccccccceeccccccCCCCceehhhhc----ccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeee
Confidence            45555555577777776  4677777776    6678999998876653  23334444555666777899999988777


Q ss_pred             eecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCe
Q 001366          281 VVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSF  360 (1092)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Ni  360 (1092)
                      -.-+.-++                ++.||++||.|+++|-.+|..++. ++.++|+||+.||.|||..+|+||||||+|+
T Consensus        81 we~~~~ly----------------lvlEyv~gGELFdylv~kG~l~e~-eaa~ff~QIi~gv~yCH~~~icHRDLKpENl  143 (786)
T KOG0588|consen   81 WENKQHLY----------------LVLEYVPGGELFDYLVRKGPLPER-EAAHFFRQILDGVSYCHAFNICHRDLKPENL  143 (786)
T ss_pred             eccCceEE----------------EEEEecCCchhHHHHHhhCCCCCH-HHHHHHHHHHHHHHHHhhhcceeccCCchhh
Confidence            55444444                389999999999999988876666 9999999999999999999999999999999


Q ss_pred             EEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccc
Q 001366          361 KLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIET  440 (1092)
Q Consensus       361 ll~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1092)
                      ||+..++|||+|||+|..-.                                                            
T Consensus       144 LLd~~~nIKIADFGMAsLe~------------------------------------------------------------  163 (786)
T KOG0588|consen  144 LLDVKNNIKIADFGMASLEV------------------------------------------------------------  163 (786)
T ss_pred             hhhcccCEeeeccceeeccc------------------------------------------------------------
Confidence            99999999999999886522                                                            


Q ss_pred             cCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-Cccccchhhh
Q 001366          441 ANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLG  519 (1092)
Q Consensus       441 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLG  519 (1092)
                                                                  +..-+.+.||+|.|+|||+++|.+| +.++||||.|
T Consensus       164 --------------------------------------------~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCG  199 (786)
T KOG0588|consen  164 --------------------------------------------PGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCG  199 (786)
T ss_pred             --------------------------------------------CCccccccCCCcccCCchhhcCCCCCCCccccchhH
Confidence                                                        1122346799999999999999998 7899999999


Q ss_pred             HHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhccch
Q 001366          520 VLFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCA  593 (1092)
Q Consensus       520 vll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~~~  593 (1092)
                      ||||.||+|   |+.++-...+.+..+...--|.  ..++++.+||.+||..||+.|+|++||+.|||+.+......
T Consensus       200 VILfALLtG~LPFdDdNir~LLlKV~~G~f~MPs--~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~~~~~~  274 (786)
T KOG0588|consen  200 VILFALLTGKLPFDDDNIRVLLLKVQRGVFEMPS--NISSEAQDLLRRMLDVDPSTRITTEEILKHPFLSGYTSLPS  274 (786)
T ss_pred             HHHHHHHhCCCCCCCccHHHHHHHHHcCcccCCC--cCCHHHHHHHHHHhccCccccccHHHHhhCchhhcCCCCCh
Confidence            999999996   8765555555544444332233  34899999999999999999999999999999987655443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.8e-33  Score=321.50  Aligned_cols=292  Identities=19%  Similarity=0.315  Sum_probs=241.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC------------------------CCCcccccceeeecCCCCeE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALF------------------------NDSVDVYYPAVEMSNRSKLS  832 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~------------------------~~~~~~~~~~~~~~h~~~V~  832 (1092)
                      +....++|+.|++|+.+||.|-.|..|++|.+....                        .+...........+|.++|.
T Consensus       376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy  455 (707)
T KOG0263|consen  376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY  455 (707)
T ss_pred             EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence            445679999999999999999999999999987311                        00111222334789999999


Q ss_pred             EEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-
Q 001366          833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-  911 (1092)
Q Consensus       833 ~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-  911 (1092)
                      .+.|+|+ .++|++||.|++||+|.+.+..++..++||..+||+|.|+| .|-+|||||.|++.++|.....++++.+. 
T Consensus       456 g~sFsPd-~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifag  533 (707)
T KOG0263|consen  456 GCSFSPD-RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAG  533 (707)
T ss_pred             eeeeccc-ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhcc
Confidence            9999998 99999999999999999999999999999999999999999 89999999999999999999999998887 


Q ss_pred             cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCC
Q 001366          912 NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSH  990 (1092)
Q Consensus       912 ~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~  990 (1092)
                      |-+.|.|++|+|+. +++++||.|.+|++||+.++.. +..+.||.++|.+|+|+ .+.+|++|+.||.|++||+.    
T Consensus       534 hlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~----  607 (707)
T KOG0263|consen  534 HLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA----  607 (707)
T ss_pred             cccccceEEECCcc-cccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC----
Confidence            67899999999998 4999999999999999999864 78899999999999999 67799999999999999999    


Q ss_pred             CCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCce-eeeec----cccCCCC-----CccccCC
Q 001366          991 TGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPI-TSYKF----GSIDPIS-----GKETDDD 1060 (1092)
Q Consensus       991 ~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i-~~~~~----~~~~~i~-----~~~~~~~ 1060 (1092)
                          .+..+..+.+|++.|+++.||.+|..||+||.|++|++||+...... ...++    +......     .......
T Consensus       608 ----~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~t  683 (707)
T KOG0263|consen  608 ----NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYT  683 (707)
T ss_pred             ----CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeee
Confidence                45678899999999999999999999999999999999997643322 00000    0000000     0011223


Q ss_pred             CCCCEEEEEEeCCCCEEEEE
Q 001366         1061 NGLFVSSVCWRRRSDMVVAA 1080 (1092)
Q Consensus      1061 h~~~V~sva~spd~~~Lasg 1080 (1092)
                      ...+|..|.|.-..-.|+.|
T Consensus       684 K~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  684 KNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             cCceEEEEEEeccceeEEec
Confidence            45588899998776555554

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.7e-34  Score=328.51  Aligned_cols=239  Identities=18%  Similarity=0.191  Sum_probs=192.3

Q ss_pred             ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      |+-.+|++..    ..+++.+|+||..-...  ..+-.....++.+-+..+||||+.++.-.....+.++          
T Consensus        30 gFA~cYe~~~----~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYi----------   95 (592)
T KOG0575|consen   30 GFARCYEARD----LDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYI----------   95 (592)
T ss_pred             cceEEEEEEE----cCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEE----------
Confidence            5667888887    33578888877643322  2233445667778899999999998888777777774          


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                            +.|.|..++|.++++++ ..+++.+++.|++||+.||.|||++||+|||||-+||+|+.+.+|||+|||||..+
T Consensus        96 ------vLELC~~~sL~el~Krr-k~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~l  168 (592)
T KOG0575|consen   96 ------VLELCHRGSLMELLKRR-KPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQL  168 (592)
T ss_pred             ------EEEecCCccHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeee
Confidence                  89999999999999955 46777799999999999999999999999999999999999999999999999876


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ..+.                                                                            
T Consensus       169 e~~~----------------------------------------------------------------------------  172 (592)
T KOG0575|consen  169 EYDG----------------------------------------------------------------------------  172 (592)
T ss_pred             cCcc----------------------------------------------------------------------------
Confidence            5110                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALA  536 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~  536 (1092)
                                                 ..-.+.||||-|.|||++.....++.+||||+|||||-||.|   |....-..
T Consensus       173 ---------------------------Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vke  225 (592)
T KOG0575|consen  173 ---------------------------ERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKE  225 (592)
T ss_pred             ---------------------------cccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHH
Confidence                                       001278999999999999999999999999999999999986   55443333


Q ss_pred             HHHHhcc-ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          537 AAMSDLR-DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       537 ~~~~~~~-~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ....... +...|.   ..+++.++||..||.++|.+|||+.+||.|+||..
T Consensus       226 ty~~Ik~~~Y~~P~---~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~~  274 (592)
T KOG0575|consen  226 TYNKIKLNEYSMPS---HLSAEAKDLIRKLLRPNPSERPSLDEVLDHPFFKS  274 (592)
T ss_pred             HHHHHHhcCccccc---ccCHHHHHHHHHHhcCCcccCCCHHHHhcCHhhhC
Confidence            3333333 233444   44899999999999999999999999999999944

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-34  Score=315.71  Aligned_cols=254  Identities=12%  Similarity=0.169  Sum_probs=195.4

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      +..|.+.+.++  .+||||+|...    ..+.++++|-..... ...-.+...++.++|...+|||||.+++....+...
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~----~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i   84 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHK----KSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFI   84 (429)
T ss_pred             cccceehhhccCcceEEEEEeEec----cCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeE
Confidence            34455555544  58999999973    334556654332221 222345567788899999999999988876655544


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC--
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS--  365 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~--  365 (1092)
                      +                .+||||.||+|.+||++++ .+++..+++++.||+.||++||+++||||||||.||||+..  
T Consensus        85 ~----------------lVMEyC~gGDLs~yi~~~~-~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~  147 (429)
T KOG0595|consen   85 Y----------------LVMEYCNGGDLSDYIRRRG-RLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTAR  147 (429)
T ss_pred             E----------------EEEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCC
Confidence            4                3899999999999998887 47777999999999999999999999999999999999865  


Q ss_pred             ----CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          366 ----NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       366 ----~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                          -.+||+|||+||.+....                                                          
T Consensus       148 ~~~~~~LKIADFGfAR~L~~~~----------------------------------------------------------  169 (429)
T KOG0595|consen  148 NDTSPVLKIADFGFARFLQPGS----------------------------------------------------------  169 (429)
T ss_pred             CCCCceEEecccchhhhCCchh----------------------------------------------------------
Confidence                358999999999866211                                                          


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                                                                    ...+.||++.|||||++....|+.|+|+||+|+|
T Consensus       170 ----------------------------------------------~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~I  203 (429)
T KOG0595|consen  170 ----------------------------------------------MAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTI  203 (429)
T ss_pred             ----------------------------------------------HHHHhhCCccccCHHHHHhccccchhhHHHHHHH
Confidence                                                          1227899999999999999999999999999999


Q ss_pred             HHHHcCC---CCcHHHHHHHHHhccccCCCCC-CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          522 FFELFGR---FDSERALAAAMSDLRDRILPPS-FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       522 l~ell~~---f~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ||++++|   |.............+.....|. ....++...+++..+|..+|.+|.+..+-+.|+++...+
T Consensus       204 lyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~~~~~~~l~~~p  275 (429)
T KOG0595|consen  204 LYQCLTGKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPLRELLISLLQRNPKDRISFEDFFDHPFLAANP  275 (429)
T ss_pred             HHHHHhCCCCccccCHHHHHHHHhccccccCchhhhccCchhhhhhHHHhcCccccCchHHhhhhhhcccCc
Confidence            9999986   5544444444433333333333 233456677999999999999999999999999987754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.4e-32  Score=276.95  Aligned_cols=275  Identities=17%  Similarity=0.212  Sum_probs=233.5

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc--eEEEee
Q 001366          791 EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ--TVSHYI  868 (1092)
Q Consensus       791 g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~--~i~~l~  868 (1092)
                      .-+||++|.|.+|++|...+       ..+.....-.++.|+.+...|+ +..||+++. ..||+||+++++  ++.+|.
T Consensus        10 ~viLvsA~YDhTIRfWqa~t-------G~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np~Pv~t~e   80 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALT-------GICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNPNPVATFE   80 (311)
T ss_pred             ceEEEeccCcceeeeeehhc-------CeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCCCceeEEe
Confidence            35899999999999999765       2333344445788999999998 888888875 689999999875  689999


Q ss_pred             ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc
Q 001366          869 EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA  948 (1092)
Q Consensus       869 ~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~  948 (1092)
                      +|++.|++|.|.. ++..++|||.||++||||++...+.+.+++.++|++|..+|+.. -|++|..+|.|++||+++...
T Consensus        81 ~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   81 GHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             ccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCcc
Confidence            9999999999999 99999999999999999999988888999999999999999985 788999999999999997643


Q ss_pred             ceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecC
Q 001366          949 PWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSES 1027 (1092)
Q Consensus       949 ~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D 1027 (1092)
                      ...........|.++... ++..++.+...|.+.+|++-...  ..+.-.++..+..|...+..+.+|||++|||++|.|
T Consensus       159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~--~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ--TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC--ccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence            323334455788999887 77788899999999999998532  222345677889999999999999999999999999


Q ss_pred             CcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1028 NEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1028 g~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .+++||+...-  +           ......++|...|+.++||.||.+|+||++|+.+++|++
T Consensus       237 ktv~iwn~~~~--~-----------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  237 KTVKIWNTDDF--F-----------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL  287 (311)
T ss_pred             ceEEEEecCCc--e-----------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence            99999987654  1           112345788899999999999999999999999999986

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3e-34  Score=322.38  Aligned_cols=262  Identities=16%  Similarity=0.152  Sum_probs=192.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc----CchhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT----MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      .|.+.+-++  ..-.||++...+    .+.+.|.||..-.-    .+..+..+-+ ..|...+.||-|++++.-..-+..
T Consensus        74 DF~Fg~~lGeGSYStV~~A~~~~----t~keYAiKVl~K~~Iike~KvkYV~~Ek-~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   74 DFKFGKILGEGSYSTVVLAREKA----TGKEYAIKVLDKRYIIKEKKVKYVTREK-EALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             hcchhheeccccceeEEEeeecC----CCceeeHhhhhHHHHHhhcccchhhHHH-HHHHHhhCCCCeEEEEEEeecccc
Confidence            344444444  356777777733    45566665542111    1222222222 234444599999987777666555


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      +|.                +++|+++|+|.++|++.|. +++..+++++.||++||+|||++|||||||||+||||+.++
T Consensus       149 LYF----------------vLe~A~nGdll~~i~K~Gs-fde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dm  211 (604)
T KOG0592|consen  149 LYF----------------VLEYAPNGDLLDLIKKYGS-FDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDG  211 (604)
T ss_pred             eEE----------------EEEecCCCcHHHHHHHhCc-chHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCC
Confidence            552                8999999999999998864 78879999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      ++||+|||.|+.+........-.                                                         
T Consensus       212 hikITDFGsAK~l~~~~~~~~~~---------------------------------------------------------  234 (604)
T KOG0592|consen  212 HIKITDFGSAKILSPSQKSQENP---------------------------------------------------------  234 (604)
T ss_pred             cEEEeeccccccCChhhccccCc---------------------------------------------------------
Confidence            99999999999877322110000                                                         


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                         .+.+++              ...-++++||..|.+||+|.+...++.+|||+||||||.|+
T Consensus       235 -------------------~~~~~a--------------~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQml  281 (604)
T KOG0592|consen  235 -------------------VDPNQA--------------SSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQML  281 (604)
T ss_pred             -------------------cCcccc--------------cCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHh
Confidence                               000000              00124789999999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhcc-ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLR-DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      .|   |....+.....+++. ...+|+.|   ++...+|+.++|..||++|+|+.+|.+||||.+..
T Consensus       282 aG~PPFra~NeyliFqkI~~l~y~fp~~f---p~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~~Vd  345 (604)
T KOG0592|consen  282 AGQPPFRAANEYLIFQKIQALDYEFPEGF---PEDARDLIKKLLVRDPSDRLTSQQIKAHPFFEGVD  345 (604)
T ss_pred             cCCCCCccccHHHHHHHHHHhcccCCCCC---CHHHHHHHHHHHccCccccccHHHHhhCcccccCC
Confidence            86   655555444444433 34556666   48889999999999999999999999999998763

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.3e-32  Score=298.21  Aligned_cols=287  Identities=18%  Similarity=0.284  Sum_probs=245.4

Q ss_pred             CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCC-CCcc--cccc----eeeecCCCCeEEEEEecCCCCEEEEEE
Q 001366          777 NSANVICSISFDRDED-HFAAAGVSKKIKIFEFNALFN-DSVD--VYYP----AVEMSNRSKLSCVCWNNYIKNYLASAD  848 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~-~latgg~D~~I~Iwd~~~~~~-~~~~--~~~~----~~~~~h~~~V~~v~~sp~~~~~LaSgs  848 (1092)
                      .|..+|++++|+|-.. .+|+|+.|-+.++|++..... ....  ...+    .........|++++|+.+ |..||+|+
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~LatG~  254 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLLATGS  254 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeEEEee
Confidence            4999999999999766 999999999999999874111 0110  0000    011123467999999998 99999999


Q ss_pred             CCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCce-EEEEEccCCCe
Q 001366          849 YDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANV-CCVQFSAHSSH  927 (1092)
Q Consensus       849 ~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V-~sl~fsp~~~~  927 (1092)
                      +||.++||+. .|..+.+|..|.++|.++.|+. ++++|++++-|+++.+||..++...+.+...+.. ..|.|-.+.  
T Consensus       255 ~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--  330 (524)
T KOG0273|consen  255 EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--  330 (524)
T ss_pred             cCcEEEEEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc--
Confidence            9999999996 6778889999999999999999 8999999999999999999999998888854444 778888765  


Q ss_pred             EEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCC
Q 001366          928 LLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHT 1006 (1092)
Q Consensus       928 ~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~ 1006 (1092)
                      -|++.+.|+.|+|+-+... .|+.++.+|.+.|.++.|. .+..|+|+|.|++++||...        ...+...+.+|.
T Consensus       331 ~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~--------~~~~~~~l~~Hs  401 (524)
T KOG0273|consen  331 EFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG--------QSNSVHDLQAHS  401 (524)
T ss_pred             eEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC--------CCcchhhhhhhc
Confidence            5999999999999998754 4788999999999999998 57789999999999999987        356678889999


Q ss_pred             CCeEEEEEecCC---------CEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEE
Q 001366         1007 NEKNFVGLSTAD---------GYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMV 1077 (1092)
Q Consensus      1007 ~~V~~v~~spdg---------~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~L 1077 (1092)
                      ..|+.+.|+|+|         ..+++++.|++|++||+..+.++.++              ..|..+|++|+|+|+|++|
T Consensus       402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f--------------~kH~~pVysvafS~~g~yl  467 (524)
T KOG0273|consen  402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL--------------MKHQEPVYSVAFSPNGRYL  467 (524)
T ss_pred             cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee--------------ccCCCceEEEEecCCCcEE
Confidence            999999999974         47999999999999999999988764              5789999999999999999


Q ss_pred             EEEecCCeEEEEEc
Q 001366         1078 VAANSSGCIKVLQM 1091 (1092)
Q Consensus      1078 asgs~DG~V~vW~l 1091 (1092)
                      |+|+.||.|.+|..
T Consensus       468 AsGs~dg~V~iws~  481 (524)
T KOG0273|consen  468 ASGSLDGCVHIWST  481 (524)
T ss_pred             EecCCCCeeEeccc
Confidence            99999999999974

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.1e-32  Score=288.87  Aligned_cols=321  Identities=21%  Similarity=0.313  Sum_probs=269.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccc-CCCCCc-------ccc-ccchhhhccchhhhhhccccccCCCCcEE--eEcCCeE
Q 001366          688 NEMRLMRNLNQLERAYFSMRSQIQ-LSDSDS-------TTR-ADNDLLRDRENLFLAQQDQEIQNPTDRLG--AFFDGLC  756 (1092)
Q Consensus       688 ~~~rl~~~~~~l~~~~~~~~~~~~-~~~~~~-------~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~--~~~D~~~  756 (1092)
                      ..-||.+.+..|+..+......+. ..++.+       .++ +..+.+.++...+..+    ..+|...+.  ++.|.++
T Consensus        57 Sv~rlqKki~~Les~l~~~~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v----~~hp~~~~v~~as~d~ti  132 (406)
T KOG0295|consen   57 SVDRLQKKIRELESKLDETGDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRV----IFHPSEALVVSASEDATI  132 (406)
T ss_pred             ccchhHHHHHHHHhhhcccccccccCCCCcCccChhhcCCCCCchhhhhccccceeee----eeccCceEEEEecCCceE
Confidence            447788888888887776554421 111111       122 3345555665555443    246766664  4569999


Q ss_pred             EEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEE
Q 001366          757 KYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCW  836 (1092)
Q Consensus       757 k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  836 (1092)
                      ++|++.+++...     .+++|.+.|.+|+|+..|+++|+++.|-.+++||+..      ...+.....+|...|.+++|
T Consensus       133 kv~D~~tg~~e~-----~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~------~~~c~ks~~gh~h~vS~V~f  201 (406)
T KOG0295|consen  133 KVFDTETGELER-----SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT------FFRCIKSLIGHEHGVSSVFF  201 (406)
T ss_pred             EEEEccchhhhh-----hhhccccceeEEEEecCccEEEecCCccchhheeHHH------HHHHHHHhcCcccceeeEEE
Confidence            999998877744     4669999999999999999999999999999999875      13344556789999999999


Q ss_pred             ecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCc
Q 001366          837 NNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIAN  915 (1092)
Q Consensus       837 sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~  915 (1092)
                      -|. +++|+|++.|.+|+.|++.+|-++.+|.+|...|..++.+. |+.++|+||.|.+|++|-+.++.|...+. |.-.
T Consensus       202 ~P~-gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~  279 (406)
T KOG0295|consen  202 LPL-GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHP  279 (406)
T ss_pred             Eec-CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence            998 89999999999999999999999999999999999999999 99999999999999999999998888887 6778


Q ss_pred             eEEEEEccCC--------------CeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeE
Q 001366          916 VCCVQFSAHS--------------SHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKL  980 (1092)
Q Consensus       916 V~sl~fsp~~--------------~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I  980 (1092)
                      |.|++|.|..              ..++.+++.|++|++||+.++. .+.++.+|...|+.++|+ .|++|+|+..|+++
T Consensus       280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktl  358 (406)
T KOG0295|consen  280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTL  358 (406)
T ss_pred             eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEEEEecccceeeeeEEcCCCeEEEEEecCCcE
Confidence            9999998742              2589999999999999999986 578899999999999999 56789999999999


Q ss_pred             EEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          981 KLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       981 ~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      ++||++        ...|..++..|..-|++++|+.+-.|+++|+-|.++++|.
T Consensus       359 rvwdl~--------~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  359 RVWDLK--------NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEEEec--------cceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            999999        5788999999999999999999999999999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.6e-31  Score=272.95  Aligned_cols=291  Identities=23%  Similarity=0.361  Sum_probs=236.8

Q ss_pred             eecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          774 EFNNSANVICSISFDRD-EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspd-g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      .+.+|.+.|..++|+|- |..||+||.|+.|+||+...  .+..... ....-+|+..|..|+|+|. +++||++|+|.+
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~--~~s~~ck-~vld~~hkrsVRsvAwsp~-g~~La~aSFD~t   84 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS--GDSWTCK-TVLDDGHKRSVRSVAWSPH-GRYLASASFDAT   84 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC--CCcEEEE-EeccccchheeeeeeecCC-CcEEEEeeccce
Confidence            46789999999999998 99999999999999999874  1111111 1222369999999999998 889999999999


Q ss_pred             EEEEECCCC--ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC---ceeeeEe-cCCceEEEEEccCCC
Q 001366          853 VKLWDACTG--QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK---NSLATIK-NIANVCCVQFSAHSS  926 (1092)
Q Consensus       853 V~IWD~~tg--~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~---~~l~~l~-~~~~V~sl~fsp~~~  926 (1092)
                      +.||.-..+  +++.++.||...|.|++|++ ++++||+||.|++|-||.+..+   .++..++ |...|--+.|+|...
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED  163 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence            999986644  68999999999999999999 9999999999999999999854   4566666 678899999999875


Q ss_pred             eEEEEEECCCeEEEEEcCCC--CcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc
Q 001366          927 HLLAFGSADYRTYCYDLRNA--RAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS 1003 (1092)
Q Consensus       927 ~~latgs~Dg~I~vwDlr~~--~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~ 1003 (1092)
                       +|++++.|.+|++|+-...  -....++.+|...|.+++|. .+..|++++.|++++||-....            .-.
T Consensus       164 -lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------------~~~  230 (312)
T KOG0645|consen  164 -LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------------LSG  230 (312)
T ss_pred             -eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC------------cch
Confidence             9999999999999987632  23567899999999999999 4779999999999999986521            112


Q ss_pred             CCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCC-CCEEEEEec
Q 001366         1004 GHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRR-SDMVVAANS 1082 (1092)
Q Consensus      1004 ~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd-~~~Lasgs~ 1082 (1092)
                      .|...++.++|.  ...||+++.|+.|++|.....-.-..+.     .+  ......|...|++|+|.|. .+.|++|+.
T Consensus       231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~-----l~--~~~~~aHe~dVNsV~w~p~~~~~L~s~~D  301 (312)
T KOG0645|consen  231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN-----LL--AKKEGAHEVDVNSVQWNPKVSNRLASGGD  301 (312)
T ss_pred             hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH-----HH--HhhhcccccccceEEEcCCCCCceeecCC
Confidence            377889999998  5689999999999999755321000010     00  0123568889999999995 789999999


Q ss_pred             CCeEEEEEc
Q 001366         1083 SGCIKVLQM 1091 (1092)
Q Consensus      1083 DG~V~vW~l 1091 (1092)
                      ||.|++|.+
T Consensus       302 DG~v~~W~l  310 (312)
T KOG0645|consen  302 DGIVNFWEL  310 (312)
T ss_pred             CceEEEEEe
Confidence            999999986

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-34  Score=309.96  Aligned_cols=254  Identities=20%  Similarity=0.249  Sum_probs=195.3

Q ss_pred             CCchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecC
Q 001366          209 SGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSN  284 (1092)
Q Consensus       209 ~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (1092)
                      .+...|.+.+.++  +.|.||+-+..|    ++...|-|+..-..+  ....+-..++..++...+||.|+.+.-+.+..
T Consensus        22 ~~~~dF~~lkviGkG~fGkV~~Vrk~d----t~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~   97 (357)
T KOG0598|consen   22 VGPDDFEILKVIGKGSFGKVFQVRKKD----TGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTE   97 (357)
T ss_pred             CChhheeeeeeeeccCCceEEEEEEcc----cCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccC
Confidence            3455666655543  678888877643    233333333211111  12344456666778889999999988887766


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                      .-+++                +++|+.||.|+-.|++.+. +++..++.|+..|+.||.|||++|||||||||+||||+.
T Consensus        98 ~kLyl----------------Vld~~~GGeLf~hL~~eg~-F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~  160 (357)
T KOG0598|consen   98 EKLYL----------------VLDYLNGGELFYHLQREGR-FSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDE  160 (357)
T ss_pred             CeEEE----------------EEeccCCccHHHHHHhcCC-cchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecC
Confidence            66653                8999999999999988775 555589999999999999999999999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      .|+++|+||||++.....+                                                             
T Consensus       161 ~GHi~LtDFgL~k~~~~~~-------------------------------------------------------------  179 (357)
T KOG0598|consen  161 QGHIKLTDFGLCKEDLKDG-------------------------------------------------------------  179 (357)
T ss_pred             CCcEEEeccccchhcccCC-------------------------------------------------------------
Confidence            9999999999998744100                                                             


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~e  524 (1092)
                                                                ..-.+.|||+.|||||++.+..|+..+|+|||||++||
T Consensus       180 ------------------------------------------~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYe  217 (357)
T KOG0598|consen  180 ------------------------------------------DATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYE  217 (357)
T ss_pred             ------------------------------------------CccccccCCccccChHHHhcCCCCcccchHhHHHHHHH
Confidence                                                      00115799999999999999999999999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhcccc-CCCCCCCCCChhHHHHHHhccccCCCCCC----CHHHHhhhhhhhhh
Q 001366          525 LFGR---FDSERALAAAMSDLRDR-ILPPSFLSENPKEAGFCLWQLHPEPLSRP----TTREILQSEVTNEF  588 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~li~~lL~~dP~~Rp----sa~eiL~~~~~~~~  588 (1092)
                      ||+|   |.........-+.++.+ +.+|.++  +++.++|+.++|..||.+|.    .+.+|-.||||...
T Consensus       218 ML~G~pPF~~~~~~~~~~~I~~~k~~~~p~~l--s~~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~i  287 (357)
T KOG0598|consen  218 MLTGKPPFYAEDVKKMYDKILKGKLPLPPGYL--SEEARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKGI  287 (357)
T ss_pred             HhhCCCCCcCccHHHHHHHHhcCcCCCCCccC--CHHHHHHHHHHhccCHHHhcCCCCChHHhhcCcccccC
Confidence            9986   66555555555555555 4444433  78999999999999999995    68999999999864

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-33  Score=313.05  Aligned_cols=251  Identities=19%  Similarity=0.160  Sum_probs=187.3

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +..|.||.+...+.    +...+.|...-.+... ...--++.+++...+||||+..+..-.....              
T Consensus        28 Gs~G~V~l~~~~~~----g~~~AvK~v~~~~~~~-~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~--------------   88 (313)
T KOG0198|consen   28 GSFGSVYLATNKKT----GELMAVKSVELEDSPT-SESLEREIRILSRLNHPNIVQYYGSSSSREN--------------   88 (313)
T ss_pred             ccceEEEEEEecCC----Ccceeeeeeecccchh-HHHHHHHHHHHHhCCCCCEEeeCCccccccC--------------
Confidence            34799999998552    3334443332221111 3334667778888899999964332111110              


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc-CCcEEEecccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ-SNQVKYIGPIIQKET  379 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~-~~~vkl~Dfg~~~~~  379 (1092)
                      .-.+++|||+.||+|.++++..+..+++..++.+.+||++||.|||++|||||||||+|||+++ ++.+||+|||+++..
T Consensus        89 ~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~  168 (313)
T KOG0198|consen   89 DEYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKL  168 (313)
T ss_pred             eeeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCcccccc
Confidence            0124589999999999999887657888899999999999999999999999999999999999 699999999998775


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      .....                                                                           
T Consensus       169 ~~~~~---------------------------------------------------------------------------  173 (313)
T KOG0198|consen  169 ESKGT---------------------------------------------------------------------------  173 (313)
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            41000                                                                           


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC-CCccccchhhhHHHHHHcCCCCcHHH----
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV-CTTSSNIYSLGVLFFELFGRFDSERA----  534 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~-~t~~sDIwSLGvll~ell~~f~~~~~----  534 (1092)
                                               .........||+.|||||++.++. ..+++|||||||++.||+|+-.++..    
T Consensus       174 -------------------------~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~  228 (313)
T KOG0198|consen  174 -------------------------KSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEE  228 (313)
T ss_pred             -------------------------cccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcch
Confidence                                     000111568999999999999633 34699999999999999998555544    


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      .............|+.....+++..+|+.+||..+|..||||.++|+|||......
T Consensus       229 ~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~~~~  284 (313)
T KOG0198|consen  229 AEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQNSI  284 (313)
T ss_pred             HHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhChhhhcccc
Confidence            34445555555666666667899999999999999999999999999999987544

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=306.83  Aligned_cols=264  Identities=17%  Similarity=0.211  Sum_probs=195.2

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCcccccccccccc-ccccccCchhhHhhhhhhhhhccCCCCC-CCccccceecCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTK-AFVTTTMPSDAALKAAGAMMVASNASPK-PVGVGTAVVSNGS  286 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  286 (1092)
                      +..|.....++  -.|+||+|..    +..++.++.| |.........-..+++++.++...+|+| |+.+.+....+..
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~----~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~   85 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARS----KRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNN   85 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEE----ecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccc
Confidence            33344443344  3799999997    4445555553 3322222233456788999999999999 8876666544332


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                      +.   ..+.-+       .++|| ..-+|..++....   ..++...++.+++||+.||+|||++||+||||||.||||+
T Consensus        86 ~~---~~~~l~-------lvfe~-~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~  154 (323)
T KOG0594|consen   86 HR---GIGKLY-------LVFEF-LDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLIS  154 (323)
T ss_pred             cc---ccceEE-------EEEEe-ecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEEC
Confidence            11   111111       13444 4579999998765   3466678999999999999999999999999999999999


Q ss_pred             cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCc
Q 001366          364 QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANE  443 (1092)
Q Consensus       364 ~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1092)
                      ++|.+|++|||+|+...                                                               
T Consensus       155 ~~G~lKlaDFGlAra~~---------------------------------------------------------------  171 (323)
T KOG0594|consen  155 SSGVLKLADFGLARAFS---------------------------------------------------------------  171 (323)
T ss_pred             CCCcEeeeccchHHHhc---------------------------------------------------------------
Confidence            99999999999998543                                                               


Q ss_pred             cccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHH
Q 001366          444 SDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLF  522 (1092)
Q Consensus       444 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll  522 (1092)
                                                              .+...++..++|.||+|||++.|. .|+..+||||+|||+
T Consensus       172 ----------------------------------------ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIf  211 (323)
T KOG0594|consen  172 ----------------------------------------IPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIF  211 (323)
T ss_pred             ----------------------------------------CCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHH
Confidence                                                    122334577899999999999995 799999999999999


Q ss_pred             HHHcCC---CCcHHHHHHHHHhccccCCCC----------------------------CCCCCChhHHHHHHhccccCCC
Q 001366          523 FELFGR---FDSERALAAAMSDLRDRILPP----------------------------SFLSENPKEAGFCLWQLHPEPL  571 (1092)
Q Consensus       523 ~ell~~---f~~~~~~~~~~~~~~~~~~p~----------------------------~~~~~~~~~~~li~~lL~~dP~  571 (1092)
                      +||+++   |++..+..+...+.+-.-.|.                            ..+...+...+++.+||+++|.
T Consensus       212 aEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~  291 (323)
T KOG0594|consen  212 AEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPA  291 (323)
T ss_pred             HHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcc
Confidence            999985   888888777766654321110                            0122335778999999999999


Q ss_pred             CCCCHHHHhhhhhhhhhhccc
Q 001366          572 SRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       572 ~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                      +|.||..+|.||||.+.....
T Consensus       292 ~R~Sa~~al~h~yf~~~~~~~  312 (323)
T KOG0594|consen  292 KRISAKGALTHPYFSELPEKS  312 (323)
T ss_pred             cCcCHHHHhcChhhcccccch
Confidence            999999999999998875443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.7e-31  Score=268.11  Aligned_cols=276  Identities=17%  Similarity=0.288  Sum_probs=238.5

Q ss_pred             cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeec
Q 001366          747 RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       747 ~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~  826 (1092)
                      ..++++|-+|+||......+.+++.     +..+.|+.+.+.|++..||+|+. ..|++||+.+...     .......+
T Consensus        13 LvsA~YDhTIRfWqa~tG~C~rTiq-----h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-----~Pv~t~e~   81 (311)
T KOG0315|consen   13 LVSAGYDHTIRFWQALTGICSRTIQ-----HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-----NPVATFEG   81 (311)
T ss_pred             EEeccCcceeeeeehhcCeEEEEEe-----cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-----CceeEEec
Confidence            3578999999999999888887665     56778999999999999999985 4899999986321     22334567


Q ss_pred             CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce
Q 001366          827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS  906 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~  906 (1092)
                      |...|+.|.|..+ +.+++|||.||+++|||++.-.+-+.|. |..+|++|..+| +...|++|..+|.|++||+....+
T Consensus        82 h~kNVtaVgF~~d-grWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   82 HTKNVTAVGFQCD-GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             cCCceEEEEEeec-CeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCcc
Confidence            8999999999998 9999999999999999999877777775 779999999999 788899999999999999998877


Q ss_pred             eeeEe--cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCC-----cceEEecCCCCCeEEEEEc-CCCEEEEEECCC
Q 001366          907 LATIK--NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNAR-----APWCVLAGHEKAVSYVKFL-DSGTLVTASTDN  978 (1092)
Q Consensus       907 l~~l~--~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~-----~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg  978 (1092)
                      .+.+-  ....|.++...|+|+ +++++...|..++|++-+..     .|+..++.|...+..+.++ ++++|+++|.|.
T Consensus       159 ~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk  237 (311)
T KOG0315|consen  159 THELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK  237 (311)
T ss_pred             ccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc
Confidence            77665  346799999999996 88889999999999987532     2567789999999999999 778999999999


Q ss_pred             eEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeee
Q 001366          979 KLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSY 1044 (1092)
Q Consensus       979 ~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~ 1044 (1092)
                      +++||++.+.       ......+.+|..+++.++||.||.||++||.|+.+++|+...++.+...
T Consensus       238 tv~iwn~~~~-------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy  296 (311)
T KOG0315|consen  238 TVKIWNTDDF-------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY  296 (311)
T ss_pred             eEEEEecCCc-------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence            9999999842       2455678899999999999999999999999999999999998877654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-30  Score=288.97  Aligned_cols=332  Identities=20%  Similarity=0.253  Sum_probs=258.6

Q ss_pred             hhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 001366          726 LRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKI  805 (1092)
Q Consensus       726 l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~I  805 (1092)
                      +.+|...+.+..+ .-..|-..++++-|+++.|++-.-|+...+     ++.|+.-|.|+.|+|||++|||+|.|++|.|
T Consensus       143 i~GhSr~ins~~~-KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s-----~r~HskFV~~VRysPDG~~Fat~gsDgki~i  216 (603)
T KOG0318|consen  143 ITGHSRRINSVDF-KPSRPFRIATGSDDNTVAFFEGPPFKFKSS-----FREHSKFVNCVRYSPDGSRFATAGSDGKIYI  216 (603)
T ss_pred             eeccceeEeeeec-cCCCceEEEeccCCCeEEEeeCCCeeeeec-----ccccccceeeEEECCCCCeEEEecCCccEEE
Confidence            3444444444332 123555667888999999988776665543     4579999999999999999999999999999


Q ss_pred             EEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceE---------------------
Q 001366          806 FEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTV---------------------  864 (1092)
Q Consensus       806 wd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i---------------------  864 (1092)
                      ||=.+..   . .........|++.|.+++|+|| +..++|+|.|.+++|||+.+.+++                     
T Consensus       217 yDGktge---~-vg~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd  291 (603)
T KOG0318|consen  217 YDGKTGE---K-VGELEDSDAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD  291 (603)
T ss_pred             EcCCCcc---E-EEEecCCCCccccEEEEEECCC-CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence            9965421   0 0111113469999999999999 999999999999999999765332                     


Q ss_pred             ----------------------EEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCcee---------------
Q 001366          865 ----------------------SHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSL---------------  907 (1092)
Q Consensus       865 ----------------------~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l---------------  907 (1092)
                                            ..+.+|.+.|+++..+| +++.|+||+.||.|.-||+.++..-               
T Consensus       292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~  370 (603)
T KOG0318|consen  292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA  370 (603)
T ss_pred             eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence                                  23346999999999999 8899999999999999998753210               


Q ss_pred             ----------------eeE------------------------------------------e---------cCCceEEEE
Q 001366          908 ----------------ATI------------------------------------------K---------NIANVCCVQ  920 (1092)
Q Consensus       908 ----------------~~l------------------------------------------~---------~~~~V~sl~  920 (1092)
                                      +.+                                          +         ..-...+++
T Consensus       371 ~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA  450 (603)
T KOG0318|consen  371 ASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA  450 (603)
T ss_pred             ecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence                            000                                          0         001135888


Q ss_pred             EccCCCeEEEEEECCCeEEEEEcCCCC-cceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCce
Q 001366          921 FSAHSSHLLAFGSADYRTYCYDLRNAR-APWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNAC  998 (1092)
Q Consensus       921 fsp~~~~~latgs~Dg~I~vwDlr~~~-~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~  998 (1092)
                      ++|++. .+++|+.|+.|++|.+.... .....+..|..+|++|+|+ ++.+|++|...+.+.+||+.+...       .
T Consensus       451 v~~~~~-~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-------~  522 (603)
T KOG0318|consen  451 VSPDGS-EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-------K  522 (603)
T ss_pred             EcCCCC-EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-------e
Confidence            999985 89999999999999998754 3445677899999999999 677899999999999999985321       1


Q ss_pred             eEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEE
Q 001366          999 SLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVV 1078 (1092)
Q Consensus       999 ~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~La 1078 (1092)
                      .....-|+..|++++|+|+..++|+||.|-.|.||++..+.....++             ..|...|+.+.|- +...|+
T Consensus       523 ~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik-------------nAH~~gVn~v~wl-de~tvv  588 (603)
T KOG0318|consen  523 TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK-------------NAHLGGVNSVAWL-DESTVV  588 (603)
T ss_pred             cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-------------cccccCceeEEEe-cCceEE
Confidence            22334499999999999999999999999999999998776553333             5677779999998 556788


Q ss_pred             EEecCCeEEEEEc
Q 001366         1079 AANSSGCIKVLQM 1091 (1092)
Q Consensus      1079 sgs~DG~V~vW~l 1091 (1092)
                      ++|.|..||+|.+
T Consensus       589 SsG~Da~iK~W~v  601 (603)
T KOG0318|consen  589 SSGQDANIKVWNV  601 (603)
T ss_pred             eccCcceeEEecc
Confidence            9999999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2e-30  Score=283.88  Aligned_cols=284  Identities=25%  Similarity=0.390  Sum_probs=245.6

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|..+|++++|+|++++|++++.|+.|++|++....       .......|...+.++.|+++ ++.|++++.||.|
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i   75 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTI   75 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCC-CCEEEEEcCCCeE
Confidence            356899999999999999999999999999999987521       22334567888999999998 6899999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      ++||+.+++.+..+..|...+.++.|++ ++.++++++.|+.|++||+++++....+. +...+.+++|+|++ .+++++
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~  153 (289)
T cd00200          76 RLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG-TFVASS  153 (289)
T ss_pred             EEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC-CEEEEE
Confidence            9999999888888999999999999999 67888888889999999999888888887 66789999999996 478888


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC-CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD-SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~-~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~ 1011 (1092)
                      +.|+.|++||+++.+ ....+..|...|.++.|++ +..+++++.|+.|++||++.        ...+..+..|...+.+
T Consensus       154 ~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~--------~~~~~~~~~~~~~i~~  224 (289)
T cd00200         154 SQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST--------GKCLGTLRGHENGVNS  224 (289)
T ss_pred             cCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC--------CceecchhhcCCceEE
Confidence            889999999998765 3566778998999999994 45888999999999999983        4556667688889999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1012 v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      +.|+|++.++++++.|+.|++|+...+.++..+.              .|...|.+++|+|++..|++++.||.|++|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--------------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--------------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999998899998889999999998766655432              4567899999999999999999999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-30  Score=297.69  Aligned_cols=319  Identities=19%  Similarity=0.357  Sum_probs=269.3

Q ss_pred             EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCCCCcccccceeeec
Q 001366          748 LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS-KKIKIFEFNALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       748 l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D-~~I~Iwd~~~~~~~~~~~~~~~~~~~  826 (1092)
                      ..+|..|...+.++..+.+...+..     ...+|..++|+..|+.||.|+.. |.+-||++..       -.+.....+
T Consensus       281 vvgFssG~f~LyelP~f~lih~LSi-----s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-------EsYVlKQQg  348 (893)
T KOG0291|consen  281 VVGFSSGEFGLYELPDFNLIHSLSI-----SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-------ESYVLKQQG  348 (893)
T ss_pred             EEEecCCeeEEEecCCceEEEEeec-----ccceeeEEEecccCCEEEEcCCccceEEEEEeec-------cceeeeccc
Confidence            4567778888999988887765553     45689999999999999998855 7899999976       245556678


Q ss_pred             CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce
Q 001366          827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS  906 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~  906 (1092)
                      |-..++|++++|| ++++|||+.||.|+|||..+|-|+.+|..|+..|+.+.|+. .++.+++.|.||+|+.||+...++
T Consensus       349 H~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  349 HSDRITSLAYSPD-GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             cccceeeEEECCC-CcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccce
Confidence            9999999999998 99999999999999999999999999999999999999999 899999999999999999999999


Q ss_pred             eeeEecCC--ceEEEEEccCCCeEEEEEECCC-eEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEE
Q 001366          907 LATIKNIA--NVCCVQFSAHSSHLLAFGSADY-RTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKL  982 (1092)
Q Consensus       907 l~~l~~~~--~V~sl~fsp~~~~~latgs~Dg-~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~v  982 (1092)
                      .+++..+.  ...|++..|.|. ++.+|+.|. .|++|++.+++ .+.++.||.++|.+++|+ .+..|+|+|.|++|++
T Consensus       427 fRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi  504 (893)
T KOG0291|consen  427 FRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI  504 (893)
T ss_pred             eeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence            99998655  468999999996 777777775 69999999986 578999999999999998 7779999999999999


Q ss_pred             EEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCcccc----
Q 001366          983 WDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETD---- 1058 (1092)
Q Consensus       983 WDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~---- 1058 (1092)
                      ||+-..       ...+.++ .+...+..++|+|+|+-||.+..||.|.+||...+..+.++. |.-+...++...    
T Consensus       505 W~if~s-------~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id-grkD~~~gR~~~D~~t  575 (893)
T KOG0291|consen  505 WDIFSS-------SGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID-GRKDLSGGRKETDRIT  575 (893)
T ss_pred             EEeecc-------CceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc-chhhccccccccceee
Confidence            999732       2233344 356778999999999999999999999999998887776654 222333333211    


Q ss_pred             ---CCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1059 ---DDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1059 ---~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                         ...+.+.+.+|+++||..+++||....|++|++
T Consensus       576 a~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  576 AENSAKGKTFTTICYSADGKCILAGGESNSICIYDV  611 (893)
T ss_pred             hhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence               123467999999999999999999999999986

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.4e-34  Score=320.38  Aligned_cols=463  Identities=19%  Similarity=0.176  Sum_probs=324.2

Q ss_pred             cccccc-cceecccccCCcccccccccccCCcccccccccccccccCCCCCCCchhhhhhcccCcc-CccccCCCCCCCC
Q 001366            4 MDEGVG-EVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQILADMLEGKS-VNRIVSPMDASEN   81 (1092)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   81 (1092)
                      |+++.+ ++.++|.+...|+|.|..|.|+++ +...++.-.++.+.++          ++-.+++. +-|   -..+...
T Consensus         1 ~~~~~~~~~~~~e~~~~~q~~ik~~e~s~~~-~~~~~~~~~~~~~sr~----------a~~~e~~~~~~~---~g~~~~~   66 (516)
T KOG1033|consen    1 RNQEPVMERQRIERVATVQTQIKAREDSFPA-NKSKVRHNKRVITSRE----------ANDFEPGQCLGR---GGFGVVF   66 (516)
T ss_pred             CCCCCCCCcCccccceeeeeeeccccccccc-cccchhhhhhhhhhhh----------hccccccccccc---cCccccC
Confidence            577788 999999999999999999999997 6777777777775544          22111111 111   1112333


Q ss_pred             CCCCCCCCcCceEEEEeecccCCCcceeeeccCcccccccc-cccccceeeccCCCCCCCCCCCCCCCccccccccccCC
Q 001366           82 PCPHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERISTR-HDRWQHLYQLGSGSGSGSSRGDRGHGRTMLGAWEDVGD  160 (1092)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (1092)
                      +.+..+++.+..|++|||+||..++..+++...+..+-..- ..+..|.|..+.+.+..-.+......+......++++.
T Consensus        67 ~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~~~~~~~~qe~~d~~~l~~~~~~~~~~l~s  146 (516)
T KOG1033|consen   67 SAQNKADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWYERPPLGWQEEMDLKLLDDETSSERSNLPS  146 (516)
T ss_pred             CccccccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheeceecCCCCcccchhhhhhhhccCCcchhcccc
Confidence            44677888899999999999999999988877776554444 56677778877777655444333445556666777777


Q ss_pred             CCcccccc-cccccccchhHhhhcccccccCCcCCccccCcceeeecccCCchhHHHhhhccccceeeeCCCCCcccccc
Q 001366          161 TSLHDFIT-QKPLNDEHNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKERR  239 (1092)
Q Consensus       161 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~g~Gvv~~g~~~~~~~~~~  239 (1092)
                      .++++.-. +..+.-......+++...+..+++.++..|.+..+++++..+++.+...+++.||+.-..++.........
T Consensus       147 l~~~~~~~~q~~~~~~~~~A~e~s~~~~~~~v~~~~~s~s~~~~~s~s~~~~~~~~~rk~s~~k~~~~~~~~~tdsd~~e  226 (516)
T KOG1033|consen  147 LSERRTSKRQTAELPRVSAAAESSFHVFRAIVPVENQSHSQESSSSISQHNGSRSEFRKTSVSKASRFEGPDCTDSDLEE  226 (516)
T ss_pred             ccchhccchhhhhcccccccchhhhccccccCchhhcccCcccccchhhcccchhhhhhhhhccccccCCCccccccccc
Confidence            77776655 33334455566677777888889999999999999999999999999999999999999888755444311


Q ss_pred             ccccc--------------------------cccccccCchh---hHhhhhhhhhhcc-C----CCCCCCccccceecCC
Q 001366          240 GMIDT--------------------------KAFVTTTMPSD---AALKAAGAMMVAS-N----ASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       240 ~~~~~--------------------------~~~~~~~~~~~---~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~  285 (1092)
                      ...+.                          .++....+..+   ..+......-+.. .    ....+..+.+...++.
T Consensus       227 d~~~~~~s~~~~~~~~~~s~~~~k~~~~~~~~~~~~~q~~~~~s~~E~~~s~~~~~d~~~~~~~~~r~~~~l~~~~~~~~  306 (516)
T KOG1033|consen  227 DEMQGSDSKESSRHEESGSSSISKSSERVSSGIVFEKQGKNNSSLREWLKSKRADVDSLCACKYTFRQLGVLVDSSHSNR  306 (516)
T ss_pred             cccccCcccCcccccccccccccccccccccCCchhhhhcccchhhhhccchhhhccchhhhhhhhhhhhheeccccCCc
Confidence            11111                          00000000000   0000000000000 0    0001111111111111


Q ss_pred             CCC-----------CCccCCCCCccccCCCcccccCCCCCHHHHHh--hcCCCCCHHHHHHHHHHHHHHHHHhhhcCccc
Q 001366          286 SLD-----------LGARTGVPASCWIGGLRQGSSDHGVNLREWLN--ARGHKGKRIECLYIFRQIVALVDYHHTQGVTF  352 (1092)
Q Consensus       286 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~--~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvH  352 (1092)
                      ...           ..+.++- +.   -..+.|..|+-.+|.+||+  ..+...+....+.+|+|+..+|+|   +|.+|
T Consensus       307 s~~~d~~~s~~~~~~~~~v~~-~~---~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~~ih  379 (516)
T KOG1033|consen  307 SILEDLRPSLFESSKRNKVGK-KV---YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KGLIH  379 (516)
T ss_pred             ccccCCCCchhhhcccccccc-cc---chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---ccchh
Confidence            110           0000110 00   1345799999999999995  445567888999999999999999   99999


Q ss_pred             cCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccC
Q 001366          353 LDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPS  432 (1092)
Q Consensus       353 rDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (1092)
                      |||||.||+...+.++||.|||+......-.                                                 
T Consensus       380 rdlkp~nif~~~d~q~kIgDFgl~ts~~~~~-------------------------------------------------  410 (516)
T KOG1033|consen  380 RDLKPSNIFFSDDDQLKIGDFGLVTSQDKDE-------------------------------------------------  410 (516)
T ss_pred             hhccccccccccchhhhhhhhhheeecccCC-------------------------------------------------
Confidence            9999999999999999999999875533100                                                 


Q ss_pred             ccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCcc
Q 001366          433 KYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTS  512 (1092)
Q Consensus       433 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~  512 (1092)
                                                                      +........+..+||+|||+||+|.+..|+.+
T Consensus       411 ------------------------------------------------~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~k  442 (516)
T KOG1033|consen  411 ------------------------------------------------TVAPAAASHTQQVGTLLYMSPEQIRGQQYSEK  442 (516)
T ss_pred             ------------------------------------------------cccchhhhhhhcccccccCCHHHHhhhhhhhh
Confidence                                                            00112233457899999999999999999999


Q ss_pred             ccchhhhHHHHHHcCCCCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          513 SNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       513 sDIwSLGvll~ell~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      +||||||+|||||+..|.+..+....+.+++++++||.+....|.+..||++||++.|.+||++.+.--|+|
T Consensus       443 vdIyaLGlil~EL~~~f~T~~er~~t~~d~r~g~ip~~~~~d~p~e~~ll~~lls~~p~~RP~~~~~~~~~~  514 (516)
T KOG1033|consen  443 VDIYALGLILAELLIQFSTQFERIATLTDIRDGIIPPEFLQDYPEEYTLLQQLLSPSPEERPSAIEVALHEF  514 (516)
T ss_pred             cchhhHHHHHHHHHHHhccHHHHHHhhhhhhcCCCChHHhhcCcHHHHHHHHhcCCCcccCchHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999997766555554

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-33  Score=319.76  Aligned_cols=254  Identities=15%  Similarity=0.136  Sum_probs=199.1

Q ss_pred             cCCchhHHHhhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          208 KSGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       208 ~~~f~~~~~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      ...+-.-+.|-..+-.|.||.+...    ...++++.|.+ ..........-+.+...++..+|+|++..++...+... 
T Consensus       271 P~~~y~~~~kigqgaSG~vy~A~~~----~~~~~VaiK~m-~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~de-  344 (550)
T KOG0578|consen  271 PRSKYTDFKKIGQGATGGVYVARKI----STKQEVAIKRM-DLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDE-  344 (550)
T ss_pred             hhhhhcchhhhccccccceeeeeec----cCCceEEEEEE-EeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccce-
Confidence            3344444566777778999999872    23455555443 11223334556777778889999999987777554422 


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                                     -+++|||++||+|.|.+...  .+++.++..|++++|.||+|||.+||+|||||.+|||++.+|.
T Consensus       345 ---------------LWVVMEym~ggsLTDvVt~~--~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~  407 (550)
T KOG0578|consen  345 ---------------LWVVMEYMEGGSLTDVVTKT--RMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGS  407 (550)
T ss_pred             ---------------eEEEEeecCCCchhhhhhcc--cccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCc
Confidence                           24589999999999999765  5889899999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      |||+|||++..+.+..                                                                
T Consensus       408 vKltDFGFcaqi~~~~----------------------------------------------------------------  423 (550)
T KOG0578|consen  408 VKLTDFGFCAQISEEQ----------------------------------------------------------------  423 (550)
T ss_pred             EEEeeeeeeecccccc----------------------------------------------------------------
Confidence            9999999987755210                                                                


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                             ..-++.+|||+|||||++....|++++||||||++++||+-
T Consensus       424 ---------------------------------------~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMve  464 (550)
T KOG0578|consen  424 ---------------------------------------SKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVE  464 (550)
T ss_pred             ---------------------------------------CccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhc
Confidence                                                   00126799999999999999999999999999999999997


Q ss_pred             C---CCcHHHHHHHHHhccccCCC-CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          528 R---FDSERALAAAMSDLRDRILP-PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      |   |-.+..+.+++.......+. ......++.+++|+.+||+.||.+|++|.|||+||||..
T Consensus       465 GEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~HpFl~~  528 (550)
T KOG0578|consen  465 GEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLEHPFLKM  528 (550)
T ss_pred             CCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhcChhhhh
Confidence            5   44455555555554444332 344567899999999999999999999999999999954

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2e-31  Score=282.81  Aligned_cols=290  Identities=19%  Similarity=0.323  Sum_probs=249.6

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|.+.|.|+++.|..+.|+||+.|++|+|||+.+       ........+|...|..|++++- ..++.+++.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-------g~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~V  217 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-------GQLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQV  217 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-------CeEEEeecchhheeeeeeeccc-CceEEEecCCCee
Confidence            4669999999999999999999999999999999986       2334456679999999999987 7799999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      +-||++..+.++.+-||-..|.|++.+| .-..|++|+.|.+++|||+++...+.++. |...|.+|.+.|.++ .+++|
T Consensus       218 KCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-qvit~  295 (460)
T KOG0285|consen  218 KCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-QVITG  295 (460)
T ss_pred             EEEechhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC-ceEEe
Confidence            9999999999999999999999999999 67899999999999999999999999998 788999999999876 79999


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCE-EEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~-L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~ 1011 (1092)
                      +.|++|++||++.++. ..++..|...|.+++.+|... ++|+|.| .|+-|++.        .+..+..+.+|..-|++
T Consensus       296 S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p--------~g~f~~nlsgh~~iint  365 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLP--------EGEFLQNLSGHNAIINT  365 (460)
T ss_pred             cCCceEEEeeeccCce-eEeeecccceeeEEecCCchhhhhccCCc-cceeccCC--------ccchhhccccccceeee
Confidence            9999999999999875 578889999999999986655 5666655 69999998        35566778999999999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1012 v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      ++...|| ++++|+++|.+.+||..++-..+...     .+..... -.....|.+.||...+..|+||..|.+|++|+
T Consensus       366 l~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~-----t~vqpGS-l~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  366 LSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQ-----TIVQPGS-LESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             eeeccCc-eEEEcCCceEEEEEecCcCccccccc-----ccccCCc-cccccceeEEeecccCceEEeccCCcceEEEe
Confidence            9988776 88899999999999998876554432     0111111 12345699999999999999999999999996

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=3.7e-33  Score=312.56  Aligned_cols=242  Identities=17%  Similarity=0.171  Sum_probs=188.1

Q ss_pred             hccccceeeeCCCCCcccccccccccccc--ccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAF--VTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      ..+.+|+||||++.+    ..+.+|.|..  .+.+.+. ..--.++..+++..+||||+..++..-...           
T Consensus        11 G~Gsfg~VYKgrrK~----t~~~vAik~i~K~gr~~k~-l~~l~~ev~i~r~lkHpniv~m~esfEt~~-----------   74 (808)
T KOG0597|consen   11 GEGSFGRVYKGRRKY----TIQVVAIKFIDKSGRNEKE-LKNLRQEVRILRSLKHPNIVEMLESFETSA-----------   74 (808)
T ss_pred             cCCccceeeeccccc----ceeEEEEEEehhcCCchHH-HHHHHHHHHHHHhcCCcchhhHHHhhcccc-----------
Confidence            445689999999944    3444555432  2222211 122345667899999999998666533211           


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                           +-.++.|||.| +|+.+|...+. +++..++.|..|++.||.|||+.+|+|||+||.||||...+.+|++|||+|
T Consensus        75 -----~~~vVte~a~g-~L~~il~~d~~-lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~A  147 (808)
T KOG0597|consen   75 -----HLWVVTEYAVG-DLFTILEQDGK-LPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLA  147 (808)
T ss_pred             -----eEEEEehhhhh-hHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhh
Confidence                 12358999999 99999988775 555599999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      |.+..                                                                           
T Consensus       148 r~m~~---------------------------------------------------------------------------  152 (808)
T KOG0597|consen  148 RAMST---------------------------------------------------------------------------  152 (808)
T ss_pred             hhccc---------------------------------------------------------------------------
Confidence            87551                                                                           


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCc---HH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDS---ER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~---~~  533 (1092)
                                                  ...-+++.-|||.|||||++.+.+|+..+|+||||||||||+.|-++   ..
T Consensus       153 ----------------------------~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s  204 (808)
T KOG0597|consen  153 ----------------------------NTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS  204 (808)
T ss_pred             ----------------------------CceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH
Confidence                                        01224467899999999999999999999999999999999987443   33


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      -......++.....||.  ..++.+..|+..+|.+||.+|.+..++++|||..+.
T Consensus       205 i~~Lv~~I~~d~v~~p~--~~S~~f~nfl~gLL~kdP~~RltW~~Ll~HpF~k~~  257 (808)
T KOG0597|consen  205 ITQLVKSILKDPVKPPS--TASSSFVNFLQGLLIKDPAQRLTWTDLLGHPFWKGK  257 (808)
T ss_pred             HHHHHHHHhcCCCCCcc--cccHHHHHHHHHHhhcChhhcccHHHHhcChHHhhh
Confidence            33333445555555555  558999999999999999999999999999998764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=4.5e-32  Score=298.61  Aligned_cols=290  Identities=16%  Similarity=0.232  Sum_probs=245.6

Q ss_pred             eeecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC
Q 001366          773 GEFNNSANVICSISFDR-DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG  851 (1092)
Q Consensus       773 ~~l~~h~~~V~sl~fsp-dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg  851 (1092)
                      ..+.+|...|+++.|.| .+.+|++||.|++|+||++..      +..+....++|..+|.+++|+++ +..++|+|+|+
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~------~~~~lrtf~gH~k~Vrd~~~s~~-g~~fLS~sfD~  280 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD------DRRCLRTFKGHRKPVRDASFNNC-GTSFLSASFDR  280 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEec------Ccceehhhhcchhhhhhhhcccc-CCeeeeeecce
Confidence            45789999999999999 899999999999999999875      24555677899999999999998 89999999999


Q ss_pred             cEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEE
Q 001366          852 VVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLA  930 (1092)
Q Consensus       852 tV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~la  930 (1092)
                      .|++||+++|+++..|. -...++|+.|+|++.+.+++|+.|+.|+.||+++++.++.+. |-+.|..+.|-+++. .++
T Consensus       281 ~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~-rFi  358 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR-RFI  358 (503)
T ss_pred             eeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc-eEe
Confidence            99999999999999986 355689999999766999999999999999999999999887 568899999999996 899


Q ss_pred             EEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCe
Q 001366          931 FGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009 (1092)
Q Consensus       931 tgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V 1009 (1092)
                      +.+.|+.++||+.+..-........+.....++..+ ++++++.-+.|+.|.++.+...-     .......+.||...-
T Consensus       359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~-----r~nkkK~feGh~vaG  433 (503)
T KOG0282|consen  359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF-----RLNKKKRFEGHSVAG  433 (503)
T ss_pred             eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc-----ccCHhhhhcceeccC
Confidence            999999999999987654333333444456677776 67789999999999999976321     223345677886654


Q ss_pred             E--EEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCC-CCEEEEEecCCeE
Q 001366         1010 N--FVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRR-SDMVVAANSSGCI 1086 (1092)
Q Consensus      1010 ~--~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd-~~~Lasgs~DG~V 1086 (1092)
                      +  .|.|||||++|++|+.||.+.+||..+.+.+...              ..|++.|..+.|+|. ...||||+.||.|
T Consensus       434 ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l--------------kah~~~ci~v~wHP~e~Skvat~~w~G~I  499 (503)
T KOG0282|consen  434 YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL--------------KAHDQPCIGVDWHPVEPSKVATCGWDGLI  499 (503)
T ss_pred             ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc--------------ccCCcceEEEEecCCCcceeEecccCcee
Confidence            4  4689999999999999999999998877766544              467889999999995 5789999999999


Q ss_pred             EEEE
Q 001366         1087 KVLQ 1090 (1092)
Q Consensus      1087 ~vW~ 1090 (1092)
                      ++|+
T Consensus       500 kiwd  503 (503)
T KOG0282|consen  500 KIWD  503 (503)
T ss_pred             EecC
Confidence            9996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=1.9e-30  Score=309.07  Aligned_cols=285  Identities=25%  Similarity=0.392  Sum_probs=245.1

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      .|...|+++.|+++|+++++++.|+.+++|+......     .......+|...|.+++|+|+ +.++++++.|++|+||
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIW  230 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCC-CcEEEEecCCceEEEe
Confidence            4578999999999999999999999999999854210     112223679999999999998 8899999999999999


Q ss_pred             EC-CCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEEC
Q 001366          857 DA-CTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSA  934 (1092)
Q Consensus       857 D~-~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~  934 (1092)
                      |+ ..+.+++++.+|...|++++|+| .++++++|+.|++|+|||+++++++..+. |...|++++|++++. +|++++.
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~  308 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN-LLVSASY  308 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC-EEEEcCC
Confidence            99 55689999999999999999999 66999999999999999999999999998 677999999999995 8999999


Q ss_pred             CCeEEEEEcCCCCc-ceEEecCCCCC--eEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCe-
Q 001366          935 DYRTYCYDLRNARA-PWCVLAGHEKA--VSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK- 1009 (1092)
Q Consensus       935 Dg~I~vwDlr~~~~-~~~~l~~H~~~--V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V- 1009 (1092)
                      |+.|++||+.++.. +...+.++...  ++++.|+ ++.++++++.|+++++||+.        ...+...+.+|.+.+ 
T Consensus       309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~--------~~~~~~~~~~~~~~~~  380 (456)
T KOG0266|consen  309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR--------SGKSVGTYTGHSNLVR  380 (456)
T ss_pred             CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc--------CCcceeeecccCCcce
Confidence            99999999998874 24566666555  9999998 78899999999999999999        456678888888854 


Q ss_pred             --EEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCC-CCCEEEEEEeCCCCEEEEEe--cCC
Q 001366         1010 --NFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDN-GLFVSSVCWRRRSDMVVAAN--SSG 1084 (1092)
Q Consensus      1010 --~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h-~~~V~sva~spd~~~Lasgs--~DG 1084 (1092)
                        .+...++.+.++++|+.|+.|++|+..++..+...              .+| ...|..++|+|..+++++++  .|+
T Consensus       381 ~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l--------------~~h~~~~~~~~~~~~~~~~~~s~s~~~d~  446 (456)
T KOG0266|consen  381 CIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL--------------EGHSKAAVSDLSSHPTENLIASSSFEGDG  446 (456)
T ss_pred             eEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh--------------cCCCCCceeccccCCCcCeeeecCcCCCc
Confidence              33455778999999999999999999876655543              456 77899999999999999998  789


Q ss_pred             eEEEEEc
Q 001366         1085 CIKVLQM 1091 (1092)
Q Consensus      1085 ~V~vW~l 1091 (1092)
                      .|++|..
T Consensus       447 ~~~~w~~  453 (456)
T KOG0266|consen  447 LIRLWKY  453 (456)
T ss_pred             eEEEecC
Confidence            9999963

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.98  E-value=6.3e-33  Score=312.49  Aligned_cols=302  Identities=14%  Similarity=0.112  Sum_probs=198.2

Q ss_pred             CchhHHHhhh--ccccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCC
Q 001366          210 GFSEFFVKTT--LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       210 ~f~~~~~~~~--~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (1092)
                      +-..|.+.+.  .||.|-||.++..+    +++..|-|+.--..+.  .+..--.++..+|....+|.+|+++-+.....
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~----Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~  214 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKD----TGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKE  214 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEcc----CCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCC
Confidence            3344555544  34789999998844    5566666654222221  12222334445666778999999888888777


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                      .+++                +|||++||++..+|...+. +.+..++.|+.+++.|++.+|+.|+|||||||+|+||+..
T Consensus       215 ~LYL----------------iMEylPGGD~mTLL~~~~~-L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~  277 (550)
T KOG0605|consen  215 YLYL----------------IMEYLPGGDMMTLLMRKDT-LTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAK  277 (550)
T ss_pred             eeEE----------------EEEecCCccHHHHHHhcCc-CchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCC
Confidence            7774                8999999999999988765 5566999999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      |++||+||||+..+......+.-. .++....                  .+.+                     .   .
T Consensus       278 GHiKLSDFGLs~gl~~~~~~~~~~-~~~~~~~------------------~~~~---------------------~---~  314 (550)
T KOG0605|consen  278 GHIKLSDFGLSTGLDKKHRIESYR-LDEQMQI------------------NLSE---------------------A---K  314 (550)
T ss_pred             CCEeeccccccchhhhhhhhhhhc-chhhhhh------------------hhcc---------------------C---C
Confidence            999999999996554211100000 0000000                  0000                     0   0


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                      ..+|.....-..+             ++.....-........-..+.+|||-|||||++.+..|+..+|+||||||+|||
T Consensus       315 ~~~~~~~~~~~~~-------------~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEm  381 (550)
T KOG0605|consen  315 PSDFPKFNTPRST-------------MSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEM  381 (550)
T ss_pred             Cccccccccccch-------------hhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHH
Confidence            0111100000000             000000000001111122368999999999999999999999999999999999


Q ss_pred             cCC---CCcHHHHHHHHHhcccc--CCCCCCCCCChhHHHHHHhccccCCCCCC---CHHHHhhhhhhhhhh
Q 001366          526 FGR---FDSERALAAAMSDLRDR--ILPPSFLSENPKEAGFCLWQLHPEPLSRP---TTREILQSEVTNEFQ  589 (1092)
Q Consensus       526 l~~---f~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~li~~lL~~dP~~Rp---sa~eiL~~~~~~~~~  589 (1092)
                      |.|   |.++.....+-..+.-+  ...|.-...+++..+||.+||+ ||.+|.   ++.||.+||||....
T Consensus       382 LvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~~v~  452 (550)
T KOG0605|consen  382 LVGYPPFCSETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFKGVD  452 (550)
T ss_pred             HhCCCCCCCCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccccCC
Confidence            986   44444444444333322  2234444557889999999999 999996   589999999998764

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.98  E-value=3.4e-32  Score=310.36  Aligned_cols=241  Identities=21%  Similarity=0.208  Sum_probs=188.1

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCC-CCCCCccCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNG-SLDLGARTGV  295 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  295 (1092)
                      ...++.|.||+|....     ...+++|++...+-. .....-.++..++.+.+||||+.++.+..... ..        
T Consensus        49 iG~G~~g~V~~~~~~g-----~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~--------  115 (362)
T KOG0192|consen   49 LGSGSFGTVYKGKWRG-----TDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSL--------  115 (362)
T ss_pred             cccCCceeEEEEEeCC-----ceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCce--------
Confidence            4466899999999843     222677666443322 22345566777888899999998665544222 11        


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcC-ccccCCCCCCeEEccCC-cEEEec
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQG-VTFLDLKPSSFKLLQSN-QVKYIG  372 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~g-IvHrDLKP~Nill~~~~-~vkl~D  372 (1092)
                              .++|||++||+|+++|.. ....++...++.++.||+.|++|||+++ ||||||||+|||++... ++||+|
T Consensus       116 --------~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~D  187 (362)
T KOG0192|consen  116 --------CIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIAD  187 (362)
T ss_pred             --------EEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECC
Confidence                    248999999999999977 4678999899999999999999999999 99999999999999997 999999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||+++......                                                                     
T Consensus       188 FGlsr~~~~~~---------------------------------------------------------------------  198 (362)
T KOG0192|consen  188 FGLSREKVISK---------------------------------------------------------------------  198 (362)
T ss_pred             Cccceeecccc---------------------------------------------------------------------
Confidence            99998754100                                                                     


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc--CCCCCccccchhhhHHHHHHcCC--
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS--GGVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~--~~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                        ...+...||..|||||++.  ...|+.|+||||+|++||||+|+  
T Consensus       199 ----------------------------------~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~  244 (362)
T KOG0192|consen  199 ----------------------------------TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEI  244 (362)
T ss_pred             ----------------------------------ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCC
Confidence                                              1122467999999999999  56899999999999999999985  


Q ss_pred             -CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 -FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       |..................|+......+.+..|+.+||+.||..||++.+|+..
T Consensus       245 Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~  299 (362)
T KOG0192|consen  245 PFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVSR  299 (362)
T ss_pred             CCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHH
Confidence             666666444444444555555455578999999999999999999999998763

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1e-30  Score=293.72  Aligned_cols=282  Identities=22%  Similarity=0.345  Sum_probs=246.2

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      +..++..|.++.|||....++++-.+|.|.||+.++..       .........-+|.+..|-.. .+++++||.|..|+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-------mVksfeV~~~PvRa~kfiaR-knWiv~GsDD~~Ir   80 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-------MVKSFEVSEVPVRAAKFIAR-KNWIVTGSDDMQIR   80 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccce-------eeeeeeecccchhhheeeec-cceEEEecCCceEE
Confidence            45689999999999999999999999999999998621       11122235678888899887 89999999999999


Q ss_pred             EEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC-ceeeeEe-cCCceEEEEEccCCCeEEEEE
Q 001366          855 LWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK-NSLATIK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~-~~l~~l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      ||+..|++.+..|..|.+-|.+++.+|. .-.++|+|+|-+|++||-+.+ .|.+++. |..-|.+++|+|.+.+.||++
T Consensus        81 Vfnynt~ekV~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   81 VFNYNTGEKVKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             EEecccceeeEEeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence            9999999999999999999999999994 457899999999999999865 5677887 556799999999998999999


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCC---EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCe
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSG---TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~---~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V 1009 (1092)
                      +-|++|+||.+.+.. +..++.+|...|.||.|.+++   +|+||+.|.+|+|||..        +..|++++.||++.|
T Consensus       160 sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ--------tk~CV~TLeGHt~Nv  230 (794)
T KOG0276|consen  160 SLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ--------TKSCVQTLEGHTNNV  230 (794)
T ss_pred             eccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc--------hHHHHHHhhcccccc
Confidence            999999999998765 578999999999999998665   99999999999999998        578999999999999


Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEE
Q 001366         1010 NFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088 (1092)
Q Consensus      1010 ~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~v 1088 (1092)
                      +++.|+|.-.+|++||+||+|+||+..+-+...+..+|              ...|++|+-.+.+..++.|...|.|.|
T Consensus       231 s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--------------leRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  231 SFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--------------LERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             eEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--------------CceEEEEeecCCCCeEEEeccCCcEEE
Confidence            99999999999999999999999998776655544432              357999999898888888888887643

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.98  E-value=8.8e-33  Score=299.74  Aligned_cols=247  Identities=17%  Similarity=0.160  Sum_probs=186.8

Q ss_pred             ccccceeeeCCCCCccccccccccc-cccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDT-KAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .|.+|+||+|....    .++.+|. |+...      -..+.++...++...||||+.++-........+        ..
T Consensus        34 ~GsFg~Vyq~~~~e----~~~~vAIKKv~~d------~r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d--------~~   95 (364)
T KOG0658|consen   34 SGSFGVVYQAKLRE----TEEEVAIKKVLQD------KRYKNRELQIMRKLDHPNIVRLLYFFSSSTESD--------EV   95 (364)
T ss_pred             ecccceEEEEEEcC----CCceeEEEEecCC------CCcCcHHHHHHHhcCCcCeeeEEEEEEecCCCc--------hh
Confidence            45689999999843    2455555 33322      235666777788999999998765544332221        11


Q ss_pred             cccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC-CcEEEeccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS-NQVKYIGPI  374 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~-~~vkl~Dfg  374 (1092)
                      |   -+.+|||++ -||.++++.   .+..++..+++-+..||++||.|||+.||+||||||.|+|++++ |.+||+|||
T Consensus        96 ~---lnlVleymP-~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFG  171 (364)
T KOG0658|consen   96 Y---LNLVLEYMP-ETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFG  171 (364)
T ss_pred             H---HHHHHHhch-HHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCC
Confidence            1   234677765 589999974   35567777999999999999999999999999999999999977 999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      .|+.+...                                                                        
T Consensus       172 SAK~L~~~------------------------------------------------------------------------  179 (364)
T KOG0658|consen  172 SAKVLVKG------------------------------------------------------------------------  179 (364)
T ss_pred             cceeeccC------------------------------------------------------------------------
Confidence            99886510                                                                        


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CC
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                      ....+...|+.|+|||++.| ..||.+.||||.||+++||+-|   |+
T Consensus       180 --------------------------------epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFp  227 (364)
T KOG0658|consen  180 --------------------------------EPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFP  227 (364)
T ss_pred             --------------------------------CCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccC
Confidence                                            00016678999999999999 6799999999999999999976   88


Q ss_pred             cHHHHHHHHHhccccC------------------CC-----C----CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          531 SERALAAAMSDLRDRI------------------LP-----P----SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       531 ~~~~~~~~~~~~~~~~------------------~p-----~----~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      +++...++..+++---                  +|     +    .+...+|+..+|+.++|.++|.+|.++.|+|.||
T Consensus       228 G~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~  307 (364)
T KOG0658|consen  228 GDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAHP  307 (364)
T ss_pred             CCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcch
Confidence            8766666543332211                  11     0    1345678899999999999999999999999999


Q ss_pred             hhhhhhccc
Q 001366          584 VTNEFQEVC  592 (1092)
Q Consensus       584 ~~~~~~~~~  592 (1092)
                      ||++.++..
T Consensus       308 fFdelr~~~  316 (364)
T KOG0658|consen  308 FFDELRDPN  316 (364)
T ss_pred             hhHHhhCcC
Confidence            999987763

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.98  E-value=4.5e-32  Score=276.83  Aligned_cols=209  Identities=20%  Similarity=0.174  Sum_probs=171.2

Q ss_pred             hhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHH
Q 001366          259 KAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQI  338 (1092)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qi  338 (1092)
                      --++..+.+..+||||+.+.+.-.....+++                +.++++|++|..-|-.+ ...++..+-++++||
T Consensus        57 l~rEarIC~~LqHP~IvrL~~ti~~~~~~yl----------------vFe~m~G~dl~~eIV~R-~~ySEa~aSH~~rQi  119 (355)
T KOG0033|consen   57 LEREARICRKLQHPNIVRLHDSIQEESFHYL----------------VFDLVTGGELFEDIVAR-EFYSEADASHCIQQI  119 (355)
T ss_pred             HHHHHHHHHhcCCCcEeehhhhhcccceeEE----------------EEecccchHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            3455666788899999998877666666663                78899999999877544 467888999999999


Q ss_pred             HHHHHHhhhcCccccCCCCCCeEEccC---CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhc
Q 001366          339 VALVDYHHTQGVTFLDLKPSSFKLLQS---NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQ  415 (1092)
Q Consensus       339 l~~l~~lHs~gIvHrDLKP~Nill~~~---~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  415 (1092)
                      |++|+|||.+||||||+||+|+||-..   -.+|++|||++.++.+ +                                
T Consensus       120 Leal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~-g--------------------------------  166 (355)
T KOG0033|consen  120 LEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVND-G--------------------------------  166 (355)
T ss_pred             HHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeCC-c--------------------------------
Confidence            999999999999999999999999643   4599999999988651 0                                


Q ss_pred             ccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCccccccccccccccccccc
Q 001366          416 KFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEE  495 (1092)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  495 (1092)
                                                                                             ......+||
T Consensus       167 -----------------------------------------------------------------------~~~~G~~Gt  175 (355)
T KOG0033|consen  167 -----------------------------------------------------------------------EAWHGFAGT  175 (355)
T ss_pred             -----------------------------------------------------------------------cccccccCC
Confidence                                                                                   001157899


Q ss_pred             ccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHHH--HHhccccCCCCCCCCCChhHHHHHHhccccCC
Q 001366          496 KWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAA--MSDLRDRILPPSFLSENPKEAGFCLWQLHPEP  570 (1092)
Q Consensus       496 ~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP  570 (1092)
                      |.|||||++...+|+.++|||+.|||||-||.|   |.++......  +..-.....+|.+...+|+.++|+.+||..||
T Consensus       176 P~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP  255 (355)
T KOG0033|consen  176 PGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNP  255 (355)
T ss_pred             CcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccCh
Confidence            999999999999999999999999999999985   5543333333  33333345567899999999999999999999


Q ss_pred             CCCCCHHHHhhhhhhhhh
Q 001366          571 LSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       571 ~~Rpsa~eiL~~~~~~~~  588 (1092)
                      .+|+|+.|.|.|||+++.
T Consensus       256 ~kRIta~EAL~HpWi~~r  273 (355)
T KOG0033|consen  256 KKRITADEALKHPWICNR  273 (355)
T ss_pred             hhhccHHHHhCCchhcch
Confidence            999999999999999874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=5.3e-31  Score=305.87  Aligned_cols=238  Identities=22%  Similarity=0.392  Sum_probs=216.9

Q ss_pred             CCCeEEEEEecCCCCEEEEEECCCcEEEEECCC-------------------------------CceEEEeeccCccEEE
Q 001366          828 RSKLSCVCWNNYIKNYLASADYDGVVKLWDACT-------------------------------GQTVSHYIEHEKRAWS  876 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t-------------------------------g~~i~~l~~h~~~V~s  876 (1092)
                      ...++|..|+++ ..+||.|-.|..|++|.+..                               +...+++.+|+++|.+
T Consensus       378 ~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg  456 (707)
T KOG0263|consen  378 YQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG  456 (707)
T ss_pred             CCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence            567899999998 77999999999999998762                               1134567899999999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecC
Q 001366          877 VDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG  955 (1092)
Q Consensus       877 v~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~  955 (1092)
                      +.|+| +.++|+|||.|++||+|.+.+..++..++ |..+|+.++|+|.| ++||+++.|++.++|..... .+...+.+
T Consensus       457 ~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~-~PlRifag  533 (707)
T KOG0263|consen  457 CSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHN-KPLRIFAG  533 (707)
T ss_pred             eeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccC-Cchhhhcc
Confidence            99999 88999999999999999999999999888 56799999999998 79999999999999998875 46789999


Q ss_pred             CCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          956 HEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       956 H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      |.+.|.|++|+ +..++++||.|.+|++||+.        ++..++.|.||..+|.+++|||+|++||+|+.|+.|.|||
T Consensus       534 hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~--------~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD  605 (707)
T KOG0263|consen  534 HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS--------TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD  605 (707)
T ss_pred             cccccceEEECCcccccccCCCCceEEEEEcC--------CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence            99999999999 66799999999999999998        5677999999999999999999999999999999999999


Q ss_pred             CCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1035 RSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1035 ~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +..+.++..+              .+|.+.|.+|.|+.+|..||+||.|.+|++||+
T Consensus       606 l~~~~~v~~l--------------~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  606 LANGSLVKQL--------------KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             cCCCcchhhh--------------hcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            9998887755              367889999999999999999999999999997

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3e-30  Score=295.97  Aligned_cols=306  Identities=21%  Similarity=0.281  Sum_probs=257.6

Q ss_pred             cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeee
Q 001366          747 RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISF-DRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEM  825 (1092)
Q Consensus       747 ~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~f-spdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~  825 (1092)
                      .+....|..+-+.+.....+..     .+.+..+.|.++.| .|+.++||+++..+.+++|+..+        .......
T Consensus       296 ~l~vtaeQnl~l~d~~~l~i~k-----~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~--------~~c~ii~  362 (775)
T KOG0319|consen  296 LLLVTAEQNLFLYDEDELTIVK-----QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT--------SYCQIIP  362 (775)
T ss_pred             eEEEEccceEEEEEccccEEeh-----hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCC--------CceEEEe
Confidence            4455666666666655544433     34466778888876 57889999999999999998765        2223677


Q ss_pred             cCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc----eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEec
Q 001366          826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ----TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI  901 (1092)
Q Consensus       826 ~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~----~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl  901 (1092)
                      +|+..|.++.-..+ +.+|+|||.|++|++|.++.+.    ++....+|+..|.+|+++.....+|+++|.|+++++|++
T Consensus       363 GH~e~vlSL~~~~~-g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l  441 (775)
T KOG0319|consen  363 GHTEAVLSLDVWSS-GDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL  441 (775)
T ss_pred             Cchhheeeeeeccc-CcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence            89999999993333 6899999999999999875442    566778999999999998867789999999999999999


Q ss_pred             CCCce---eeeE-------ecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCE
Q 001366          902 NEKNS---LATI-------KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGT  970 (1092)
Q Consensus       902 ~~~~~---l~~l-------~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~  970 (1092)
                      ...+.   ...+       .|...|+||+.+|+.. ++||||.|.+.++|++.+.. ...++.||+..|.+|.|+ .++.
T Consensus       442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~dq~  519 (775)
T KOG0319|consen  442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKNDQL  519 (775)
T ss_pred             CCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce-EEEEeeCCccceEEEEeccccce
Confidence            76221   1112       2778899999999985 99999999999999999554 578999999999999999 6678


Q ss_pred             EEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccC
Q 001366          971 LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSID 1050 (1092)
Q Consensus       971 L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~ 1050 (1092)
                      ++|+|.|++|+||.+.        +..|+.++.||+..|..+.|-.+|..|++++.||.|++|++.++.++.++      
T Consensus       520 laT~SgD~TvKIW~is--------~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl------  585 (775)
T KOG0319|consen  520 LATCSGDKTVKIWSIS--------TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL------  585 (775)
T ss_pred             eEeccCCceEEEEEec--------cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh------
Confidence            9999999999999998        67899999999999999999999999999999999999999988877654      


Q ss_pred             CCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1051 PISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1051 ~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                              +.|+..|++++-+|+..+++||+.||.|.+|.
T Consensus       586 --------D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  586 --------DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             --------hhccceeEEEeecCccceeEecCCCeEEEEee
Confidence                    68999999999999999999999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=9.1e-32  Score=290.25  Aligned_cols=272  Identities=19%  Similarity=0.272  Sum_probs=233.0

Q ss_pred             cCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccc
Q 001366          742 QNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVY  819 (1092)
Q Consensus       742 ~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~  819 (1092)
                      |.|++  .+.++..|...+|....|...-     .+..|.++|+++.|+++|.++++|..+|.||+|+.+-..   +   
T Consensus       104 WtPeGRRLltgs~SGEFtLWNg~~fnFEt-----ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn---V---  172 (464)
T KOG0284|consen  104 WTPEGRRLLTGSQSGEFTLWNGTSFNFET-----ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN---V---  172 (464)
T ss_pred             EcCCCceeEeecccccEEEecCceeeHHH-----HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---h---
Confidence            66663  4688888999999875443322     245899999999999999999999999999999976411   1   


Q ss_pred             cceeeec-CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEE
Q 001366          820 YPAVEMS-NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL  898 (1092)
Q Consensus       820 ~~~~~~~-h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~i  898 (1092)
                        ..... |...|.+++|+|. ...++|||.||+|+|||....+.-..+.+|.-.|.+++|+| ...++||||.|..|++
T Consensus       173 --k~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKl  248 (464)
T KOG0284|consen  173 --KIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKL  248 (464)
T ss_pred             --HHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEe
Confidence              11222 4589999999996 88999999999999999998888888899999999999999 6779999999999999


Q ss_pred             EecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc--CCCEEEEEE
Q 001366          899 WNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL--DSGTLVTAS  975 (1092)
Q Consensus       899 WDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs--~~~~L~Sgs  975 (1092)
                      ||.+++.|+.++. |...|..+.|+|++ ++|++++.|..+++||+|+.+ .+.++++|+..|+++.|+  ..+.|.+|+
T Consensus       249 WDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk-El~~~r~Hkkdv~~~~WhP~~~~lftsgg  326 (464)
T KOG0284|consen  249 WDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK-ELFTYRGHKKDVTSLTWHPLNESLFTSGG  326 (464)
T ss_pred             ecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH-HHHHhhcchhhheeeccccccccceeecc
Confidence            9999999999988 67889999999999 699999999999999999654 467889999999999998  667899999


Q ss_pred             CCCeEEEEEcCCCCCCCCCCCceeEE-EcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCC
Q 001366          976 TDNKLKLWDLKRTSHTGPSTNACSLT-FSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLP 1038 (1092)
Q Consensus       976 ~Dg~I~vWDl~~~~~~~~~~~~~~~~-l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~ 1038 (1092)
                      .||.|..|.+....        ++.. -.+|...|++++|+|-|-+||+|+.|.++++|....+
T Consensus       327 ~Dgsvvh~~v~~~~--------p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  327 SDGSVVHWVVGLEE--------PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             CCCceEEEeccccc--------cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            99999999997322        2222 2479999999999999999999999999999976543

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=9.1e-32  Score=296.12  Aligned_cols=247  Identities=15%  Similarity=0.138  Sum_probs=192.2

Q ss_pred             ceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccccCC
Q 001366          224 GIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGG  303 (1092)
Q Consensus       224 Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (1092)
                      ++||+|...    -+++.+++|+.--+.-..+...-.++...+....||||+......+++..+.               
T Consensus        40 a~V~~A~c~----p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LW---------------  100 (516)
T KOG0582|consen   40 AVVYLARCI----PTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELW---------------  100 (516)
T ss_pred             eEeeeeeec----ccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeE---------------
Confidence            689999873    2367777777644333344455666777788889999999888888777666               


Q ss_pred             CcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccccc
Q 001366          304 LRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLES  382 (1092)
Q Consensus       304 ~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~  382 (1092)
                       ++|.|+.+|++.+.|+..- .-+++..+..|++++|+||+|||.+|-||||||++||||+.+|.|||+|||.+-.+.+.
T Consensus       101 -vVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~  179 (516)
T KOG0582|consen  101 -VVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDS  179 (516)
T ss_pred             -EeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeeeccc
Confidence             4899999999999997642 24888889999999999999999999999999999999999999999999987665521


Q ss_pred             ccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccccc
Q 001366          383 ASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHH  462 (1092)
Q Consensus       383 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  462 (1092)
                      +.                                                                              
T Consensus       180 G~------------------------------------------------------------------------------  181 (516)
T KOG0582|consen  180 GD------------------------------------------------------------------------------  181 (516)
T ss_pred             Cc------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             ccCCCCCccCCCCCcccccccccccccccccccccccCcccccC--CCCCccccchhhhHHHHHHcCC---CCcHHHHHH
Q 001366          463 TNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG--GVCTTSSNIYSLGVLFFELFGR---FDSERALAA  537 (1092)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~--~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~  537 (1092)
                                           .....++..+||++|||||++..  ..|++|+||||||++..||.+|   |.--.....
T Consensus       182 ---------------------R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkv  240 (516)
T KOG0582|consen  182 ---------------------RQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKV  240 (516)
T ss_pred             ---------------------eeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHH
Confidence                                 01112247899999999999765  6699999999999999999986   443344555


Q ss_pred             HHHhccccCCCCC--------CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          538 AMSDLRDRILPPS--------FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       538 ~~~~~~~~~~p~~--------~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ++..+...+.-+.        ....+..++.|+..||.+||.+||||.++|.|+||...+
T Consensus       241 Ll~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh~FFk~~k  300 (516)
T KOG0582|consen  241 LLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKHAFFKKAK  300 (516)
T ss_pred             HHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhccHHHhhcc
Confidence            5666665442111        122335688999999999999999999999999998754

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=1.4e-31  Score=292.67  Aligned_cols=312  Identities=13%  Similarity=0.143  Sum_probs=208.9

Q ss_pred             CCchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecC
Q 001366          209 SGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSN  284 (1092)
Q Consensus       209 ~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (1092)
                      =+++-|.+.+.|+  -.|.||.....+.    ...-|.||.--...  .....++..+..+|..+.||-+++++.....+
T Consensus        74 l~l~~f~llk~LG~GdiG~VyL~~l~~t----~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~  149 (459)
T KOG0610|consen   74 LGLRHFRLLKRLGCGDIGTVYLVELRGT----NCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETD  149 (459)
T ss_pred             cCHHHHHHHHHcCCCCceeEEEEEecCC----CceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeecc
Confidence            3777888888887  3799999998652    12222333211111  12234455556678889999999988776655


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                      ...+                .+||||.||+|.-++++ .+..+++..++.|+..++.||+|||-+|||.|||||+||||-
T Consensus       150 ~~~c----------------l~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvr  213 (459)
T KOG0610|consen  150 KYSC----------------LVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVR  213 (459)
T ss_pred             ceeE----------------EEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEe
Confidence            5554                28999999999999854 556788889999999999999999999999999999999999


Q ss_pred             cCCcEEEecccccccccccccC-CCCCCc--hhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccc
Q 001366          364 QSNQVKYIGPIIQKETLESASL-DIPHSE--NYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIET  440 (1092)
Q Consensus       364 ~~~~vkl~Dfg~~~~~~~~~~~-~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1092)
                      ++|+|.|+||-|+....-..+. ......  ...-+.+..+...+........++.                        
T Consensus       214 edGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~------------------------  269 (459)
T KOG0610|consen  214 EDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKR------------------------  269 (459)
T ss_pred             cCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccchhcccccc------------------------
Confidence            9999999999998776321110 000000  0000000000000000000000000                        


Q ss_pred             cCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhH
Q 001366          441 ANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGV  520 (1092)
Q Consensus       441 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGv  520 (1092)
                         .+ ++.+..++....                   .   +......-.+++||-.|.|||++.|...+.++|+|+|||
T Consensus       270 ---~k-~~~~~~~~~p~~-------------------~---aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGI  323 (459)
T KOG0610|consen  270 ---KK-KDESASRSLPEL-------------------V---AEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGI  323 (459)
T ss_pred             ---cc-ccccccccchhh-------------------h---cCCCCccccccccccccccceeeecCCCCchhhHHHHHH
Confidence               00 111111000000                   0   000011123789999999999999999999999999999


Q ss_pred             HHHHHcC---CCCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC----HHHHhhhhhhhhhhc
Q 001366          521 LFFELFG---RFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT----TREILQSEVTNEFQE  590 (1092)
Q Consensus       521 ll~ell~---~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps----a~eiL~~~~~~~~~~  590 (1092)
                      +|||||.   ||.+..........+....-.|..+..+-.+++||.+||.+||++|..    |.||.+||||.+.+=
T Consensus       324 flYEmLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVnW  400 (459)
T KOG0610|consen  324 FLYEMLYGTTPFKGSNNKETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVNW  400 (459)
T ss_pred             HHHHHHhCCCCcCCCCchhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcCccccCCCh
Confidence            9999995   588887777777777665544555566688999999999999999998    999999999988643

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.97  E-value=7.1e-32  Score=303.20  Aligned_cols=248  Identities=14%  Similarity=0.186  Sum_probs=178.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ++.|+||++...    ..+..++.|+..............++..++...+|||++.+.+....+...+   
T Consensus         7 y~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~---   79 (288)
T cd07871           7 YVKLDKLGEGTYATVFKGRSK----LTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLT---   79 (288)
T ss_pred             ceEeeEEecCCCEEEEEEEEC----CCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE---
Confidence            4444443  478999999752    2345566655432222222334456777888899999998766543322222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+|||+.| +|.+++...+..++...++.+++||+.||+|||++||+||||||+|||++.++.+|++
T Consensus        80 -------------lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~  145 (288)
T cd07871          80 -------------LVFEYLDS-DLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLA  145 (288)
T ss_pred             -------------EEEeCCCc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEC
Confidence                         37999986 9999998777777888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.....                                                                     
T Consensus       146 DfG~~~~~~~~---------------------------------------------------------------------  156 (288)
T cd07871         146 DFGLARAKSVP---------------------------------------------------------------------  156 (288)
T ss_pred             cCcceeeccCC---------------------------------------------------------------------
Confidence            99988653210                                                                     


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                        ........||++|+|||.+.+ ..++.++|||||||++|||+++  
T Consensus       157 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~  202 (288)
T cd07871         157 ----------------------------------TKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRP  202 (288)
T ss_pred             ----------------------------------CccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCC
Confidence                                              000113467899999999876 5689999999999999999986  


Q ss_pred             -CCcHHHHHHHHHhcc--cc------------------CCCC--------CCCCCChhHHHHHHhccccCCCCCCCHHHH
Q 001366          529 -FDSERALAAAMSDLR--DR------------------ILPP--------SFLSENPKEAGFCLWQLHPEPLSRPTTREI  579 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~--~~------------------~~p~--------~~~~~~~~~~~li~~lL~~dP~~Rpsa~ei  579 (1092)
                       |.+............  ..                  .+|.        .....++++.+|+.+||++||.+|||+.|+
T Consensus       203 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~  282 (288)
T cd07871         203 MFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAA  282 (288)
T ss_pred             CCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHH
Confidence             433322221111110  00                  0010        112346778999999999999999999999


Q ss_pred             hhhhhh
Q 001366          580 LQSEVT  585 (1092)
Q Consensus       580 L~~~~~  585 (1092)
                      |+||||
T Consensus       283 l~hp~f  288 (288)
T cd07871         283 LRHSYF  288 (288)
T ss_pred             hcCCCC
Confidence            999997

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-30  Score=279.92  Aligned_cols=286  Identities=19%  Similarity=0.335  Sum_probs=236.7

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+..|.+.|.-+.|+++|+|||+|+.|.+..||++....    .........+|..+|..+.|+|| .++|++|+.|..+
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~----~~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~  293 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV----HFKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVL  293 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc----ceeeeeeeecccCceEEEEECCC-CCeEEecCchHhe
Confidence            467899999999999999999999999999999986421    23344567789999999999999 8999999999999


Q ss_pred             EEEECCCCceEEEee-ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec--CCceEEEEEccCCCeEEE
Q 001366          854 KLWDACTGQTVSHYI-EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN--IANVCCVQFSAHSSHLLA  930 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~-~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~--~~~V~sl~fsp~~~~~la  930 (1092)
                      ++||+.+|.+...+. +|...+.+++|.| |+..+++|+.|+++..||+.. ..+..++.  ...|.+++..+||. +++
T Consensus       294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk-~vl  370 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGK-YVL  370 (519)
T ss_pred             eeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCc-EEE
Confidence            999999999887775 3568899999999 999999999999999999984 44444442  35699999999997 666


Q ss_pred             EEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCe
Q 001366          931 FGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009 (1092)
Q Consensus       931 tgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V 1009 (1092)
                      +.+.|..|++|+..+... .. +.....+|+++..+ ++.++++.=.+..|.+||+.        ....++.+.||...-
T Consensus       371 ~v~~d~~i~l~~~e~~~d-r~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~--------e~~lv~kY~Ghkq~~  440 (519)
T KOG0293|consen  371 LVTVDKKIRLYNREARVD-RG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE--------ENKLVRKYFGHKQGH  440 (519)
T ss_pred             EEecccceeeechhhhhh-hc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecc--------hhhHHHHhhcccccc
Confidence            777999999999876432 11 22345689999999 66677777789999999998        356677888888765


Q ss_pred             EEE--EEec-CCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC-CCCEEEEEecCCe
Q 001366         1010 NFV--GLST-ADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR-RSDMVVAANSSGC 1085 (1092)
Q Consensus      1010 ~~v--~~sp-dg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp-d~~~Lasgs~DG~ 1085 (1092)
                      .-+  +|-- +..+||+||+|+.|+||+..+++++...              .||...|++|+|+| +-.++|+||.||+
T Consensus       441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L--------------sGHs~~vNcVswNP~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL--------------SGHSKTVNCVSWNPADPEMFASASDDGT  506 (519)
T ss_pred             eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee--------------cCCcceeeEEecCCCCHHHhhccCCCCe
Confidence            444  4443 3479999999999999999999988754              58889999999999 5678999999999


Q ss_pred             EEEEEc
Q 001366         1086 IKVLQM 1091 (1092)
Q Consensus      1086 V~vW~l 1091 (1092)
                      ||||-.
T Consensus       507 IRIWg~  512 (519)
T KOG0293|consen  507 IRIWGP  512 (519)
T ss_pred             EEEecC
Confidence            999964

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=8.5e-32  Score=290.64  Aligned_cols=247  Identities=22%  Similarity=0.245  Sum_probs=189.7

Q ss_pred             hHHHhhhcc-c-cceeeeCCCCCccccccccccccccccccC-chhh-HhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTLK-G-KGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDA-ALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~~-g-~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.++|+ | .|.|-++...   + .+..+++|-.--.-+ +.+. ..--++..++.+++||+|+..++..--..-. 
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~---~-sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKI-  128 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEH---K-SGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKI-  128 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhc---c-CCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceE-
Confidence            577777775 3 5777777662   1 255666633222222 2222 2334566678899999999866654322111 


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                     -++|||..||.|+|||..++. +++.++++||+||++||.|||.++|+|||||-+||||+.+|++
T Consensus       129 ---------------vivMEYaS~GeLYDYiSer~~-LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~Ni  192 (668)
T KOG0611|consen  129 ---------------VIVMEYASGGELYDYISERGS-LSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNI  192 (668)
T ss_pred             ---------------EEEEEecCCccHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCe
Confidence                           138999999999999988876 6666999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||++..+.+                                                                   
T Consensus       193 KIADFGLSNly~~-------------------------------------------------------------------  205 (668)
T KOG0611|consen  193 KIADFGLSNLYAD-------------------------------------------------------------------  205 (668)
T ss_pred             eeeccchhhhhcc-------------------------------------------------------------------
Confidence            9999999876541                                                                   


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHHHHHHcC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvll~ell~  527 (1092)
                                                           ...++++||+|.|++||+++|.+| ++.+|-|||||+||.|+.
T Consensus       206 -------------------------------------~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVy  248 (668)
T KOG0611|consen  206 -------------------------------------KKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVY  248 (668)
T ss_pred             -------------------------------------ccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhh
Confidence                                                 123458899999999999999998 689999999999999997


Q ss_pred             C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          528 R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      |   |++........++.+.....|..   .....+||.|||..+|.+|.|..+|-.|=|.+-
T Consensus       249 GtMPFDG~Dhk~lvrQIs~GaYrEP~~---PSdA~gLIRwmLmVNP~RRATieDiAsHWWvNw  308 (668)
T KOG0611|consen  249 GTMPFDGRDHKRLVRQISRGAYREPET---PSDASGLIRWMLMVNPERRATIEDIASHWWVNW  308 (668)
T ss_pred             cccccCCchHHHHHHHhhcccccCCCC---CchHHHHHHHHHhcCcccchhHHHHhhhheeec
Confidence            5   88876665555555544443433   345779999999999999999999999988874

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.7e-30  Score=265.37  Aligned_cols=282  Identities=22%  Similarity=0.317  Sum_probs=236.2

Q ss_pred             EEEEEcCC-CCEEEEEe-------CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          783 CSISFDRD-EDHFAAAG-------VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       783 ~sl~fspd-g~~latgg-------~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      .++.|+|- .++||++.       ..|++.|-++....     .......+.-...+..|+|+++..+.+++++.||+++
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~-----gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLr   86 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK-----GIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLR   86 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCC-----CeEEEEeeecccceeEeeecCCCcceEEEEecCceEE
Confidence            45788883 33444443       45788888875211     1111223344678999999999899999999999999


Q ss_pred             EEECCC-CceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEE
Q 001366          855 LWDACT-GQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       855 IWD~~t-g~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      |||+.. ..++..++.|...|.+++|++.....++++|+|++||+||...+..+.++. |..-|...+|+|...++++++
T Consensus        87 l~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~  166 (311)
T KOG0277|consen   87 LFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASA  166 (311)
T ss_pred             EeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEc
Confidence            999643 358899999999999999999888999999999999999999999999998 567799999999988999999


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc--CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeE
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL--DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN 1010 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs--~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~ 1010 (1092)
                      +.|+++++||+|...+.+. +..|...+.++.|+  +...|+||+.|+.|++||+++.       ..++..+.+|.-.|+
T Consensus       167 Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-------r~pl~eL~gh~~AVR  238 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-------RTPLFELNGHGLAVR  238 (311)
T ss_pred             cCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhc-------cccceeecCCceEEE
Confidence            9999999999998766554 78999999999998  7788999999999999999964       356889999999999


Q ss_pred             EEEEecC-CCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC-CCCEEEEEecCCeEEE
Q 001366         1011 FVGLSTA-DGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR-RSDMVVAANSSGCIKV 1088 (1092)
Q Consensus      1011 ~v~~spd-g~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp-d~~~Lasgs~DG~V~v 1088 (1092)
                      .|.|||. ...||++|.|-+++|||...+...             .+....|+.+|..+.|++ +...+|+++.|+.++|
T Consensus       239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds~-------------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V  305 (311)
T KOG0277|consen  239 KVKFSPHHASLLASASYDMTVRIWDPERQDSA-------------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV  305 (311)
T ss_pred             EEecCcchhhHhhhccccceEEecccccchhh-------------hhhhhccceEEeccccccccCceeeecccccceee
Confidence            9999997 458999999999999997644321             233457899999999999 6789999999999999


Q ss_pred             EE
Q 001366         1089 LQ 1090 (1092)
Q Consensus      1089 W~ 1090 (1092)
                      |+
T Consensus       306 w~  307 (311)
T KOG0277|consen  306 WN  307 (311)
T ss_pred             ec
Confidence            97

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-31  Score=298.21  Aligned_cols=227  Identities=20%  Similarity=0.177  Sum_probs=177.2

Q ss_pred             ccccceeeeCCCCCccccccccccc-cccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDT-KAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+..|.||+|++.+      +.+|+ ||.         ..+-...+-|++++||||+.+           +++++.-|++
T Consensus       134 SGaQGAVF~Grl~n------etVAVKKV~---------elkETdIKHLRkLkH~NII~F-----------kGVCtqsPcy  187 (904)
T KOG4721|consen  134 SGAQGAVFLGRLHN------ETVAVKKVR---------ELKETDIKHLRKLKHPNIITF-----------KGVCTQSPCY  187 (904)
T ss_pred             cCcccceeeeeccC------ceehhHHHh---------hhhhhhHHHHHhccCcceeeE-----------eeeecCCcee
Confidence            34689999999954      44444 333         344555778999999999963           3357788888


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                      |     ++||||.-|-|.+.|+... ++.......+.++|+.|+.|||.+.|||||||.-||||+.+..|||+|||.++.
T Consensus       188 C-----IiMEfCa~GqL~~VLka~~-~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e  261 (904)
T KOG4721|consen  188 C-----IIMEFCAQGQLYEVLKAGR-PITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKE  261 (904)
T ss_pred             E-----EeeeccccccHHHHHhccC-ccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHh
Confidence            8     8999999999999998765 456657889999999999999999999999999999999999999999999887


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +.+-                                                                            
T Consensus       262 ~~~~----------------------------------------------------------------------------  265 (904)
T KOG4721|consen  262 LSDK----------------------------------------------------------------------------  265 (904)
T ss_pred             hhhh----------------------------------------------------------------------------
Confidence            6520                                                                            


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                 .+.+ +++||-.|||||+|.+.+++.|+|||||||+||||||+   |..-...
T Consensus       266 ---------------------------STkM-SFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdss  317 (904)
T KOG4721|consen  266 ---------------------------STKM-SFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSS  317 (904)
T ss_pred             ---------------------------hhhh-hhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchh
Confidence                                       0111 67899999999999999999999999999999999997   2221111


Q ss_pred             HHHHHhccccCCC-CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          536 AAAMSDLRDRILP-PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       536 ~~~~~~~~~~~~p-~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      ..++.. -...+. |........+.-|++.||.-.|..||++++||.|-
T Consensus       318 AIIwGV-GsNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~Hl  365 (904)
T KOG4721|consen  318 AIIWGV-GSNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHL  365 (904)
T ss_pred             eeEEec-cCCcccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence            111111 111222 23333456688999999999999999999999993

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.97  E-value=5.4e-32  Score=284.25  Aligned_cols=250  Identities=17%  Similarity=0.180  Sum_probs=189.0

Q ss_pred             CCchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC-ch-hhHhhhhhhhhhccCCCCCCCccccceecC
Q 001366          209 SGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PS-DAALKAAGAMMVASNASPKPVGVGTAVVSN  284 (1092)
Q Consensus       209 ~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (1092)
                      .+-..|.+.+|++  .+|.|..-+.    +..+...|.|+..-... +. +..----+...|....||.++.+.......
T Consensus        41 ~~l~dfe~~~tlGtGSFGrV~LVr~----k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~  116 (355)
T KOG0616|consen   41 YSLQDFERLKTLGTGSFGRVHLVRE----KHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDN  116 (355)
T ss_pred             cchhhhhheeeeccCccceEEEEEE----ccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccC
Confidence            3556788888887  3576665554    22233333433311110 11 111122234456667889888776555555


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                      ..+++                +|+|.+||.|..+|++.++ +++..++.|+.||+.||+|||+++|++|||||+||||+.
T Consensus       117 ~~lym----------------vmeyv~GGElFS~Lrk~~r-F~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~  179 (355)
T KOG0616|consen  117 SNLYM----------------VMEYVPGGELFSYLRKSGR-FSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQ  179 (355)
T ss_pred             CeEEE----------------EEeccCCccHHHHHHhcCC-CCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeecc
Confidence            55553                8999999999999998876 555599999999999999999999999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      +|.+|++|||.|+...+.                                                              
T Consensus       180 ~G~iKitDFGFAK~v~~r--------------------------------------------------------------  197 (355)
T KOG0616|consen  180 NGHIKITDFGFAKRVSGR--------------------------------------------------------------  197 (355)
T ss_pred             CCcEEEEeccceEEecCc--------------------------------------------------------------
Confidence            999999999999885510                                                              


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~e  524 (1092)
                                                                  ..+.||||-|+|||.+...+|+.++|.|||||++||
T Consensus       198 --------------------------------------------T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYE  233 (355)
T KOG0616|consen  198 --------------------------------------------TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYE  233 (355)
T ss_pred             --------------------------------------------EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHH
Confidence                                                        116899999999999999999999999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhccccCC-CCCCCCCChhHHHHHHhccccCCCCC-----CCHHHHhhhhhhhhh
Q 001366          525 LFGR---FDSERALAAAMSDLRDRIL-PPSFLSENPKEAGFCLWQLHPEPLSR-----PTTREILQSEVTNEF  588 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~li~~lL~~dP~~R-----psa~eiL~~~~~~~~  588 (1092)
                      |++|   |..........+++..... |+.|   ++.+.+|+..+|+.|-.+|     ...++|..||||++.
T Consensus       234 MlaG~pPF~~~~~~~iY~KI~~~~v~fP~~f---s~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v  303 (355)
T KOG0616|consen  234 MLAGYPPFYDDNPIQIYEKILEGKVKFPSYF---SSDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGV  303 (355)
T ss_pred             HHcCCCCCcCCChHHHHHHHHhCcccCCccc---CHHHHHHHHHHHhhhhHhhhcCcCCCccccccCcccccc
Confidence            9986   5555565555566665544 4444   7999999999999999999     466899999999864

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-32  Score=302.80  Aligned_cols=258  Identities=17%  Similarity=0.180  Sum_probs=192.6

Q ss_pred             eecccCCchhHHHhhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceec
Q 001366          204 KMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVS  283 (1092)
Q Consensus       204 ~~~~~~~f~~~~~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (1092)
                      ++--+.-|.... +...+.+|.||||...    +.++.+|+|+.--+.......---.++.++...+++|+...+...+.
T Consensus         8 ~~~~~~~~~~~~-~IgrGsfG~Vyk~~d~----~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~   82 (467)
T KOG0201|consen    8 KIDPELLYTKLE-LIGRGSFGEVYKAIDN----KTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLK   82 (467)
T ss_pred             cCCcccccccch-hccccccceeeeeeec----cccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheee
Confidence            333344444332 2334567999999983    45777888776333333332333445667788888988765555443


Q ss_pred             CCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          284 NGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                      +..+                ++.||||.||++.++|+..+.. .+.++..|+++++.||+|+|.++.+|||||+.|||+.
T Consensus        83 g~~L----------------wiiMey~~gGsv~~lL~~~~~~-~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s  145 (467)
T KOG0201|consen   83 GTKL----------------WIIMEYCGGGSVLDLLKSGNIL-DEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLS  145 (467)
T ss_pred             cccH----------------HHHHHHhcCcchhhhhccCCCC-ccceeeeehHHHHHHhhhhhhcceecccccccceeEe
Confidence            3333                3489999999999999887643 6668889999999999999999999999999999999


Q ss_pred             cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCc
Q 001366          364 QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANE  443 (1092)
Q Consensus       364 ~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1092)
                      ..|.||++|||++-.+....                                                            
T Consensus       146 ~~g~vkl~DfgVa~ql~~~~------------------------------------------------------------  165 (467)
T KOG0201|consen  146 ESGDVKLADFGVAGQLTNTV------------------------------------------------------------  165 (467)
T ss_pred             ccCcEEEEecceeeeeechh------------------------------------------------------------
Confidence            99999999999987654110                                                            


Q ss_pred             cccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHH
Q 001366          444 SDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       444 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~  523 (1092)
                                                                ... .+++|||+|||||++.+..|+.++||||||++.+
T Consensus       166 ------------------------------------------~rr-~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITai  202 (467)
T KOG0201|consen  166 ------------------------------------------KRR-KTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAI  202 (467)
T ss_pred             ------------------------------------------hcc-ccccccccccchhhhccccccchhhhhhhhHHHH
Confidence                                                      000 2789999999999999989999999999999999


Q ss_pred             HHcCCCCcHHHHHHHHHhc--cccCCCCCCC-CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          524 ELFGRFDSERALAAAMSDL--RDRILPPSFL-SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       524 ell~~f~~~~~~~~~~~~~--~~~~~p~~~~-~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ||++|-++..+... |+.+  -....||.+. ..++.+++|+..||.++|+.||+|.++|.|+|+..
T Consensus       203 Ela~GePP~s~~hP-mrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh~FIk~  268 (467)
T KOG0201|consen  203 ELAKGEPPHSKLHP-MRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLKHKFIKR  268 (467)
T ss_pred             HHhcCCCCCcccCc-ceEEEeccCCCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhhhHHHHh
Confidence            99998555433322 2222  1223344433 55688999999999999999999999999999976

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=9.6e-31  Score=282.89  Aligned_cols=285  Identities=18%  Similarity=0.271  Sum_probs=237.5

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+..|...|..+.|-++...|++||.|..|++|++....     ........+..+.|+.+.|.++ +.++++++.|+.+
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-----~~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~  243 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-----SELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNL  243 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-----hhhhhhhhccCCCcceeeecCC-CceEEeecCCCce
Confidence            356899999999999999999999999999999986521     1222344566788999999998 8888899999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      ++|++...+...+|.+|++.|+++.|.. ....+++|+.|.+||+||+....|..++...+.+..|..++   ..+++|.
T Consensus       244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~---~~~~SgH  319 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI---SDVISGH  319 (459)
T ss_pred             eeeeccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEecc---eeeeecc
Confidence            9999999999999999999999999998 44459999999999999999999999988888888887763   4789999


Q ss_pred             CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC----CCCC
Q 001366          934 ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG----HTNE 1008 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~----h~~~ 1008 (1092)
                      .|++|++||+|+... ......+. .|+++..+ ++..|++++.|.++.+.|+++..        ...++..    -...
T Consensus       320 ~DkkvRfwD~Rs~~~-~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e--------I~~~~sA~g~k~asD  389 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADK-TRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE--------IRQTFSAEGFKCASD  389 (459)
T ss_pred             cccceEEEeccCCce-eeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc--------EEEEeeccccccccc
Confidence            999999999998765 34445544 89999998 67789999999999999999543        2223322    1123


Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEE
Q 001366         1009 KNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088 (1092)
Q Consensus      1009 V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~v 1088 (1092)
                      .+.+.|||++.|+|+||.||.|+||++.+++.......            ......|++++|+|.|..|++++.++.+.+
T Consensus       390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~------------s~s~~aI~s~~W~~sG~~Llsadk~~~v~l  457 (459)
T KOG0288|consen  390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL------------STSNAAITSLSWNPSGSGLLSADKQKAVTL  457 (459)
T ss_pred             cceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc------------CCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence            77899999999999999999999999999887665541            111226999999999999999999999999


Q ss_pred             EE
Q 001366         1089 LQ 1090 (1092)
Q Consensus      1089 W~ 1090 (1092)
                      |.
T Consensus       458 W~  459 (459)
T KOG0288|consen  458 WT  459 (459)
T ss_pred             cC
Confidence            94

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.3e-29  Score=271.86  Aligned_cols=283  Identities=23%  Similarity=0.321  Sum_probs=236.5

Q ss_pred             ccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCC---CCEEEEEeCCCcEE
Q 001366          728 DRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRD---EDHFAAAGVSKKIK  804 (1092)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspd---g~~latgg~D~~I~  804 (1092)
                      -|++|+.++..    .+.-+|++++||++++|+..- ++.     ..+.+|.++|.+++|.-.   ...|++||.|.+++
T Consensus       103 ~hdDWVSsv~~----~~~~IltgsYDg~~riWd~~G-k~~-----~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~  172 (423)
T KOG0313|consen  103 LHDDWVSSVKG----ASKWILTGSYDGTSRIWDLKG-KSI-----KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR  172 (423)
T ss_pred             cchhhhhhhcc----cCceEEEeecCCeeEEEecCC-ceE-----EEEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence            36788888754    366789999999999998642 222     235699999999888643   33699999999999


Q ss_pred             EEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC------------------------
Q 001366          805 IFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT------------------------  860 (1092)
Q Consensus       805 Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t------------------------  860 (1092)
                      +|.++.....   ........+|...|-+|.-.++ +.+++|||+|.+|+||+..+                        
T Consensus       173 Lw~~~~~~~~---~~~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~  248 (423)
T KOG0313|consen  173 LWKWNVGENK---VKALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGG  248 (423)
T ss_pred             EEEecCchhh---hhHHhHhcccccceeEEEecCC-CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccc
Confidence            9998753221   1122233489999999999998 99999999999999999321                        


Q ss_pred             -CceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEE
Q 001366          861 -GQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTY  939 (1092)
Q Consensus       861 -g~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~  939 (1092)
                       +.++.++.+|+.+|.+|.|++  ...++|+|+|.+|+.||+.++.++.++.....++|+..+|.. .+|++|+.|..++
T Consensus       249 ~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~-~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  249 TRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLS-KLLASGSSDRHIR  325 (423)
T ss_pred             ccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeeccccc-ceeeecCCCCcee
Confidence             135677889999999999997  678999999999999999999999999999999999999976 5999999999999


Q ss_pred             EEEcCCCC--cceEEecCCCCCeEEEEEc--CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEe
Q 001366          940 CYDLRNAR--APWCVLAGHEKAVSYVKFL--DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLS 1015 (1092)
Q Consensus       940 vwDlr~~~--~~~~~l~~H~~~V~~v~fs--~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s 1015 (1092)
                      +||.|++.  .+..++.+|++.|.++.|+  +...|++|+.||++++||+|.       ...+++.+.+|...|.++.|+
T Consensus       326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS-------~k~plydI~~h~DKvl~vdW~  398 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS-------TKAPLYDIAGHNDKVLSVDWN  398 (423)
T ss_pred             ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc-------CCCcceeeccCCceEEEEecc
Confidence            99999764  3556789999999999999  445699999999999999994       345789999999999999998


Q ss_pred             cCCCEEEEEecCCcEEEEeC
Q 001366         1016 TADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus      1016 pdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                      . +.+|++||.|++|+|+..
T Consensus       399 ~-~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  399 E-GGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             C-CceEEeccCcceEEEecc
Confidence            4 568999999999999953

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.97  E-value=1.5e-31  Score=305.81  Aligned_cols=242  Identities=16%  Similarity=0.152  Sum_probs=179.9

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++....    .+..++.|+......  ........++..++....|||++.+......+...+         
T Consensus         5 ~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~---------   71 (323)
T cd05571           5 KGTFGKVILVREKA----TGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLC---------   71 (323)
T ss_pred             eCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEE---------
Confidence            46789999887522    245556655432211  112233455667788889999998766544333333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||+.|++|.+++...+ .+++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus        72 -------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~  143 (323)
T cd05571          72 -------FVMEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCK  143 (323)
T ss_pred             -------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCc
Confidence                   3899999999999997654 56777899999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       144 ~~~~~~--------------------------------------------------------------------------  149 (323)
T cd05571         144 EGISDG--------------------------------------------------------------------------  149 (323)
T ss_pred             ccccCC--------------------------------------------------------------------------
Confidence            522000                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                   ......+||+.|+|||++.+..++.++|||||||+||||+++   |.....
T Consensus       150 -----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~  200 (323)
T cd05571         150 -----------------------------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  200 (323)
T ss_pred             -----------------------------CcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCH
Confidence                                         001145799999999999999999999999999999999986   433322


Q ss_pred             HHHHHHhcccc-CCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          535 LAAAMSDLRDR-ILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~~~-~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      ........... .+|   ...++++.+|+.+||++||++||     ++.+|++||||...
T Consensus       201 ~~~~~~~~~~~~~~p---~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~  257 (323)
T cd05571         201 EKLFELILMEEIRFP---RTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASI  257 (323)
T ss_pred             HHHHHHHHcCCCCCC---CCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence            22222222221 222   23578899999999999999999     89999999999764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.8e-28  Score=281.08  Aligned_cols=330  Identities=19%  Similarity=0.234  Sum_probs=263.1

Q ss_pred             hhccchhhhhhccccccCCCCcEEeEcCCeEEEEEccc------------------------ce-----EEeeEEeeeec
Q 001366          726 LRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSK------------------------FE-----VQGMLRTGEFN  776 (1092)
Q Consensus       726 l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~------------------------~~-----~~~~l~~~~l~  776 (1092)
                      +.+|.+.+.+..+  ..+.....+.+.||.+-+|.+..                        -+     .....+.+-+.
T Consensus       185 l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln  262 (893)
T KOG0291|consen  185 LNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLN  262 (893)
T ss_pred             ccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeec
Confidence            5567777666544  23344567889999999998861                        00     00111223344


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC-CcEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD-GVVKL  855 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D-gtV~I  855 (1092)
                      ..+..|++.+||+..+.||+|=.+|...+|++...       ......--...+|..++|+.. |++||.|+.- |.+-|
T Consensus       263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f-------~lih~LSis~~~I~t~~~N~t-GDWiA~g~~klgQLlV  334 (893)
T KOG0291|consen  263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF-------NLIHSLSISDQKILTVSFNST-GDWIAFGCSKLGQLLV  334 (893)
T ss_pred             ccccceeeeeccCCceEEEEEecCCeeEEEecCCc-------eEEEEeecccceeeEEEeccc-CCEEEEcCCccceEEE
Confidence            55689999999999999999999999999998751       111122224678999999987 8999988765 89999


Q ss_pred             EECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEEC
Q 001366          856 WDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSA  934 (1092)
Q Consensus       856 WD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~  934 (1092)
                      |+..+...+-..++|...+.+++++| |+.++|+|+.||.|||||..++.|+.+|. |.+.|+.++|+..+ +.+++.+-
T Consensus       335 weWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g-~~llssSL  412 (893)
T KOG0291|consen  335 WEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSL  412 (893)
T ss_pred             EEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC-CEEEEeec
Confidence            99999999999999999999999999 99999999999999999999999999998 78899999999998 48999999


Q ss_pred             CCeEEEEEcCCCCcceEEecC-CCCCeEEEEEcCCC-EEEEEECCC-eEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE
Q 001366          935 DYRTYCYDLRNARAPWCVLAG-HEKAVSYVKFLDSG-TLVTASTDN-KLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011 (1092)
Q Consensus       935 Dg~I~vwDlr~~~~~~~~l~~-H~~~V~~v~fs~~~-~L~Sgs~Dg-~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~ 1011 (1092)
                      ||+|+.||+...+. ..++.. ..-...||+..+.+ .+..|+.|. .|.||++.        +++.+-.+.||.++|.+
T Consensus       413 DGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q--------TGqllDiLsGHEgPVs~  483 (893)
T KOG0291|consen  413 DGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ--------TGQLLDILSGHEGPVSG  483 (893)
T ss_pred             CCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee--------cCeeeehhcCCCCccee
Confidence            99999999987654 344443 23445677766445 455566665 49999999        56788899999999999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEeCCCC-CceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1012 VGLSTADGYIACGSESNEVYAYHRSLP-MPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1012 v~~spdg~~lasgs~Dg~I~Iwd~~~~-~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      ++|+|++..||+||+|++|++||+-.. ..+.++               .+..-|..++|+|+|.-||++..||.|.+||
T Consensus       484 l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---------------~i~sdvl~vsfrPdG~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  484 LSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---------------EIRSDVLAVSFRPDGKELAVATLDGQITFFD  548 (893)
T ss_pred             eEEccccCeEEeccccceEEEEEeeccCceeeeE---------------eeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence            999999999999999999999996433 222222               2345699999999999999999999999998


Q ss_pred             c
Q 001366         1091 M 1091 (1092)
Q Consensus      1091 l 1091 (1092)
                      .
T Consensus       549 ~  549 (893)
T KOG0291|consen  549 I  549 (893)
T ss_pred             h
Confidence            6

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-29  Score=254.61  Aligned_cols=278  Identities=19%  Similarity=0.291  Sum_probs=234.5

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+..|..+|..+.|+-||+|.+|+|.|++|++|+...       ........+|...|..++.+.+ ...+++|+.|..|
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-------g~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v   83 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-------GALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAV   83 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccc-------cceeeeecCCCceeeecccccc-ccccccCCCCceE
Confidence            4668999999999999999999999999999999754       2334456679999999998887 7889999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC--ceeeeEe-cCCceEEEEEccCCCeEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK--NSLATIK-NIANVCCVQFSAHSSHLLA  930 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~--~~l~~l~-~~~~V~sl~fsp~~~~~la  930 (1092)
                      .+||+.+|+.++.|.+|...|+.|.|+. +...++|||.|.++++||.++.  ++++.+. ....|.++....   +.++
T Consensus        84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~---heIv  159 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE---HEIV  159 (307)
T ss_pred             EEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc---cEEE
Confidence            9999999999999999999999999998 8899999999999999999865  5677776 467899999874   5799


Q ss_pred             EEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCe
Q 001366          931 FGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009 (1092)
Q Consensus       931 tgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V 1009 (1092)
                      +|+.||+++.||+|.+... .  .--..+|++++|+ +++..+.++.|++|++.|-.        +++.+..++||.+.-
T Consensus       160 aGS~DGtvRtydiR~G~l~-s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~--------tGklL~sYkGhkn~e  228 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTLS-S--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE--------TGKLLKSYKGHKNME  228 (307)
T ss_pred             eeccCCcEEEEEeecceee-h--hhcCCcceeEEecCCCCEEEEeeccceeeecccc--------hhHHHHHhcccccce
Confidence            9999999999999988632 2  2235589999999 78889999999999999988        577888999998865


Q ss_pred             EE--EEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCC-EEEEEEeCCCCEEEEEecCCeE
Q 001366         1010 NF--VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLF-VSSVCWRRRSDMVVAANSSGCI 1086 (1092)
Q Consensus      1010 ~~--v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~-V~sva~spd~~~Lasgs~DG~V 1086 (1092)
                      +-  ++++.....+++||+||.|++||+.....+..++.              +... |.+++++|.-.-|++|... .+
T Consensus       229 ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~--------------~~~v~v~dl~~hp~~~~f~~A~~~-~~  293 (307)
T KOG0316|consen  229 YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV--------------VSTVIVTDLSCHPTMDDFITATGH-GD  293 (307)
T ss_pred             eeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc--------------CCceeEEeeecccCccceeEecCC-ce
Confidence            44  46666677999999999999999998888876653              2333 8999999988777777644 34


Q ss_pred             EEE
Q 001366         1087 KVL 1089 (1092)
Q Consensus      1087 ~vW 1089 (1092)
                      ..|
T Consensus       294 ~~~  296 (307)
T KOG0316|consen  294 LFW  296 (307)
T ss_pred             ece
Confidence            444

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-30  Score=299.82  Aligned_cols=252  Identities=20%  Similarity=0.231  Sum_probs=199.4

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccCC-CCCCCccccceecCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASNA-SPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  287 (1092)
                      .|.+...++  ..|+||+...    +..+...|+|+........  ....-.++.+.+.... |||++.+.+..-.....
T Consensus        36 ~Y~l~~~lG~G~Fg~v~~~~~----~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~  111 (382)
T KOG0032|consen   36 KYELGRELGRGQFGVVYLCRE----KSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSV  111 (382)
T ss_pred             cEEehhhhCCCCceEEEEEEe----cCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeE
Confidence            355555555  4799999998    3447777886654333322  2345556677788887 99999988887665544


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC--
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS--  365 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~--  365 (1092)
                      +                ++||+|.||.|.+.|... . .++..+..+++||+++|.|||++||+||||||+|||+...  
T Consensus       112 ~----------------lvmEL~~GGeLfd~i~~~-~-~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~  173 (382)
T KOG0032|consen  112 Y----------------LVMELCEGGELFDRIVKK-H-YSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDE  173 (382)
T ss_pred             E----------------EEEEecCCchHHHHHHHc-c-CCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccC
Confidence            4                389999999999999776 3 8888999999999999999999999999999999999744  


Q ss_pred             --CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCc
Q 001366          366 --NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANE  443 (1092)
Q Consensus       366 --~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1092)
                        +.+|++|||++.....                                                              
T Consensus       174 ~~~~ik~~DFGla~~~~~--------------------------------------------------------------  191 (382)
T KOG0032|consen  174 GSGRIKLIDFGLAKFIKP--------------------------------------------------------------  191 (382)
T ss_pred             CCCcEEEeeCCCceEccC--------------------------------------------------------------
Confidence              4799999999987541                                                              


Q ss_pred             cccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHH
Q 001366          444 SDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       444 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~  523 (1092)
                                                                ...+...+||+.|+|||++.+..|+..+||||+||++|
T Consensus       192 ------------------------------------------~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~y  229 (382)
T KOG0032|consen  192 ------------------------------------------GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILY  229 (382)
T ss_pred             ------------------------------------------CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHH
Confidence                                                      01233789999999999999999999999999999999


Q ss_pred             HHcCC---CCcHHHHHHHHHhccc--cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          524 ELFGR---FDSERALAAAMSDLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       524 ell~~---f~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      .|++|   |.+..........++.  ....+.|...+..+.+|+..||..||..|+|+.++|+|||+.+...
T Consensus       230 iLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~~~~~  301 (382)
T KOG0032|consen  230 ILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQHPWIKSIGE  301 (382)
T ss_pred             HHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcCccccCCcc
Confidence            99997   5444433333333333  3456778888999999999999999999999999999999987533

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=7.9e-31  Score=317.11  Aligned_cols=197  Identities=28%  Similarity=0.419  Sum_probs=163.0

Q ss_pred             cccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccccccc
Q 001366          305 RQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESAS  384 (1092)
Q Consensus       305 ~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~  384 (1092)
                      +.||||+-.+|++++......-...+.+++|+||++||.|+|++|||||||||.||+|++.+.|||.|||+|.....-..
T Consensus       673 IQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~  752 (1351)
T KOG1035|consen  673 IQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLE  752 (1351)
T ss_pred             EEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCceeeccCCcceeEEcCCCCeeecccccchhhhhhhh
Confidence            57999999999999987755435668999999999999999999999999999999999999999999999987441000


Q ss_pred             CCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccccccc
Q 001366          385 LDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTN  464 (1092)
Q Consensus       385 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  464 (1092)
                      .                .+..         ..+.++                                            
T Consensus       753 ~----------------~d~~---------~~~~~~--------------------------------------------  763 (1351)
T KOG1035|consen  753 S----------------IDQD---------LSFSTN--------------------------------------------  763 (1351)
T ss_pred             h----------------Hhhc---------cCcccc--------------------------------------------
Confidence            0                0000         000000                                            


Q ss_pred             CCCCCccCCCCCcccccccccccccccccccccccCcccccCC---CCCccccchhhhHHHHHHcCCCCcHHHHHHHHHh
Q 001366          465 AGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG---VCTTSSNIYSLGVLFFELFGRFDSERALAAAMSD  541 (1092)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~---~~t~~sDIwSLGvll~ell~~f~~~~~~~~~~~~  541 (1092)
                                      .........|+.+||.-|+|||++.+.   .|+.|+||||||||||||+.||.+.+++...+..
T Consensus       764 ----------------~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yPF~TsMERa~iL~~  827 (1351)
T KOG1035|consen  764 ----------------RAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYPFGTSMERASILTN  827 (1351)
T ss_pred             ----------------ccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhccCCchHHHHHHHHh
Confidence                            000112345688999999999999884   4999999999999999999999999999999999


Q ss_pred             ccccCCCCC---CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          542 LRDRILPPS---FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       542 ~~~~~~p~~---~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      ++...+|..   +....|.++.+|.|||..||.+||||.|+|+|+|+.
T Consensus       828 LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~llp  875 (1351)
T KOG1035|consen  828 LRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNSELLP  875 (1351)
T ss_pred             cccCCCCCCcccccccchHHHHHHHHHhcCCCccCCCHHHHhhccCCC
Confidence            998888877   777789999999999999999999999999999985

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=4.1e-31  Score=299.47  Aligned_cols=212  Identities=20%  Similarity=0.182  Sum_probs=181.1

Q ss_pred             hHhhhhhhhhhccCCCCCCCccccceecCCC-CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHH
Q 001366          256 AALKAAGAMMVASNASPKPVGVGTAVVSNGS-LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLY  333 (1092)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~  333 (1092)
                      ...+..+..++...+||||+...+..+-+.- ++                ++|+||+||+|.+.|+.. +..+++..+..
T Consensus        47 r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~----------------Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~  110 (426)
T KOG0589|consen   47 RRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLC----------------IVMEYCEGGDLAQLIKEQKGVLFPEERILK  110 (426)
T ss_pred             hHHHHHHHHHHHhccCCCeeeeccchhcCCceEE----------------EEEeecCCCCHHHHHHHHhhccccHHHHHH
Confidence            3467888889999999999987777665554 44                389999999999999654 47788889999


Q ss_pred             HHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchh
Q 001366          334 IFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAK  413 (1092)
Q Consensus       334 i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  413 (1092)
                      +|.||+.||.|||+++|+|||||+.||+++.++.||+.|||+|+.+..+.                              
T Consensus       111 ~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~------------------------------  160 (426)
T KOG0589|consen  111 WFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPED------------------------------  160 (426)
T ss_pred             HHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCch------------------------------
Confidence            99999999999999999999999999999999999999999999876211                              


Q ss_pred             hcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCccccccccccccccccc
Q 001366          414 KQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQL  493 (1092)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (1092)
                                                                                               ....+.+
T Consensus       161 -------------------------------------------------------------------------~~a~tvv  167 (426)
T KOG0589|consen  161 -------------------------------------------------------------------------SLASTVV  167 (426)
T ss_pred             -------------------------------------------------------------------------hhhheec
Confidence                                                                                     0112789


Q ss_pred             ccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCC
Q 001366          494 EEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEP  570 (1092)
Q Consensus       494 gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP  570 (1092)
                      ||+.||+||.+.+.+|+.|+|||||||++|||++-   |...+.....+++.+.. ..|.....+.+++.++..||..+|
T Consensus       168 GTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~-~~Plp~~ys~el~~lv~~~l~~~P  246 (426)
T KOG0589|consen  168 GTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGL-YSPLPSMYSSELRSLVKSMLRKNP  246 (426)
T ss_pred             CCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhhcc-CCCCCccccHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999983   77777666666666654 455556678999999999999999


Q ss_pred             CCCCCHHHHhhhhhhhh
Q 001366          571 LSRPTTREILQSEVTNE  587 (1092)
Q Consensus       571 ~~Rpsa~eiL~~~~~~~  587 (1092)
                      ..||++.++|.+|.+..
T Consensus       247 ~~RPsa~~LL~~P~l~~  263 (426)
T KOG0589|consen  247 EHRPSALELLRRPHLLR  263 (426)
T ss_pred             ccCCCHHHHhhChhhhh
Confidence            99999999999987754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2e-30  Score=273.68  Aligned_cols=277  Identities=17%  Similarity=0.345  Sum_probs=232.8

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEE
Q 001366          778 SANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWD  857 (1092)
Q Consensus       778 h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD  857 (1092)
                      ....|.|+.++  ...+++|..|++|+|||.+.       ..+.....+|.+.|.|+.|..   ..|+|||.|.||+|||
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~-------~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWD  263 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS-------LECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWD  263 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEecccc-------HHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEe
Confidence            45679999885  56899999999999999875       345556789999999999874   5999999999999999


Q ss_pred             CCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceee---eE-ecCCceEEEEEccCCCeEEEEEE
Q 001366          858 ACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLA---TI-KNIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       858 ~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~---~l-~~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      +++|+++.++-+|...|..+.|+.   .+++|+|.|.+|.+||+.+...+.   .+ .|.+.|+.+.|+.   .++++++
T Consensus       264 v~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsAS  337 (499)
T KOG0281|consen  264 VNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSAS  337 (499)
T ss_pred             ccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEec
Confidence            999999999999999999999974   689999999999999998765332   22 2678999999974   4999999


Q ss_pred             CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEE
Q 001366          934 ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVG 1013 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~ 1013 (1092)
                      .|.+|++|++.+.+ .+.++.+|+..|.|+.| .+.++++||+|++|++||+.        .+.|++.+.||+.-|.++.
T Consensus       338 gDRTikvW~~st~e-fvRtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwdi~--------~G~cLRvLeGHEeLvRciR  407 (499)
T KOG0281|consen  338 GDRTIKVWSTSTCE-FVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIE--------CGACLRVLEGHEELVRCIR  407 (499)
T ss_pred             CCceEEEEecccee-eehhhhcccccceehhc-cCeEEEecCCCceEEEEecc--------ccHHHHHHhchHHhhhhee
Confidence            99999999999876 46889999999999998 48899999999999999998        6889999999999999999


Q ss_pred             EecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1014 LSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1014 ~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |.  .+.|++|+.||+|+|||+..+..-....     ..........|.+.|..+.|.  ...+++++.|..|-||++
T Consensus       408 Fd--~krIVSGaYDGkikvWdl~aaldpra~~-----~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  408 FD--NKRIVSGAYDGKIKVWDLQAALDPRAPA-----STLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDF  476 (499)
T ss_pred             ec--CceeeeccccceEEEEecccccCCcccc-----cchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence            96  5689999999999999987654321110     001112345688889999886  457888899999999996

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.97  E-value=2.9e-30  Score=311.07  Aligned_cols=262  Identities=18%  Similarity=0.184  Sum_probs=187.6

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+...+  +|.|.||++...    ..+..++.|+...... ........++...+....|++++.......+......
T Consensus        33 rY~i~~~LG~G~fG~Vy~a~~~----~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         33 KYWISRVLGSGATGTVLCAKRV----SDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             CEEEEEEEecCCCEEEEEEEEc----CCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            35554444  478999999752    2245666666533222 2233445566677778899998875544333222110


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNAR---GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~---~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                       ....+       ...+|||+.||+|.++|+..   ...+++.++..|+.||+.||+|||++||+||||||+||||+.++
T Consensus       109 -~~~~~-------i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~  180 (496)
T PTZ00283        109 -ENVLM-------IALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNG  180 (496)
T ss_pred             -ccceE-------EEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCC
Confidence             00001       12479999999999999653   34577889999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++.+.....                                                              
T Consensus       181 ~vkL~DFGls~~~~~~~~--------------------------------------------------------------  198 (496)
T PTZ00283        181 LVKLGDFGFSKMYAATVS--------------------------------------------------------------  198 (496)
T ss_pred             CEEEEecccCeecccccc--------------------------------------------------------------
Confidence            999999999876441000                                                              


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                             .......+||+.|+|||++.+..++.++|||||||+||||+
T Consensus       199 ---------------------------------------~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLl  239 (496)
T PTZ00283        199 ---------------------------------------DDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELL  239 (496)
T ss_pred             ---------------------------------------ccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence                                                   00011457999999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ++   |............+ ....++.....++++.+|+.+||+++|.+||++.++|+|||+...
T Consensus       240 tG~~Pf~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~p~~~~~  303 (496)
T PTZ00283        240 TLKRPFDGENMEEVMHKTL-AGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNMPICKLF  303 (496)
T ss_pred             HCCCCCCCCCHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhCHHHHHh
Confidence            85   54433332222222 222333344567899999999999999999999999999998764

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.97  E-value=3.2e-31  Score=303.94  Aligned_cols=249  Identities=15%  Similarity=0.138  Sum_probs=185.2

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (1092)
                      .+..|.+.+.++  +.|.||++...+    .++.++.|+......  ........++..++...+|||++.++.....+.
T Consensus        16 ~~~~y~~~~~lg~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   91 (329)
T PTZ00263         16 KLSDFEMGETLGTGSFGRVRIAKHKG----TGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDEN   91 (329)
T ss_pred             CchheEEEEEEEecCCeEEEEEEECC----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCC
Confidence            345676666664  689999998632    245566655432211  112223445667788889999998776655433


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                      ..+                ++|||+.|++|.++|...+ .++...+..++.||+.||+|||++||+||||||+||||+.+
T Consensus        92 ~~~----------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~  154 (329)
T PTZ00263         92 RVY----------------FLLEFVVGGELFTHLRKAG-RFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNK  154 (329)
T ss_pred             EEE----------------EEEcCCCCChHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCC
Confidence            333                3899999999999998765 45666899999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++...+.                                                               
T Consensus       155 ~~~kl~Dfg~~~~~~~~---------------------------------------------------------------  171 (329)
T PTZ00263        155 GHVKVTDFGFAKKVPDR---------------------------------------------------------------  171 (329)
T ss_pred             CCEEEeeccCceEcCCC---------------------------------------------------------------
Confidence            99999999988653210                                                               


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                                                                 .....||+.|+|||++.+..++.++|||||||+||||
T Consensus       172 -------------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  208 (329)
T PTZ00263        172 -------------------------------------------TFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEF  208 (329)
T ss_pred             -------------------------------------------cceecCChhhcCHHHHcCCCCCCcceeechHHHHHHH
Confidence                                                       0034689999999999998899999999999999999


Q ss_pred             cCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhh
Q 001366          526 FGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNE  587 (1092)
Q Consensus       526 l~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~  587 (1092)
                      +++   |...................|  ...++.+.+||.+||++||.+||+     +++|+.||||..
T Consensus       209 ltg~~pf~~~~~~~~~~~i~~~~~~~p--~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~  276 (329)
T PTZ00263        209 IAGYPPFFDDTPFRIYEKILAGRLKFP--NWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHG  276 (329)
T ss_pred             HcCCCCCCCCCHHHHHHHHhcCCcCCC--CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCC
Confidence            986   433333222222222221112  224678899999999999999997     799999999976

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.2e-31  Score=299.79  Aligned_cols=243  Identities=17%  Similarity=0.149  Sum_probs=179.2

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...+    .+..++.|+.....  .........++..++....||||+.+......+...+         
T Consensus         3 ~G~~g~Vy~~~~~~----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~---------   69 (312)
T cd05585           3 KGSFGKVMQVRKRD----TQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLY---------   69 (312)
T ss_pred             cCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEE---------
Confidence            46889999988633    24445555442211  1122333455667788889999998665544322222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||+.|++|.+++...+ .++..++..++.||+.||+|||++||+||||||+|||++.++.+|++|||+++
T Consensus        70 -------lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~  141 (312)
T cd05585          70 -------LVLAFINGGELFHHLQREG-RFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCK  141 (312)
T ss_pred             -------EEEcCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccc
Confidence                   3899999999999997754 46777999999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       142 ~~~~~~--------------------------------------------------------------------------  147 (312)
T cd05585         142 LNMKDD--------------------------------------------------------------------------  147 (312)
T ss_pred             cCccCC--------------------------------------------------------------------------
Confidence            522000                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                   ......+||+.|+|||++.+..++.++|||||||+||||++|   |.....
T Consensus       148 -----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~  198 (312)
T cd05585         148 -----------------------------DKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENV  198 (312)
T ss_pred             -----------------------------CccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCH
Confidence                                         001145789999999999999999999999999999999986   433332


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC---CHHHHhhhhhhhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP---TTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp---sa~eiL~~~~~~~~  588 (1092)
                      .......+....  ......++.+.+|+.+||.+||.+||   ++.++|.||||...
T Consensus       199 ~~~~~~~~~~~~--~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~hp~~~~~  253 (312)
T cd05585         199 NEMYRKILQEPL--RFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQL  253 (312)
T ss_pred             HHHHHHHHcCCC--CCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcCCCcCCC
Confidence            222222222221  11234578899999999999999997   57999999999763

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.97  E-value=1e-30  Score=274.25  Aligned_cols=248  Identities=21%  Similarity=0.260  Sum_probs=183.4

Q ss_pred             HhhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          216 VKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       216 ~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      +-....||.++|.-..      +|+.-|.|+..    +++. .+-.++--...+.||||+.+++.  |.....     ++
T Consensus        70 LG~GinGkV~~C~~k~------T~ekfALKvL~----Ds~K-ARrEVeLHw~~s~h~~iV~IidV--yeNs~~-----~r  131 (400)
T KOG0604|consen   70 LGAGINGKVVQCVHKR------TQEKFALKVLL----DSPK-ARREVELHWMASGHPHIVSIIDV--YENSYQ-----GR  131 (400)
T ss_pred             hccccCCceEEEEecc------chhhhHHHHHh----cCHH-HHhHhhhhhhhcCCCceEEeehh--hhhhcc-----Cc
Confidence            3444557777777665      35555555552    2221 12222333667799999987665  222221     22


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc---cCCcEEEe
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGH-KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL---QSNQVKYI  371 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~-~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~---~~~~vkl~  371 (1092)
                      .+     -+++||.++||.|...|..++. .+++.++-.|++||..||.|||+.+|+||||||+|+|..   ++..+|++
T Consensus       132 kc-----LLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLt  206 (400)
T KOG0604|consen  132 KC-----LLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLT  206 (400)
T ss_pred             ee-----eEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEec
Confidence            22     2468999999999999977654 578889999999999999999999999999999999997   44669999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||.|+...++                                                                     
T Consensus       207 DfGFAK~t~~~---------------------------------------------------------------------  217 (400)
T KOG0604|consen  207 DFGFAKETQEP---------------------------------------------------------------------  217 (400)
T ss_pred             ccccccccCCC---------------------------------------------------------------------
Confidence            99999874411                                                                     


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCc
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDS  531 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~  531 (1092)
                                                         ..+.+.+-||+|.|||++...+|+.++|+|||||++|-|||||++
T Consensus       218 -----------------------------------~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPP  262 (400)
T KOG0604|consen  218 -----------------------------------GDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPP  262 (400)
T ss_pred             -----------------------------------ccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCc
Confidence                                               113366789999999999989999999999999999999998766


Q ss_pred             HHH-HHHH----HH-hcc---ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          532 ERA-LAAA----MS-DLR---DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       532 ~~~-~~~~----~~-~~~---~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      +.. +-..    |+ .++   .....|.+...+....++|+.||.-+|++|.|+.+++.|||++....
T Consensus       263 FYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~~~~  330 (400)
T KOG0604|consen  263 FYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDHPWINQYEA  330 (400)
T ss_pred             ccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcCchhccccc
Confidence            531 1111    11 111   11223567777888899999999999999999999999999987643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.3e-29  Score=287.49  Aligned_cols=340  Identities=19%  Similarity=0.198  Sum_probs=269.9

Q ss_pred             hhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKI  803 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I  803 (1092)
                      ..+++|.+.+.++.+...+...-..++..|+++++|++..-..    ..+....|.+.|++++|.+|+..++++|.|+.+
T Consensus       141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi  216 (775)
T KOG0319|consen  141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVI  216 (775)
T ss_pred             EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch----HHHHHHhhhhheeeeeeccCCceEEEeccCcEE
Confidence            4578888888887765555443345777999999999874222    223466899999999999999999999999999


Q ss_pred             EEEEcCCCCC-----------------C----------------------------------C----ccc----------
Q 001366          804 KIFEFNALFN-----------------D----------------------------------S----VDV----------  818 (1092)
Q Consensus       804 ~Iwd~~~~~~-----------------~----------------------------------~----~~~----------  818 (1092)
                      .|||+.....                 +                                  .    .+.          
T Consensus       217 ~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~  296 (775)
T KOG0319|consen  217 IVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQL  296 (775)
T ss_pred             EEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCce
Confidence            9998642100                 0                                  0    000          


Q ss_pred             -----------------ccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEec
Q 001366          819 -----------------YYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ  881 (1092)
Q Consensus       819 -----------------~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp  881 (1092)
                                       .......+....|.+++|-....++||.++..+.+|++++.+..+. .+.+|+..|.+++...
T Consensus       297 l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~  375 (775)
T KOG0319|consen  297 LLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWS  375 (775)
T ss_pred             EEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecc
Confidence                             0000011223457788865444789999999999999998877666 8889999999999444


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCce----eeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc----ceE-
Q 001366          882 VHPTKLASGSDDCSVKLWNINEKNS----LATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA----PWC-  951 (1092)
Q Consensus       882 ~~~~~laSgs~Dg~I~iWDl~~~~~----l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~----~~~-  951 (1092)
                       .+.+|+|||.|+++++|.++.+..    +.... |...|.+|+++..+..+|+++|.|+++++|++...+.    ... 
T Consensus       376 -~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~  454 (775)
T KOG0319|consen  376 -SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT  454 (775)
T ss_pred             -cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence             567999999999999998854432    22222 6778999999888888999999999999999987321    111 


Q ss_pred             ---EecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecC
Q 001366          952 ---VLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSES 1027 (1092)
Q Consensus       952 ---~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D 1027 (1092)
                         +...|.+.|.+|+.+ ++..++|||.|.+.+||++.        ......++.||+..|++|.|+|.++.+|++|.|
T Consensus       455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le--------~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD  526 (775)
T KOG0319|consen  455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE--------QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGD  526 (775)
T ss_pred             hhHHHHhhcccccceEecCCCceEEecccccceeeeccc--------CceEEEEeeCCccceEEEEeccccceeEeccCC
Confidence               346799999999999 66788999999999999998        456788999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1028 NEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1028 g~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++|+||.+++..++.++              .+|...|..+.|-.++..|++|++||.|++|++
T Consensus       527 ~TvKIW~is~fSClkT~--------------eGH~~aVlra~F~~~~~qliS~~adGliKlWni  576 (775)
T KOG0319|consen  527 KTVKIWSISTFSCLKTF--------------EGHTSAVLRASFIRNGKQLISAGADGLIKLWNI  576 (775)
T ss_pred             ceEEEEEeccceeeeee--------------cCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence            99999999988877765              588999999999999999999999999999986

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.97  E-value=8.5e-31  Score=296.59  Aligned_cols=244  Identities=16%  Similarity=0.208  Sum_probs=173.3

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      ++.|.||++...    ..+..++.|+..............++...++..+|||++.+.+....+...+            
T Consensus        16 G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~------------   79 (303)
T cd07869          16 GSYATVYKGKSK----VNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLT------------   79 (303)
T ss_pred             cCCEEEEEEEEC----CCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEE------------
Confidence            367999999873    2245556655432222222334456777788889999997665544332222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          .+|||+. ++|.+++......++..++..++.||+.||+|||++||+||||||+|||++.++.+|++|||+++...
T Consensus        80 ----lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~  154 (303)
T cd07869          80 ----LVFEYVH-TDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKS  154 (303)
T ss_pred             ----EEEECCC-cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceecc
Confidence                3799985 68888887665567777999999999999999999999999999999999999999999999886532


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ..                                                                              
T Consensus       155 ~~------------------------------------------------------------------------------  156 (303)
T cd07869         155 VP------------------------------------------------------------------------------  156 (303)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERALA  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~~  536 (1092)
                                               ........||++|+|||++.+ ..++.++|||||||+||||++|   |.+.....
T Consensus       157 -------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~  211 (303)
T cd07869         157 -------------------------SHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQ  211 (303)
T ss_pred             -------------------------CccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHH
Confidence                                     000113467899999999876 4589999999999999999986   44322211


Q ss_pred             HH----HHhcccc-------------CCCCCC--------------CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          537 AA----MSDLRDR-------------ILPPSF--------------LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       537 ~~----~~~~~~~-------------~~p~~~--------------~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ..    ...+...             ..+..+              ...++.+.+|+.+||++||.+|||+.|+|+||||
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h~~f  291 (303)
T cd07869         212 DQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYF  291 (303)
T ss_pred             HHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhcCccc
Confidence            11    1110000             000000              1123567899999999999999999999999999


Q ss_pred             hhh
Q 001366          586 NEF  588 (1092)
Q Consensus       586 ~~~  588 (1092)
                      ...
T Consensus       292 ~~~  294 (303)
T cd07869         292 SDL  294 (303)
T ss_pred             ccC
Confidence            875

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=6.9e-31  Score=295.74  Aligned_cols=249  Identities=14%  Similarity=0.149  Sum_probs=184.2

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      +.|...|+  .+|.|||+...    +..-.++.|+.-......-....+ +.-+|+...||+|+.++.+.-|+..+.   
T Consensus        34 WeIiGELGDGAFGKVyKA~nk----et~~lAAaKvIetkseEELEDylV-EIeILa~CdHP~ivkLl~ayy~enkLw---  105 (1187)
T KOG0579|consen   34 WEIIGELGDGAFGKVYKAVNK----ETKLLAAAKVIETKSEEELEDYLV-EIEILAECDHPVIVKLLSAYYFENKLW---  105 (1187)
T ss_pred             HHHHhhhcCccchhhhhhhcc----cchhhhhhhhhcccchhHHhhhhh-hhhhhhcCCChHHHHHHHHHhccCceE---
Confidence            34455554  58999999984    323333444432222211111122 234678889999998877755544444   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+.|||.||-....+-.-++.+.+.++..+++|+|+||.|||+++|||||||..|||++-+|.|+++
T Consensus       106 -------------iliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLA  172 (1187)
T KOG0579|consen  106 -------------ILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLA  172 (1187)
T ss_pred             -------------EEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeee
Confidence                         4899999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||++-.....                                                                     
T Consensus       173 DFGVSAKn~~t---------------------------------------------------------------------  183 (1187)
T KOG0579|consen  173 DFGVSAKNKST---------------------------------------------------------------------  183 (1187)
T ss_pred             cccccccchhH---------------------------------------------------------------------
Confidence            99987542200                                                                     


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----CCCCccccchhhhHHHHHHc
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----GVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----~~~t~~sDIwSLGvll~ell  526 (1092)
                                                        ...-.+++|||+|||||+...     .+|++++||||||++|.||.
T Consensus       184 ----------------------------------~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMA  229 (1187)
T KOG0579|consen  184 ----------------------------------RQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMA  229 (1187)
T ss_pred             ----------------------------------HhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHh
Confidence                                              000116799999999999764     78999999999999999999


Q ss_pred             CCCCcHHH---HHHHHHhccccCCCCCCC---CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GRFDSERA---LAAAMSDLRDRILPPSFL---SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~f~~~~~---~~~~~~~~~~~~~p~~~~---~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      -.-++..+   ...+++..+.  -||.++   ..+..+.+|+.+||.+||..||++++||+|||+...
T Consensus       230 qiEPPHhelnpMRVllKiaKS--ePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~Hpfv~~~  295 (1187)
T KOG0579|consen  230 QIEPPHHELNPMRVLLKIAKS--EPPTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKHPFVQNA  295 (1187)
T ss_pred             ccCCCccccchHHHHHHHhhc--CCCcccCcchhhhHHHHHHHHHHhcCCccCCCHHHHhhCcccccC
Confidence            75333332   2222333222  233332   335779999999999999999999999999999764

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.97  E-value=1.1e-30  Score=298.78  Aligned_cols=242  Identities=15%  Similarity=0.160  Sum_probs=179.5

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++....    .+..++.|+......  ........++..++...+|||++.+......+...+         
T Consensus         5 ~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~---------   71 (323)
T cd05595           5 KGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC---------   71 (323)
T ss_pred             eCCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEE---------
Confidence            46789999887522    244555555422211  112223345667788889999998776655444333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||++|++|.+++...+ .+++..++.++.||+.||+|||++||+||||||+|||++.++.+|++|||+++
T Consensus        72 -------lv~E~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~  143 (323)
T cd05595          72 -------FVMEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCK  143 (323)
T ss_pred             -------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhc
Confidence                   3899999999999997654 56777999999999999999999999999999999999999999999999876


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .....                                                                           
T Consensus       144 ~~~~~---------------------------------------------------------------------------  148 (323)
T cd05595         144 EGISD---------------------------------------------------------------------------  148 (323)
T ss_pred             cccCC---------------------------------------------------------------------------
Confidence            52200                                                                           


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                  ........||+.|+|||.+.+..++.++|||||||+||||+++   |.....
T Consensus       149 ----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~  200 (323)
T cd05595         149 ----------------------------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  200 (323)
T ss_pred             ----------------------------CCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCH
Confidence                                        0001135689999999999999999999999999999999986   433322


Q ss_pred             HHHHHHhcccc-CCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          535 LAAAMSDLRDR-ILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~~~-~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      ........... .+|.   ..++.+.+|+.+||.+||.+||     ++.++++|+||...
T Consensus       201 ~~~~~~~~~~~~~~p~---~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~~  257 (323)
T cd05595         201 ERLFELILMEEIRFPR---TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSI  257 (323)
T ss_pred             HHHHHHHhcCCCCCCC---CCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcCCCcCCC
Confidence            22222222221 2222   3478899999999999999998     89999999999764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.97  E-value=1.3e-30  Score=298.65  Aligned_cols=242  Identities=15%  Similarity=0.133  Sum_probs=179.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++....    .+..++.|+......  ........++..++....|||++.+......+...+         
T Consensus         5 ~G~~g~Vy~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~---------   71 (328)
T cd05593           5 KGTFGKVILVREKA----SGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLC---------   71 (328)
T ss_pred             eCCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEE---------
Confidence            46789999887522    245556655432211  112233455667788889999998766554433333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus        72 -------lv~Ey~~~g~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~  143 (328)
T cd05593          72 -------FVMEYVNGGELFFHLSRER-VFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCK  143 (328)
T ss_pred             -------EEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCc
Confidence                   3899999999999997654 57777999999999999999999999999999999999999999999999876


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .....                                                                           
T Consensus       144 ~~~~~---------------------------------------------------------------------------  148 (328)
T cd05593         144 EGITD---------------------------------------------------------------------------  148 (328)
T ss_pred             cCCCc---------------------------------------------------------------------------
Confidence            52200                                                                           


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                  .......+||+.|+|||.+.+..++.++|||||||+||||+++   |.....
T Consensus       149 ----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~  200 (328)
T cd05593         149 ----------------------------AATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  200 (328)
T ss_pred             ----------------------------ccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH
Confidence                                        0001135689999999999998999999999999999999986   433322


Q ss_pred             HHHHHHhcccc-CCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          535 LAAAMSDLRDR-ILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~~~-~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      ........... .+|   ...++++.+|+.+||.+||.+||     ++.+|++||||...
T Consensus       201 ~~~~~~~~~~~~~~p---~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~  257 (328)
T cd05593         201 EKLFELILMEDIKFP---RTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGV  257 (328)
T ss_pred             HHHHHHhccCCccCC---CCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence            22222222221 222   24578899999999999999997     89999999999763

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=9.7e-31  Score=294.49  Aligned_cols=239  Identities=13%  Similarity=0.092  Sum_probs=176.5

Q ss_pred             cccceeeeCCCCCccccccccccccccccccC-ch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ++.|.||++....    .++.++.|+...... .. ......++..++...+|||++.++.....+...+          
T Consensus        12 G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~----------   77 (291)
T cd05612          12 GTFGRVHLVRDRI----SEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLY----------   77 (291)
T ss_pred             CCCeEEEEEEEcC----CCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEE----------
Confidence            4679999998632    244555555422111 11 1222344566788889999998665433222222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+|||+.|++|.+++...+ .++...++.++.||+.||+|||++||+||||||+|||++.++.+|++|||+++.
T Consensus        78 ------lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~  150 (291)
T cd05612          78 ------MLMEYVPGGELFSYLRNSG-RFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKK  150 (291)
T ss_pred             ------EEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchh
Confidence                  3899999999999997765 467778999999999999999999999999999999999999999999998765


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ....                                                                            
T Consensus       151 ~~~~----------------------------------------------------------------------------  154 (291)
T cd05612         151 LRDR----------------------------------------------------------------------------  154 (291)
T ss_pred             ccCC----------------------------------------------------------------------------
Confidence            3310                                                                            


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                    ....+||+.|+|||++.+..++.++|||||||+||||+++   |......
T Consensus       155 ------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~  204 (291)
T cd05612         155 ------------------------------TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPF  204 (291)
T ss_pred             ------------------------------cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                          0034688999999999998899999999999999999986   4443332


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      .............  ....++.+.+|+.+||..||.+||+     +.++++||||...
T Consensus       205 ~~~~~i~~~~~~~--~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~  260 (291)
T cd05612         205 GIYEKILAGKLEF--PRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSV  260 (291)
T ss_pred             HHHHHHHhCCcCC--CccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCccccCC
Confidence            2222222222211  1233788999999999999999995     9999999999764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.97  E-value=1.4e-30  Score=297.52  Aligned_cols=243  Identities=16%  Similarity=0.144  Sum_probs=177.5

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhcc-CCCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVAS-NASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .++.|.||++...+    .+..++.|+.....  ..........+..++.. ..||+++.++.........+        
T Consensus         5 ~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~--------   72 (320)
T cd05590           5 KGSFGKVMLARLKE----SGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLF--------   72 (320)
T ss_pred             eCCCeEEEEEEEcC----CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEE--------
Confidence            46789999997632    24455665542211  11122333344444443 47999998766644333333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              ++|||++|++|.+++...+ .++...++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++
T Consensus        73 --------iv~Ey~~~g~L~~~i~~~~-~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~  143 (320)
T cd05590          73 --------FVMEFVNGGDLMFHIQKSR-RFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMC  143 (320)
T ss_pred             --------EEEcCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCC
Confidence                    3899999999999997664 4777799999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       144 ~~~~~~--------------------------------------------------------------------------  149 (320)
T cd05590         144 KEGIFN--------------------------------------------------------------------------  149 (320)
T ss_pred             eecCcC--------------------------------------------------------------------------
Confidence            652200                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                   ........||+.|+|||++.+..++.++|||||||++|||+++   |....
T Consensus       150 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~  200 (320)
T cd05590         150 -----------------------------GKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAEN  200 (320)
T ss_pred             -----------------------------CCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCC
Confidence                                         0001135689999999999998999999999999999999986   44443


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH------HHHhhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT------REILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa------~eiL~~~~~~~~  588 (1092)
                      ...............|  ...++.+.+|+.+||++||.+||++      .+++.||||...
T Consensus       201 ~~~~~~~i~~~~~~~~--~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~  259 (320)
T cd05590         201 EDDLFEAILNDEVVYP--TWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKEL  259 (320)
T ss_pred             HHHHHHHHhcCCCCCC--CCCCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcCCC
Confidence            3333333333322222  2357889999999999999999998      999999999763

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.97  E-value=2.2e-30  Score=299.86  Aligned_cols=252  Identities=17%  Similarity=0.156  Sum_probs=181.8

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      .|.+|.+.+.++  |.|.||++...    ..+..++.|+..............++..++...+|+|++.+++....+...
T Consensus        72 ~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  147 (353)
T PLN00034         72 SLSELERVNRIGSGAGGTVYKVIHR----PTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEI  147 (353)
T ss_pred             CHHHHhhhhhccCCCCeEEEEEEEC----CCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeE
Confidence            566676655554  78999999752    224556666653332222233445667778888999999876654333222


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      +                .+|||++|++|.+..     ...+..+..+++||+.||+|||++||+||||||+|||++.++.
T Consensus       148 ~----------------lv~e~~~~~~L~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~  206 (353)
T PLN00034        148 Q----------------VLLEFMDGGSLEGTH-----IADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKN  206 (353)
T ss_pred             E----------------EEEecCCCCcccccc-----cCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCC
Confidence            2                389999999997532     3456678899999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||+++.+....                                                                
T Consensus       207 ~kL~DfG~~~~~~~~~----------------------------------------------------------------  222 (353)
T PLN00034        207 VKIADFGVSRILAQTM----------------------------------------------------------------  222 (353)
T ss_pred             EEEcccccceeccccc----------------------------------------------------------------
Confidence            9999999887643100                                                                


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----CCCCccccchhhhHHH
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----GVCTTSSNIYSLGVLF  522 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----~~~t~~sDIwSLGvll  522 (1092)
                                                             ......+||..|+|||.+..     ...+.++|||||||+|
T Consensus       223 ---------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil  263 (353)
T PLN00034        223 ---------------------------------------DPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSI  263 (353)
T ss_pred             ---------------------------------------ccccccccCccccCccccccccccCcCCCcchhHHHHHHHH
Confidence                                                   00113468999999998853     2346799999999999


Q ss_pred             HHHcCC---CCc--HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          523 FELFGR---FDS--ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       523 ~ell~~---f~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      |||+++   |..  ..+....+..+.....+......++++.+||.+||+.||++||++.|||+||||....
T Consensus       264 ~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~hp~~~~~~  335 (353)
T PLN00034        264 LEFYLGRFPFGVGRQGDWASLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQHPFILRAQ  335 (353)
T ss_pred             HHHHhCCCCCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcCcccccCC
Confidence            999986   431  1122222333333333334445678899999999999999999999999999998753

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.7e-29  Score=258.24  Aligned_cols=244  Identities=24%  Similarity=0.423  Sum_probs=214.1

Q ss_pred             CCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          778 SANVICSISFDRD-EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       778 h~~~V~sl~fspd-g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      -.+.++.++|+++ .+.+++++.||+++|||....      .......+.|...|.++.|++..+..++++|+|++|+||
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW  132 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW  132 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCC------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence            4668899999986 458889999999999996531      122334567999999999999878899999999999999


Q ss_pred             ECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECC
Q 001366          857 DACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSAD  935 (1092)
Q Consensus       857 D~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~D  935 (1092)
                      +....+.+.+|.+|...|....|+|..+++++++|.|+++++||++.......+. |...+.|+.|+....++++||+.|
T Consensus       133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd  212 (311)
T KOG0277|consen  133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVD  212 (311)
T ss_pred             cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCC
Confidence            9999999999999999999999999999999999999999999998654433455 667999999999888999999999


Q ss_pred             CeEEEEEcCCCCcceEEecCCCCCeEEEEEcC--CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEE
Q 001366          936 YRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD--SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVG 1013 (1092)
Q Consensus       936 g~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~--~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~ 1013 (1092)
                      +.|++||+|+.+.++..+.+|.-+|+.|+|+|  ...|+|++.|-+++|||....       ..++.++..|+.-+..+.
T Consensus       213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~-------ds~~e~~~~HtEFv~g~D  285 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ-------DSAIETVDHHTEFVCGLD  285 (311)
T ss_pred             ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc-------hhhhhhhhccceEEeccc
Confidence            99999999999999999999999999999984  457999999999999998743       345667778999999999


Q ss_pred             EecC-CCEEEEEecCCcEEEEe
Q 001366         1014 LSTA-DGYIACGSESNEVYAYH 1034 (1092)
Q Consensus      1014 ~spd-g~~lasgs~Dg~I~Iwd 1034 (1092)
                      ||+. +.++|+++.|..++||+
T Consensus       286 ws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  286 WSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             cccccCceeeecccccceeeec
Confidence            9985 67999999999999997

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=2.1e-30  Score=303.71  Aligned_cols=248  Identities=15%  Similarity=0.097  Sum_probs=175.9

Q ss_pred             HHHhhh--ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTT--LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~--~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.  .+|.|+||++....    .++.++.|+.       ......++..++...+||||+.+.+...++...+   
T Consensus        94 y~~~~~lg~G~~g~V~~~~d~~----~~~~vaiK~~-------~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~---  159 (391)
T PHA03212         94 FSILETFTPGAEGFAFACIDNK----TCEHVVIKAG-------QRGGTATEAHILRAINHPSIIQLKGTFTYNKFTC---  159 (391)
T ss_pred             cEEEEEEcCCCCeEEEEEEECC----CCCEEEEech-------hhhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeE---
Confidence            444443  34789999997632    3444555432       1122356677888999999999877655443333   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+|+++. ++|.+++.... .++..+++.|++||+.||+|||++||+||||||+|||++..+.+||+
T Consensus       160 -------------lv~e~~~-~~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~  224 (391)
T PHA03212        160 -------------LILPRYK-TDLYCYLAAKR-NIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLG  224 (391)
T ss_pred             -------------EEEecCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEE
Confidence                         2677774 78999987654 46777899999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++......                                                                    
T Consensus       225 DFG~a~~~~~~~--------------------------------------------------------------------  236 (391)
T PHA03212        225 DFGAACFPVDIN--------------------------------------------------------------------  236 (391)
T ss_pred             eCCccccccccc--------------------------------------------------------------------
Confidence            999886432100                                                                    


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCc
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDS  531 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~  531 (1092)
                                                        .......+||+.|+|||++.+..++.++|||||||+||||+++..+
T Consensus       237 ----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p  282 (391)
T PHA03212        237 ----------------------------------ANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDS  282 (391)
T ss_pred             ----------------------------------ccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence                                              0001145799999999999999999999999999999999986211


Q ss_pred             ---H----------HHHHHHHHhc----------------------cc--cCCCC------CCCCCChhHHHHHHhcccc
Q 001366          532 ---E----------RALAAAMSDL----------------------RD--RILPP------SFLSENPKEAGFCLWQLHP  568 (1092)
Q Consensus       532 ---~----------~~~~~~~~~~----------------------~~--~~~p~------~~~~~~~~~~~li~~lL~~  568 (1092)
                         .          ......+..+                      ..  ...|.      .....+.++.+|+.+||++
T Consensus       283 ~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~  362 (391)
T PHA03212        283 LFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAF  362 (391)
T ss_pred             cCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcC
Confidence               0          0111111000                      00  00000      0112345678999999999


Q ss_pred             CCCCCCCHHHHhhhhhhhhhhccc
Q 001366          569 EPLSRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       569 dP~~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                      ||.+|||+.|+|+||||.....+.
T Consensus       363 dP~~Rpta~elL~hp~f~~~~~~~  386 (391)
T PHA03212        363 DAHHRPSAEALLDFAAFQDIPDPY  386 (391)
T ss_pred             ChhhCCCHHHHhcChhhccCCCCC
Confidence            999999999999999998765443

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.4e-30  Score=269.44  Aligned_cols=206  Identities=15%  Similarity=0.150  Sum_probs=168.7

Q ss_pred             hhhhhccC-CCCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 001366          262 GAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVA  340 (1092)
Q Consensus       262 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~  340 (1092)
                      +...++.. -||+|+.+.+.-.++....                .+.+.|.-|.|.|+|...- .+++++.+.|++||++
T Consensus        72 Ev~ILRqv~GHP~II~l~D~yes~sF~F----------------lVFdl~prGELFDyLts~V-tlSEK~tR~iMrqlfe  134 (411)
T KOG0599|consen   72 EISILRQVMGHPYIIDLQDVYESDAFVF----------------LVFDLMPRGELFDYLTSKV-TLSEKETRRIMRQLFE  134 (411)
T ss_pred             HHHHHHHhcCCCcEEEeeeeccCcchhh----------------hhhhhcccchHHHHhhhhe-eecHHHHHHHHHHHHH
Confidence            33445544 8999998877755555544                2678899999999998764 4667799999999999


Q ss_pred             HHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccC
Q 001366          341 LVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHN  420 (1092)
Q Consensus       341 ~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (1092)
                      ||+|+|.++||||||||+|||++++.++||+|||.+..+..                                       
T Consensus       135 gVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~---------------------------------------  175 (411)
T KOG0599|consen  135 GVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQLEP---------------------------------------  175 (411)
T ss_pred             HHHHHHHhhhhhcccChhheeeccccceEEeccceeeccCC---------------------------------------
Confidence            99999999999999999999999999999999999877541                                       


Q ss_pred             cccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccC
Q 001366          421 MNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYAS  500 (1092)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~a  500 (1092)
                                                                                       -..+...||||.|.|
T Consensus       176 -----------------------------------------------------------------GekLrelCGTPgYLA  190 (411)
T KOG0599|consen  176 -----------------------------------------------------------------GEKLRELCGTPGYLA  190 (411)
T ss_pred             -----------------------------------------------------------------chhHHHhcCCCcccC
Confidence                                                                             123447899999999


Q ss_pred             cccccC------CCCCccccchhhhHHHHHHcCCCCcHHHHHHHHH--hc---cccCCCCCCCCCChhHHHHHHhccccC
Q 001366          501 PEELSG------GVCTTSSNIYSLGVLFFELFGRFDSERALAAAMS--DL---RDRILPPSFLSENPKEAGFCLWQLHPE  569 (1092)
Q Consensus       501 PE~l~~------~~~t~~sDIwSLGvll~ell~~f~~~~~~~~~~~--~~---~~~~~p~~~~~~~~~~~~li~~lL~~d  569 (1092)
                      ||.+..      ..|+..+|+||+|||+|.||.|.+++-+..+.+.  .+   +...-.|.+.+.+....+||.+||+.|
T Consensus       191 PEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVd  270 (411)
T KOG0599|consen  191 PETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVD  270 (411)
T ss_pred             hhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcchhhccccHHHHHHHHHeeC
Confidence            999864      3488999999999999999998777665555432  12   223345788888899999999999999


Q ss_pred             CCCCCCHHHHhhhhhhhhh
Q 001366          570 PLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       570 P~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |.+|.|+.|+|.||||...
T Consensus       271 p~~Ritake~LaHpff~q~  289 (411)
T KOG0599|consen  271 PTKRITAKEALAHPFFIQI  289 (411)
T ss_pred             chhcccHHHHhcChHHHHH
Confidence            9999999999999999764

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.97  E-value=4e-30  Score=309.35  Aligned_cols=253  Identities=19%  Similarity=0.157  Sum_probs=186.7

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+...+  +|.|+||++....  .. +..++.|.. ..+.........++..++....||||+.+++....+...+   
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~--~~-~~~vv~K~~-~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~---  141 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGS--DP-KEKVVAKFV-MLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLL---  141 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcC--CC-CeEEEEEEc-ccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEE---
Confidence            5555554  4789999997632  11 233344322 2222223334455777888999999999887766544444   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNAR---GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~---~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                   ++|||++||+|.++|...   ...++..++..++.||+.||+|||++||+||||||+|||++.++.+
T Consensus       142 -------------lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~  208 (478)
T PTZ00267        142 -------------LIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGII  208 (478)
T ss_pred             -------------EEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcE
Confidence                         389999999999988542   3357788999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.+.....                                                                
T Consensus       209 kL~DFgla~~~~~~~~----------------------------------------------------------------  224 (478)
T PTZ00267        209 KLGDFGFSKQYSDSVS----------------------------------------------------------------  224 (478)
T ss_pred             EEEeCcCceecCCccc----------------------------------------------------------------
Confidence            9999999876431000                                                                


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                           .......+||+.|+|||++.+..++.++|||||||+||||+++
T Consensus       225 -------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg  267 (478)
T PTZ00267        225 -------------------------------------LDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTL  267 (478)
T ss_pred             -------------------------------------cccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhC
Confidence                                                 0001145799999999999999999999999999999999986


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                         |........ +..+.....++.....++.+.+|+.+||+++|.+||++.++|.|+|+...
T Consensus       268 ~~Pf~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~~~~~~~~  329 (478)
T PTZ00267        268 HRPFKGPSQREI-MQQVLYGKYDPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLHTEFLKYV  329 (478)
T ss_pred             CCCCCCCCHHHH-HHHHHhCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHhCHHHHHH
Confidence               443333222 22222222333334567889999999999999999999999999999653

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=4.3e-30  Score=295.03  Aligned_cols=253  Identities=17%  Similarity=0.239  Sum_probs=177.9

Q ss_pred             cccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||+|....    .+..++.|+.... ....+.....++..++...+|||++.+...........      .    
T Consensus        11 G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~------~----   76 (338)
T cd07859          11 GSYGVVCSAIDTH----TGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRRE------F----   76 (338)
T ss_pred             cCCeEEEEEEECC----CCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCC------C----
Confidence            5789999998632    2445555543211 11223334456777888899999998766543222111      0    


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                       ...-++||||. ++|.+++...+ .++...++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        77 -~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~  153 (338)
T cd07859          77 -KDIYVVFELME-SDLHQVIKAND-DLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVA  153 (338)
T ss_pred             -ceEEEEEecCC-CCHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCcccccc
Confidence             00124799995 68999997654 4777799999999999999999999999999999999999999999999998754


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ......                                                                          
T Consensus       154 ~~~~~~--------------------------------------------------------------------------  159 (338)
T cd07859         154 FNDTPT--------------------------------------------------------------------------  159 (338)
T ss_pred             ccccCc--------------------------------------------------------------------------
Confidence            310000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC--CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG--GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~--~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                .......+||++|+|||++.+  ..++.++|||||||++|||++|   |.....
T Consensus       160 --------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~  213 (338)
T cd07859         160 --------------------------AIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNV  213 (338)
T ss_pred             --------------------------cccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCCh
Confidence                                      000124578999999999876  6789999999999999999986   433221


Q ss_pred             HHH--H------------------------HHhcccc---CCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAA--A------------------------MSDLRDR---ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~--~------------------------~~~~~~~---~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ...  .                        +..+...   .+...++..++.+.+|+.+||++||++|||+.|+|+||||
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f  293 (338)
T cd07859         214 VHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYF  293 (338)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcCchh
Confidence            111  0                        0111111   1112244567888999999999999999999999999999


Q ss_pred             hhhhc
Q 001366          586 NEFQE  590 (1092)
Q Consensus       586 ~~~~~  590 (1092)
                      .....
T Consensus       294 ~~~~~  298 (338)
T cd07859         294 KGLAK  298 (338)
T ss_pred             hhcCc
Confidence            87544

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=3e-30  Score=295.08  Aligned_cols=246  Identities=20%  Similarity=0.189  Sum_probs=179.3

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC---chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM---PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .+|.|.||++....+.. .+..++.|+......   .........+..++...+|||++.++.....+...+        
T Consensus         6 ~G~~g~V~~~~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~--------   76 (323)
T cd05584           6 KGGYGKVFQVRKVTGAD-TGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLY--------   76 (323)
T ss_pred             ecCCeEEEEEEEcccCC-CCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEE--------
Confidence            46889999976532111 244555555432111   111122334556788889999998766654433333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              .+|||+.|++|.++++..+. +....+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++
T Consensus        77 --------lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  147 (323)
T cd05584          77 --------LILEYLSGGELFMHLEREGI-FMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLC  147 (323)
T ss_pred             --------EEEeCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCC
Confidence                    38999999999999977654 566688999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +......                                                                         
T Consensus       148 ~~~~~~~-------------------------------------------------------------------------  154 (323)
T cd05584         148 KESIHEG-------------------------------------------------------------------------  154 (323)
T ss_pred             eecccCC-------------------------------------------------------------------------
Confidence            6532100                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    .......||+.|+|||++.+..++.++|||||||+||||++|   |....
T Consensus       155 ------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~  204 (323)
T cd05584         155 ------------------------------TVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAEN  204 (323)
T ss_pred             ------------------------------CcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCC
Confidence                                          000134689999999999998899999999999999999986   44433


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      .............  +.....++.+.+|+.+||+++|++||     ++.++++||||...
T Consensus       205 ~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~  262 (323)
T cd05584         205 RKKTIDKILKGKL--NLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHV  262 (323)
T ss_pred             HHHHHHHHHcCCC--CCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCCC
Confidence            3332222222221  11223478899999999999999999     89999999999753

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.97  E-value=2.3e-30  Score=295.73  Aligned_cols=243  Identities=17%  Similarity=0.139  Sum_probs=178.5

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhc-cCCCCCCCccccceecCCCCCCCccCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVA-SNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ..++.|.||+|...+    .+..++.|++.....  .........+..++. ...||+++.++.....+...+       
T Consensus         4 G~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~-------   72 (321)
T cd05591           4 GKGSFGKVMLAELKG----TDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLF-------   72 (321)
T ss_pred             ccCCCeEEEEEEECC----CCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEE-------
Confidence            346789999997632    245566665532211  111222333344444 348999988776655443333       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               ++|||++|++|.+++...+ .++...++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus        73 ---------lv~E~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~  142 (321)
T cd05591          73 ---------FVMEYVNGGDLMFQIQRSR-KFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGM  142 (321)
T ss_pred             ---------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeeccc
Confidence                     3899999999999997654 467778999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++......                                                                        
T Consensus       143 ~~~~~~~~------------------------------------------------------------------------  150 (321)
T cd05591         143 CKEGILNG------------------------------------------------------------------------  150 (321)
T ss_pred             ceecccCC------------------------------------------------------------------------
Confidence            76522000                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                     .......||+.|+|||++.+..++.++|||||||++|||++|   |...
T Consensus       151 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~  199 (321)
T cd05591         151 -------------------------------VTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEAD  199 (321)
T ss_pred             -------------------------------ccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCC
Confidence                                           001135689999999999998999999999999999999986   5444


Q ss_pred             HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-------CHHHHhhhhhhhh
Q 001366          533 RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-------TTREILQSEVTNE  587 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-------sa~eiL~~~~~~~  587 (1092)
                      ................|.  ..++++.+|+.+||++||.+||       ++.++++||||..
T Consensus       200 ~~~~~~~~i~~~~~~~p~--~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~  259 (321)
T cd05591         200 NEDDLFESILHDDVLYPV--WLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKE  259 (321)
T ss_pred             CHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcCCccCC
Confidence            443333333333332232  2468889999999999999999       8999999999965

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=1.4e-27  Score=264.86  Aligned_cols=296  Identities=19%  Similarity=0.278  Sum_probs=232.1

Q ss_pred             eeecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC
Q 001366          773 GEFNNSANVICSISFDRDED-HFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG  851 (1092)
Q Consensus       773 ~~l~~h~~~V~sl~fspdg~-~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg  851 (1092)
                      +.+.+|+..|++++|-|.-. .++|||.|++|.+|+=..       ..+......|..-|.|+.|+|| +.+++|++.||
T Consensus       141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-------FKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDg  212 (603)
T KOG0318|consen  141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-------FKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDG  212 (603)
T ss_pred             ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-------eeeeecccccccceeeEEECCC-CCeEEEecCCc
Confidence            46779999999999998765 799999999999998442       2333344558888999999999 99999999999


Q ss_pred             cEEEEECCCCceEEEee---ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-----------------
Q 001366          852 VVKLWDACTGQTVSHYI---EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-----------------  911 (1092)
Q Consensus       852 tV~IWD~~tg~~i~~l~---~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-----------------  911 (1092)
                      +|.|||-.+|+.+..+.   +|.+.|.+++|+| |++.++|+|.|.++||||+.+.+++.++.                 
T Consensus       213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd  291 (603)
T KOG0318|consen  213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD  291 (603)
T ss_pred             cEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence            99999999999999998   8999999999999 99999999999999999998865544331                 


Q ss_pred             ---------------------------cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEE
Q 001366          912 ---------------------------NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVK  964 (1092)
Q Consensus       912 ---------------------------~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~  964 (1092)
                                                 |...|+++..+|++. +|++|+.||.|.-||..++..-...-.+|...|.+++
T Consensus       292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~  370 (603)
T KOG0318|consen  292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA  370 (603)
T ss_pred             eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence                                       334689999999994 9999999999999999877543222256776676666


Q ss_pred             EcCCCEEEEEECCCeEEEEEcCCCCCCC---------C------------------------------------------
Q 001366          965 FLDSGTLVTASTDNKLKLWDLKRTSHTG---------P------------------------------------------  993 (1092)
Q Consensus       965 fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~---------~------------------------------------------  993 (1092)
                      -+..+.+++.+.|.+|++.++.......         +                                          
T Consensus       371 ~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA  450 (603)
T KOG0318|consen  371 ASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA  450 (603)
T ss_pred             ecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence            6555566666666666666553110000         0                                          


Q ss_pred             ---------------------C---CCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeecccc
Q 001366          994 ---------------------S---TNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSI 1049 (1092)
Q Consensus       994 ---------------------~---~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~ 1049 (1092)
                                           .   .......+..|..+|+++++|||+.|||+|...+.|.+|++.+.+... .     
T Consensus       451 v~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~-~-----  524 (603)
T KOG0318|consen  451 VSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT-N-----  524 (603)
T ss_pred             EcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec-c-----
Confidence                                 0   001112334578889999999999999999999999999988766521 1     


Q ss_pred             CCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1050 DPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1050 ~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                             ...-|...|++|+|+|+..+||||+-|-+|.||.+
T Consensus       525 -------~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  525 -------RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV  559 (603)
T ss_pred             -------eeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence                   12347889999999999999999999999999986

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.4e-30  Score=298.93  Aligned_cols=273  Identities=16%  Similarity=0.118  Sum_probs=185.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++....    .+..++.|+......  .........+..++...+||+++.++.....+...+         
T Consensus        11 ~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~---------   77 (350)
T cd05573          11 RGAFGEVWLVRDKD----TGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLY---------   77 (350)
T ss_pred             eCCcEEEEEEEECC----CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEE---------
Confidence            35789999998732    245566655432211  122233445566788889999998766544333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||+.|++|.+++... ..++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus        78 -------lv~e~~~~~~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~  149 (350)
T cd05573          78 -------LVMEYMPGGDLMNLLIRK-DVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCK  149 (350)
T ss_pred             -------EEEcCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCc
Confidence                   389999999999999776 457777999999999999999999999999999999999999999999999998


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+..............                                                +....     ..... 
T Consensus       150 ~~~~~~~~~~~~~~~~------------------------------------------------~~~~~-----~~~~~-  175 (350)
T cd05573         150 KMNKAKDREYYLNDSH------------------------------------------------NLLFR-----DNVLV-  175 (350)
T ss_pred             cCcccCcccccccccc------------------------------------------------ccccc-----ccccc-
Confidence            7553211100000000                                                00000     00000 


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                          ...............+||+.|+|||.+.+..++.++|||||||+||||+++   |.....
T Consensus       176 --------------------~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~  235 (350)
T cd05573         176 --------------------RRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTL  235 (350)
T ss_pred             --------------------cccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCH
Confidence                                000000011122356799999999999999999999999999999999986   443333


Q ss_pred             HHHHHHhcc--ccCCCCCCCCCChhHHHHHHhccccCCCCCCC-HHHHhhhhhhhhh
Q 001366          535 LAAAMSDLR--DRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-TREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~--~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-a~eiL~~~~~~~~  588 (1092)
                      .........  .....|.....++.+.+||.+||. +|.+||+ +.++|+||||...
T Consensus       236 ~~~~~~i~~~~~~~~~p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~  291 (350)
T cd05573         236 QETYNKIINWKESLRFPPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSHPFFKGI  291 (350)
T ss_pred             HHHHHHHhccCCcccCCCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCC
Confidence            332222222  222223333468899999999997 9999999 9999999999764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.96  E-value=3e-30  Score=294.16  Aligned_cols=244  Identities=18%  Similarity=0.151  Sum_probs=175.3

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhh-ccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMV-ASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ..++.|+||++...+    .++.++.|+......  .........+...+ ....||+++.++.....+...+       
T Consensus         4 G~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~-------   72 (316)
T cd05592           4 GKGSFGKVMLAELKG----TNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLF-------   72 (316)
T ss_pred             eeCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEE-------
Confidence            346889999997632    345566655422111  11111122222233 3458999998766544333333       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               .+|||++|++|.++++..+ .++..++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus        73 ---------lv~e~~~gg~L~~~~~~~~-~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~  142 (316)
T cd05592          73 ---------FVMEYLNGGDLMFHIQSSG-RFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGM  142 (316)
T ss_pred             ---------EEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcC
Confidence                     3899999999999997765 467778999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++......                                                                        
T Consensus       143 a~~~~~~~------------------------------------------------------------------------  150 (316)
T cd05592         143 CKENMNGE------------------------------------------------------------------------  150 (316)
T ss_pred             CeECCCCC------------------------------------------------------------------------
Confidence            86532000                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                     ......+||+.|+|||.+.+..++.++|||||||++|||++|   |.+.
T Consensus       151 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~  199 (316)
T cd05592         151 -------------------------------GKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGE  199 (316)
T ss_pred             -------------------------------CccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCC
Confidence                                           001145789999999999998999999999999999999986   4443


Q ss_pred             HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH-HHHhhhhhhhhh
Q 001366          533 RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT-REILQSEVTNEF  588 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa-~eiL~~~~~~~~  588 (1092)
                      .............  +......++++.+|+.+||+.+|.+||++ .++++||||...
T Consensus       200 ~~~~~~~~i~~~~--~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~h~~~~~~  254 (316)
T cd05592         200 DEDELFDSILNDR--PHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQHPFFRGI  254 (316)
T ss_pred             CHHHHHHHHHcCC--CCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCcccCCC
Confidence            3322222222221  22223357788999999999999999986 589999999763

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.96  E-value=1.6e-30  Score=297.62  Aligned_cols=242  Identities=17%  Similarity=0.163  Sum_probs=178.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++...    ..+..++.|+.......  ........+..++...+|||++.+......+...+         
T Consensus         5 ~G~~g~V~~~~~~----~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~---------   71 (325)
T cd05594           5 KGTFGKVILVKEK----ATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLC---------   71 (325)
T ss_pred             eCCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEE---------
Confidence            4678999988752    12455566554322211  12233445666778889999998766554433333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                             ++|||++|++|.+++...+ .++..+++.++.||+.||+|||+ +||+||||||+|||++.++.+||+|||++
T Consensus        72 -------lv~E~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~  143 (325)
T cd05594          72 -------FVMEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLC  143 (325)
T ss_pred             -------EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCC
Confidence                   3899999999999997654 56777999999999999999997 79999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +......                                                                         
T Consensus       144 ~~~~~~~-------------------------------------------------------------------------  150 (325)
T cd05594         144 KEGIKDG-------------------------------------------------------------------------  150 (325)
T ss_pred             eecCCCC-------------------------------------------------------------------------
Confidence            6532000                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    ......+||+.|+|||++.+..++.++|||||||+||||++|   |....
T Consensus       151 ------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~  200 (325)
T cd05594         151 ------------------------------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD  200 (325)
T ss_pred             ------------------------------cccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCC
Confidence                                          001135689999999999999999999999999999999996   43322


Q ss_pred             HHHHHHHhcccc-CCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          534 ALAAAMSDLRDR-ILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~~-~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      ............ .+|   ...++++.+|+.+||.+||.+|+     ++.++++||||...
T Consensus       201 ~~~~~~~i~~~~~~~p---~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~  258 (325)
T cd05594         201 HEKLFELILMEEIRFP---RTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGI  258 (325)
T ss_pred             HHHHHHHHhcCCCCCC---CCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcCCCcCCC
Confidence            222222112211 122   23578899999999999999997     89999999999764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.96  E-value=2.6e-30  Score=290.04  Aligned_cols=245  Identities=14%  Similarity=0.166  Sum_probs=177.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...    ..+..++.|+......  ........++..++....|++++........+...+         
T Consensus        10 ~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~---------   76 (285)
T cd05631          10 KGGFGEVCACQVR----ATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALC---------   76 (285)
T ss_pred             cCCCEEEEEEEEe----cCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEE---------
Confidence            3578999998762    2245556554322111  112223445677888889999987655543333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                             .+|||+.|++|.+++... ...++...++.++.||+.||+|||++||+||||||+|||++.++.+|++|||++
T Consensus        77 -------lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~  149 (285)
T cd05631          77 -------LVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLA  149 (285)
T ss_pred             -------EEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCc
Confidence                   389999999999988643 345788899999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       150 ~~~~~~--------------------------------------------------------------------------  155 (285)
T cd05631         150 VQIPEG--------------------------------------------------------------------------  155 (285)
T ss_pred             EEcCCC--------------------------------------------------------------------------
Confidence            653200                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    ......+||..|+|||++.+..++.++|||||||+||||+++   |....
T Consensus       156 ------------------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~  205 (285)
T cd05631         156 ------------------------------ETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRK  205 (285)
T ss_pred             ------------------------------CeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCC
Confidence                                          001134689999999999999999999999999999999986   43321


Q ss_pred             H---HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhhh
Q 001366          534 A---LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEFQ  589 (1092)
Q Consensus       534 ~---~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~~  589 (1092)
                      .   .......+.. ...+.....++.+.+|+.+||.+||.+||+     ++++++||||.+..
T Consensus       206 ~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~  268 (285)
T cd05631         206 ERVKREEVDRRVKE-DQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNIN  268 (285)
T ss_pred             cchhHHHHHHHhhc-ccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCC
Confidence            1   1111111211 111222345788999999999999999997     89999999998753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=2.2e-30  Score=286.55  Aligned_cols=256  Identities=16%  Similarity=0.117  Sum_probs=190.8

Q ss_pred             hHHHhhhcc-c-cceeeeCCCCCcccccccccccccccccc---------C----chhhHhhhhhhhhhccCCCCCCCcc
Q 001366          213 EFFVKTTLK-G-KGIVCRGPPLNAFKERRGMIDTKAFVTTT---------M----PSDAALKAAGAMMVASNASPKPVGV  277 (1092)
Q Consensus       213 ~~~~~~~~~-g-~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~~~  277 (1092)
                      +|.+.++++ | .|+|-++..    .+.+..+|.||+.-.-         .    -.....-.++.+.+....|||++.+
T Consensus        98 qy~l~~eiG~G~yGkVkLar~----~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   98 QYELIKEIGSGQYGKVKLARD----EVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             heehhhhhcCCccceEEEEee----cCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            678877776 2 477766665    2234555555531111         0    1112234456777888999999976


Q ss_pred             ccc---eecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccC
Q 001366          278 GTA---VVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLD  354 (1092)
Q Consensus       278 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrD  354 (1092)
                      ++.   ...+...                 .+.|||..|.+.. .-.....+...+++.||+.++.||+|||.|||||||
T Consensus       174 iEvLDDP~s~~~Y-----------------lVley~s~G~v~w-~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRD  235 (576)
T KOG0585|consen  174 IEVLDDPESDKLY-----------------LVLEYCSKGEVKW-CPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRD  235 (576)
T ss_pred             EEeecCcccCceE-----------------EEEEeccCCcccc-CCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccc
Confidence            543   2222222                 2789999888754 322333378889999999999999999999999999


Q ss_pred             CCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCcc
Q 001366          355 LKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKY  434 (1092)
Q Consensus       355 LKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (1092)
                      |||+|+||+.+|+|||+|||.+........                                                  
T Consensus       236 IKPsNLLl~~~g~VKIsDFGVs~~~~~~~~--------------------------------------------------  265 (576)
T KOG0585|consen  236 IKPSNLLLSSDGTVKISDFGVSNEFPQGSD--------------------------------------------------  265 (576)
T ss_pred             cchhheEEcCCCcEEeeccceeeecccCCc--------------------------------------------------
Confidence            999999999999999999999876541100                                                  


Q ss_pred             CCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC----CC
Q 001366          435 GNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV----CT  510 (1092)
Q Consensus       435 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~----~t  510 (1092)
                                                                      +.....+...+|||.|+|||.+.++.    .+
T Consensus       266 ------------------------------------------------~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g  297 (576)
T KOG0585|consen  266 ------------------------------------------------EGSDDQLSRTVGTPAFFAPELCSGGNSFSYSG  297 (576)
T ss_pred             ------------------------------------------------cccHHHHhhcCCCccccchHhhcCCCCccccc
Confidence                                                            00011123478999999999998833    47


Q ss_pred             ccccchhhhHHHHHHcC---CCCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          511 TSSNIYSLGVLFFELFG---RFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       511 ~~sDIwSLGvll~ell~---~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ++.|||||||+||.|+.   ||-++......-+++......|..+..++...+||++||++||..|.+..+|..|||...
T Consensus       298 ~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~  377 (576)
T KOG0585|consen  298 FALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTR  377 (576)
T ss_pred             hhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhheecceecc
Confidence            89999999999999995   588887777777777777777888888999999999999999999999999999999986


Q ss_pred             h
Q 001366          588 F  588 (1092)
Q Consensus       588 ~  588 (1092)
                      .
T Consensus       378 ~  378 (576)
T KOG0585|consen  378 D  378 (576)
T ss_pred             C
Confidence            5

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=2.8e-30  Score=294.37  Aligned_cols=243  Identities=17%  Similarity=0.147  Sum_probs=175.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhc-cCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVA-SNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .+|.|.||++....    .+..++.|+......  .........+..++. ...||+++.++.....+...+        
T Consensus         5 ~G~~g~V~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~--------   72 (316)
T cd05620           5 KGSFGKVLLAELKG----KGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLF--------   72 (316)
T ss_pred             eCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEE--------
Confidence            46789999998632    345555555422111  112222333333343 358999998776655444333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              .+|||+.|++|.+++...+ .++..++..++.||+.||+|||++||+||||||+|||++.++.+|++|||++
T Consensus        73 --------lv~E~~~~g~L~~~i~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~  143 (316)
T cd05620          73 --------FVMEFLNGGDLMFHIQDKG-RFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMC  143 (316)
T ss_pred             --------EEECCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCC
Confidence                    3899999999999997754 4677799999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       144 ~~~~~~--------------------------------------------------------------------------  149 (316)
T cd05620         144 KENVFG--------------------------------------------------------------------------  149 (316)
T ss_pred             eecccC--------------------------------------------------------------------------
Confidence            642100                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                   .......+||+.|+|||++.+..++.++|||||||+||||+++   |....
T Consensus       150 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~  200 (316)
T cd05620         150 -----------------------------DNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDD  200 (316)
T ss_pred             -----------------------------CCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC
Confidence                                         0001145789999999999999999999999999999999986   43333


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH-HHHhhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT-REILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa-~eiL~~~~~~~~  588 (1092)
                      .. .....+.... +......++++.+|+.+||+.||.+||++ .++++||||...
T Consensus       201 ~~-~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~~h~~f~~~  254 (316)
T cd05620         201 ED-ELFESIRVDT-PHYPRWITKESKDILEKLFERDPTRRLGVVGNIRGHPFFKTI  254 (316)
T ss_pred             HH-HHHHHHHhCC-CCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCCCcCCC
Confidence            22 2222222111 11122357889999999999999999998 589999999764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=6.9e-30  Score=269.63  Aligned_cols=271  Identities=18%  Similarity=0.333  Sum_probs=229.5

Q ss_pred             CCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccccccee
Q 001366          744 PTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAV  823 (1092)
Q Consensus       744 ~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~  823 (1092)
                      .+..+++..|+++++|+...+.+..     .|.+|++.|-|+.|+  .+.+++|+.|.+|+|||+++.       .....
T Consensus       207 D~kiVSGlrDnTikiWD~n~~~c~~-----~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg-------e~l~t  272 (499)
T KOG0281|consen  207 DEKIVSGLRDNTIKIWDKNSLECLK-----ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG-------EPLNT  272 (499)
T ss_pred             chhhhcccccCceEEeccccHHHHH-----hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC-------chhhH
Confidence            3445688999999999987776654     356999999999986  459999999999999999872       23345


Q ss_pred             eecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc---eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEe
Q 001366          824 EMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ---TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN  900 (1092)
Q Consensus       824 ~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~---~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWD  900 (1092)
                      .+.|...|..+.|+.   .+++|||.|.+|.+||+....   +.+.+.||...|+.|+|+.   ++++|+|.|.+|++|+
T Consensus       273 lihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  273 LIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWS  346 (499)
T ss_pred             HhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEe
Confidence            667999999999985   599999999999999987654   3456779999999999964   6999999999999999


Q ss_pred             cCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCe
Q 001366          901 INEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNK  979 (1092)
Q Consensus       901 l~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~  979 (1092)
                      +.++.++.++. |...|.|+++.  + .++++|+.|.+|++||+..+. .+..++||..-|.++.|. ++.+++|+.||+
T Consensus       347 ~st~efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~-cLRvLeGHEeLvRciRFd-~krIVSGaYDGk  421 (499)
T KOG0281|consen  347 TSTCEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRFD-NKRIVSGAYDGK  421 (499)
T ss_pred             ccceeeehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccH-HHHHHhchHHhhhheeec-Cceeeeccccce
Confidence            99999999998 67789999986  3 599999999999999999886 467899999999999994 788999999999


Q ss_pred             EEEEEcCCCCCC-CCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCce
Q 001366          980 LKLWDLKRTSHT-GPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPI 1041 (1092)
Q Consensus       980 I~vWDl~~~~~~-~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i 1041 (1092)
                      |+|||+.....+ ......|+.++..|++.|..+.|.  ...|++++.|.+|.|||+..+.+-
T Consensus       422 ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  422 IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             EEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence            999999865433 233446788888899999888885  457999999999999998766543

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.96  E-value=2.5e-30  Score=272.18  Aligned_cols=253  Identities=17%  Similarity=0.170  Sum_probs=181.3

Q ss_pred             ccceeeeCCCCCcccccccccccc-ccccccCchhhHhhhhhhhhhccCCCCCCCccccceec-CCCCCCCccCCCCCcc
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDTK-AFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVS-NGSLDLGARTGVPASC  299 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  299 (1092)
                      -.|.|||+.+.+.-.-+....|.| ++...++..-...+.++.+|++..+|||++++...... +....           
T Consensus        36 TYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~-----------  104 (438)
T KOG0666|consen   36 TYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKVW-----------  104 (438)
T ss_pred             ccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEE-----------
Confidence            369999997766333323345554 44333445556778999999999999999986555443 11111           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc----CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC----CcEEEe
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR----GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS----NQVKYI  371 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~----~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~----~~vkl~  371 (1092)
                           .+.+| ..-+|.+.|+-.    .+.++...+..|+.||++||.|||++-|+||||||+|||+..+    |.|||+
T Consensus       105 -----l~fdY-AEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIa  178 (438)
T KOG0666|consen  105 -----LLFDY-AEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIA  178 (438)
T ss_pred             -----EEehh-hhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEee
Confidence                 13344 456899999543    3457777899999999999999999999999999999999977    999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||++|.+..+..                                                                   
T Consensus       179 DlGlaR~~~~plk-------------------------------------------------------------------  191 (438)
T KOG0666|consen  179 DLGLARLFNNPLK-------------------------------------------------------------------  191 (438)
T ss_pred             cccHHHHhhcccc-------------------------------------------------------------------
Confidence            9999998764321                                                                   


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                       +.-+....+-|.||+|||+|.| ..||.+.|+||+|||+.|||+-  
T Consensus       192 ---------------------------------pl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~P  238 (438)
T KOG0666|consen  192 ---------------------------------PLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEP  238 (438)
T ss_pred             ---------------------------------ccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCc
Confidence                                             1112236788999999999999 6699999999999999999973  


Q ss_pred             -CCcHHH---------HHHH---HHhccc---cCCC---------------------CC--------CCCCChhHHHHHH
Q 001366          529 -FDSERA---------LAAA---MSDLRD---RILP---------------------PS--------FLSENPKEAGFCL  563 (1092)
Q Consensus       529 -f~~~~~---------~~~~---~~~~~~---~~~p---------------------~~--------~~~~~~~~~~li~  563 (1092)
                       |.+.+.         ..+.   +..+-.   ...|                     +.        ....+|...+|+.
T Consensus       239 lF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~  318 (438)
T KOG0666|consen  239 LFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQ  318 (438)
T ss_pred             cccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHH
Confidence             433321         1111   111110   0000                     10        1123455789999


Q ss_pred             hccccCCCCCCCHHHHhhhhhhhhhhcc
Q 001366          564 WQLHPEPLSRPTTREILQSEVTNEFQEV  591 (1092)
Q Consensus       564 ~lL~~dP~~Rpsa~eiL~~~~~~~~~~~  591 (1092)
                      +||.+||.+|+|+.+.|+|+||.+.+.+
T Consensus       319 klL~yDP~kRIta~qAleh~yF~~d~lp  346 (438)
T KOG0666|consen  319 KLLTYDPIKRITAEQALEHPYFTEDPLP  346 (438)
T ss_pred             HHhccCchhhccHHHHhcccccccCCCC
Confidence            9999999999999999999999987444

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.96  E-value=2.2e-30  Score=303.07  Aligned_cols=292  Identities=14%  Similarity=0.112  Sum_probs=183.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...+    .+..++.|+......  .........+..++....||+++.++.....+...+         
T Consensus        11 ~G~~g~Vy~~~~~~----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~---------   77 (381)
T cd05626          11 IGAFGEVCLACKVD----THALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLY---------   77 (381)
T ss_pred             ecCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEE---------
Confidence            45789999997632    355666665533221  112233445666788889999998776655433333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++||||.||+|.+++...+ .+++..++.++.||+.||+|||++||+||||||+||||+.++.+||+|||+++
T Consensus        78 -------lv~E~~~gg~L~~~l~~~~-~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~  149 (381)
T cd05626          78 -------FVMDYIPGGDMMSLLIRME-VFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCT  149 (381)
T ss_pred             -------EEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCc
Confidence                   3899999999999997765 46676899999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+..........           ....        .+   ....    ..+..+.               +.........
T Consensus       150 ~~~~~~~~~~~~-----------~~~~--------~~---~~~~----~~~~~~~---------------~~~~~~~~~~  188 (381)
T cd05626         150 GFRWTHNSKYYQ-----------KGSH--------IR---QDSM----EPSDLWD---------------DVSNCRCGDR  188 (381)
T ss_pred             cccccccccccc-----------cccc--------cc---cccc----Ccccccc---------------cccccccccc
Confidence            643211100000           0000        00   0000    0000000               0000000000


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                      .....               ...............+||+.|+|||.+.+..++.++|||||||+||||++|   |.....
T Consensus       189 ~~~~~---------------~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~  253 (381)
T cd05626         189 LKTLE---------------QRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTP  253 (381)
T ss_pred             cchhh---------------ccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCH
Confidence            00000               000000001111256899999999999998899999999999999999986   433333


Q ss_pred             HHHHHHhcc--ccCCCCCCCCCChhHHHHHHhccc--cCCCCCCCHHHHhhhhhhhhh
Q 001366          535 LAAAMSDLR--DRILPPSFLSENPKEAGFCLWQLH--PEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~--~~~~p~~~~~~~~~~~~li~~lL~--~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      .......+.  .....|.....++++.+|+.+||.  ++|..||++.+|+.||||.+.
T Consensus       254 ~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~  311 (381)
T cd05626         254 TETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEV  311 (381)
T ss_pred             HHHHHHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCcccCCC
Confidence            322222222  222233444568999999999664  455569999999999999753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.7e-28  Score=247.99  Aligned_cols=286  Identities=14%  Similarity=0.236  Sum_probs=250.3

Q ss_pred             eeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          773 GEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       773 ~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      ..+.+|...|.+|+|+.+|..||+|+.|+++++|++...     .........+|.+.|-.++|+|.....|++++.|.+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence            356789999999999999999999999999999998753     122334456789999999999988999999999999


Q ss_pred             EEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEE
Q 001366          853 VKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latg  932 (1092)
                      |++||+.+++++.........+ -+.|+| ++++++.++.|..|.+.|.++.+.+...+....++-+.|+-++ .+|+..
T Consensus        89 ir~wd~r~~k~~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n-d~Fflt  165 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN-DLFFLT  165 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCC-CEEEEe
Confidence            9999999999998887555555 689999 8999999999999999999999988888888888999999555 466666


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~ 1011 (1092)
                      ...|+|.|......+ ++..+.+|.....||.|+ ++.+|++|+.|-.+.+||+.        .-.|.+.+..+.-+|+.
T Consensus       166 ~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~--------ELiC~R~isRldwpVRT  236 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD--------ELICERCISRLDWPVRT  236 (313)
T ss_pred             cCCceEEEEeccccc-cccccccCCcceEEEEECCCCceEeeccccceeeccChh--------HhhhheeeccccCceEE
Confidence            678999999888665 678899999999999999 78899999999999999998        45788999999999999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecC--------
Q 001366         1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSS-------- 1083 (1092)
Q Consensus      1012 v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~D-------- 1083 (1092)
                      ++||.||++||+||+|..|-|=++.+|..+..++.               .++-..|+|+|+..+||-+++|        
T Consensus       237 lSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---------------~~~t~tVAWHPk~~LLAyA~ddk~~d~~re  301 (313)
T KOG1407|consen  237 LSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---------------EGPTFTVAWHPKRPLLAYACDDKDGDSNRE  301 (313)
T ss_pred             EEeccCcceeeccCccceEEeEecccCCeEEEeec---------------cCCceeEEecCCCceeeEEecCCCCccccc
Confidence            99999999999999999999999999999888763               5678999999999999988765        


Q ss_pred             -CeEEEEE
Q 001366         1084 -GCIKVLQ 1090 (1092)
Q Consensus      1084 -G~V~vW~ 1090 (1092)
                       |.|++|=
T Consensus       302 ag~vKiFG  309 (313)
T KOG1407|consen  302 AGTVKIFG  309 (313)
T ss_pred             cceeEEec
Confidence             5777763

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.7e-30  Score=300.33  Aligned_cols=238  Identities=17%  Similarity=0.164  Sum_probs=185.7

Q ss_pred             ccceeeeCCCCCccccccccccccccccccCchh-----hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-----AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .+|+|+.+..    +...+..|.|+.--..+..+     .....++-.+  .++||-++.++.-.+.+..++        
T Consensus       380 sFGkV~lae~----k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~l--a~~HPFL~~L~~~fQT~~~l~--------  445 (694)
T KOG0694|consen  380 SFGKVLLAEL----KGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFEL--ANRHPFLVNLFSCFQTKEHLF--------  445 (694)
T ss_pred             cCceEEEEEE----cCCCcEEEEEEeeccceeccccHHHHHHHHHHHHH--hccCCeEeecccccccCCeEE--------
Confidence            3699999887    44456666665433332222     1222222222  227888776544444333222        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              .+|||+.||+|..++...  .+++..++.|+..|+.||+|||++|||+||||-+||||+..|++||+|||++
T Consensus       446 --------fvmey~~Ggdm~~~~~~~--~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlc  515 (694)
T KOG0694|consen  446 --------FVMEYVAGGDLMHHIHTD--VFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLC  515 (694)
T ss_pred             --------EEEEecCCCcEEEEEecc--cccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccc
Confidence                    389999999976665433  6888899999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      |+....                                                                   |      
T Consensus       516 Ke~m~~-------------------------------------------------------------------g------  522 (694)
T KOG0694|consen  516 KEGMGQ-------------------------------------------------------------------G------  522 (694)
T ss_pred             cccCCC-------------------------------------------------------------------C------
Confidence            874310                                                                   0      


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    ...++.||||-|||||++.+..||.++|.|||||+|||||.|   |++++
T Consensus       523 ------------------------------~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gdd  572 (694)
T KOG0694|consen  523 ------------------------------DRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDD  572 (694)
T ss_pred             ------------------------------CccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence                                          011278999999999999999999999999999999999974   88888


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      +....-+++....+.|.++  +.+...++.+||.++|++|..     +.+|.+||||...
T Consensus       573 Eee~FdsI~~d~~~yP~~l--s~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i  630 (694)
T KOG0694|consen  573 EEEVFDSIVNDEVRYPRFL--SKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSI  630 (694)
T ss_pred             HHHHHHHHhcCCCCCCCcc--cHHHHHHHHHHhccCcccccCCCCCCchhhhhCCccccC
Confidence            8888888888888888887  788889999999999999975     4899999999875

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.96  E-value=4e-30  Score=291.93  Aligned_cols=252  Identities=15%  Similarity=0.193  Sum_probs=180.3

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||+|...    ..+..++.|...............++..++...+|||++.+++....+...+   
T Consensus         8 y~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~---   80 (309)
T cd07872           8 YIKLEKLGEGTYATVFKGRSK----LTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLT---   80 (309)
T ss_pred             eEEEEEecccCCEEEEEEEec----CCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEE---
Confidence            4444444  478999999762    2244455554432222222233456677788889999998777655433333   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   ++|||+++ +|.+++...+..++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++
T Consensus        81 -------------lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~  146 (309)
T cd07872          81 -------------LVFEYLDK-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLA  146 (309)
T ss_pred             -------------EEEeCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEC
Confidence                         37999986 8999998776678888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++......                                                                    
T Consensus       147 Dfg~~~~~~~~~--------------------------------------------------------------------  158 (309)
T cd07872         147 DFGLARAKSVPT--------------------------------------------------------------------  158 (309)
T ss_pred             ccccceecCCCc--------------------------------------------------------------------
Confidence            999886532100                                                                    


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                         .......+|++|+|||.+.+ ..++.++|||||||++|||+++  
T Consensus       159 -----------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~  203 (309)
T cd07872         159 -----------------------------------KTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRP  203 (309)
T ss_pred             -----------------------------------cccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence                                               00013457889999999876 5689999999999999999986  


Q ss_pred             -CCcHHHHH---HHHHhccc-----------------cCCC--------CCCCCCChhHHHHHHhccccCCCCCCCHHHH
Q 001366          529 -FDSERALA---AAMSDLRD-----------------RILP--------PSFLSENPKEAGFCLWQLHPEPLSRPTTREI  579 (1092)
Q Consensus       529 -f~~~~~~~---~~~~~~~~-----------------~~~p--------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~ei  579 (1092)
                       |.......   ..+..+..                 ...|        ......++++.+|+.+||++||.+|||+.|+
T Consensus       204 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~  283 (309)
T cd07872         204 LFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEA  283 (309)
T ss_pred             CCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHH
Confidence             43322211   11111100                 0001        1122456788999999999999999999999


Q ss_pred             hhhhhhhhhh
Q 001366          580 LQSEVTNEFQ  589 (1092)
Q Consensus       580 L~~~~~~~~~  589 (1092)
                      |+||||....
T Consensus       284 l~h~~~~~~~  293 (309)
T cd07872         284 MKHAYFRSLG  293 (309)
T ss_pred             hcChhhhhcc
Confidence            9999998753

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.96  E-value=8.2e-30  Score=286.22  Aligned_cols=253  Identities=16%  Similarity=0.131  Sum_probs=170.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhh---hhhccCCCCCCCccccceecCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGA---MMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      |.+.+.+  ++.|+||++....   ..+..++.|+...... ........++.   +.+....|||++.+++........
T Consensus         3 Y~~~~~lg~G~~g~Vy~~~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~   79 (290)
T cd07862           3 YECVAEIGEGAYGKVFKARDLK---NGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   79 (290)
T ss_pred             cceeeEeccCCCeEEEEEEEcC---CCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCC
Confidence            4444433  4789999996521   0023344443321111 11111122222   334445799999876654321111


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .    ....       ..+|||+. ++|.+++... ...++..+++.++.||+.||+|||++||+||||||+|||++.++
T Consensus        80 ~----~~~~-------~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~  147 (290)
T cd07862          80 R----ETKL-------TLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSG  147 (290)
T ss_pred             C----CCcE-------EEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCC
Confidence            0    0111       13788886 5999999653 33477889999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+|++|||+++.....                                                                
T Consensus       148 ~~kl~Dfg~~~~~~~~----------------------------------------------------------------  163 (290)
T cd07862         148 QIKLADFGLARIYSFQ----------------------------------------------------------------  163 (290)
T ss_pred             CEEEccccceEeccCC----------------------------------------------------------------
Confidence            9999999988653310                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              .......||++|+|||.+.+..++.++|||||||+||||+
T Consensus       164 ----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~  203 (290)
T cd07862         164 ----------------------------------------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMF  203 (290)
T ss_pred             ----------------------------------------cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHH
Confidence                                                    0011456899999999999989999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCC--C-----------------------CCCCCCChhHHHHHHhccccCCCCCCCHHH
Q 001366          527 GR---FDSERALAAAMSDLRDRIL--P-----------------------PSFLSENPKEAGFCLWQLHPEPLSRPTTRE  578 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~--p-----------------------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e  578 (1092)
                      ++   |.+..........+.....  +                       ...+..++.+.+|+.+||+++|++|||+.|
T Consensus       204 ~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~  283 (290)
T cd07862         204 RRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYS  283 (290)
T ss_pred             cCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHH
Confidence            86   4443332222222111000  0                       011245677889999999999999999999


Q ss_pred             Hhhhhhh
Q 001366          579 ILQSEVT  585 (1092)
Q Consensus       579 iL~~~~~  585 (1092)
                      +|+||||
T Consensus       284 ~l~hp~f  290 (290)
T cd07862         284 ALSHPYF  290 (290)
T ss_pred             HhcCCCC
Confidence            9999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.96  E-value=3.9e-30  Score=294.12  Aligned_cols=242  Identities=16%  Similarity=0.112  Sum_probs=175.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhh-hhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAG-AMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .+|.|.||++...    ..+..++.|++......  ........+ ..++...+|||++.++.....+...+        
T Consensus         5 ~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~--------   72 (323)
T cd05575           5 KGSFGKVLLAKHK----ADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLY--------   72 (323)
T ss_pred             eCCCeEEEEEEEC----CCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEE--------
Confidence            3678999999863    23555666665322111  111112222 22456779999998765544333222        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              ++|||++|++|.+++...+ .+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++
T Consensus        73 --------lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~  143 (323)
T cd05575          73 --------FVLDYVNGGELFFHLQRER-SFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLC  143 (323)
T ss_pred             --------EEEcCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCC
Confidence                    3899999999999997654 4677789999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       144 ~~~~~~--------------------------------------------------------------------------  149 (323)
T cd05575         144 KEGIEH--------------------------------------------------------------------------  149 (323)
T ss_pred             cccccC--------------------------------------------------------------------------
Confidence            642200                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                   .......+||+.|+|||++.+..++.++|||||||+||||+++   |....
T Consensus       150 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~  200 (323)
T cd05575         150 -----------------------------SKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRD  200 (323)
T ss_pred             -----------------------------CCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCC
Confidence                                         0001145689999999999999999999999999999999986   43333


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH----HHHhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT----REILQSEVTNE  587 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa----~eiL~~~~~~~  587 (1092)
                      ........+....  ......++.+.+|+.+||+.||.+||++    .++++||||..
T Consensus       201 ~~~~~~~i~~~~~--~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~il~~~~~~~  256 (323)
T cd05575         201 TAEMYDNILNKPL--RLKPNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSS  256 (323)
T ss_pred             HHHHHHHHHcCCC--CCCCCCCHHHHHHHHHHhhcCHHhCCCCCCCHHHHHcCCCcCC
Confidence            2222222222211  1222347889999999999999999998    69999999965

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.96  E-value=3.4e-30  Score=296.64  Aligned_cols=250  Identities=15%  Similarity=0.111  Sum_probs=182.4

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      +.+|.+.+.++  +.|.||++...+.  . +..++.|++.....  ........++..++...+|||++.++.....+..
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~--~-~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~  105 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNE--D-FPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESY  105 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECC--C-CeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCE
Confidence            33455544444  6799999964220  0 12344444321111  1122234456677888899999987766544333


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                ++|||+.||+|.++|...+ .++...+..++.||+.||+|||++||+||||||+|||++.++
T Consensus       106 ~~----------------lv~Ey~~~g~L~~~i~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~  168 (340)
T PTZ00426        106 LY----------------LVLEFVIGGEFFTFLRRNK-RFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDG  168 (340)
T ss_pred             EE----------------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCC
Confidence            33                3899999999999997765 467778999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+|++|||+++.....                                                                
T Consensus       169 ~ikL~DFG~a~~~~~~----------------------------------------------------------------  184 (340)
T PTZ00426        169 FIKMTDFGFAKVVDTR----------------------------------------------------------------  184 (340)
T ss_pred             CEEEecCCCCeecCCC----------------------------------------------------------------
Confidence            9999999988653200                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                                ....+||+.|+|||++.+..++.++|||||||+||||+
T Consensus       185 ------------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell  222 (340)
T PTZ00426        185 ------------------------------------------TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEIL  222 (340)
T ss_pred             ------------------------------------------cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHh
Confidence                                                      01346899999999999988999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      +|   |...................|.  ..++.+.+|+.+||..+|.+|+     ++.++++||||...
T Consensus       223 ~G~~Pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~  290 (340)
T PTZ00426        223 VGCPPFYANEPLLIYQKILEGIIYFPK--FLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNI  290 (340)
T ss_pred             cCCCCCCCCCHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence            86   4443333333333333222222  2467889999999999999995     89999999999764

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=4.4e-30  Score=294.90  Aligned_cols=242  Identities=16%  Similarity=0.169  Sum_probs=178.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++...+    .++.++.|++......  ........+..++...+|||++.++.....+...+         
T Consensus        11 ~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~---------   77 (333)
T cd05600          11 QGGYGQVFLAKKKD----TGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLY---------   77 (333)
T ss_pred             ecCCeEEEEEEECC----CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEE---------
Confidence            34789999998632    2455666655322111  11222344556677778999998776554333333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||++|++|.+++...+ .+++.+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++
T Consensus        78 -------lv~e~~~g~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~  149 (333)
T cd05600          78 -------LAMEYVPGGDFRTLLNNLG-VLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSK  149 (333)
T ss_pred             -------EEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCc
Confidence                   3899999999999997665 46677899999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ....                                                                            
T Consensus       150 ~~~~----------------------------------------------------------------------------  153 (333)
T cd05600         150 GIVT----------------------------------------------------------------------------  153 (333)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            5330                                                                            


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                    .....+||+.|+|||.+.+..++.++|||||||+||||+++   |.....
T Consensus       154 ------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~  203 (333)
T cd05600         154 ------------------------------YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTP  203 (333)
T ss_pred             ------------------------------ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCH
Confidence                                          00145789999999999999999999999999999999986   433222


Q ss_pred             HHHH--HHhccccCCCCCC----CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          535 LAAA--MSDLRDRILPPSF----LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~--~~~~~~~~~p~~~----~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ....  +.........|..    ...++++.+|+.+||..+|.+||++.++++||||...
T Consensus       204 ~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~  263 (333)
T cd05600         204 NETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNHPFFKEV  263 (333)
T ss_pred             HHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHhCcccCCC
Confidence            2211  1111111111211    2457889999999999999999999999999999864

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.96  E-value=6.8e-30  Score=297.00  Aligned_cols=278  Identities=16%  Similarity=0.117  Sum_probs=179.7

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++...+    .+..++.|+.......  .......++..++....||+++..+.....+...+         
T Consensus        11 ~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~---------   77 (363)
T cd05628          11 RGAFGEVRLVQKKD----TGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLY---------   77 (363)
T ss_pred             eCCCEEEEEEEECC----CCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEE---------
Confidence            35789999987632    3455666665322211  11122334556677889999998766544333333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+||||+||+|.++|...+ .++..+++.++.||+.||+|||++||+||||||+||||+.++.+||+|||+++
T Consensus        78 -------lv~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~  149 (363)
T cd05628          78 -------LIMEFLPGGDMMTLLMKKD-TLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCT  149 (363)
T ss_pred             -------EEEcCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCcc
Confidence                   3899999999999997764 46777999999999999999999999999999999999999999999999998


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+..........                          ..+...                        ..++....    
T Consensus       150 ~~~~~~~~~~~~--------------------------~~~~~~------------------------~~~~~~~~----  175 (363)
T cd05628         150 GLKKAHRTEFYR--------------------------NLNHSL------------------------PSDFTFQN----  175 (363)
T ss_pred             cccccccccccc--------------------------cccccc------------------------cccccccc----
Confidence            654211000000                          000000                        00000000    


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                    +....................+||+.|+|||++.+..++.++|||||||+||||++|   |.+...
T Consensus       176 --------------~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~  241 (363)
T cd05628         176 --------------MNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETP  241 (363)
T ss_pred             --------------cccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCH
Confidence                          000000000000001112356899999999999999999999999999999999986   443333


Q ss_pred             HHHHHHhcc--cc-CCCCCCCCCChhHHHHHHhccccCCC---CCCCHHHHhhhhhhhhh
Q 001366          535 LAAAMSDLR--DR-ILPPSFLSENPKEAGFCLWQLHPEPL---SRPTTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~--~~-~~p~~~~~~~~~~~~li~~lL~~dP~---~Rpsa~eiL~~~~~~~~  588 (1092)
                      .........  .. .+|+ ....++++.+|+.+|+. +|.   .||++.||++||||...
T Consensus       242 ~~~~~~i~~~~~~~~~p~-~~~~s~~~~~li~~l~~-~~~~r~~r~~~~ei~~hp~f~~~  299 (363)
T cd05628         242 QETYKKVMNWKETLIFPP-EVPISEKAKDLILRFCC-EWEHRIGAPGVEEIKTNPFFEGV  299 (363)
T ss_pred             HHHHHHHHcCcCcccCCC-cCCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhCCCCCCCC
Confidence            222222221  22 2333 33457889999999875 444   46899999999999764

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.3e-28  Score=283.17  Aligned_cols=285  Identities=19%  Similarity=0.299  Sum_probs=244.8

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      +...++.|.+++|+|.-..++++-.+|.|++||+.-       .........|.++|..|+|+|. ..+++||+.|-+|+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM-------~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIk   76 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-------GTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIK   76 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhh-------hhHHhhhhccCCccceeeecCC-CCeEEecCCccEEE
Confidence            345567889999999999999999999999999863       1222334579999999999998 88999999999999


Q ss_pred             EEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEE
Q 001366          855 LWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      +|+..+.+|+.++.||-+-|..+.|++ .--+++|+|+|.+|+||+..+++|+..+. |..-|.|.+|+|... +++++|
T Consensus        77 VWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaS  154 (1202)
T KOG0292|consen   77 VWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSAS  154 (1202)
T ss_pred             EEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEec
Confidence            999999999999999999999999998 66689999999999999999999999998 566799999999775 899999


Q ss_pred             CCCeEEEEEcCCCCc----------------------------ceEEecCCCCCeEEEEEcC-CCEEEEEECCCeEEEEE
Q 001366          934 ADYRTYCYDLRNARA----------------------------PWCVLAGHEKAVSYVKFLD-SGTLVTASTDNKLKLWD  984 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~----------------------------~~~~l~~H~~~V~~v~fs~-~~~L~Sgs~Dg~I~vWD  984 (1092)
                      -|.+|+|||+...++                            ...++.||...|..++|++ --.|+||+.|..|++|.
T Consensus       155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWr  234 (1202)
T KOG0292|consen  155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR  234 (1202)
T ss_pred             ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEE
Confidence            999999999863211                            1245789999999999994 45789999999999999


Q ss_pred             cCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCC
Q 001366          985 LKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLF 1064 (1092)
Q Consensus       985 l~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~ 1064 (1092)
                      +...      ....+-+..||.+.|.++-|+|...+|++.|+|++|+|||....+.+.+++-             . +..
T Consensus       235 mnet------KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr-------------e-ndR  294 (1202)
T KOG0292|consen  235 MNET------KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR-------------E-NDR  294 (1202)
T ss_pred             eccc------cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-------------c-CCe
Confidence            9743      2345667889999999999999999999999999999999999999988862             2 345


Q ss_pred             EEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1065 VSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1065 V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      -|.++-+|..+++|+|...|.+ ||.
T Consensus       295 FW~laahP~lNLfAAgHDsGm~-VFk  319 (1202)
T KOG0292|consen  295 FWILAAHPELNLFAAGHDSGMI-VFK  319 (1202)
T ss_pred             EEEEEecCCcceeeeecCCceE-EEE
Confidence            7999999999998888766654 443

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.96  E-value=9.2e-30  Score=292.06  Aligned_cols=243  Identities=17%  Similarity=0.159  Sum_probs=177.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|+||++....    .+..++.|+..............++..++...+|||++.++.....+...+           
T Consensus        15 ~G~~g~V~~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-----------   79 (331)
T cd06649          15 AGNGGVVTKVQHKP----SGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS-----------   79 (331)
T ss_pred             CCCCEEEEEEEECC----CCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE-----------
Confidence            34689999988632    344455555432222222344556677788899999998877655433333           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhc-CccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQ-GVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~-gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .+|||++|++|.++++... .++...+..++.||+.||.|||++ +|+||||||+|||++.++.+|++|||+++.
T Consensus        80 -----lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  153 (331)
T cd06649          80 -----ICMEHMDGGSLDQVLKEAK-RIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  153 (331)
T ss_pred             -----EEeecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCccccc
Confidence                 3799999999999997654 467778999999999999999986 699999999999999999999999998765


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +.+..                                                                           
T Consensus       154 ~~~~~---------------------------------------------------------------------------  158 (331)
T cd06649         154 LIDSM---------------------------------------------------------------------------  158 (331)
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            33100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH-
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA-  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~-  534 (1092)
                                                    .....||+.|+|||.+.+..++.++|||||||+||||+++   |..... 
T Consensus       159 ------------------------------~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~  208 (331)
T cd06649         159 ------------------------------ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAK  208 (331)
T ss_pred             ------------------------------cccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                          0134688999999999998999999999999999999986   332111 


Q ss_pred             -HHHHHH-------------------------------------------hccccCCCC-CCCCCChhHHHHHHhccccC
Q 001366          535 -LAAAMS-------------------------------------------DLRDRILPP-SFLSENPKEAGFCLWQLHPE  569 (1092)
Q Consensus       535 -~~~~~~-------------------------------------------~~~~~~~p~-~~~~~~~~~~~li~~lL~~d  569 (1092)
                       ......                                           .+.....|. .....++++.+|+.+||.+|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~  288 (331)
T cd06649         209 ELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKN  288 (331)
T ss_pred             HHHHHhcccccccccCCccccCcccccccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCC
Confidence             111110                                           000000111 01134678999999999999


Q ss_pred             CCCCCCHHHHhhhhhhhhh
Q 001366          570 PLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       570 P~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |++|||+.+||+||||...
T Consensus       289 P~~Rpt~~ell~h~~~~~~  307 (331)
T cd06649         289 PAERADLKMLMNHTFIKRS  307 (331)
T ss_pred             cccCCCHHHHhcChHHhhc
Confidence            9999999999999999764

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.96  E-value=4.3e-30  Score=292.84  Aligned_cols=242  Identities=17%  Similarity=0.155  Sum_probs=175.0

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhc-cCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVA-SNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .+|.|.||++...+    .+..++.|+.....  ..........+...+. ...||+++.++.....+...+        
T Consensus         5 ~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~--------   72 (316)
T cd05619           5 KGSFGKVFLAELKG----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLF--------   72 (316)
T ss_pred             eCCCEEEEEEEECC----CCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEE--------
Confidence            46789999998632    24455555442211  1112222333333343 358999998776654433333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              ++|||++|++|.+++.... .++..++..++.||+.||+|||++||+||||||+|||++.++.+|++|||++
T Consensus        73 --------lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~  143 (316)
T cd05619          73 --------FVMEYLNGGDLMFHIQSCH-KFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMC  143 (316)
T ss_pred             --------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcc
Confidence                    3899999999999997654 4677789999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       144 ~~~~~~--------------------------------------------------------------------------  149 (316)
T cd05619         144 KENMLG--------------------------------------------------------------------------  149 (316)
T ss_pred             eECCCC--------------------------------------------------------------------------
Confidence            642200                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                   ........||+.|+|||++.+..++.++|||||||+||||++|   |....
T Consensus       150 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~  200 (316)
T cd05619         150 -----------------------------DAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHD  200 (316)
T ss_pred             -----------------------------CCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCC
Confidence                                         0001145689999999999998999999999999999999986   43332


Q ss_pred             HHHHHHHhccc-cCCCCCCCCCChhHHHHHHhccccCCCCCCCHH-HHhhhhhhhhh
Q 001366          534 ALAAAMSDLRD-RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTR-EILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~-~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~-eiL~~~~~~~~  588 (1092)
                      .. ..+..+.. ....|  ...+.++.+|+.+||+++|.+||++. ++++||||...
T Consensus       201 ~~-~~~~~i~~~~~~~~--~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~h~~~~~~  254 (316)
T cd05619         201 EE-ELFQSIRMDNPCYP--RWLTREAKDILVKLFVREPERRLGVKGDIRQHPFFREI  254 (316)
T ss_pred             HH-HHHHHHHhCCCCCC--ccCCHHHHHHHHHHhccCHhhcCCChHHHHcCcccCCC
Confidence            22 22222221 11112  23567889999999999999999996 99999999774

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=1.1e-27  Score=255.99  Aligned_cols=322  Identities=15%  Similarity=0.201  Sum_probs=262.4

Q ss_pred             hhccchhhhhhccccccCCCCcE--EeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 001366          726 LRDRENLFLAQQDQEIQNPTDRL--GAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKI  803 (1092)
Q Consensus       726 l~~~~~~~~~~~~~~~~~~~~~l--~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I  803 (1092)
                      +..|...+-++.    -+|+..+  ++.-|..--+|+..+.+...     .+.+|.+.|+++.|+.+|.+||||+.+|.|
T Consensus        60 F~~H~~svFavs----l~P~~~l~aTGGgDD~AflW~~~~ge~~~-----eltgHKDSVt~~~FshdgtlLATGdmsG~v  130 (399)
T KOG0296|consen   60 FDKHTDSVFAVS----LHPNNNLVATGGGDDLAFLWDISTGEFAG-----ELTGHKDSVTCCSFSHDGTLLATGDMSGKV  130 (399)
T ss_pred             hhhcCCceEEEE----eCCCCceEEecCCCceEEEEEccCCccee-----EecCCCCceEEEEEccCceEEEecCCCccE
Confidence            344544443332    3455555  44567777899988877443     456999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCC
Q 001366          804 KIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVH  883 (1092)
Q Consensus       804 ~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~  883 (1092)
                      +||+..+..       ........-..|.=++|+|. ...|+.|+.||.|.+|.+.++...+.+.+|..++++=.|.| +
T Consensus       131 ~v~~~stg~-------~~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p-d  201 (399)
T KOG0296|consen  131 LVFKVSTGG-------EQWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP-D  201 (399)
T ss_pred             EEEEcccCc-------eEEEeecccCceEEEEeccc-ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC-C
Confidence            999987622       11122234577888999996 89999999999999999999888899999999999999999 8


Q ss_pred             CCEEEEEeCCCcEEEEecCCCceeeeEec--CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEec-------
Q 001366          884 PTKLASGSDDCSVKLWNINEKNSLATIKN--IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA-------  954 (1092)
Q Consensus       884 ~~~laSgs~Dg~I~iWDl~~~~~l~~l~~--~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~-------  954 (1092)
                      |+.++++..||+|++||..++.++..+..  +....|+.++..+. .++.|+.++.+++....+++.. ....       
T Consensus       202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-~~~~g~~e~~~~~~~~~sgKVv-~~~n~~~~~l~  279 (399)
T KOG0296|consen  202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-TLTKGNSEGVACGVNNGSGKVV-NCNNGTVPELK  279 (399)
T ss_pred             CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-eeEeccCCccEEEEccccceEE-EecCCCCcccc
Confidence            99999999999999999999999998873  44577888888885 8888999999998887776532 2222       


Q ss_pred             -CCCCCeEEEEEcC----CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCc
Q 001366          955 -GHEKAVSYVKFLD----SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNE 1029 (1092)
Q Consensus       955 -~H~~~V~~v~fs~----~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~ 1029 (1092)
                       .+...+.+|.|.+    =...++|+-||+|.|||+..         ..++....|...|..+.|-+ ..+|++++.||.
T Consensus       280 ~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~---------~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~  349 (399)
T KOG0296|consen  280 PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA---------STLRHICEHEDGVTKLKWLN-TDYLLTACANGK  349 (399)
T ss_pred             ccchhhhhhhhhcccccccchhhcccccceEEEEeccc---------chhheeccCCCceEEEEEcC-cchheeeccCce
Confidence             4555666776652    23578999999999999983         23455667999999999999 779999999999


Q ss_pred             EEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1030 VYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1030 I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |+.||..+|+.+..+              .+|...|..++.+|+.++++|+|.|+..+||++
T Consensus       350 v~~wDaRtG~l~~~y--------------~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  350 VRQWDARTGQLKFTY--------------TGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             EEeeeccccceEEEE--------------ecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            999999999988765              488999999999999999999999999999985

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.96  E-value=8.6e-30  Score=285.10  Aligned_cols=245  Identities=16%  Similarity=0.144  Sum_probs=176.7

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|+||++...    ..+..+++|.........  .......+..++...+||+++.+......+...+         
T Consensus         3 ~G~~g~Vy~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~---------   69 (280)
T cd05608           3 KGGFGEVSACQMR----ATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLC---------   69 (280)
T ss_pred             CCCceeEEEEEEc----cCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEE---------
Confidence            4688999998762    224455555443221111  1222345666788889999997655544333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                             .+|||++|++|.+++..   ....+++..++.++.||+.||+|||++||+||||||+||+++.++.+|++|||
T Consensus        70 -------lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg  142 (280)
T cd05608          70 -------LVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLG  142 (280)
T ss_pred             -------EEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCc
Confidence                   38999999999998843   33457888999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.+....                                                                       
T Consensus       143 ~~~~~~~~~-----------------------------------------------------------------------  151 (280)
T cd05608         143 LAVELKDGQ-----------------------------------------------------------------------  151 (280)
T ss_pred             cceecCCCC-----------------------------------------------------------------------
Confidence            886543100                                                                       


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCc
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                      .......||+.|+|||.+.+..++.++|||||||+||||+++   |..
T Consensus       152 --------------------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~  199 (280)
T cd05608         152 --------------------------------SKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRA  199 (280)
T ss_pred             --------------------------------ccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCC
Confidence                                            000134688999999999999999999999999999999986   432


Q ss_pred             HHH---HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          532 ERA---LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       532 ~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      ...   .......+.... .......++.+.+|+.+||+.||++||     +++++++||||+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h~~~~~~  263 (280)
T cd05608         200 RGEKVENKELKQRILNDS-VTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDL  263 (280)
T ss_pred             CCcchhHHHHHHhhcccC-CCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcChhhhcC
Confidence            211   111111111111 111234578899999999999999999     88999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.96  E-value=8.3e-30  Score=285.72  Aligned_cols=242  Identities=15%  Similarity=0.163  Sum_probs=173.0

Q ss_pred             cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|.||++...+    .+..++.|++.... .........++..++...+|||++.+.+....+...+           
T Consensus        12 g~~~~v~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-----------   76 (287)
T cd07848          12 GAYGVVLKCRHKE----TKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLY-----------   76 (287)
T ss_pred             cCCEEEEEEEECC----CCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEE-----------
Confidence            5789999997632    24455555543221 1222233445667788889999998765543332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           ++|||++|+.|..+... ...++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++..
T Consensus        77 -----lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~  150 (287)
T cd07848          77 -----LVFEYVEKNMLELLEEM-PNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNL  150 (287)
T ss_pred             -----EEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccc
Confidence                 38999999877665543 345777789999999999999999999999999999999999999999999988764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       151 ~~~~----------------------------------------------------------------------------  154 (287)
T cd07848         151 SEGS----------------------------------------------------------------------------  154 (287)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALA  536 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~  536 (1092)
                                                ........||++|+|||++.+..++.++|||||||+||||++|   |+......
T Consensus       155 --------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~  208 (287)
T cd07848         155 --------------------------NANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEID  208 (287)
T ss_pred             --------------------------cccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHH
Confidence                                      0001134688999999999998899999999999999999986   44332222


Q ss_pred             HHHHhcc--c------------------cCCCCC----------CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          537 AAMSDLR--D------------------RILPPS----------FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       537 ~~~~~~~--~------------------~~~p~~----------~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .......  .                  ...|..          ....++.+.+||.+||++||.+|||++++|+||||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         209 QLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             HHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            1111100  0                  001100          11245678999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.96  E-value=5.5e-30  Score=299.87  Aligned_cols=290  Identities=15%  Similarity=0.159  Sum_probs=184.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++....    .+..++.|+......  ........++..++....||+++.++.....+...+         
T Consensus        11 ~G~~g~Vy~a~~~~----~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~---------   77 (382)
T cd05625          11 IGAFGEVCLARKVD----TKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLY---------   77 (382)
T ss_pred             eCCCEEEEEEEECC----CCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEE---------
Confidence            35789999997632    244455554422111  111223344566778889999998877755443333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++||||+||+|.++|...+ .+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus        78 -------lv~E~~~gg~L~~~l~~~~-~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~  149 (382)
T cd05625          78 -------FVMDYIPGGDMMSLLIRMG-IFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (382)
T ss_pred             -------EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCc
Confidence                   3899999999999997664 46677899999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+............+....      ....          +...                            .+.+.... 
T Consensus       150 ~~~~~~~~~~~~~~~~~~~------~~~~----------~~~~----------------------------~~~~~~~~-  184 (382)
T cd05625         150 GFRWTHDSKYYQSGDHVRQ------DSMD----------FSNE----------------------------WGDPANCR-  184 (382)
T ss_pred             ccccccccccccccccccc------cccc----------cccc----------------------------cccccccc-
Confidence            5432111100000000000      0000          0000                            00000000 


Q ss_pred             cccccccCCCCCccCCCCCccccc-ccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNT-AQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                      .....            .+..... ...........+||++|+|||++.+..++.++|||||||+||||++|   |....
T Consensus       185 ~~~~~------------~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~  252 (382)
T cd05625         185 CGDRL------------KPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQT  252 (382)
T ss_pred             ccccc------------cchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCC
Confidence            00000            0000000 00001111256899999999999999999999999999999999986   54444


Q ss_pred             HHHHHHHhcc--ccCCCCCCCCCChhHHHHHHhccccCCCCCCC---HHHHhhhhhhhhh
Q 001366          534 ALAAAMSDLR--DRILPPSFLSENPKEAGFCLWQLHPEPLSRPT---TREILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~--~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps---a~eiL~~~~~~~~  588 (1092)
                      .....+..+.  .....|.....++++.+|+.+|+ .+|.+|++   +.++++||||...
T Consensus       253 ~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~  311 (382)
T cd05625         253 PLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTI  311 (382)
T ss_pred             HHHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCc
Confidence            4333333332  22222334456899999999986 59999987   9999999999663

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.96  E-value=8.9e-30  Score=291.27  Aligned_cols=242  Identities=16%  Similarity=0.116  Sum_probs=175.0

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC-chhhHhh----hhhhhhhccCCCCCCCccccceecCCCCCCCccCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALK----AAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTG  294 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1092)
                      .++.|.||++...    ..+..++.|+...... .......    .+...++...+|||++.++.........+      
T Consensus         9 ~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~------   78 (324)
T cd05589           9 RGHFGKVLLAEYK----KTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVC------   78 (324)
T ss_pred             ecCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEE------
Confidence            3578999998752    2345566655432111 1111111    12222345668999998776544333333      


Q ss_pred             CCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          295 VPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       295 ~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                                .+|||++|++|..++...  .++..+++.++.||+.||+|||++||+||||||+||+++.++.+||+|||
T Consensus        79 ----------lv~E~~~~~~L~~~~~~~--~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg  146 (324)
T cd05589          79 ----------FVMEYAAGGDLMMHIHTD--VFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFG  146 (324)
T ss_pred             ----------EEEcCCCCCcHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCccc
Confidence                      389999999999998653  57888999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.....                                                                        
T Consensus       147 ~~~~~~~~------------------------------------------------------------------------  154 (324)
T cd05589         147 LCKEGMGF------------------------------------------------------------------------  154 (324)
T ss_pred             CCccCCCC------------------------------------------------------------------------
Confidence            87642200                                                                        


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCc
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                     .......+||+.|+|||.+.+..++.++|||||||+||||++|   |..
T Consensus       155 -------------------------------~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~  203 (324)
T cd05589         155 -------------------------------GDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPG  203 (324)
T ss_pred             -------------------------------CCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCC
Confidence                                           0001145789999999999998999999999999999999986   444


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          532 ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      .................|  ...++.+.+|+.+||++||.+||     ++.++++||||...
T Consensus       204 ~~~~~~~~~i~~~~~~~p--~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~~  263 (324)
T cd05589         204 DDEEEVFDSIVNDEVRYP--RFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDI  263 (324)
T ss_pred             CCHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCCC
Confidence            333332222222222222  23478899999999999999999     68999999999764

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.96  E-value=1.9e-29  Score=300.18  Aligned_cols=250  Identities=14%  Similarity=0.141  Sum_probs=171.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|+||+|...+    .+..++.|.....     .....++..++...+|||++.+.+.........   ...-..  
T Consensus        76 ~G~fg~Vy~~~~~~----~~~~vAiK~i~~~-----~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~---~~~~~~--  141 (440)
T PTZ00036         76 NGSFGVVYEAICID----TSEKVAIKKVLQD-----PQYKNRELLIMKNLNHINIIFLKDYYYTECFKK---NEKNIF--  141 (440)
T ss_pred             eCCCEEEEEEEECC----CCCEEEEEEEecC-----cchHHHHHHHHHhcCCCCCcceeeeEeeccccc---CCCceE--
Confidence            34789999998632    2445566544221     112234667788889999998654322111000   000000  


Q ss_pred             ccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC-cEEEecccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN-QVKYIGPII  375 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~-~vkl~Dfg~  375 (1092)
                         ...+|||+.| +|.+++..   .+..++...++.|+.||+.||+|||++||+||||||+||||+..+ .+||+|||+
T Consensus       142 ---l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGl  217 (440)
T PTZ00036        142 ---LNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGS  217 (440)
T ss_pred             ---EEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeecccc
Confidence               1137999986 78777753   345678889999999999999999999999999999999998665 699999999


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++.+...                                                                         
T Consensus       218 a~~~~~~-------------------------------------------------------------------------  224 (440)
T PTZ00036        218 AKNLLAG-------------------------------------------------------------------------  224 (440)
T ss_pred             chhccCC-------------------------------------------------------------------------
Confidence            8764310                                                                         


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCc
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                     ......+||++|+|||++.+ ..++.++|||||||+||||++|   |.+
T Consensus       225 -------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~  273 (440)
T PTZ00036        225 -------------------------------QRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSG  273 (440)
T ss_pred             -------------------------------CCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence                                           00013568999999999877 4689999999999999999996   443


Q ss_pred             HHHHHHHHHhccc------------------cCCCC--------CCC-CCChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          532 ERALAAAMSDLRD------------------RILPP--------SFL-SENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       532 ~~~~~~~~~~~~~------------------~~~p~--------~~~-~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      ..........+..                  ..+|.        .++ ..++++.+||.+||.+||.+|||+.|+|+|||
T Consensus       274 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~  353 (440)
T PTZ00036        274 QSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPF  353 (440)
T ss_pred             CChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChh
Confidence            3222222111110                  00111        011 24567889999999999999999999999999


Q ss_pred             hhhhhcc
Q 001366          585 TNEFQEV  591 (1092)
Q Consensus       585 ~~~~~~~  591 (1092)
                      |.+....
T Consensus       354 f~~~~~~  360 (440)
T PTZ00036        354 FDDLRDP  360 (440)
T ss_pred             HHhhhcc
Confidence            9876553

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.96  E-value=6.9e-30  Score=292.15  Aligned_cols=242  Identities=17%  Similarity=0.170  Sum_probs=172.9

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCC-CCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPK-PVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .+|.|.||++...+    .+..++.|+......  ..+......+..++....|++ ++.+......+...+        
T Consensus        10 ~G~~g~Vy~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~--------   77 (324)
T cd05587          10 KGSFGKVMLAERKG----TDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY--------   77 (324)
T ss_pred             eccCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEE--------
Confidence            35789999998633    244566665432111  122233344455566666654 444433332222222        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              .+|||++|++|.+++...+ .+++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++
T Consensus        78 --------lv~E~~~~g~L~~~~~~~~-~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~  148 (324)
T cd05587          78 --------FVMEYVNGGDLMYHIQQVG-KFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMC  148 (324)
T ss_pred             --------EEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcc
Confidence                    3899999999999997665 4677799999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       149 ~~~~~~--------------------------------------------------------------------------  154 (324)
T cd05587         149 KENIFG--------------------------------------------------------------------------  154 (324)
T ss_pred             eecCCC--------------------------------------------------------------------------
Confidence            642200                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                   .......+||+.|+|||++.+..++.++|||||||+||||++|   |....
T Consensus       155 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~  205 (324)
T cd05587         155 -----------------------------GKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGED  205 (324)
T ss_pred             -----------------------------CCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC
Confidence                                         0001145789999999999999999999999999999999986   44433


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH-----HHHhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT-----REILQSEVTNE  587 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa-----~eiL~~~~~~~  587 (1092)
                      .............  +.....++++.+|+.+||+++|.+|+++     +++++||||..
T Consensus       206 ~~~~~~~i~~~~~--~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~  262 (324)
T cd05587         206 EDELFQSIMEHNV--SYPKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRR  262 (324)
T ss_pred             HHHHHHHHHcCCC--CCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCC
Confidence            3333322222221  1222457888999999999999999986     89999999976

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.96  E-value=1.7e-29  Score=290.57  Aligned_cols=247  Identities=15%  Similarity=0.135  Sum_probs=169.8

Q ss_pred             hccccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCC
Q 001366          219 TLKGKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      ..+|.|.||++..... -...+..++.|+..............++...+... +|||++.++.........         
T Consensus        16 G~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~---------   86 (338)
T cd05102          16 GHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGP---------   86 (338)
T ss_pred             ccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCc---------
Confidence            3447899999863100 01113445665553222222223344556666666 899999876543311110         


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcC-----------------------------------------------------
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARG-----------------------------------------------------  323 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~-----------------------------------------------------  323 (1092)
                            ...+||||+||+|.++|....                                                     
T Consensus        87 ------~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
T cd05102          87 ------LMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPP  160 (338)
T ss_pred             ------eEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccc
Confidence                  113799999999999996532                                                     


Q ss_pred             --------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhh
Q 001366          324 --------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRL  395 (1092)
Q Consensus       324 --------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~  395 (1092)
                              ..++..+++.++.||+.||+|||++||+||||||+|||++.++.+|++|||+++........          
T Consensus       161 ~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~----------  230 (338)
T cd05102         161 QETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY----------  230 (338)
T ss_pred             hhccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcch----------
Confidence                    23556678899999999999999999999999999999999999999999998764310000          


Q ss_pred             hccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCC
Q 001366          396 RRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSS  475 (1092)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  475 (1092)
                                                                                                      
T Consensus       231 --------------------------------------------------------------------------------  230 (338)
T cd05102         231 --------------------------------------------------------------------------------  230 (338)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCC
Q 001366          476 PLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSF  551 (1092)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~  551 (1092)
                                 .......++..|+|||++.+..++.++|||||||+||||++ +   |............+.....+...
T Consensus       231 -----------~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  299 (338)
T cd05102         231 -----------VRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAP  299 (338)
T ss_pred             -----------hcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCCC
Confidence                       00002345677999999999999999999999999999985 4   44322222222333333333333


Q ss_pred             CCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          552 LSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       552 ~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ...++.+.+|+.+||++||.+|||+.+|++
T Consensus       300 ~~~~~~l~~li~~cl~~dp~~RPs~~el~~  329 (338)
T cd05102         300 ENATPEIYRIMLACWQGDPKERPTFSALVE  329 (338)
T ss_pred             CCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            455788999999999999999999999987

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.96  E-value=6.7e-30  Score=292.99  Aligned_cols=243  Identities=17%  Similarity=0.127  Sum_probs=173.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .+|.|.||++....    .+..++.|+......  ........++..++... +|||++.++.....+...+        
T Consensus         5 ~G~~g~V~~~~~~~----~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~--------   72 (329)
T cd05588           5 RGSYAKVLLVELKK----TRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLF--------   72 (329)
T ss_pred             eCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEE--------
Confidence            46789999987632    345556655432111  11112223344444444 7999998766544333333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              ++||||+|++|.+++...+ .++...++.|+.||+.||+|||++||+||||||+||+++.++.+||+|||++
T Consensus        73 --------lv~e~~~~g~L~~~~~~~~-~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~  143 (329)
T cd05588          73 --------FVIEFVSGGDLMFHMQRQR-KLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMC  143 (329)
T ss_pred             --------EEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccc
Confidence                    3899999999999997654 5777799999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       144 ~~~~~~--------------------------------------------------------------------------  149 (329)
T cd05588         144 KEGIRP--------------------------------------------------------------------------  149 (329)
T ss_pred             cccccC--------------------------------------------------------------------------
Confidence            642200                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHH---
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSER---  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~---  533 (1092)
                                                   .......+||+.|+|||++.+..++.++|||||||++|||+++..+..   
T Consensus       150 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~  200 (329)
T cd05588         150 -----------------------------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVG  200 (329)
T ss_pred             -----------------------------CCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCccccc
Confidence                                         000114578999999999999999999999999999999998622211   


Q ss_pred             --------HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC------HHHHhhhhhhhh
Q 001366          534 --------ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT------TREILQSEVTNE  587 (1092)
Q Consensus       534 --------~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps------a~eiL~~~~~~~  587 (1092)
                              ........+.... ++.....++++.+|+.+||++||.+||+      ++++++||||..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~  267 (329)
T cd05588         201 MSDNPDQNTEDYLFQVILEKQ-IRIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRN  267 (329)
T ss_pred             ccccccccchHHHHHHHHcCC-CCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCC
Confidence                    1111122222211 1112245788999999999999999987      789999999965

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.4e-29  Score=294.46  Aligned_cols=281  Identities=14%  Similarity=0.102  Sum_probs=184.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++....    .+..++.|+......  ........++..++...+|||++.++.....+...+         
T Consensus        11 ~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~---------   77 (364)
T cd05599          11 RGAFGEVRLVQKKD----TGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLY---------   77 (364)
T ss_pred             ecCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEE---------
Confidence            35789999988632    345566665532211  112222345667788889999998776655444333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++||||.|++|.++|...+ .+++.+++.|+.||+.||+|||++||+||||||+|||++.++.+|++|||+++
T Consensus        78 -------lv~E~~~~g~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~  149 (364)
T cd05599          78 -------LIMEYLPGGDMMTLLMKKD-TFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCT  149 (364)
T ss_pred             -------EEECCCCCcHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccce
Confidence                   3899999999999997765 47777999999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC-CC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS-HN  456 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~  456 (1092)
                      .+..........                          .....                    .. ....++..... ..
T Consensus       150 ~~~~~~~~~~~~--------------------------~~~~~--------------------~~-~~~~~~~~~~~~~~  182 (364)
T cd05599         150 GLKKSHRTEFYR--------------------------ILSHA--------------------LP-SNFLDFISKPMSSK  182 (364)
T ss_pred             eccccccccccc--------------------------ccccc--------------------cc-cccccccccccccc
Confidence            654211100000                          00000                    00 00000000000 00


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                      ...                   ..............+||++|+|||++.+..++.++|||||||+||||++|   |....
T Consensus       183 ~~~-------------------~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~  243 (364)
T cd05599         183 RKA-------------------ETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDN  243 (364)
T ss_pred             ccc-------------------cchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCC
Confidence            000                   00000000111246899999999999999999999999999999999986   43333


Q ss_pred             HHHHHHHhcc--ccCCCCCCCCCChhHHHHHHhccccCCCCCCC---HHHHhhhhhhhhh
Q 001366          534 ALAAAMSDLR--DRILPPSFLSENPKEAGFCLWQLHPEPLSRPT---TREILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~--~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps---a~eiL~~~~~~~~  588 (1092)
                      ........+.  .....|.....++.+.+||.+||. +|.+|++   +.++|+||||...
T Consensus       244 ~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~  302 (364)
T cd05599         244 PQETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGV  302 (364)
T ss_pred             HHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCC
Confidence            3222222222  111122233457889999999996 9999998   9999999999764

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.96  E-value=8.1e-30  Score=292.29  Aligned_cols=244  Identities=17%  Similarity=0.122  Sum_probs=173.9

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccC-c-hhhHhhhhhhhhhc-cCCCCCCCccccceecCCCCCCCccCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-P-SDAALKAAGAMMVA-SNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ..+|.|.||++....    .+..++.|+...... . ........+..++. ..+|||++.++.....+...+       
T Consensus         4 G~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~-------   72 (329)
T cd05618           4 GRGSYAKVLLVRLKK----TERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF-------   72 (329)
T ss_pred             eeCCCeEEEEEEECC----CCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEE-------
Confidence            356889999997632    244555555432211 1 11122233333443 348999998776655443333       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               .+|||++|++|.+++...+ .++...++.|+.||+.||+|||++||+||||||+||+++.++.+||+|||+
T Consensus        73 ---------lv~E~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~  142 (329)
T cd05618          73 ---------FVIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM  142 (329)
T ss_pred             ---------EEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCc
Confidence                     3899999999999987654 467779999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++......                                                                        
T Consensus       143 ~~~~~~~~------------------------------------------------------------------------  150 (329)
T cd05618         143 CKEGLRPG------------------------------------------------------------------------  150 (329)
T ss_pred             cccccCCC------------------------------------------------------------------------
Confidence            86422000                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHH--
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSER--  533 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~--  533 (1092)
                                                     ......+||+.|+|||++.+..++.++|||||||++|||+++..+..  
T Consensus       151 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~  199 (329)
T cd05618         151 -------------------------------DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV  199 (329)
T ss_pred             -------------------------------CccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccC
Confidence                                           00114578999999999999999999999999999999998632221  


Q ss_pred             ---------HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC------HHHHhhhhhhhh
Q 001366          534 ---------ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT------TREILQSEVTNE  587 (1092)
Q Consensus       534 ---------~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps------a~eiL~~~~~~~  587 (1092)
                               ........+.... .......++++.+|+.+||++||.+||+      +.++++||||..
T Consensus       200 ~~~~~~~~~~~~~~~~~i~~~~-~~~p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~  267 (329)
T cd05618         200 GSSDNPDQNTEDYLFQVILEKQ-IRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN  267 (329)
T ss_pred             CCcCCcccccHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCC
Confidence                     1111111111111 1112245788999999999999999998      479999999965

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=9.7e-30  Score=285.76  Aligned_cols=252  Identities=17%  Similarity=0.179  Sum_probs=181.9

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhh-hhhhhhhccC-CCCCCCccccceecCCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALK-AAGAMMVASN-ASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  287 (1092)
                      ++|.+.+.++  |.-.||+...+|    ++...+.+|..- -.+-+..-. .-+.++|.+. -+-+|+.+++--+.+..+
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~----~~iyalkkv~~~-~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~l  435 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSD----KQIYALKKVVLL-EADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYL  435 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCC----CcchhhhHHHHh-hcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceE
Confidence            5788877776  777999999876    344444444321 112222222 2234556655 346788777777766666


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      +                 +..+|...+|..+|+.....++....+.|.+|||.+|.++|..||||.||||.|||| -.|.
T Consensus       436 Y-----------------mvmE~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLl-VkG~  497 (677)
T KOG0596|consen  436 Y-----------------MVMECGDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLL-VKGR  497 (677)
T ss_pred             E-----------------EEeecccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEE-Eeee
Confidence            6                 466788899999998887766655899999999999999999999999999999999 5799


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||||||+|+.+....+.                                                              
T Consensus       498 LKLIDFGIA~aI~~DTTs--------------------------------------------------------------  515 (677)
T KOG0596|consen  498 LKLIDFGIANAIQPDTTS--------------------------------------------------------------  515 (677)
T ss_pred             EEeeeechhcccCccccc--------------------------------------------------------------
Confidence            999999999876521100                                                              


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-----------CCCccccch
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-----------VCTTSSNIY  516 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-----------~~t~~sDIw  516 (1092)
                                                             ---.+++||.-|||||.+...           +++.+||||
T Consensus       516 ---------------------------------------I~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvW  556 (677)
T KOG0596|consen  516 ---------------------------------------IVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVW  556 (677)
T ss_pred             ---------------------------------------eeeccccCcccccCHHHHhhccccccCCCcceeecCccchh
Confidence                                                   000168999999999998652           267999999


Q ss_pred             hhhHHHHHHcCCCCcH---HHHHHHHHhcccc---CCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          517 SLGVLFFELFGRFDSE---RALAAAMSDLRDR---ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       517 SLGvll~ell~~f~~~---~~~~~~~~~~~~~---~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |||||||+|+.+-++.   ....+.+..+...   +..|..+. +.++.++++.||..||.+||+..++|+|||+...
T Consensus       557 SLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~-~~~li~~mK~CL~rdPkkR~si~eLLqhpFl~~~  633 (677)
T KOG0596|consen  557 SLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPE-NDELIDVMKCCLARDPKKRWSIPELLQHPFLQIQ  633 (677)
T ss_pred             hhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCC-chHHHHHHHHHHhcCcccCCCcHHHhcCcccccc
Confidence            9999999999764433   3333444444432   22223322 2237899999999999999999999999998763

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.9e-27  Score=245.55  Aligned_cols=288  Identities=18%  Similarity=0.236  Sum_probs=228.4

Q ss_pred             hhhccchhhhhhccccccCCC-Cc--EEeEcCCeEEEEEccc---ceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEe
Q 001366          725 LLRDRENLFLAQQDQEIQNPT-DR--LGAFFDGLCKYARYSK---FEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAG  798 (1092)
Q Consensus       725 ~l~~~~~~~~~~~~~~~~~~~-~~--l~~~~D~~~k~w~~~~---~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg  798 (1092)
                      .+.+|.+.+..+    .++|. +.  .+.+.|..+++|....   +.+...+    -.+|...|++++|+|.|++||+|+
T Consensus         9 ~~~gh~~r~W~~----awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl----d~~hkrsVRsvAwsp~g~~La~aS   80 (312)
T KOG0645|consen    9 KLSGHKDRVWSV----AWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL----DDGHKRSVRSVAWSPHGRYLASAS   80 (312)
T ss_pred             eecCCCCcEEEE----EeccCCceEEEeecCCceEEEEecCCCCcEEEEEec----cccchheeeeeeecCCCcEEEEee
Confidence            344555433332    35666 33  3567899999999764   4333322    248999999999999999999999


Q ss_pred             CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCC---ceEEEeeccCccEE
Q 001366          799 VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTG---QTVSHYIEHEKRAW  875 (1092)
Q Consensus       799 ~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg---~~i~~l~~h~~~V~  875 (1092)
                      .|.++.||.-..     .+.......-+|...|.|++|+++ +++||+||.|+.|-||.+..+   .++..++.|+..|.
T Consensus        81 FD~t~~Iw~k~~-----~efecv~~lEGHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK  154 (312)
T KOG0645|consen   81 FDATVVIWKKED-----GEFECVATLEGHENEVKCVAWSAS-GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK  154 (312)
T ss_pred             ccceEEEeecCC-----CceeEEeeeeccccceeEEEEcCC-CCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence            999999997543     123445566799999999999998 999999999999999998754   47888999999999


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEecCCC---ceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceE
Q 001366          876 SVDFSQVHPTKLASGSDDCSVKLWNINEK---NSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC  951 (1092)
Q Consensus       876 sv~fsp~~~~~laSgs~Dg~I~iWDl~~~---~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~  951 (1092)
                      .|.|+| ...+|+|+|+|.+|++|+-..+   .+++++. +...|.+++|++.|. .|++++.|++|+||-....     
T Consensus       155 ~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~-----  227 (312)
T KOG0645|consen  155 HVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTD-----  227 (312)
T ss_pred             EEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccC-----
Confidence            999999 7789999999999999987732   4677887 456899999999995 8999999999999987632     


Q ss_pred             EecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecC-CCEEEEEecCCcE
Q 001366          952 VLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTA-DGYIACGSESNEV 1030 (1092)
Q Consensus       952 ~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~I 1030 (1092)
                      .-.-|+..++.+.|. ++.|+|++.|+.|+||.-.... ..+........-..|...||+|.|.|. ...|++||.||.|
T Consensus       228 ~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~-d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v  305 (312)
T KOG0645|consen  228 LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSP-DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIV  305 (312)
T ss_pred             cchhcccceEeeeec-ccceEeccCCCEEEEEEecCCC-CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceE
Confidence            123478899999998 7899999999999999876321 111111222244569999999999995 6789999999999


Q ss_pred             EEEeC
Q 001366         1031 YAYHR 1035 (1092)
Q Consensus      1031 ~Iwd~ 1035 (1092)
                      ++|.+
T Consensus       306 ~~W~l  310 (312)
T KOG0645|consen  306 NFWEL  310 (312)
T ss_pred             EEEEe
Confidence            99975

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.96  E-value=6.7e-30  Score=292.92  Aligned_cols=246  Identities=13%  Similarity=0.079  Sum_probs=178.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++...    ..+..++.|+......  .........+..++...+||+++.+......+...+         
T Consensus        11 ~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~---------   77 (330)
T cd05601          11 RGHFGEVQVVREK----ATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLY---------   77 (330)
T ss_pred             eccCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEE---------
Confidence            3478999998753    2345555555432211  112223344556677789999998765544333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||++|++|.++++.....+++..++.++.||+.||+|||++||+||||||+|||++..+.+||+|||+++
T Consensus        78 -------lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~  150 (330)
T cd05601          78 -------LVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAA  150 (330)
T ss_pred             -------EEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCe
Confidence                   3899999999999998775578888999999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+.....                                                                         
T Consensus       151 ~~~~~~~-------------------------------------------------------------------------  157 (330)
T cd05601         151 RLTANKM-------------------------------------------------------------------------  157 (330)
T ss_pred             ECCCCCc-------------------------------------------------------------------------
Confidence            6431000                                                                         


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc------CCCCCccccchhhhHHHHHHcCC---
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS------GGVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~------~~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                   .......||+.|+|||++.      +..++.++|||||||+||||+++   
T Consensus       158 -----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~P  208 (330)
T cd05601         158 -----------------------------VNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSP  208 (330)
T ss_pred             -----------------------------eeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCC
Confidence                                         0001346899999999987      45678999999999999999986   


Q ss_pred             CCcHHHHHHHHHhcccc--CCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 FDSERALAAAMSDLRDR--ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |............+...  ...|.....++.+.+|+.+||+ +|.+||++.+++.||||...
T Consensus       209 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~~  269 (330)
T cd05601         209 FHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCCHPFFSKI  269 (330)
T ss_pred             CCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCCC
Confidence            43333322222222211  1123334567889999999998 99999999999999999763

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.96  E-value=6.1e-30  Score=292.76  Aligned_cols=243  Identities=14%  Similarity=0.095  Sum_probs=175.3

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhh-hhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAG-AMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .+|.|.||++...    ..+..++.|+.......  ........+ ..++....|||++.+......+...+        
T Consensus         5 ~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~--------   72 (325)
T cd05604           5 KGSFGKVLLAKRK----LDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLY--------   72 (325)
T ss_pred             eCCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEE--------
Confidence            4678999998752    22455566655322111  111111222 23466789999998765544333333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              ++|||+.|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++
T Consensus        73 --------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~  143 (325)
T cd05604          73 --------FVLDFVNGGELFFHLQRER-SFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLC  143 (325)
T ss_pred             --------EEEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCc
Confidence                    3899999999999997654 5677799999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       144 ~~~~~~--------------------------------------------------------------------------  149 (325)
T cd05604         144 KEGIAQ--------------------------------------------------------------------------  149 (325)
T ss_pred             ccCCCC--------------------------------------------------------------------------
Confidence            642200                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                   .......+||+.|+|||++.+..++.++|||||||+||||++|   |....
T Consensus       150 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~  200 (325)
T cd05604         150 -----------------------------SDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRD  200 (325)
T ss_pred             -----------------------------CCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCC
Confidence                                         0001145789999999999999999999999999999999986   43333


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH----HHHhhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT----REILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa----~eiL~~~~~~~~  588 (1092)
                      ........+....  ...+..++.+.+++.+||+++|.+||++    .+++.||||...
T Consensus       201 ~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~  257 (325)
T cd05604         201 VAEMYDNILHKPL--VLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESL  257 (325)
T ss_pred             HHHHHHHHHcCCc--cCCCCCCHHHHHHHHHHhccCHHhcCCCCCCHHHHhcCCCcCCC
Confidence            2222222222211  1122457888999999999999999987    489999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.96  E-value=8.8e-30  Score=292.22  Aligned_cols=248  Identities=17%  Similarity=0.165  Sum_probs=173.1

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC---chhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM---PSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      .+|.|+||++...... ..+..++.|++.....   .........+..++... .||+++.+......+...+       
T Consensus        10 ~G~~g~Vy~~~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~-------   81 (332)
T cd05614          10 TGAYGKVFLVRKVTGH-DTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLH-------   81 (332)
T ss_pred             ecCCEEEEEEEEcccC-CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEE-------
Confidence            3578999987652211 1245555555422111   11122233445556665 5888887655433222222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               .+|||+.|++|.+++...+ .+++.+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus        82 ---------lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~  151 (332)
T cd05614          82 ---------LILDYVSGGEMFTHLYQRD-NFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGL  151 (332)
T ss_pred             ---------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcC
Confidence                     3899999999999997654 467779999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++......                                                                        
T Consensus       152 ~~~~~~~~------------------------------------------------------------------------  159 (332)
T cd05614         152 SKEFLSEE------------------------------------------------------------------------  159 (332)
T ss_pred             CccccccC------------------------------------------------------------------------
Confidence            86533100                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC---CCc
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                    .......+||+.|+|||++.+. .++.++|||||||+||||+++   |..
T Consensus       160 ------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~  209 (332)
T cd05614         160 ------------------------------KERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTL  209 (332)
T ss_pred             ------------------------------CCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCC
Confidence                                          0000135789999999999874 478999999999999999986   321


Q ss_pred             H---HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          532 E---RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       532 ~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      .   .........+.. ..++.....++.+.+|+.+||+.||++||     ++.++++||||...
T Consensus       210 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~  273 (332)
T cd05614         210 EGERNTQSEVSRRILK-CDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGL  273 (332)
T ss_pred             CCCCCCHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence            1   111111111111 11222334578899999999999999999     78899999999763

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=2.4e-29  Score=290.01  Aligned_cols=255  Identities=15%  Similarity=0.231  Sum_probs=175.4

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  ++.|+||++....    .+..++.|+...... ........++...+...+|||++.+++.........  
T Consensus        17 y~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~--   90 (343)
T cd07878          17 YQNLTPVGSGAYGSVCSAYDTR----LRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIE--   90 (343)
T ss_pred             hhhheecccCCCeEEEEEEECC----CCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccc--
Confidence            4444444  4789999997532    244555554422111 112233446677888889999998765433211111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                         .     +.....+|+++ |++|.++++..  .++..+++.++.||+.||+|||++||+||||||+||+++.++.+|+
T Consensus        91 ---~-----~~~~~~~~~~~-~~~l~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl  159 (343)
T cd07878          91 ---N-----FNEVYLVTNLM-GADLNNIVKCQ--KLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRI  159 (343)
T ss_pred             ---c-----cCcEEEEeecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEE
Confidence               0     01111245554 88999988643  5778899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++....                                                                     
T Consensus       160 ~Dfg~~~~~~~---------------------------------------------------------------------  170 (343)
T cd07878         160 LDFGLARQADD---------------------------------------------------------------------  170 (343)
T ss_pred             cCCccceecCC---------------------------------------------------------------------
Confidence            99998865320                                                                     


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ..+..+||++|+|||++.+ ..++.++|||||||+||||+++ 
T Consensus       171 -------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~  213 (343)
T cd07878         171 -------------------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGK  213 (343)
T ss_pred             -------------------------------------CcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCC
Confidence                                                 0013468999999999987 5689999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhcc--cc----------------------CCC-----CCCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          529 --FDSERALAAAMSDLR--DR----------------------ILP-----PSFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~--~~----------------------~~p-----~~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                        |..............  ..                      ..+     ..+...++.+.+|+.+||++||.+|||+.
T Consensus       214 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~  293 (343)
T cd07878         214 ALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISAS  293 (343)
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHH
Confidence              443221111111000  00                      001     11234567788999999999999999999


Q ss_pred             HHhhhhhhhhhhcc
Q 001366          578 EILQSEVTNEFQEV  591 (1092)
Q Consensus       578 eiL~~~~~~~~~~~  591 (1092)
                      |+|+||||......
T Consensus       294 ell~hp~~~~~~~~  307 (343)
T cd07878         294 EALAHPYFSQYHDP  307 (343)
T ss_pred             HHhcCcchhccCCC
Confidence            99999999875443

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-27  Score=276.92  Aligned_cols=272  Identities=16%  Similarity=0.298  Sum_probs=227.1

Q ss_pred             cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeec
Q 001366          747 RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       747 ~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~  826 (1092)
                      .|++-..|.+.+|+|....+.     ..|..|.++|+.|+|+|++.+|++||+|.+|+||++..       ..+.....+
T Consensus        24 ILtslHsG~IQlWDYRM~tli-----~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-------rrclftL~G   91 (1202)
T KOG0292|consen   24 ILTSLHSGVIQLWDYRMGTLI-----DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-------RRCLFTLLG   91 (1202)
T ss_pred             EEEeecCceeeeehhhhhhHH-----hhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-------ceehhhhcc
Confidence            467778899999998764322     25779999999999999999999999999999999875       344556788


Q ss_pred             CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc-
Q 001366          827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN-  905 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~-  905 (1092)
                      |-..|..+.|++. --+|+|+|.|.||+||+..+++++..++||..-|.|..|+| ...+++|+|-|.+|+|||+..-+ 
T Consensus        92 HlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRk  169 (1202)
T KOG0292|consen   92 HLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRK  169 (1202)
T ss_pred             ccceeEEeeccCC-CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhc
Confidence            9999999999987 78999999999999999999999999999999999999999 77899999999999999996210 


Q ss_pred             --------------------------ee--eeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc-ceEEecC
Q 001366          906 --------------------------SL--ATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA-PWCVLAG  955 (1092)
Q Consensus       906 --------------------------~l--~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~-~~~~l~~  955 (1092)
                                                .+  +.+. |...|+.++|+|.-+ ++++|+.|..|++|.....+. .+.+..|
T Consensus       170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrg  248 (1202)
T KOG0292|consen  170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRG  248 (1202)
T ss_pred             cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhc
Confidence                                      00  1112 566899999999886 999999999999999886543 3567889


Q ss_pred             CCCCeEEEEEcC-CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          956 HEKAVSYVKFLD-SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       956 H~~~V~~v~fs~-~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      |.+.|+++-|++ .+.++|.|.|++|+|||+.        ....+.++.......+.++.+|...++|+|-+ +-+.||-
T Consensus       249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~--------kRt~v~tfrrendRFW~laahP~lNLfAAgHD-sGm~VFk  319 (1202)
T KOG0292|consen  249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT--------KRTSVQTFRRENDRFWILAAHPELNLFAAGHD-SGMIVFK  319 (1202)
T ss_pred             ccCCcceEEecCccceeEecCCCccEEEEecc--------cccceeeeeccCCeEEEEEecCCcceeeeecC-CceEEEE
Confidence            999999999994 5678899999999999998        35667888766778899999999988877754 4466776


Q ss_pred             CCCCCcee
Q 001366         1035 RSLPMPIT 1042 (1092)
Q Consensus      1035 ~~~~~~i~ 1042 (1092)
                      +..-.|..
T Consensus       320 leRErpa~  327 (1202)
T KOG0292|consen  320 LERERPAY  327 (1202)
T ss_pred             EcccCceE
Confidence            65443433

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=8.1e-30  Score=297.89  Aligned_cols=291  Identities=13%  Similarity=0.082  Sum_probs=181.0

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...    ..+..++.|+..-...  ........++..++....|||++.++.....+...+         
T Consensus        11 ~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~---------   77 (377)
T cd05629          11 KGAFGEVRLVQKK----DTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLY---------   77 (377)
T ss_pred             ecCCEEEEEEEEC----CCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeE---------
Confidence            3578999998752    2345566655422111  111222334566778889999998877655433333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++||||+|++|.+++...+ .+++..++.++.||+.||+|||++||+||||||+|||++.++.+|++|||+++
T Consensus        78 -------lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~  149 (377)
T cd05629          78 -------LIMEFLPGGDLMTMLIKYD-TFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLST  149 (377)
T ss_pred             -------EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccc
Confidence                   3899999999999997654 46777899999999999999999999999999999999999999999999997


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+.......        ..++.......       .      +           +..+......+...+     ..... 
T Consensus       150 ~~~~~~~~~--------~~~~~~~~~~~-------~------~-----------~~~~~~~~~~~~~~~-----~~~~~-  191 (377)
T cd05629         150 GFHKQHDSA--------YYQKLLQGKSN-------K------N-----------RIDNRNSVAVDSINL-----TMSSK-  191 (377)
T ss_pred             ccccccccc--------ccccccccccc-------c------c-----------ccccccccccccccc-----cccch-
Confidence            543211000        00000000000       0      0           000000000000000     00000 


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                      ..                  ...............+||+.|+|||++.+..++.++|||||||+||||++|   |.....
T Consensus       192 ~~------------------~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~  253 (377)
T cd05629         192 DQ------------------IATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENS  253 (377)
T ss_pred             hh------------------hhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCCH
Confidence            00                  000000000001146799999999999998999999999999999999986   433333


Q ss_pred             HHHHHHhcc--ccCCCCCCCCCChhHHHHHHhccccCCCCC---CCHHHHhhhhhhhhh
Q 001366          535 LAAAMSDLR--DRILPPSFLSENPKEAGFCLWQLHPEPLSR---PTTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~--~~~~p~~~~~~~~~~~~li~~lL~~dP~~R---psa~eiL~~~~~~~~  588 (1092)
                      .........  .....|.....++.+.+|+.+||. +|.+|   +++.+++.||||...
T Consensus       254 ~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~~  311 (377)
T cd05629         254 HETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRGV  311 (377)
T ss_pred             HHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCCC
Confidence            222222222  222223333457889999999997 77765   599999999999763

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.96  E-value=1.1e-29  Score=289.81  Aligned_cols=242  Identities=17%  Similarity=0.155  Sum_probs=175.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .+|.|+||++....    .+..++.|+......  .........+..++... .|||++.++.........+        
T Consensus         5 ~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~--------   72 (318)
T cd05570           5 KGSFGKVLLAELKG----TDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLF--------   72 (318)
T ss_pred             eCCCeEEEEEEECC----CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEE--------
Confidence            46789999997632    244555555432111  11122223333444433 7999998776544333333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              ++|||+.|++|.+++...+ .+++.++..++.||+.||.|||++||+||||||+||+++.++.+|++|||++
T Consensus        73 --------lv~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~  143 (318)
T cd05570          73 --------FVMEYVNGGDLMFHIQRSG-RFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMC  143 (318)
T ss_pred             --------EEEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCC
Confidence                    3899999999999997664 4777799999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       144 ~~~~~~--------------------------------------------------------------------------  149 (318)
T cd05570         144 KEGILG--------------------------------------------------------------------------  149 (318)
T ss_pred             eecCcC--------------------------------------------------------------------------
Confidence            642200                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                   .......+||+.|+|||.+.+..++.++|||||||++|||++|   |....
T Consensus       150 -----------------------------~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~  200 (318)
T cd05570         150 -----------------------------GVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDD  200 (318)
T ss_pred             -----------------------------CCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCC
Confidence                                         0000134689999999999999999999999999999999986   44333


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH-----HHHhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT-----REILQSEVTNE  587 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa-----~eiL~~~~~~~  587 (1092)
                      ...............|  ...++.+.+|+.+||++||.+||++     .++++||||..
T Consensus       201 ~~~~~~~i~~~~~~~~--~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~  257 (318)
T cd05570         201 EDELFQSILEDEVRYP--RWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFRE  257 (318)
T ss_pred             HHHHHHHHHcCCCCCC--CcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcCCCcCC
Confidence            3222222222222222  2347888999999999999999999     99999999966

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.96  E-value=5.4e-30  Score=299.21  Aligned_cols=286  Identities=14%  Similarity=0.100  Sum_probs=181.7

Q ss_pred             cccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      +|.|.||++....    .+..++.|+......  ........++..++....||+++.++.....+...+          
T Consensus        12 G~~g~V~~a~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~----------   77 (376)
T cd05598          12 GAFGEVCLVRKVD----TNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLY----------   77 (376)
T ss_pred             CCCeEEEEEEECC----CCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEE----------
Confidence            4789999987632    245556655422111  111222335566788889999998776654433333          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            ++||||+||+|.++|...+ .++...++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++..
T Consensus        78 ------lv~E~~~~g~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~  150 (376)
T cd05598          78 ------FVMDYIPGGDMMSLLIRLG-IFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG  150 (376)
T ss_pred             ------EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCcc
Confidence                  3899999999999997765 466768899999999999999999999999999999999999999999999865


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +............+.     ..                                          .+.+. ..........
T Consensus       151 ~~~~~~~~~~~~~~~-----~~------------------------------------------~~~~~-~~~~~~~~~~  182 (376)
T cd05598         151 FRWTHDSKYYQKGDH-----HR------------------------------------------QDSME-PSEEWSEIDR  182 (376)
T ss_pred             ccccccccccccccc-----cc------------------------------------------ccccc-cccccccccc
Confidence            431100000000000     00                                          00000 0000000000


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                      +.           ....... ...+.........+||+.|||||++.+..++.++|||||||+||||++|   |......
T Consensus       183 ~~-----------~~~~~~~-~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~  250 (376)
T cd05598         183 CR-----------LKPLERR-RKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPA  250 (376)
T ss_pred             cc-----------ccchhhh-hhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHH
Confidence            00           0000000 0000001112256899999999999999999999999999999999986   5443333


Q ss_pred             HHHHHhcc--ccCCCCCCCCCChhHHHHHHhccccCCCCCC---CHHHHhhhhhhhhh
Q 001366          536 AAAMSDLR--DRILPPSFLSENPKEAGFCLWQLHPEPLSRP---TTREILQSEVTNEF  588 (1092)
Q Consensus       536 ~~~~~~~~--~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp---sa~eiL~~~~~~~~  588 (1092)
                      ........  .....+.....++.+.+|+.+|+ .+|.+|+   ++.++++||||...
T Consensus       251 ~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~~  307 (376)
T cd05598         251 ETQLKVINWETTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAHPFFKGI  307 (376)
T ss_pred             HHHHHHhccCccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCCC
Confidence            22222222  11122333456788999999977 5999999   99999999999763

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.96  E-value=1.2e-29  Score=290.42  Aligned_cols=243  Identities=15%  Similarity=0.131  Sum_probs=174.2

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCc--hh-hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SD-AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ..+|.|+||++....    .+..++.|+.......  .. .........++....||||+.+......+...+       
T Consensus         4 g~G~fg~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~-------   72 (325)
T cd05602           4 GKGSFGKVLLARHKA----EEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLY-------   72 (325)
T ss_pred             eeCCCeEEEEEEECC----CCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEE-------
Confidence            346889999997632    2444555554321111  11 111112223456779999998765544333222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               .+|||+.|++|.+++...+ .+....++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus        73 ---------lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~  142 (325)
T cd05602          73 ---------FVLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGL  142 (325)
T ss_pred             ---------EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCC
Confidence                     3899999999999997654 455668889999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++......                                                                        
T Consensus       143 a~~~~~~~------------------------------------------------------------------------  150 (325)
T cd05602         143 CKENIEHN------------------------------------------------------------------------  150 (325)
T ss_pred             CcccccCC------------------------------------------------------------------------
Confidence            86532100                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                     ......+||+.|+|||++.+..++.++|||||||+||||+++   |...
T Consensus       151 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  199 (325)
T cd05602         151 -------------------------------GTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  199 (325)
T ss_pred             -------------------------------CCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCC
Confidence                                           001145789999999999999999999999999999999986   4333


Q ss_pred             HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHH----HHhhhhhhhh
Q 001366          533 RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTR----EILQSEVTNE  587 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~----eiL~~~~~~~  587 (1092)
                      .... .+..+..... ......++.+.+++.+||+++|.+||++.    ++++|+||..
T Consensus       200 ~~~~-~~~~i~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~~~~~~~  256 (325)
T cd05602         200 NTAE-MYDNILNKPL-QLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSP  256 (325)
T ss_pred             CHHH-HHHHHHhCCc-CCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHHHHhcCcccCC
Confidence            3222 2222222211 12234578899999999999999999876    8999999865

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.96  E-value=1.3e-29  Score=289.41  Aligned_cols=242  Identities=16%  Similarity=0.136  Sum_probs=173.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhh-hhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAG-AMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .+|.|.||++...+    .+..++.|+......  ........++ ..++...+|||++.+..........+        
T Consensus         5 ~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~--------   72 (321)
T cd05603           5 KGSFGKVLLAKRKS----DGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLY--------   72 (321)
T ss_pred             eCCCEEEEEEEECC----CCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEE--------
Confidence            46789999998632    244555555422111  1111222222 23567789999998765544332222        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              ++||||+|++|.+++.... .+.+.++..++.||+.||+|||++||+||||||+||+|+.++.+||+|||++
T Consensus        73 --------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~  143 (321)
T cd05603          73 --------FVLDYVNGGELFFHLQRER-CFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLC  143 (321)
T ss_pred             --------EEEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCC
Confidence                    3899999999999997654 4666689999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +......                                                                         
T Consensus       144 ~~~~~~~-------------------------------------------------------------------------  150 (321)
T cd05603         144 KEGVEPE-------------------------------------------------------------------------  150 (321)
T ss_pred             ccCCCCC-------------------------------------------------------------------------
Confidence            6422000                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    ......+||+.|+|||.+.+..++.++|||||||+||||+++   |....
T Consensus       151 ------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  200 (321)
T cd05603         151 ------------------------------ETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD  200 (321)
T ss_pred             ------------------------------CccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCC
Confidence                                          001145789999999999998999999999999999999986   43332


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH----HHHhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT----REILQSEVTNE  587 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa----~eiL~~~~~~~  587 (1092)
                      .. ..+..+..... +.....+..+.+++.+||+++|.+||++    .++++|+||..
T Consensus       201 ~~-~~~~~i~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~~~~~~  256 (321)
T cd05603         201 VS-QMYDNILHKPL-QLPGGKTVAACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSP  256 (321)
T ss_pred             HH-HHHHHHhcCCC-CCCCCCCHHHHHHHHHHccCCHhhcCCCCCCHHHHhCCCCcCC
Confidence            22 22222222211 1223457788999999999999999976    49999999965

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.6e-29  Score=293.19  Aligned_cols=234  Identities=18%  Similarity=0.179  Sum_probs=169.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|.||++....    .+..++.|+...       .....+..++...+|||++.++.........+           
T Consensus        76 ~G~~g~Vy~~~~~~----~~~~valK~~~~-------~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-----------  133 (357)
T PHA03209         76 PGSEGRVFVATKPG----QPDPVVLKIGQK-------GTTLIEAMLLQNVNHPSVIRMKDTLVSGAITC-----------  133 (357)
T ss_pred             CCCCeEEEEEEECC----CCceEEEEeCCc-------cccHHHHHHHHhCCCCCCcChhheEEeCCeeE-----------
Confidence            34789999998743    233444443211       12234666788889999998776655433222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|+|+. ++|.+++......++..+++.|+.||+.||.|||++||+||||||+|||++..+.+|++|||+++..
T Consensus       134 -----lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~  207 (357)
T PHA03209        134 -----MVLPHYS-SDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFP  207 (357)
T ss_pred             -----EEEEccC-CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCcccccc
Confidence                 2678875 5899999777677888899999999999999999999999999999999999999999999988642


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ...                                                                             
T Consensus       208 ~~~-----------------------------------------------------------------------------  210 (357)
T PHA03209        208 VVA-----------------------------------------------------------------------------  210 (357)
T ss_pred             ccC-----------------------------------------------------------------------------
Confidence            200                                                                             


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC----CCcH---
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR----FDSE---  532 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~----f~~~---  532 (1092)
                                                 .......||..|+|||++.+..++.++|||||||+||||+++    |...   
T Consensus       211 ---------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~  263 (357)
T PHA03209        211 ---------------------------PAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPST  263 (357)
T ss_pred             ---------------------------cccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCc
Confidence                                       000134688999999999999999999999999999999963    2210   


Q ss_pred             ---------HHHHHHHHhccccCCCCCC-------------------------------CCCChhHHHHHHhccccCCCC
Q 001366          533 ---------RALAAAMSDLRDRILPPSF-------------------------------LSENPKEAGFCLWQLHPEPLS  572 (1092)
Q Consensus       533 ---------~~~~~~~~~~~~~~~p~~~-------------------------------~~~~~~~~~li~~lL~~dP~~  572 (1092)
                               ......+..+.  ..|+.+                               ...+....+||.+||.+||.+
T Consensus       264 ~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~  341 (357)
T PHA03209        264 PEEYVKSCHSHLLKIISTLK--VHPEEFPRDPGSRLVRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAM  341 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--cChhhcCCCCccHHHHHHHhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCCccc
Confidence                     01111111110  111111                               123455678999999999999


Q ss_pred             CCCHHHHhhhhhhhh
Q 001366          573 RPTTREILQSEVTNE  587 (1092)
Q Consensus       573 Rpsa~eiL~~~~~~~  587 (1092)
                      |||+.|+|+||||..
T Consensus       342 Rpta~e~l~hp~f~~  356 (357)
T PHA03209        342 RPSAEEILNYPMFAQ  356 (357)
T ss_pred             CcCHHHHhcCchhcc
Confidence            999999999999964

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.96  E-value=1.8e-29  Score=294.17  Aligned_cols=253  Identities=16%  Similarity=0.115  Sum_probs=180.9

Q ss_pred             chhHHHhhhc--cccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          211 FSEFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       211 f~~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      ..+|.+.+.+  ++.|.||++....    .+..++.|+......  .........+..++...+|||++.+......+..
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~  117 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKS----SKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKY  117 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEECC----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence            3455555544  4789999887632    244555555421111  1112223345667888899999987655443332


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                ++||||+||+|.+++...  .++...+..++.||+.||+|||++||+||||||+|||++.++
T Consensus       118 ~~----------------lv~Ey~~gg~L~~~l~~~--~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~  179 (370)
T cd05596         118 LY----------------MVMEYMPGGDLVNLMSNY--DIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG  179 (370)
T ss_pred             EE----------------EEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCC
Confidence            22                389999999999999754  467778999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++......                                                               
T Consensus       180 ~~kL~DfG~~~~~~~~~---------------------------------------------------------------  196 (370)
T cd05596         180 HLKLADFGTCMKMDANG---------------------------------------------------------------  196 (370)
T ss_pred             CEEEEeccceeeccCCC---------------------------------------------------------------
Confidence            99999999886543100                                                               


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC----CCCccccchhhhHHH
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG----VCTTSSNIYSLGVLF  522 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~----~~t~~sDIwSLGvll  522 (1092)
                                                             .......+||+.|+|||.+.+.    .++.++|||||||+|
T Consensus       197 ---------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvil  237 (370)
T cd05596         197 ---------------------------------------MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFL  237 (370)
T ss_pred             ---------------------------------------cccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHH
Confidence                                                   0000135789999999998753    478999999999999


Q ss_pred             HHHcCC---CCcHHHHHHHHHhccc--cCCCCCCCCCChhHHHHHHhccccCCCC--CCCHHHHhhhhhhhh
Q 001366          523 FELFGR---FDSERALAAAMSDLRD--RILPPSFLSENPKEAGFCLWQLHPEPLS--RPTTREILQSEVTNE  587 (1092)
Q Consensus       523 ~ell~~---f~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~li~~lL~~dP~~--Rpsa~eiL~~~~~~~  587 (1092)
                      |||++|   |...............  ....|.....++.+.+||.+||..+|.+  |+++.++++||||..
T Consensus       238 yelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h~~~~~  309 (370)
T cd05596         238 YEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKN  309 (370)
T ss_pred             HHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcCcccCC
Confidence            999986   4443332222222222  1222334456888999999999999987  999999999999975

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=3.2e-28  Score=258.52  Aligned_cols=242  Identities=20%  Similarity=0.341  Sum_probs=216.6

Q ss_pred             eeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEec
Q 001366          822 AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI  901 (1092)
Q Consensus       822 ~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl  901 (1092)
                      .+..+|.+.|.||++.|. ..+|+||+.|++|+|||+.+|+...++.||-..|..|++++ -..++++++.|+.|+.||+
T Consensus       145 rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEec
Confidence            456789999999999998 89999999999999999999999999999999999999999 5568999999999999999


Q ss_pred             CCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCe
Q 001366          902 NEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNK  979 (1092)
Q Consensus       902 ~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~  979 (1092)
                      +..+.++.+. |-+.|.|++.+|.-. .|++|+.|.+++|||+|+.. .+.++.||..+|..|.+. -+..++|||.|++
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t  300 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQVITGSHDST  300 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence            9999988877 568999999999885 89999999999999999864 578999999999999997 4568999999999


Q ss_pred             EEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccC
Q 001366          980 LKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDD 1059 (1092)
Q Consensus       980 I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~ 1059 (1092)
                      |++||++        .+....++..|...|.+++++|....+|++|.|+ |+-|++..+..+..              ..
T Consensus       301 vrlWDl~--------agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n--------------ls  357 (460)
T KOG0285|consen  301 VRLWDLR--------AGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN--------------LS  357 (460)
T ss_pred             EEEeeec--------cCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc--------------cc
Confidence            9999999        5667888999999999999999999999999886 99998877765543              35


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1060 DNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1060 ~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +|+.-|++++...|+ ++++|+.+|.+.+||.
T Consensus       358 gh~~iintl~~nsD~-v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  358 GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDW  388 (460)
T ss_pred             cccceeeeeeeccCc-eEEEcCCceEEEEEec
Confidence            778889999988775 5779999999999984

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=5.8e-30  Score=293.51  Aligned_cols=244  Identities=17%  Similarity=0.174  Sum_probs=172.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccC---CCCCCCccccceecCCCCCCCccCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASN---ASPKPVGVGTAVVSNGSLDLGARTG  294 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1092)
                      .+|.|+||++...    ..+..++.|+........  .......+..++...   .||+++.+......+...+      
T Consensus         3 ~G~~g~Vy~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~------   72 (330)
T cd05586           3 KGTFGQVYQVRKK----DTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLY------   72 (330)
T ss_pred             CCCceEEEEEEEC----CCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEE------
Confidence            4688999998763    234556666543221111  111122222333222   6999988765544333333      


Q ss_pred             CCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          295 VPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       295 ~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                                .+|||+.|++|.+++...+ .++...++.++.||+.||+|||++||+||||||+|||++.++.+||+|||
T Consensus        73 ----------lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg  141 (330)
T cd05586          73 ----------LVTDYMSGGELFWHLQKEG-RFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFG  141 (330)
T ss_pred             ----------EEEcCCCCChHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCC
Confidence                      3899999999999997654 46777999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++......                                                                       
T Consensus       142 ~a~~~~~~~-----------------------------------------------------------------------  150 (330)
T cd05586         142 LSKANLTDN-----------------------------------------------------------------------  150 (330)
T ss_pred             cCcCCCCCC-----------------------------------------------------------------------
Confidence            876522000                                                                       


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC---CC
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                      ......+||+.|+|||++.+. .++.++|||||||+||||+++   |.
T Consensus       151 --------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~  198 (330)
T cd05586         151 --------------------------------KTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFY  198 (330)
T ss_pred             --------------------------------CCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCC
Confidence                                            001145689999999999764 489999999999999999986   43


Q ss_pred             cHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC----CHHHHhhhhhhhhh
Q 001366          531 SERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP----TTREILQSEVTNEF  588 (1092)
Q Consensus       531 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp----sa~eiL~~~~~~~~  588 (1092)
                      ..... ..+..+............++.+.+|+.+||+++|.+||    ++.++++||||...
T Consensus       199 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~  259 (330)
T cd05586         199 AEDTQ-QMYRNIAFGKVRFPKNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADI  259 (330)
T ss_pred             CCCHH-HHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcCccccCC
Confidence            33222 22222222211111123478889999999999999998    68999999999753

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=2.1e-29  Score=282.51  Aligned_cols=245  Identities=17%  Similarity=0.166  Sum_probs=166.6

Q ss_pred             cccceeeeCCCCCcccccccccccccccccc-Cc---hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MP---SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      +|.|+||++...+    .+..++.|+..... ..   ..........+.+....|||++.+++.........    ....
T Consensus        11 g~~g~v~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~----~~~~   82 (288)
T cd07863          11 GAYGTVYKARDPH----SGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDR----ETKV   82 (288)
T ss_pred             cCCeEEEEEEECC----CCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCC----CceE
Confidence            4789999998732    24445554332111 11   11112223333344557999998766533211100    0111


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                             ..+|||+.+ +|.+++.... ..++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+
T Consensus        83 -------~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~  154 (288)
T cd07863          83 -------TLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGL  154 (288)
T ss_pred             -------EEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCc
Confidence                   137888885 8999996543 3478889999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++.....                                                                         
T Consensus       155 ~~~~~~~-------------------------------------------------------------------------  161 (288)
T cd07863         155 ARIYSCQ-------------------------------------------------------------------------  161 (288)
T ss_pred             cccccCc-------------------------------------------------------------------------
Confidence            8653310                                                                         


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                     ...+...||..|+|||++.+..++.++|||||||++|||+++   |...
T Consensus       162 -------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~  210 (288)
T cd07863         162 -------------------------------MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN  210 (288)
T ss_pred             -------------------------------ccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCC
Confidence                                           000134678899999999998999999999999999999986   3222


Q ss_pred             HHHHH---HHHhcc---c-----------cCCC--------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          533 RALAA---AMSDLR---D-----------RILP--------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       533 ~~~~~---~~~~~~---~-----------~~~p--------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .....   ......   .           ..+.        ...+..+.++.+|+.+||++||.+|||+.|++.||||
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         211 SEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             CHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            22111   111100   0           0000        0112345677899999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-27  Score=246.02  Aligned_cols=294  Identities=15%  Similarity=0.185  Sum_probs=236.2

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      +.+|..+++-|.|+.+|++|.+++.|.++.||-...       ........+|.+.|.|+..+-+ ...++||+.|.+++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-------GerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~k   77 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-------GERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAK   77 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecC-------CceeeeecCCCceEEEEEecCC-cceeeeccccceeE
Confidence            568999999999999999999999999999997532       2344566789999999998876 78999999999999


Q ss_pred             EEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeC-----CCcEEEEecC-------CCceeeeEe-cCCceEEEEE
Q 001366          855 LWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD-----DCSVKLWNIN-------EKNSLATIK-NIANVCCVQF  921 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~-----Dg~I~iWDl~-------~~~~l~~l~-~~~~V~sl~f  921 (1092)
                      |||+.+|+++..++ ...+|..+.|++ ++++++.+.+     .+.|.++|++       ...++..+. +.+.++.+-|
T Consensus        78 LWDv~tGk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W  155 (327)
T KOG0643|consen   78 LWDVETGKQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW  155 (327)
T ss_pred             EEEcCCCcEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence            99999999999987 567899999999 7777766654     4679999998       345555555 5678999999


Q ss_pred             ccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeE
Q 001366          922 SAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSL 1000 (1092)
Q Consensus       922 sp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~ 1000 (1092)
                      .|-+. .|++|..||.|..||++++...+.....|...|+.+.++ +..+++|+|.|.+-++||+++        -.+++
T Consensus       156 g~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t--------l~v~K  226 (327)
T KOG0643|consen  156 GPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT--------LEVLK  226 (327)
T ss_pred             cccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc--------eeeEE
Confidence            99985 899999999999999999988777888899999999999 677899999999999999993        45667


Q ss_pred             EEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCC--ccccCCCCCCEEEEEEeCCCCEEE
Q 001366         1001 TFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISG--KETDDDNGLFVSSVCWRRRSDMVV 1078 (1092)
Q Consensus      1001 ~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~--~~~~~~h~~~V~sva~spd~~~La 1078 (1092)
                      ++.. ..+||+.+++|....+++|+.....-|=-.....-....+|  .+.+..  .....+|-++|++|+|+|+|...+
T Consensus       227 ty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF--yh~i~eEEigrvkGHFGPINsvAfhPdGksYs  303 (327)
T KOG0643|consen  227 TYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF--YHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS  303 (327)
T ss_pred             Eeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhH--HHHHHHHHhccccccccCcceeEECCCCcccc
Confidence            7764 56899999999988888887654433322111111011111  011111  123468899999999999999999


Q ss_pred             EEecCCeEEEEE
Q 001366         1079 AANSSGCIKVLQ 1090 (1092)
Q Consensus      1079 sgs~DG~V~vW~ 1090 (1092)
                      +|+.||.|+|.-
T Consensus       304 SGGEDG~VR~h~  315 (327)
T KOG0643|consen  304 SGGEDGYVRLHH  315 (327)
T ss_pred             cCCCCceEEEEE
Confidence            999999999864

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=8.7e-29  Score=258.90  Aligned_cols=287  Identities=16%  Similarity=0.241  Sum_probs=241.7

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCC-CCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFN-DSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKL  855 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~I  855 (1092)
                      +..+-+-|..|+|||+||++|+.||-|.+|++.+... +..........+-++.+|.|++|+.| ..+||+|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCCcEEE
Confidence            4455677889999999999999999999999876332 22223333455678999999999998 899999999999999


Q ss_pred             EECCCCceEEEee-ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEE
Q 001366          856 WDACTGQTVSHYI-EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       856 WD~~tg~~i~~l~-~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      |.+.+|+|++.|. .|++.|+|+.|+. ++..++++|.|.++++.-+.+|+++..+. |.+-|+...|.++|. .+++++
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~-~iisaS  367 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH-HIISAS  367 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC-eEEEec
Confidence            9999999999997 8999999999999 88899999999999999999999999998 567799999999995 899999


Q ss_pred             CCCeEEEEEcCCCCcceEEec--CCCCCeEEEEEc--CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCC---C
Q 001366          934 ADYRTYCYDLRNARAPWCVLA--GHEKAVSYVKFL--DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGH---T 1006 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~--~H~~~V~~v~fs--~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h---~ 1006 (1092)
                      .||+|++|+..+.+. +.++.  +..-+|.+|-..  +...++.+...++|.|-++.         +..++++..-   .
T Consensus       368 sDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q---------GQvVrsfsSGkREg  437 (508)
T KOG0275|consen  368 SDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ---------GQVVRSFSSGKREG  437 (508)
T ss_pred             CCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc---------ceEEeeeccCCccC
Confidence            999999999998764 34443  345577777765  56789999999999999987         5667776532   2


Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeE
Q 001366         1007 NEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCI 1086 (1092)
Q Consensus      1007 ~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V 1086 (1092)
                      +...+.++||.|.++.|.++|+.++.|...+|+.-.+.              .-|..-|-.++-+|..+.||+-+.||.+
T Consensus       438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl--------------~VhEkdvIGl~HHPHqNllAsYsEDgll  503 (508)
T KOG0275|consen  438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL--------------PVHEKDVIGLTHHPHQNLLASYSEDGLL  503 (508)
T ss_pred             CceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee--------------ecccccccccccCcccchhhhhcccchh
Confidence            34556789999999999999999999998887765544              3456678899999999999999999999


Q ss_pred             EEEE
Q 001366         1087 KVLQ 1090 (1092)
Q Consensus      1087 ~vW~ 1090 (1092)
                      ++|.
T Consensus       504 KLWk  507 (508)
T KOG0275|consen  504 KLWK  507 (508)
T ss_pred             hhcC
Confidence            9995

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.4e-29  Score=300.78  Aligned_cols=245  Identities=18%  Similarity=0.147  Sum_probs=175.5

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+...+  +++|.||++...+    .+..++.|..       ......++..++...+|||++.++.....+...+   
T Consensus       171 y~i~~~Lg~G~~G~Vy~a~~~~----~~~~vavK~~-------~~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~---  236 (461)
T PHA03211        171 FAIHRALTPGSEGCVFESSHPD----YPQRVVVKAG-------WYASSVHEARLLRRLSHPAVLALLDVRVVGGLTC---  236 (461)
T ss_pred             eEEEEEEccCCCeEEEEEEECC----CCCEEEEecc-------cccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEE---
Confidence            3444434  5789999998743    2344444422       1122345677888899999998877654433333   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   ++|+++. ++|.+++......++..+++.|+.||+.||.|||++||+||||||+||||+.++.+||+
T Consensus       237 -------------lv~e~~~-~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~  302 (461)
T PHA03211        237 -------------LVLPKYR-SDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLG  302 (461)
T ss_pred             -------------EEEEccC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEc
Confidence                         2678775 69999997766678888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.+.....                                                                   
T Consensus       303 DFGla~~~~~~~~-------------------------------------------------------------------  315 (461)
T PHA03211        303 DFGAACFARGSWS-------------------------------------------------------------------  315 (461)
T ss_pred             ccCCceecccccc-------------------------------------------------------------------
Confidence            9999876431000                                                                   


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                        ........||..|+|||++.+..++.++|||||||+||||+++   
T Consensus       316 ----------------------------------~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~  361 (461)
T PHA03211        316 ----------------------------------TPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTAS  361 (461)
T ss_pred             ----------------------------------cccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCC
Confidence                                              0000135689999999999999999999999999999999863   


Q ss_pred             -CCc---------HHHHHHHHHhccc--cCCC----------------------------CCCCCCChhHHHHHHhcccc
Q 001366          529 -FDS---------ERALAAAMSDLRD--RILP----------------------------PSFLSENPKEAGFCLWQLHP  568 (1092)
Q Consensus       529 -f~~---------~~~~~~~~~~~~~--~~~p----------------------------~~~~~~~~~~~~li~~lL~~  568 (1092)
                       |..         .......+.....  ..++                            ..+...++.+.+|+.+||.+
T Consensus       362 lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~  441 (461)
T PHA03211        362 LFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTF  441 (461)
T ss_pred             cccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHccc
Confidence             211         1111111111110  0011                            01123456788999999999


Q ss_pred             CCCCCCCHHHHhhhhhhhh
Q 001366          569 EPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       569 dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ||.+|||+.|+|+||||..
T Consensus       442 DP~~RPsa~elL~hp~f~~  460 (461)
T PHA03211        442 DGARRPSAAELLRLPLFQS  460 (461)
T ss_pred             ChhhCcCHHHHhhCcccCC
Confidence            9999999999999999964

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.96  E-value=3.3e-29  Score=287.69  Aligned_cols=248  Identities=17%  Similarity=0.175  Sum_probs=177.6

Q ss_pred             HHHhhh--ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTT--LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~--~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.  .++.|.||++....    .+..++.|+..............++.+++....|||++.++.....+...+   
T Consensus         7 y~~~~~lg~g~~g~V~~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~---   79 (333)
T cd06650           7 FEKISELGAGNGGVVFKVSHKP----SGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS---   79 (333)
T ss_pred             hheeccccCCCCEEEEEEEECC----CCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEE---
Confidence            444443  34789999987632    234445544322212222233456667788889999998776655443333   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhc-CccccCCCCCCeEEccCCcEEE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQ-GVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~-gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                   ++|||+.|++|.++|+..+ .++...+..++.||+.||.|||++ +|+||||||+|||++.++.+|+
T Consensus        80 -------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL  145 (333)
T cd06650          80 -------------ICMEHMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKL  145 (333)
T ss_pred             -------------EEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEE
Confidence                         3799999999999997754 467778899999999999999975 7999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.+....                                                                   
T Consensus       146 ~Dfg~~~~~~~~~-------------------------------------------------------------------  158 (333)
T cd06650         146 CDFGVSGQLIDSM-------------------------------------------------------------------  158 (333)
T ss_pred             eeCCcchhhhhhc-------------------------------------------------------------------
Confidence            9999876533100                                                                   


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC--
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                            .....||..|+|||.+.+..++.++|||||||++|||+++  
T Consensus       159 --------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~  200 (333)
T cd06650         159 --------------------------------------ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRY  200 (333)
T ss_pred             --------------------------------------cccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence                                                  0134578899999999998899999999999999999986  


Q ss_pred             -CCcHHH--HHHHHH-----------------------------------------hccccCCCCCC--CCCChhHHHHH
Q 001366          529 -FDSERA--LAAAMS-----------------------------------------DLRDRILPPSF--LSENPKEAGFC  562 (1092)
Q Consensus       529 -f~~~~~--~~~~~~-----------------------------------------~~~~~~~p~~~--~~~~~~~~~li  562 (1092)
                       |.....  ....+.                                         .+.. ..++.+  ...++++.+|+
T Consensus       201 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li  279 (333)
T cd06650         201 PIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIVN-EPPPKLPSGVFGAEFQDFV  279 (333)
T ss_pred             CCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHHHHHHhc-CCCccCCCCCcCHHHHHHH
Confidence             332211  111100                                         0000 011111  12457788999


Q ss_pred             HhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          563 LWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       563 ~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      .+||++||.+|||+.|++.||||...
T Consensus       280 ~~~L~~~P~~Rpt~~ell~h~~~~~~  305 (333)
T cd06650         280 NKCLIKNPAERADLKQLMVHAFIKRS  305 (333)
T ss_pred             HHhccCCcccCcCHHHHhhCHHHhcC
Confidence            99999999999999999999999753

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.96  E-value=2.7e-29  Score=292.48  Aligned_cols=245  Identities=17%  Similarity=0.104  Sum_probs=175.7

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++....    .+..++.|+.....  ...+......+..++....|||++.++.....+...+         
T Consensus        53 ~G~fg~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~---------  119 (370)
T cd05621          53 RGAFGEVQLVRHKS----SQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLY---------  119 (370)
T ss_pred             ecCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEE---------
Confidence            34789999887632    24445555442111  1112223345566777889999998776654333333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+||||+||+|.++++..  .++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus       120 -------lv~Ey~~gg~L~~~l~~~--~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~  190 (370)
T cd05621         120 -------MVMEYMPGGDLVNLMSNY--DVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCM  190 (370)
T ss_pred             -------EEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccce
Confidence                   389999999999999754  46777899999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .......                                                                         
T Consensus       191 ~~~~~~~-------------------------------------------------------------------------  197 (370)
T cd05621         191 KMDETGM-------------------------------------------------------------------------  197 (370)
T ss_pred             ecccCCc-------------------------------------------------------------------------
Confidence            6431000                                                                         


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC----CCCccccchhhhHHHHHHcCC---CC
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG----VCTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~----~~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                   ......+||+.|+|||++.+.    .++.++|||||||+||||++|   |.
T Consensus       198 -----------------------------~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~  248 (370)
T cd05621         198 -----------------------------VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFY  248 (370)
T ss_pred             -----------------------------eecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCC
Confidence                                         001145799999999999763    378999999999999999986   44


Q ss_pred             cHHHHHHHHHhccc--cCCCCCCCCCChhHHHHHHhccccCCCC--CCCHHHHhhhhhhhhh
Q 001366          531 SERALAAAMSDLRD--RILPPSFLSENPKEAGFCLWQLHPEPLS--RPTTREILQSEVTNEF  588 (1092)
Q Consensus       531 ~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~li~~lL~~dP~~--Rpsa~eiL~~~~~~~~  588 (1092)
                      ..............  ....|.....++...+|+.+||..+|..  |+++.|+++||||...
T Consensus       249 ~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~~  310 (370)
T cd05621         249 ADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQHPFFKND  310 (370)
T ss_pred             CCCHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcCcccCCC
Confidence            43332222222221  1222333456788999999999855543  8999999999999763

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.96  E-value=3.2e-29  Score=285.34  Aligned_cols=249  Identities=16%  Similarity=0.183  Sum_probs=166.5

Q ss_pred             hhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          217 KTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       217 ~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      +...++.|+||++...+.  ..+..++.|+......   .....++..++...+|||++.+...........        
T Consensus         8 ~lG~G~~g~Vy~~~~~~~--~~~~~~aiK~~~~~~~---~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~--------   74 (317)
T cd07868           8 KVGRGTYGHVYKAKRKDG--KDDRDYALKQIEGTGI---SMSACREIALLRELKHPNVISLQKVFLSHADRK--------   74 (317)
T ss_pred             ccccCCCeEEEEEEEccC--CCCceEEEEEECCCCC---cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcE--------
Confidence            445567899999975331  1123344444322211   123456777888999999998765543211110        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcC--------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE----cc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARG--------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL----LQ  364 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~--------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill----~~  364 (1092)
                       .     .++|+|+. ++|.+++....        ..++...++.|++||+.||+|||++||+||||||+|||+    ..
T Consensus        75 -~-----~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~  147 (317)
T cd07868          75 -V-----WLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPE  147 (317)
T ss_pred             -E-----EEEEeccC-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCC
Confidence             1     13577765 58998885321        246777899999999999999999999999999999999    45


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      .+.+|++|||+++.......                                                            
T Consensus       148 ~~~~kl~DfG~a~~~~~~~~------------------------------------------------------------  167 (317)
T cd07868         148 RGRVKIADMGFARLFNSPLK------------------------------------------------------------  167 (317)
T ss_pred             cCcEEEeecCceeccCCCCc------------------------------------------------------------
Confidence            67899999999876431000                                                            


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~  523 (1092)
                                                              +.......+||++|+|||++.+ ..++.++|||||||++|
T Consensus       168 ----------------------------------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  207 (317)
T cd07868         168 ----------------------------------------PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFA  207 (317)
T ss_pred             ----------------------------------------cccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHH
Confidence                                                    0011124578999999999987 45899999999999999


Q ss_pred             HHcCC---CCcHHH------------HHHHHHh------------------------ccccCC---------CCCCCCCC
Q 001366          524 ELFGR---FDSERA------------LAAAMSD------------------------LRDRIL---------PPSFLSEN  555 (1092)
Q Consensus       524 ell~~---f~~~~~------------~~~~~~~------------------------~~~~~~---------p~~~~~~~  555 (1092)
                      ||+++   |.....            .......                        ......         .......+
T Consensus       208 el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (317)
T cd07868         208 ELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPD  287 (317)
T ss_pred             HHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhhhhhccccCcccccchHHhcCCCCC
Confidence            99986   321110            0000000                        000000         00011234


Q ss_pred             hhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          556 PKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       556 ~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      +.+.+|+.+||++||.+|||++|+|+||||
T Consensus       288 ~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         288 SKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             hHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            567899999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.3e-28  Score=270.39  Aligned_cols=240  Identities=20%  Similarity=0.341  Sum_probs=222.2

Q ss_pred             cCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 001366          826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN  905 (1092)
Q Consensus       826 ~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~  905 (1092)
                      .+..+|.+|.++|. ..+++++-++|.|.||+.++...++.|.-..-+|.+..|-+ ..+.+++|++|..|+||+.+++.
T Consensus        11 ~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~e   88 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGE   88 (794)
T ss_pred             ccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccce
Confidence            36789999999998 88999999999999999999999999998889999999998 78899999999999999999999


Q ss_pred             eeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc--CCCEEEEEECCCeEEE
Q 001366          906 SLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL--DSGTLVTASTDNKLKL  982 (1092)
Q Consensus       906 ~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs--~~~~L~Sgs~Dg~I~v  982 (1092)
                      .+.+|. |..-|.|++.+|..+ ++++++.|-+|++||-.+.-....++.||...|.+|+|.  +.+.++|+|-|++|+|
T Consensus        89 kV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV  167 (794)
T KOG0276|consen   89 KVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV  167 (794)
T ss_pred             eeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence            999998 678899999999997 899999999999999988777778999999999999998  6678999999999999


Q ss_pred             EEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCC--CEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCC
Q 001366          983 WDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTAD--GYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDD 1060 (1092)
Q Consensus       983 WDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg--~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~ 1060 (1092)
                      |.+.        ...+..++.+|...|++|.+-+-|  .||++|++|.+|+|||..+..++++.              ++
T Consensus       168 Wslg--------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL--------------eG  225 (794)
T KOG0276|consen  168 WSLG--------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL--------------EG  225 (794)
T ss_pred             EEcC--------CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh--------------hc
Confidence            9998        456788999999999999998754  59999999999999999988877654              68


Q ss_pred             CCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1061 NGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1061 h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      |..-|+.++|+|.-.+++||+.||+||||.
T Consensus       226 Ht~Nvs~v~fhp~lpiiisgsEDGTvriWh  255 (794)
T KOG0276|consen  226 HTNNVSFVFFHPELPIIISGSEDGTVRIWN  255 (794)
T ss_pred             ccccceEEEecCCCcEEEEecCCccEEEec
Confidence            899999999999999999999999999996

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.96  E-value=4.7e-29  Score=278.68  Aligned_cols=245  Identities=16%  Similarity=0.164  Sum_probs=176.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...+    .+..+++|.......  .........+..++...+|||++.+......+...+         
T Consensus         3 ~G~~g~Vy~~~~~~----~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~---------   69 (277)
T cd05607           3 KGGFGEVCAVQVKN----TGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLC---------   69 (277)
T ss_pred             CCCceEEEEEEEcc----CCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEE---------
Confidence            57889999987632    244555544321111  111222334666788889999998665544333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                             .+|||+.|++|.+++...+ ..++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||++
T Consensus        70 -------lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~  142 (277)
T cd05607          70 -------LVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLA  142 (277)
T ss_pred             -------EEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceee
Confidence                   3899999999999986543 35777788999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      .......                                                                         
T Consensus       143 ~~~~~~~-------------------------------------------------------------------------  149 (277)
T cd05607         143 VELKDGK-------------------------------------------------------------------------  149 (277)
T ss_pred             eecCCCc-------------------------------------------------------------------------
Confidence            6533100                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                     ......||..|+|||.+.+..++.++|||||||+||||+++   |....
T Consensus       150 -------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~  198 (277)
T cd05607         150 -------------------------------TITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHK  198 (277)
T ss_pred             -------------------------------eeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCc
Confidence                                           00123578889999999998899999999999999999986   33221


Q ss_pred             ---HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH----HHHhhhhhhhhh
Q 001366          534 ---ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT----REILQSEVTNEF  588 (1092)
Q Consensus       534 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa----~eiL~~~~~~~~  588 (1092)
                         ..............+......++++.+|+.+||.+||.+||++    .+++.|+||...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~~h~~f~~~  260 (277)
T cd05607         199 EKVAKEELKRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFKTI  260 (277)
T ss_pred             chhhHHHHHHHhhccccccccccCCHHHHHHHHHHhccCHhhCCCCccchhhhhcChhhcCC
Confidence               1112222222222222233567889999999999999999999    667899999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.96  E-value=6.3e-29  Score=288.42  Aligned_cols=255  Identities=15%  Similarity=0.169  Sum_probs=175.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  ++.|+||++...    ..+..++.|+..... .........++..++...+|||++.++.....+....  
T Consensus        23 y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~--   96 (359)
T cd07876          23 YQQLKPIGSGAQGIVCAAFDT----VLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLE--   96 (359)
T ss_pred             eEEEEEeecCCCEEEEEEEEc----CCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcc--
Confidence            4444433  468999999762    234556665543221 2223344456677888889999998766543322111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                         ..     .....+|||+++ +|.+++..   .++...+..++.||+.||+|||++||+||||||+|||++.++.+||
T Consensus        97 ---~~-----~~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl  164 (359)
T cd07876          97 ---EF-----QDVYLVMELMDA-NLCQVIHM---ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKI  164 (359)
T ss_pred             ---cc-----ceeEEEEeCCCc-CHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEE
Confidence               00     011247899876 57666643   3677789999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.....                                                                    
T Consensus       165 ~Dfg~a~~~~~~--------------------------------------------------------------------  176 (359)
T cd07876         165 LDFGLARTACTN--------------------------------------------------------------------  176 (359)
T ss_pred             ecCCCccccccC--------------------------------------------------------------------
Confidence            999988653200                                                                    


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC--
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                          ...+...||+.|+|||++.+..++.++|||||||+||||+++  
T Consensus       177 ------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~  220 (359)
T cd07876         177 ------------------------------------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSV  220 (359)
T ss_pred             ------------------------------------ccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCC
Confidence                                                001134688999999999999999999999999999999986  


Q ss_pred             -CCcHHHHHHHHHhc----------------------cc-cCCC--------C---------CCCCCChhHHHHHHhccc
Q 001366          529 -FDSERALAAAMSDL----------------------RD-RILP--------P---------SFLSENPKEAGFCLWQLH  567 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~----------------------~~-~~~p--------~---------~~~~~~~~~~~li~~lL~  567 (1092)
                       |.+......+....                      .. ...+        +         .....++.+.+|+.+||+
T Consensus       221 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~  300 (359)
T cd07876         221 IFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLV  300 (359)
T ss_pred             CCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhc
Confidence             43322211110000                      00 0000        0         001124668899999999


Q ss_pred             cCCCCCCCHHHHhhhhhhhhhhc
Q 001366          568 PEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       568 ~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      +||++|||+.|+|+||||.....
T Consensus       301 ~dP~~R~t~~e~l~hp~~~~~~~  323 (359)
T cd07876         301 IDPDKRISVDEALRHPYITVWYD  323 (359)
T ss_pred             cCcccCCCHHHHhcCchhhhhcC
Confidence            99999999999999999986443

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=1.4e-29  Score=288.86  Aligned_cols=246  Identities=17%  Similarity=0.185  Sum_probs=178.9

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|.||++..... ...+..++.|++...... .+......+..++...+|||++.++.....+...+          
T Consensus         6 ~G~~g~Vy~~~~~~~-~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~----------   74 (318)
T cd05582           6 QGSFGKVFLVRKITG-PDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLY----------   74 (318)
T ss_pred             eCCCEEEEEEEEecc-CCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEE----------
Confidence            457899998654211 112455566555322211 12233445666788889999998766654333222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            ++|||++|++|.+++.... .+++.+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++.
T Consensus        75 ------lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~  147 (318)
T cd05582          75 ------LILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKE  147 (318)
T ss_pred             ------EEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcc
Confidence                  3899999999999997654 477879999999999999999999999999999999999999999999998765


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       148 ~~~~~---------------------------------------------------------------------------  152 (318)
T cd05582         148 SIDHE---------------------------------------------------------------------------  152 (318)
T ss_pred             cCCCC---------------------------------------------------------------------------
Confidence            32100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                  ......+||+.|+|||.+.+..++.++|||||||+||||+++   |......
T Consensus       153 ----------------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~  204 (318)
T cd05582         153 ----------------------------KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRK  204 (318)
T ss_pred             ----------------------------CceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHH
Confidence                                        001145689999999999988899999999999999999986   4433332


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      ...........  ......++.+.+|+.+||++||.+||+     ..+++.||||...
T Consensus       205 ~~~~~i~~~~~--~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~  260 (318)
T cd05582         205 ETMTMILKAKL--GMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTI  260 (318)
T ss_pred             HHHHHHHcCCC--CCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCC
Confidence            22222222221  111234788999999999999999999     6779999999753

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.96  E-value=3.2e-29  Score=286.55  Aligned_cols=243  Identities=16%  Similarity=0.164  Sum_probs=170.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhcc-CCCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVAS-NASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .+|.|.||++....    .+..++.|+......  .........+...+.. ..|++++.+......+...+        
T Consensus        10 ~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~--------   77 (323)
T cd05616          10 KGSFGKVMLAERKG----TDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLY--------   77 (323)
T ss_pred             eCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEE--------
Confidence            35789999997632    234455554422111  1111222223333333 35666665444332222222        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              ++|||++||+|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++
T Consensus        78 --------lv~E~~~~g~L~~~~~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~  148 (323)
T cd05616          78 --------FVMEYVNGGDLMYQIQQVG-RFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMC  148 (323)
T ss_pred             --------EEEcCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCc
Confidence                    4899999999999997665 4677799999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +......                                                                         
T Consensus       149 ~~~~~~~-------------------------------------------------------------------------  155 (323)
T cd05616         149 KENMWDG-------------------------------------------------------------------------  155 (323)
T ss_pred             eecCCCC-------------------------------------------------------------------------
Confidence            6522000                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    ......+||+.|+|||++.+..++.++|||||||+||||+++   |....
T Consensus       156 ------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~  205 (323)
T cd05616         156 ------------------------------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED  205 (323)
T ss_pred             ------------------------------CccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCC
Confidence                                          001145689999999999999999999999999999999986   44433


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH-----HHHhhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT-----REILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa-----~eiL~~~~~~~~  588 (1092)
                      ...............|  ...++++.+|+.+||+++|.+|+++     .++++||||...
T Consensus       206 ~~~~~~~i~~~~~~~p--~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~~  263 (323)
T cd05616         206 EDELFQSIMEHNVAYP--KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYI  263 (323)
T ss_pred             HHHHHHHHHhCCCCCC--CcCCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCCC
Confidence            3333222222222222  2457889999999999999999984     899999999753

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.4e-27  Score=254.36  Aligned_cols=279  Identities=19%  Similarity=0.312  Sum_probs=230.6

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCC--CCEEEEEECCCcEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI--KNYLASADYDGVVK  854 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~LaSgs~DgtV~  854 (1092)
                      .|.+.|.+|...  ++.+++|+.||.++|||...        .......+|.++|.+++|...+  ...|+++|.|.+++
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G--------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~  172 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG--------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR  172 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCC--------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence            588999998877  78999999999999999865        3345667899999999985431  34699999999999


Q ss_pred             EEECCCCc----eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCC-------------------------Cc
Q 001366          855 LWDACTGQ----TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE-------------------------KN  905 (1092)
Q Consensus       855 IWD~~tg~----~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~-------------------------~~  905 (1092)
                      +|..+.+.    ++..-.||...|-+|+..+ ++..++|||.|.+|+||+..+                         +.
T Consensus       173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             EEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence            99988764    3334459999999999999 899999999999999999321                         12


Q ss_pred             eeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEE
Q 001366          906 SLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLW  983 (1092)
Q Consensus       906 ~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vW  983 (1092)
                      ++.++. |...|.+|.|++.+  .+.+++.|.+|+.||+.++.. ...+. -.....++.++ ....|++||+|..|++|
T Consensus       252 P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~-~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~  327 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGL-KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLW  327 (423)
T ss_pred             ceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecccc-eeeee-cCcceeEeecccccceeeecCCCCceeec
Confidence            344444 66789999999854  799999999999999998764 33333 35678999998 56789999999999999


Q ss_pred             EcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC-EEEEEecCCcEEEEeCCCCC-ceeeeeccccCCCCCccccCCC
Q 001366          984 DLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG-YIACGSESNEVYAYHRSLPM-PITSYKFGSIDPISGKETDDDN 1061 (1092)
Q Consensus       984 Dl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~I~Iwd~~~~~-~i~~~~~~~~~~i~~~~~~~~h 1061 (1092)
                      |-+++.     .....++|.+|.+.|.++.|+|... .|++||.||++++||+.... ++..+              .+|
T Consensus       328 DPR~~~-----gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI--------------~~h  388 (423)
T KOG0313|consen  328 DPRTGD-----GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI--------------AGH  388 (423)
T ss_pred             CCCCCC-----CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee--------------ccC
Confidence            999753     2455678999999999999999765 58899999999999998776 76654              467


Q ss_pred             CCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1062 GLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1062 ~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      +..|.++.|. ++..+++||.|..|+|++
T Consensus       389 ~DKvl~vdW~-~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  389 NDKVLSVDWN-EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             CceEEEEecc-CCceEEeccCcceEEEec
Confidence            8999999998 667899999999999985

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.96  E-value=2.9e-29  Score=291.33  Aligned_cols=279  Identities=15%  Similarity=0.094  Sum_probs=179.5

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...+    .+..++.|+......  .........+..++...+||+++.++.....+...+         
T Consensus        11 ~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~---------   77 (360)
T cd05627          11 RGAFGEVRLVQKKD----TGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLY---------   77 (360)
T ss_pred             eCCCEEEEEEEECC----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEE---------
Confidence            35789999987632    345556655432211  111122233455677789999988766544333223         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++||||.|++|.++|...+ .++...++.++.||+.||+|||++||+||||||+||||+.++.+|++|||+++
T Consensus        78 -------lv~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~  149 (360)
T cd05627          78 -------LIMEFLPGGDMMTLLMKKD-TLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCT  149 (360)
T ss_pred             -------EEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCc
Confidence                   3899999999999997654 46777899999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+..........       ..                   ....                        -.++..      
T Consensus       150 ~~~~~~~~~~~~-------~~-------------------~~~~------------------------~~~~~~------  173 (360)
T cd05627         150 GLKKAHRTEFYR-------NL-------------------THNP------------------------PSDFSF------  173 (360)
T ss_pred             cccccccccccc-------cc-------------------ccCC------------------------cccccc------
Confidence            654211100000       00                   0000                        000000      


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                  +.+....................+||+.|+|||++.+..++.++|||||||+||||++|   |.....
T Consensus       174 ------------~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~  241 (360)
T cd05627         174 ------------QNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETP  241 (360)
T ss_pred             ------------cccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCH
Confidence                        00000000000000001112256899999999999999999999999999999999986   433333


Q ss_pred             HHHHHHhcc--ccCCCCCCCCCChhHHHHHHhccccCCCCCC---CHHHHhhhhhhhhh
Q 001366          535 LAAAMSDLR--DRILPPSFLSENPKEAGFCLWQLHPEPLSRP---TTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~--~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp---sa~eiL~~~~~~~~  588 (1092)
                      .........  .....|.....++++.+|+.+|+ .+|.+|+   ++.++++||||...
T Consensus       242 ~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~  299 (360)
T cd05627         242 QETYRKVMNWKETLVFPPEVPISEKAKDLILRFC-TDSENRIGSNGVEEIKSHPFFEGV  299 (360)
T ss_pred             HHHHHHHHcCCCceecCCCCCCCHHHHHHHHHhc-cChhhcCCCCCHHHHhcCCCCCCC
Confidence            222222221  11222223345788999999987 4999998   47999999999874

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.5e-27  Score=241.27  Aligned_cols=244  Identities=21%  Similarity=0.346  Sum_probs=213.8

Q ss_pred             eeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 001366          823 VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN  902 (1092)
Q Consensus       823 ~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~  902 (1092)
                      ....+.++|..+.|+-+ +++.++|+.|.+|++|+...|.+++++.+|...|..++.+. +...|++|+.|..|.+||++
T Consensus        12 ~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             eecccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEcc
Confidence            44567899999999998 99999999999999999999999999999999999999998 78899999999999999999


Q ss_pred             CCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCC-cceEEecCCCCCeEEEEEcCCCEEEEEECCCeE
Q 001366          903 EKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNAR-APWCVLAGHEKAVSYVKFLDSGTLVTASTDNKL  980 (1092)
Q Consensus       903 ~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~-~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I  980 (1092)
                      +|+.++.+. |.+.|+.++|+.+.+ .+++|+.|..+++||.|+.. .|+.++..-...|.+|... +..|++||.||++
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~heIvaGS~DGtv  167 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHEIVAGSVDGTV  167 (307)
T ss_pred             cCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccEEEeeccCCcE
Confidence            999999998 678999999998875 99999999999999999754 4777887788899999985 6678999999999


Q ss_pred             EEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCC
Q 001366          981 KLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDD 1060 (1092)
Q Consensus       981 ~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~ 1060 (1092)
                      +.||++.+        .....+.  ..+|++++|++++...++++.|+++++.|..+|+.+..++ |       +    .
T Consensus       168 RtydiR~G--------~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-G-------h----k  225 (307)
T KOG0316|consen  168 RTYDIRKG--------TLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-G-------H----K  225 (307)
T ss_pred             EEEEeecc--------eeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-c-------c----c
Confidence            99999953        3333333  4589999999999999999999999999999999988775 1       1    1


Q ss_pred             CCCCEEEEEEeCCCCEEEEEecCCeEEEEEcC
Q 001366         1061 NGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092 (1092)
Q Consensus      1061 h~~~V~sva~spd~~~Lasgs~DG~V~vW~lv 1092 (1092)
                      ....-..+|++.....+++|+.||.|.+|+|+
T Consensus       226 n~eykldc~l~qsdthV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  226 NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             cceeeeeeeecccceeEEeccCCceEEEEEec
Confidence            12345667888888999999999999999986

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.96  E-value=4.3e-29  Score=282.28  Aligned_cols=256  Identities=15%  Similarity=0.184  Sum_probs=180.4

Q ss_pred             chhHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          211 FSEFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       211 f~~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      +..|.+.+.+  ++.|+||++...    ..++.++.|...............++..++...+|||++.+.+....+...+
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~   80 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSK----LTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLT   80 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEc----CCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEE
Confidence            3456666555  468999999752    2234455544322222222233445677788889999998776654333222


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      ++|||+. ++|.+++...+..++...++.++.||+.||+|||++||+||||||+||+++.++.+
T Consensus        81 ----------------lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~  143 (301)
T cd07873          81 ----------------LVFEYLD-KDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGEL  143 (301)
T ss_pred             ----------------EEEeccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcE
Confidence                            3799997 49999998766678888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||+++....+.                                                                 
T Consensus       144 kl~dfg~~~~~~~~~-----------------------------------------------------------------  158 (301)
T cd07873         144 KLADFGLARAKSIPT-----------------------------------------------------------------  158 (301)
T ss_pred             EECcCcchhccCCCC-----------------------------------------------------------------
Confidence            999999886532100                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                            .......+++.|+|||.+.+ ..++.++|||||||++|||++
T Consensus       159 --------------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t  200 (301)
T cd07873         159 --------------------------------------KTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMST  200 (301)
T ss_pred             --------------------------------------CcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHh
Confidence                                                  00012356788999999876 457899999999999999999


Q ss_pred             C---CCcHHHHHHH---HHhccc-----------------cCCCC--------CCCCCChhHHHHHHhccccCCCCCCCH
Q 001366          528 R---FDSERALAAA---MSDLRD-----------------RILPP--------SFLSENPKEAGFCLWQLHPEPLSRPTT  576 (1092)
Q Consensus       528 ~---f~~~~~~~~~---~~~~~~-----------------~~~p~--------~~~~~~~~~~~li~~lL~~dP~~Rpsa  576 (1092)
                      +   |.........   +..+..                 ...|.        .....++.+.+|+.+||++||.+|||+
T Consensus       201 g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~  280 (301)
T cd07873         201 GRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISA  280 (301)
T ss_pred             CCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCH
Confidence            7   4332221111   111100                 00010        012346778899999999999999999


Q ss_pred             HHHhhhhhhhhhhc
Q 001366          577 REILQSEVTNEFQE  590 (1092)
Q Consensus       577 ~eiL~~~~~~~~~~  590 (1092)
                      .|+|+||||....+
T Consensus       281 ~eil~h~~f~~~~~  294 (301)
T cd07873         281 EEAMKHPYFHCLGE  294 (301)
T ss_pred             HHHhcCcccccccc
Confidence            99999999987643

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=2e-27  Score=262.57  Aligned_cols=291  Identities=15%  Similarity=0.248  Sum_probs=231.1

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|+..|++++++|.|..|++||.|.+|++||+.....  .-.............|.++.|++. +..|++.+.....
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda--s~~~fr~l~P~E~h~i~sl~ys~T-g~~iLvvsg~aqa  238 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA--SMRSFRQLQPCETHQINSLQYSVT-GDQILVVSGSAQA  238 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccc--cchhhhccCcccccccceeeecCC-CCeEEEEecCcce
Confidence            4678999999999999999999999999999999986221  111122222234567999999998 7777777778899


Q ss_pred             EEEECCCCceE------------EEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc-eeeeEecC------C
Q 001366          854 KLWDACTGQTV------------SHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN-SLATIKNI------A  914 (1092)
Q Consensus       854 ~IWD~~tg~~i------------~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~-~l~~l~~~------~  914 (1092)
                      +|+|-...+.+            ..-+||...++|.+|+|.+...|+|++.||+++|||+...+ .+..|++.      -
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            99996433221            22358999999999999888899999999999999997543 45555532      3


Q ss_pred             ceEEEEEccCCCeEEEEEECCCeEEEEEcCCCC--cceEEecCCCC--CeEEEEEc-CCCEEEEEECCCeEEEEEcCCCC
Q 001366          915 NVCCVQFSAHSSHLLAFGSADYRTYCYDLRNAR--APWCVLAGHEK--AVSYVKFL-DSGTLVTASTDNKLKLWDLKRTS  989 (1092)
Q Consensus       915 ~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~--~~~~~l~~H~~--~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~  989 (1092)
                      .+++++|+|++. +||+|+.||.|.+||.++..  ..+++-.+|..  .|+||.|+ ++++|+|-+.|++++|||++.. 
T Consensus       319 ~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~-  396 (641)
T KOG0772|consen  319 PVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF-  396 (641)
T ss_pred             CceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc-
Confidence            589999999996 89999999999999987543  23456678887  99999999 8999999999999999999964 


Q ss_pred             CCCCCCCceeEEEcCCC--CCeEEEEEecCCCEEEEEec------CCcEEEEeCCCCCceeeeeccccCCCCCccccCCC
Q 001366          990 HTGPSTNACSLTFSGHT--NEKNFVGLSTADGYIACGSE------SNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDN 1061 (1092)
Q Consensus       990 ~~~~~~~~~~~~l~~h~--~~V~~v~~spdg~~lasgs~------Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h 1061 (1092)
                            .+++.+..+-.  .+-+.++|||+.++|++|+.      .+.+++||..+-..++.+.+.              
T Consensus       397 ------kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--------------  456 (641)
T KOG0772|consen  397 ------KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--------------  456 (641)
T ss_pred             ------ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--------------
Confidence                  34455544432  23467899999999999874      468999998888888877541              


Q ss_pred             CCCEEEEEEeCCCCEEEEEecCCeEEEE
Q 001366         1062 GLFVSSVCWRRRSDMVVAANSSGCIKVL 1089 (1092)
Q Consensus      1062 ~~~V~sva~spd~~~Lasgs~DG~V~vW 1089 (1092)
                      +..|..+.|+|.=+.|.+|+.||.++||
T Consensus       457 ~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  457 TASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             CceEEEEeecchhhheeeecCCCceEEE
Confidence            4568999999999999999999999987

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=4.8e-29  Score=276.03  Aligned_cols=254  Identities=17%  Similarity=0.151  Sum_probs=191.3

Q ss_pred             hHHHhhhcc-c-cceeeeCCCCCccccccccccccccccccCchh-hHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK-G-KGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~-g-~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      -|.+-+|++ | +.||-.+.-    --+++++++||.--+-.+.- ..-.+.+++.+.-..||||+.+++..-.+.-++ 
T Consensus        19 LYDLekTlG~GHFAVVKLArH----VFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKly-   93 (864)
T KOG4717|consen   19 LYDLEKTLGRGHFAVVKLARH----VFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLY-   93 (864)
T ss_pred             eehhhhhhcCCceehhhhhhh----hcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEE-
Confidence            377777776 2 455555443    22478888877643333332 234566666667779999998877644333334 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc-CCcE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ-SNQV  368 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~-~~~v  368 (1092)
                                     ++.|.-+||+|.|||-++..-+++..+..||+||+.|+.|||+..||||||||+|+.+.+ -|-|
T Consensus        94 ---------------LiLELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlV  158 (864)
T KOG4717|consen   94 ---------------LILELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLV  158 (864)
T ss_pred             ---------------EEEEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCce
Confidence                           268888999999999777777888899999999999999999999999999999998864 5899


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |+.|||++..+.                                                                    
T Consensus       159 KLTDFGFSNkf~--------------------------------------------------------------------  170 (864)
T KOG4717|consen  159 KLTDFGFSNKFQ--------------------------------------------------------------------  170 (864)
T ss_pred             EeeeccccccCC--------------------------------------------------------------------
Confidence            999999775533                                                                    


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCC-ccccchhhhHHHHHHcC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCT-TSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t-~~sDIwSLGvll~ell~  527 (1092)
                                                          |-..+++.||+..|-|||+|.|..|+ +++||||||||||-|+|
T Consensus       171 ------------------------------------PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVC  214 (864)
T KOG4717|consen  171 ------------------------------------PGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVC  214 (864)
T ss_pred             ------------------------------------CcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHh
Confidence                                                33446688999999999999998886 68999999999999999


Q ss_pred             C---CCcHHHHHHHHHhcc-ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhccch
Q 001366          528 R---FDSERALAAAMSDLR-DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCA  593 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~~~  593 (1092)
                      |   |...++-..+-.++. ....|..   .+.++++||..||..||.+|.+.+||..++|++.......
T Consensus       215 Gq~PFqeANDSETLTmImDCKYtvPsh---vS~eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq~~D~~~s  281 (864)
T KOG4717|consen  215 GQPPFQEANDSETLTMIMDCKYTVPSH---VSKECRDLIQSMLVRDPKKRASLEEIVSTSWLQAGDRGLS  281 (864)
T ss_pred             CCCccccccchhhhhhhhcccccCchh---hhHHHHHHHHHHHhcCchhhccHHHHhccccccCCCCCcc
Confidence            7   433333222222222 2233333   3788999999999999999999999999999987655443

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.96  E-value=3.8e-29  Score=289.72  Aligned_cols=250  Identities=17%  Similarity=0.127  Sum_probs=180.9

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCC------CCCCCccccceecC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNA------SPKPVGVGTAVVSN  284 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  284 (1092)
                      .|.|...++  -+|.|.|+..    ..+++.+|.||.-  +...-.+.+..+.++|...+      .-|++..++-..+.
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d----~~T~e~VAIKIiK--N~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr  260 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYD----HKTGEIVAIKIIK--NKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFR  260 (586)
T ss_pred             EEEEEEEecccccceeEEEEe----cCCCcEEEEEeec--cChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccc
Confidence            576666665  3688888877    3357888887762  33444455555555555443      22444444444444


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH-KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~-~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                      .-++                 +..++-+.+|.++|+.... .++...++.|..|||.||.+||..||||+||||+||||.
T Consensus       261 ~Hlc-----------------iVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~  323 (586)
T KOG0667|consen  261 NHLC-----------------IVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLK  323 (586)
T ss_pred             ccee-----------------eeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeec
Confidence            4444                 5777789999999987643 477888999999999999999999999999999999998


Q ss_pred             cC--CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          364 QS--NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       364 ~~--~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      ..  ..|||||||.+.....                                                            
T Consensus       324 ~~~r~~vKVIDFGSSc~~~q------------------------------------------------------------  343 (586)
T KOG0667|consen  324 DPKRSRIKVIDFGSSCFESQ------------------------------------------------------------  343 (586)
T ss_pred             cCCcCceeEEecccccccCC------------------------------------------------------------
Confidence            54  4699999998865330                                                            


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                                                                    .+...+.++.|+|||+|.|.+|+.+.||||||||
T Consensus       344 ----------------------------------------------~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCI  377 (586)
T KOG0667|consen  344 ----------------------------------------------RVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCI  377 (586)
T ss_pred             ----------------------------------------------cceeeeeccccccchhhccCCCCCccceeehhhh
Confidence                                                          1115678899999999999999999999999999


Q ss_pred             HHHHcCC---CCcHHHHHHHHHhccccC----------------------------------------------------
Q 001366          522 FFELFGR---FDSERALAAAMSDLRDRI----------------------------------------------------  546 (1092)
Q Consensus       522 l~ell~~---f~~~~~~~~~~~~~~~~~----------------------------------------------------  546 (1092)
                      ++||++|   |+++.+..++.....-.-                                                    
T Consensus       378 lAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~  457 (586)
T KOG0667|consen  378 LAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLER  457 (586)
T ss_pred             HHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccchhhhhhhhhhcccc
Confidence            9999997   676655444422211100                                                    


Q ss_pred             -CCCC-------CC-CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhcc
Q 001366          547 -LPPS-------FL-SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEV  591 (1092)
Q Consensus       547 -~p~~-------~~-~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~  591 (1092)
                       .|+.       +. .....+.+|+++||.+||..|+|+.++|+||||......
T Consensus       458 ~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~~~~~  511 (586)
T KOG0667|consen  458 RGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFLTGTSLE  511 (586)
T ss_pred             cCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCccccccccc
Confidence             1101       11 122346899999999999999999999999999865443

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.96  E-value=8.2e-29  Score=287.98  Aligned_cols=257  Identities=15%  Similarity=0.156  Sum_probs=176.3

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.+  +|.|+||++....    .+..++.|+.... ..........++..++...+|||++.++.......... 
T Consensus        25 ~y~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~-   99 (364)
T cd07875          25 RYQNLKPIGSGAQGIVCAAYDAI----LERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLE-   99 (364)
T ss_pred             ceeEEEEeecCCCeEEEEEEECC----CCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccc-
Confidence            34444444  4789999997522    2444555544322 12223344556677788889999998665433211110 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                          ..     .....+|||+++ +|.+++..   .++...+..++.||+.||+|||++||+||||||+|||++.++.+|
T Consensus       100 ----~~-----~~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~k  166 (364)
T cd07875         100 ----EF-----QDVYIVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLK  166 (364)
T ss_pred             ----cc-----CeEEEEEeCCCC-CHHHHHHh---cCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEE
Confidence                00     001247999875 78887754   366778899999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++.....                                                                   
T Consensus       167 L~DfG~a~~~~~~-------------------------------------------------------------------  179 (364)
T cd07875         167 ILDFGLARTAGTS-------------------------------------------------------------------  179 (364)
T ss_pred             EEeCCCccccCCC-------------------------------------------------------------------
Confidence            9999988653210                                                                   


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ...+...||+.|+|||++.+..++.++|||||||+||||+++ 
T Consensus       180 -------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~  222 (364)
T cd07875         180 -------------------------------------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG  222 (364)
T ss_pred             -------------------------------------CcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCC
Confidence                                                 001134688999999999999999999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhccccCC--------------------C--------------------CCCCCCChhHHHHHHhcc
Q 001366          529 --FDSERALAAAMSDLRDRIL--------------------P--------------------PSFLSENPKEAGFCLWQL  566 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~--------------------p--------------------~~~~~~~~~~~~li~~lL  566 (1092)
                        |.+..........+.....                    |                    .........+.+|+.+||
T Consensus       223 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL  302 (364)
T cd07875         223 VLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKML  302 (364)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhc
Confidence              5443322222111110000                    0                    001112356789999999


Q ss_pred             ccCCCCCCCHHHHhhhhhhhhhhcc
Q 001366          567 HPEPLSRPTTREILQSEVTNEFQEV  591 (1092)
Q Consensus       567 ~~dP~~Rpsa~eiL~~~~~~~~~~~  591 (1092)
                      +.||.+|||+.++|+||||....++
T Consensus       303 ~~dP~~R~t~~e~L~hp~~~~~~~~  327 (364)
T cd07875         303 VIDASKRISVDEALQHPYINVWYDP  327 (364)
T ss_pred             CcCcccCCCHHHHhcCcccccccCc
Confidence            9999999999999999999864443

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=3.8e-26  Score=250.03  Aligned_cols=282  Identities=24%  Similarity=0.341  Sum_probs=231.1

Q ss_pred             hhhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 001366          725 LLRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKK  802 (1092)
Q Consensus       725 ~l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~  802 (1092)
                      .+++|.+.+.....    +++.  .+.+..|+.+.+|++.......     .+..|...+.++.|+|++++|++++.|+.
T Consensus         4 ~~~~h~~~i~~~~~----~~~~~~l~~~~~~g~i~i~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~~~~   74 (289)
T cd00200           4 TLKGHTGGVTCVAF----SPDGKLLATGSGDGTIKVWDLETGELLR-----TLKGHTGPVRDVAASADGTYLASGSSDKT   74 (289)
T ss_pred             HhcccCCCEEEEEE----cCCCCEEEEeecCcEEEEEEeeCCCcEE-----EEecCCcceeEEEECCCCCEEEEEcCCCe
Confidence            34556655554433    4432  3455679999999987554222     34578889999999999999999999999


Q ss_pred             EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecC
Q 001366          803 IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQV  882 (1092)
Q Consensus       803 I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~  882 (1092)
                      |++|++...       ........|...|.+++|+++ +.++++++.||.|++||+.+++....+..|...|.+++|+| 
T Consensus        75 i~i~~~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  145 (289)
T cd00200          75 IRLWDLETG-------ECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-  145 (289)
T ss_pred             EEEEEcCcc-------cceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-
Confidence            999998752       122233467789999999997 78888888899999999998998889989999999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCceeeeEec-CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeE
Q 001366          883 HPTKLASGSDDCSVKLWNINEKNSLATIKN-IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVS  961 (1092)
Q Consensus       883 ~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~-~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~  961 (1092)
                      ++.++++++.|+.|++||+++++.+..+.. ...+.++.|+|++. .+++++.|+.|++||++..+ .+..+..|...+.
T Consensus       146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~  223 (289)
T cd00200         146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVN  223 (289)
T ss_pred             cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCCCc-eecchhhcCCceE
Confidence            678888888899999999998888888874 55899999999985 77778889999999998754 3556668899999


Q ss_pred             EEEEcC-CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          962 YVKFLD-SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       962 ~v~fs~-~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      ++.|++ +.++++++.|+.|++||+.+        ......+..|...+.+++|+|++.+|++++.|+.|++|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~i~i~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         224 SVAFSPDGYLLASGSEDGTIRVWDLRT--------GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEEcCCCcEEEEEcCCCcEEEEEcCC--------ceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999995 55666666799999999983        456677778999999999999999999999999999995

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=5.1e-27  Score=279.59  Aligned_cols=266  Identities=21%  Similarity=0.336  Sum_probs=225.7

Q ss_pred             EeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCC
Q 001366          749 GAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNR  828 (1092)
Q Consensus       749 ~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~  828 (1092)
                      .+..|+++++|....... ..+  ..+.+|...|++++|+|++.++++|+.|++|+|||+..      .........+|.
T Consensus       176 ~~~~~~~i~~~~~~~~~~-~~~--~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~------~~~~~~~l~gH~  246 (456)
T KOG0266|consen  176 AASSDGLIRIWKLEGIKS-NLL--RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD------DGRNLKTLKGHS  246 (456)
T ss_pred             EccCCCcEEEeecccccc-hhh--ccccccccceeeeEECCCCcEEEEecCCceEEEeeccC------CCeEEEEecCCC
Confidence            556889999999754442 112  23578999999999999999999999999999999832      123445667999


Q ss_pred             CCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc--e
Q 001366          829 SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN--S  906 (1092)
Q Consensus       829 ~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~--~  906 (1092)
                      ..|++++|+|. ++++++|+.|++|+|||+.+++++..+.+|...|++++|++ ++..|++++.|+.|+|||+.++.  +
T Consensus       247 ~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~  324 (456)
T KOG0266|consen  247 TYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLC  324 (456)
T ss_pred             CceEEEEecCC-CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceee
Confidence            99999999999 69999999999999999999999999999999999999999 99999999999999999999998  5


Q ss_pred             eeeEec-C-C-ceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEE---Ec-CCCEEEEEECCCe
Q 001366          907 LATIKN-I-A-NVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVK---FL-DSGTLVTASTDNK  979 (1092)
Q Consensus       907 l~~l~~-~-~-~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~---fs-~~~~L~Sgs~Dg~  979 (1092)
                      +..+.. . . .+++++|+|++. ++++++.|+.+++||++.... ...+.+|...+.++.   ++ .+.++++|+.|+.
T Consensus       325 ~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~  402 (456)
T KOG0266|consen  325 LKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRSGKS-VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS  402 (456)
T ss_pred             eecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccCCcc-eeeecccCCcceeEecccccCCCCeEEEEeCCce
Confidence            566652 2 2 689999999996 899999999999999998764 466777877544432   22 6778999999999


Q ss_pred             EEEEEcCCCCCCCCCCCceeEEEcCC-CCCeEEEEEecCCCEEEEEe--cCCcEEEEeC
Q 001366          980 LKLWDLKRTSHTGPSTNACSLTFSGH-TNEKNFVGLSTADGYIACGS--ESNEVYAYHR 1035 (1092)
Q Consensus       980 I~vWDl~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~lasgs--~Dg~I~Iwd~ 1035 (1092)
                      |.+||+.+        ...+..+.+| ...+..+.++|...++++++  .|+.|++|..
T Consensus       403 v~~~~~~s--------~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  403 VYVWDSSS--------GGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             EEEEeCCc--------cchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence            99999983        4567788899 88899999999999999998  7899999954

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.96  E-value=8.7e-29  Score=286.75  Aligned_cols=256  Identities=15%  Similarity=0.177  Sum_probs=175.5

Q ss_pred             hHHHhhhc--cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.+  +|.|+||++...    ..+..++.|+..... .........++..++...+|||++.++.......... 
T Consensus        18 ~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~-   92 (355)
T cd07874          18 RYQNLKPIGSGAQGIVCAAYDA----VLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLE-   92 (355)
T ss_pred             ceeEEEEeeecCCEEEEEEEec----CCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccc-
Confidence            34444433  478999998763    224455555443221 2223344556677788889999998766543222111 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                          ..     .....+|||+++ +|.+++..   .++...+..++.||+.||+|||++||+||||||+|||++.++.+|
T Consensus        93 ----~~-----~~~~lv~e~~~~-~l~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~k  159 (355)
T cd07874          93 ----EF-----QDVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLK  159 (355)
T ss_pred             ----cc-----ceeEEEhhhhcc-cHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEE
Confidence                00     111247999976 67777754   367778899999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++.....                                                                   
T Consensus       160 l~Dfg~~~~~~~~-------------------------------------------------------------------  172 (355)
T cd07874         160 ILDFGLARTAGTS-------------------------------------------------------------------  172 (355)
T ss_pred             EeeCcccccCCCc-------------------------------------------------------------------
Confidence            9999988653310                                                                   


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           .......||+.|+|||++.+..++.++|||||||+||||+++ 
T Consensus       173 -------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~  215 (355)
T cd07874         173 -------------------------------------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK  215 (355)
T ss_pred             -------------------------------------cccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCC
Confidence                                                 001134688999999999998999999999999999999985 


Q ss_pred             --CCcHHHHHHHHHhcc----------------------cc------CCCCC------------CCCCChhHHHHHHhcc
Q 001366          529 --FDSERALAAAMSDLR----------------------DR------ILPPS------------FLSENPKEAGFCLWQL  566 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~----------------------~~------~~p~~------------~~~~~~~~~~li~~lL  566 (1092)
                        |.+..........+.                      ..      .+|..            .......+.+|+.+||
T Consensus       216 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL  295 (355)
T cd07874         216 ILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKML  295 (355)
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHh
Confidence              443322111110000                      00      00100            0112356789999999


Q ss_pred             ccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          567 HPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       567 ~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      .+||++|||+.|+|+||||....+
T Consensus       296 ~~dP~~Rps~~ell~hp~~~~~~~  319 (355)
T cd07874         296 VIDPAKRISVDEALQHPYINVWYD  319 (355)
T ss_pred             cCCchhcCCHHHHhcCcchhcccC
Confidence            999999999999999999985533

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.96  E-value=3.9e-29  Score=286.36  Aligned_cols=245  Identities=16%  Similarity=0.118  Sum_probs=172.7

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ..++.|.||++...+    .+..++.|+.......  ........+..++... .||+++.+..........+       
T Consensus         4 G~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~-------   72 (327)
T cd05617           4 GRGSYAKVLLVRLKK----NDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLF-------   72 (327)
T ss_pred             eeCCCeEEEEEEECC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEE-------
Confidence            346789999987632    2344555554322111  1112223344444444 6899887665544333222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               ++|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus        73 ---------lv~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~  142 (327)
T cd05617          73 ---------LVIEYVNGGDLMFHMQRQR-KLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGM  142 (327)
T ss_pred             ---------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEecccc
Confidence                     3899999999999997654 477779999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++......                                                                        
T Consensus       143 ~~~~~~~~------------------------------------------------------------------------  150 (327)
T cd05617         143 CKEGLGPG------------------------------------------------------------------------  150 (327)
T ss_pred             ceeccCCC------------------------------------------------------------------------
Confidence            76422000                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcH---
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSE---  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~---  532 (1092)
                                                     ......+||+.|+|||.+.+..++.++|||||||+||||++|..+.   
T Consensus       151 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~  199 (327)
T cd05617         151 -------------------------------DTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDII  199 (327)
T ss_pred             -------------------------------CceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCcc
Confidence                                           0011457899999999999999999999999999999999862221   


Q ss_pred             ------HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC------HHHHhhhhhhhhh
Q 001366          533 ------RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT------TREILQSEVTNEF  588 (1092)
Q Consensus       533 ------~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps------a~eiL~~~~~~~~  588 (1092)
                            .........+..... +.....++.+.+++.+||.+||.+|++      +.+++.||||...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~~  266 (327)
T cd05617         200 TDNPDMNTEDYLFQVILEKPI-RIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSI  266 (327)
T ss_pred             CCCcccccHHHHHHHHHhCCC-CCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCCC
Confidence                  111112222222111 112234688899999999999999998      4699999999764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=1.9e-28  Score=270.15  Aligned_cols=250  Identities=17%  Similarity=0.302  Sum_probs=213.9

Q ss_pred             eeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC-CceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEe
Q 001366          822 AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT-GQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN  900 (1092)
Q Consensus       822 ~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t-g~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWD  900 (1092)
                      ....+|+..|+++.|.|-.+.+|+|++.|+.|+||++.. +.++++|.+|..+|.+++|+. ++..|+|+|.|+.|++||
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeec
Confidence            344579999999999996689999999999999999877 789999999999999999999 999999999999999999


Q ss_pred             cCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCe
Q 001366          901 INEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNK  979 (1092)
Q Consensus       901 l~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~  979 (1092)
                      +++|+++..+.....++|+.|+|++.+.|++|+.|+.|+.||+|+++ .+..+..|-+.|..+.|- .+..+++++.|++
T Consensus       287 tETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks  365 (503)
T KOG0282|consen  287 TETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKS  365 (503)
T ss_pred             cccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence            99999999999999999999999998899999999999999999987 456677899999999998 7779999999999


Q ss_pred             EEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccC
Q 001366          980 LKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDD 1059 (1092)
Q Consensus       980 I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~ 1059 (1092)
                      ++||+.+.....     +.+  ...+.....++..+|+++++++=+.|+.|.||.+...-++.           ......
T Consensus       366 ~riWe~~~~v~i-----k~i--~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n-----------kkK~fe  427 (503)
T KOG0282|consen  366 VRIWENRIPVPI-----KNI--ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN-----------KKKRFE  427 (503)
T ss_pred             EEEEEcCCCccc-----hhh--cchhhccCcceecCCCCCeehhhccCceEEEEecccccccC-----------Hhhhhc
Confidence            999999843211     111  22233345689999999999999999999999865433222           223445


Q ss_pred             CCC--CCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1060 DNG--LFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1060 ~h~--~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +|.  +.-..|.|||||.+|++|++||.+.+|+.
T Consensus       428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdw  461 (503)
T KOG0282|consen  428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDW  461 (503)
T ss_pred             ceeccCceeeEEEcCCCCeEEeecCCccEEEeec
Confidence            554  45678899999999999999999999984

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.96  E-value=1.5e-28  Score=280.02  Aligned_cols=244  Identities=15%  Similarity=0.047  Sum_probs=172.7

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||+|...+.-......++.|+...............+...+....|||++.++.....+.              
T Consensus        17 ~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~--------------   82 (316)
T cd05108          17 SGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST--------------   82 (316)
T ss_pred             cCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCC--------------
Confidence            347899999975321111122244444432222222233445566788889999998665433211              


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                         ...+++|+.+|+|.+++......++...++.++.||+.||+|||++||+||||||+|||++.++.+|++|||+++.+
T Consensus        83 ---~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~  159 (316)
T cd05108          83 ---VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (316)
T ss_pred             ---ceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccc
Confidence               12379999999999999877666888889999999999999999999999999999999999999999999998764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ......                                                                          
T Consensus       160 ~~~~~~--------------------------------------------------------------------------  165 (316)
T cd05108         160 GADEKE--------------------------------------------------------------------------  165 (316)
T ss_pred             cCCCcc--------------------------------------------------------------------------
Confidence            410000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                 .......++..|+|||.+.+..++.++|||||||+||||++ +   |.... .
T Consensus       166 ---------------------------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~-~  217 (316)
T cd05108         166 ---------------------------YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP-A  217 (316)
T ss_pred             ---------------------------eeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC-H
Confidence                                       00001223556999999999999999999999999999986 4   32221 1


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ......+.....++.....+..+..++.+||..+|.+||++.+++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~  264 (316)
T cd05108         218 SEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  264 (316)
T ss_pred             HHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            22222333333334444567889999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.96  E-value=9.7e-29  Score=288.01  Aligned_cols=252  Identities=17%  Similarity=0.113  Sum_probs=178.0

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      +|.+.+.+  +|.|.||++....    .+..++.|+......  .........+..++...+|||++.++.....+...+
T Consensus        44 ~y~i~~~lG~G~fg~Vy~~~~~~----~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~  119 (371)
T cd05622          44 DYEVVKVIGRGAFGEVQLVRHKS----TRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLY  119 (371)
T ss_pred             hcEEEEEEeecCCeEEEEEEECC----CCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEE
Confidence            34444444  3679999887632    344455554321111  111222345566778889999998776654333333


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      ++||||+|++|.++++..  .++...++.++.||+.||+|||++||+||||||+|||++.++.+
T Consensus       120 ----------------lv~Ey~~gg~L~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~i  181 (371)
T cd05622         120 ----------------MVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHL  181 (371)
T ss_pred             ----------------EEEcCCCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCE
Confidence                            389999999999999764  46777899999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.+.....                                                                
T Consensus       182 kL~DfG~a~~~~~~~~----------------------------------------------------------------  197 (371)
T cd05622         182 KLADFGTCMKMNKEGM----------------------------------------------------------------  197 (371)
T ss_pred             EEEeCCceeEcCcCCc----------------------------------------------------------------
Confidence            9999999876431000                                                                


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC----CCCccccchhhhHHHHH
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG----VCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~----~~t~~sDIwSLGvll~e  524 (1092)
                                                            ......+||+.|+|||++.+.    .++.++|||||||+|||
T Consensus       198 --------------------------------------~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilye  239 (371)
T cd05622         198 --------------------------------------VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYE  239 (371)
T ss_pred             --------------------------------------ccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHH
Confidence                                                  000145799999999999763    37899999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhccc--cCCCCCCCCCChhHHHHHHhccccCCCC--CCCHHHHhhhhhhhhh
Q 001366          525 LFGR---FDSERALAAAMSDLRD--RILPPSFLSENPKEAGFCLWQLHPEPLS--RPTTREILQSEVTNEF  588 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~li~~lL~~dP~~--Rpsa~eiL~~~~~~~~  588 (1092)
                      |++|   |...............  ....|.....++.+.+|+.+||..+|.+  |+++.+|++|+||...
T Consensus       240 ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~~~~~~  310 (371)
T cd05622         240 MLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKND  310 (371)
T ss_pred             HHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCcccCCC
Confidence            9986   4443332222222222  1222344456888999999999844433  7899999999999763

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.96  E-value=1.9e-28  Score=273.98  Aligned_cols=253  Identities=18%  Similarity=0.148  Sum_probs=178.3

Q ss_pred             hhHHHhhhc--cccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          212 SEFFVKTTL--KGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       212 ~~~~~~~~~--~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      ..|.+...+  +|.|.||+|...... ......++.|.............-.++...+....|||++.+..........+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            345555555  468999998753311 11123344444322211222233345566778889999998665433222222


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCcccc
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVTFL  353 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHr  353 (1092)
                                      .+|||++|++|.++|....               ..++..+++.++.||+.||.|||++||+||
T Consensus        85 ----------------~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~  148 (283)
T cd05048          85 ----------------MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHR  148 (283)
T ss_pred             ----------------EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeecc
Confidence                            3799999999999997542               346777899999999999999999999999


Q ss_pred             CCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCc
Q 001366          354 DLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSK  433 (1092)
Q Consensus       354 DLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (1092)
                      ||||+||+++.++.+|++|||+++........                                                
T Consensus       149 dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~------------------------------------------------  180 (283)
T cd05048         149 DLAARNCLVGEGLTVKISDFGLSRDIYSADYY------------------------------------------------  180 (283)
T ss_pred             ccccceEEEcCCCcEEECCCcceeeccccccc------------------------------------------------
Confidence            99999999999999999999998754310000                                                


Q ss_pred             cCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccc
Q 001366          434 YGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSS  513 (1092)
Q Consensus       434 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~s  513 (1092)
                                                                           .......+++.|+|||.+.+..++.++
T Consensus       181 -----------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~s  207 (283)
T cd05048         181 -----------------------------------------------------RVQSKSLLPVRWMPPEAILYGKFTTES  207 (283)
T ss_pred             -----------------------------------------------------cccCCCcccccccCHHHhccCcCchhh
Confidence                                                                 000133567789999999988999999


Q ss_pred             cchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          514 NIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       514 DIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |||||||+||||++ +   |..... ...+..+.....++.....++++.+|+.+||..+|.+||++.+|+++
T Consensus       208 Dv~slG~il~el~~~g~~p~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~  279 (283)
T cd05048         208 DIWSFGVVLWEIFSYGLQPYYGFSN-QEVIEMIRSRQLLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTR  279 (283)
T ss_pred             hHHHHHHHHHHHHcCCCCCCCCCCH-HHHHHHHHcCCcCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            99999999999996 4   433222 22333344444444445667899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.95  E-value=2.5e-28  Score=271.27  Aligned_cols=246  Identities=15%  Similarity=0.098  Sum_probs=170.9

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||+|...+    .+..++.|++.... .. ......+..++... .|||++.............   ....    
T Consensus        17 g~~g~vy~~~~~~----~~~~~aik~~~~~~-~~-~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~---~~~~----   83 (272)
T cd06637          17 GTYGQVYKGRHVK----TGQLAAIKVMDVTG-DE-EEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG---MDDQ----   83 (272)
T ss_pred             cCCeEEEEEEEcC----CCcEEEEEEEEcCC-cc-HHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCC---CCcE----
Confidence            4689999997632    24445555543221 11 12223333444444 7999998766543221110   0001    


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                         ...+|||+.+++|.+++... +..+++..++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        84 ---~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~  160 (272)
T cd06637          84 ---LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  160 (272)
T ss_pred             ---EEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCcee
Confidence               11489999999999999763 35678888999999999999999999999999999999999999999999998865


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       161 ~~~~~---------------------------------------------------------------------------  165 (272)
T cd06637         161 LDRTV---------------------------------------------------------------------------  165 (272)
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            33100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----CCCCccccchhhhHHHHHHcCCCCcH-
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----GVCTTSSNIYSLGVLFFELFGRFDSE-  532 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----~~~t~~sDIwSLGvll~ell~~f~~~-  532 (1092)
                                                  .......|+..|+|||++.+     ..++.++|||||||++|||+++..+. 
T Consensus       166 ----------------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~  217 (272)
T cd06637         166 ----------------------------GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLC  217 (272)
T ss_pred             ----------------------------ccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence                                        00013568889999999863     45889999999999999999873322 


Q ss_pred             --HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          533 --RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       533 --~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                        ......................+..+.+|+.+||..+|.+|||+.+++.||||
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~~  272 (272)
T cd06637         218 DMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMKHPFI  272 (272)
T ss_pred             ccCHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhhCCCC
Confidence              22222222222211112223456789999999999999999999999999997

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.95  E-value=1.4e-28  Score=287.03  Aligned_cols=250  Identities=15%  Similarity=0.146  Sum_probs=175.3

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|+||++...    ..+..++.|........ .......++..++...+|||++.+++........           
T Consensus        10 ~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~-----------   74 (372)
T cd07853          10 YGAFGVVWSVTDP----RDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHID-----------   74 (372)
T ss_pred             eCCCEEEEEEEEC----CCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCcc-----------
Confidence            4578999999852    22455565544322111 2234456677788889999999876654422210           


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                      ++....++|+|+. ++|.+++...+ .++..+++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+++.
T Consensus        75 ~~~~~~lv~e~~~-~~l~~~~~~~~-~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~  152 (372)
T cd07853          75 PFEEIYVVTELMQ-SDLHKIIVSPQ-PLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARV  152 (372)
T ss_pred             ccceEEEEeeccc-cCHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceee
Confidence            0111224788876 58998886554 577779999999999999999999999999999999999999999999998865


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       153 ~~~~~---------------------------------------------------------------------------  157 (372)
T cd07853         153 EEPDE---------------------------------------------------------------------------  157 (372)
T ss_pred             cccCc---------------------------------------------------------------------------
Confidence            32100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                 ....+..++|++|+|||.+.+. .++.++|||||||++|||+++   |.....
T Consensus       158 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  210 (372)
T cd07853         158 ---------------------------SKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSP  210 (372)
T ss_pred             ---------------------------cccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCH
Confidence                                       0011134678999999999874 479999999999999999986   433322


Q ss_pred             HHHHHH----------------------hc-cccCCCC-------CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          535 LAAAMS----------------------DL-RDRILPP-------SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       535 ~~~~~~----------------------~~-~~~~~p~-------~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      ......                      .+ .....++       .....++++.+|+.+||++||.+|||+.|+|+|||
T Consensus       211 ~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~  290 (372)
T cd07853         211 IQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPY  290 (372)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcCHh
Confidence            111110                      00 1111111       11234678899999999999999999999999999


Q ss_pred             hhhh
Q 001366          585 TNEF  588 (1092)
Q Consensus       585 ~~~~  588 (1092)
                      |.+.
T Consensus       291 ~~~~  294 (372)
T cd07853         291 LDEG  294 (372)
T ss_pred             hCCC
Confidence            9875

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.5e-28  Score=282.01  Aligned_cols=247  Identities=15%  Similarity=0.110  Sum_probs=175.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|+||++....    .+..++.|+......  ......-..+..++...+||+++.+......+...+         
T Consensus        11 ~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~---------   77 (331)
T cd05597          11 RGAFGEVAVVKMKN----TGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLY---------   77 (331)
T ss_pred             ecCCeEEEEEEECC----CCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEE---------
Confidence            35789999987632    244556655421111  111122233445566778999998766544333333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+|||+.|++|.++|...+..+++.++..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus        78 -------lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  150 (331)
T cd05597          78 -------LVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCL  150 (331)
T ss_pred             -------EEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCcee
Confidence                   3899999999999998766678888999999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+.....                                                                         
T Consensus       151 ~~~~~~~-------------------------------------------------------------------------  157 (331)
T cd05597         151 RLLADGT-------------------------------------------------------------------------  157 (331)
T ss_pred             ecCCCCC-------------------------------------------------------------------------
Confidence            5431000                                                                         


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----CCCCccccchhhhHHHHHHcCC---C
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----GVCTTSSNIYSLGVLFFELFGR---F  529 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----~~~t~~sDIwSLGvll~ell~~---f  529 (1092)
                                                   ......+||+.|+|||++.+     ..++.++|||||||+||||++|   |
T Consensus       158 -----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf  208 (331)
T cd05597         158 -----------------------------VQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPF  208 (331)
T ss_pred             -----------------------------ccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCC
Confidence                                         00012468999999999873     4578899999999999999986   4


Q ss_pred             CcHHHHHHHHHhc---cccCCCCCCCCCChhHHHHHHhccccCCCC--CCCHHHHhhhhhhhhh
Q 001366          530 DSERALAAAMSDL---RDRILPPSFLSENPKEAGFCLWQLHPEPLS--RPTTREILQSEVTNEF  588 (1092)
Q Consensus       530 ~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~li~~lL~~dP~~--Rpsa~eiL~~~~~~~~  588 (1092)
                      .............   ....+|+.....++.+.+|+.+||+.++..  |+++.++++||||...
T Consensus       209 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~hp~~~~~  272 (331)
T cd05597         209 YAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDHPFFEGI  272 (331)
T ss_pred             CCCCHHHHHHHHHcCCCcccCCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCCCCCCC
Confidence            3332222222222   122345555557888999999998764443  7899999999999763

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.1e-28  Score=272.42  Aligned_cols=248  Identities=15%  Similarity=0.191  Sum_probs=182.7

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||+|...+    .+..++.|+...............+...++..+|||++........+...+   
T Consensus         3 y~~~~~lg~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~---   75 (274)
T cd06609           3 FTLLECIGKGSFGEVYKAIDKR----TNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLW---   75 (274)
T ss_pred             hhhhhhhcCCCCeEEEEEEECC----CCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEE---
Confidence            4444444  5789999998632    345566666543322222233345566778888999988665544332222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   +++||+.|++|.+++...  .++...++.++.||+.||.|||++||+||||+|+||+++.++.++++
T Consensus        76 -------------~v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~  140 (274)
T cd06609          76 -------------IIMEYCGGGSCLDLLKPG--KLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLA  140 (274)
T ss_pred             -------------EEEEeeCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEc
Confidence                         379999999999999765  67788999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.+....                                                                    
T Consensus       141 d~g~~~~~~~~~--------------------------------------------------------------------  152 (274)
T cd06609         141 DFGVSGQLTSTM--------------------------------------------------------------------  152 (274)
T ss_pred             ccccceeecccc--------------------------------------------------------------------
Confidence            999987754100                                                                    


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                         .......|++.|+|||.+.+..++.++|||||||++|||+++   
T Consensus       153 -----------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p  197 (274)
T cd06609         153 -----------------------------------SKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPP  197 (274)
T ss_pred             -----------------------------------cccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence                                               000134578889999999998899999999999999999997   


Q ss_pred             CCcHHHHHHHHHhccccCCCCCCC-C-CChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 FDSERALAAAMSDLRDRILPPSFL-S-ENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~p~~~~-~-~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |.......... .+.... ++... . .++.+.+++.+||+.+|++||+++++++||||...
T Consensus       198 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~~~~~~~  257 (274)
T cd06609         198 LSDLHPMRVLF-LIPKNN-PPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLKHKFIKKA  257 (274)
T ss_pred             cccCchHHHHH-HhhhcC-CCCCcccccCHHHHHHHHHHhhCChhhCcCHHHHhhChhhcCC
Confidence            33222222221 122222 22222 2 46789999999999999999999999999999764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.95  E-value=1.3e-28  Score=281.58  Aligned_cols=244  Identities=17%  Similarity=0.171  Sum_probs=171.3

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCC-CCCCCccccceecCCCCCCCccCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNA-SPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ..++.|.||++...    ..+..++.|+......  .........+..++.... +++++.+......+...+       
T Consensus         9 g~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~-------   77 (323)
T cd05615           9 GKGSFGKVMLAERK----GTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLY-------   77 (323)
T ss_pred             EecCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEE-------
Confidence            34578999998763    2345566665432111  112222333344444444 455554444333222222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               .+|||++|++|.+++...+ .+++.+++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus        78 ---------lv~Ey~~~g~L~~~i~~~~-~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~  147 (323)
T cd05615          78 ---------FVMEYVNGGDLMYHIQQVG-KFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGM  147 (323)
T ss_pred             ---------EEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEecccc
Confidence                     3899999999999997665 477779999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++......                                                                        
T Consensus       148 ~~~~~~~~------------------------------------------------------------------------  155 (323)
T cd05615         148 CKEHMVDG------------------------------------------------------------------------  155 (323)
T ss_pred             ccccCCCC------------------------------------------------------------------------
Confidence            86532000                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                     .......||+.|+|||++.+..++.++|||||||+||||+++   |...
T Consensus       156 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~  204 (323)
T cd05615         156 -------------------------------VTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGE  204 (323)
T ss_pred             -------------------------------ccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCC
Confidence                                           000134689999999999998999999999999999999986   4433


Q ss_pred             HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          533 RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      ................|  ...++.+.+|+.+||+++|.+|++     ..++++||||...
T Consensus       205 ~~~~~~~~i~~~~~~~p--~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~  263 (323)
T cd05615         205 DEDELFQSIMEHNVSYP--KSLSKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRI  263 (323)
T ss_pred             CHHHHHHHHHhCCCCCC--ccCCHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccCCC
Confidence            33222222222222111  234788899999999999999997     4799999999763

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=1.5e-28  Score=288.72  Aligned_cols=249  Identities=13%  Similarity=0.092  Sum_probs=172.6

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ++.|.||++...+.  ..+..++.|+....      ....++..++...+|||++.++.....+...+   
T Consensus        94 y~i~~~Lg~G~~g~Vy~~~~~~~--~~~~~v~vK~~~~~------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~---  162 (392)
T PHA03207         94 YNILSSLTPGSEGEVFVCTKHGD--EQRKKVIVKAVTGG------KTPGREIDILKTISHRAIINLIHAYRWKSTVC---  162 (392)
T ss_pred             eEEEEeecCCCCeEEEEEEEcCC--ccceeEEEEecccc------ccHHHHHHHHHhcCCCCccceeeeEeeCCEEE---
Confidence            5554444  46799998864321  11233344333221      12234666778889999998776544333222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+|+++. ++|.+++... ..++..+++.|+.||+.||+|||++||+||||||+|||++..+.+||+
T Consensus       163 -------------lv~e~~~-~~l~~~l~~~-~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~  227 (392)
T PHA03207        163 -------------MVMPKYK-CDLFTYVDRS-GPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLG  227 (392)
T ss_pred             -------------EEehhcC-CCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEc
Confidence                         2677775 6899999544 457888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.+.....                                                                   
T Consensus       228 DfG~a~~~~~~~~-------------------------------------------------------------------  240 (392)
T PHA03207        228 DFGAACKLDAHPD-------------------------------------------------------------------  240 (392)
T ss_pred             cCccccccCcccc-------------------------------------------------------------------
Confidence            9999876431000                                                                   


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                        ........||+.|+|||++.+..++.++|||||||+||||+++   
T Consensus       241 ----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~p  286 (392)
T PHA03207        241 ----------------------------------TPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVT  286 (392)
T ss_pred             ----------------------------------cccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCC
Confidence                                              0001145789999999999999999999999999999999975   


Q ss_pred             CCcH------HHHHHHHHhcc----------------------ccCC----CCCC---CCCChhHHHHHHhccccCCCCC
Q 001366          529 FDSE------RALAAAMSDLR----------------------DRIL----PPSF---LSENPKEAGFCLWQLHPEPLSR  573 (1092)
Q Consensus       529 f~~~------~~~~~~~~~~~----------------------~~~~----p~~~---~~~~~~~~~li~~lL~~dP~~R  573 (1092)
                      |.+.      .........+.                      ....    ++..   ...+..+.+||.+||++||.+|
T Consensus       287 f~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R  366 (392)
T PHA03207        287 LFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFR  366 (392)
T ss_pred             CCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhC
Confidence            3221      11111111110                      0000    0111   1234567899999999999999


Q ss_pred             CCHHHHhhhhhhhhhh
Q 001366          574 PTTREILQSEVTNEFQ  589 (1092)
Q Consensus       574 psa~eiL~~~~~~~~~  589 (1092)
                      ||+.|+|.||||...+
T Consensus       367 psa~e~l~~p~f~~~~  382 (392)
T PHA03207        367 PSAQDILSLPLFTKEP  382 (392)
T ss_pred             CCHHHHhhCchhhccc
Confidence            9999999999997643

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=2.2e-29  Score=305.81  Aligned_cols=251  Identities=16%  Similarity=0.135  Sum_probs=190.5

Q ss_pred             ccceeeeCCCCCccccccccccc-cccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDT-KAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      =+|-||-+...|    .|+..|. +|+...........-..+.+.+...+|||++..+..-+++...+            
T Consensus      1247 ~fG~VYtavN~~----tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~------------ 1310 (1509)
T KOG4645|consen 1247 TFGKVYTAVNLD----TGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVY------------ 1310 (1509)
T ss_pred             ceeeeEEeecCC----ccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHH------------
Confidence            378999888754    3333333 44433222222233345556677889999998766666555555            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          +.||||+||+|.+++...+ ..++--...+..|++.||.|||++|||||||||+||+|+.+|.+||.|||.|..+.
T Consensus      1311 ----IFMEyC~~GsLa~ll~~gr-i~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~ 1385 (1509)
T KOG4645|consen 1311 ----IFMEYCEGGSLASLLEHGR-IEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIK 1385 (1509)
T ss_pred             ----HHHHHhccCcHHHHHHhcc-hhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEec
Confidence                3799999999999987553 45554667788999999999999999999999999999999999999999998865


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      .+.                                                                             
T Consensus      1386 ~~~----------------------------------------------------------------------------- 1388 (1509)
T KOG4645|consen 1386 NNA----------------------------------------------------------------------------- 1388 (1509)
T ss_pred             Cch-----------------------------------------------------------------------------
Confidence            210                                                                             


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC---CCccccchhhhHHHHHHcCCCCcHH---H
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV---CTTSSNIYSLGVLFFELFGRFDSER---A  534 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~---~t~~sDIwSLGvll~ell~~f~~~~---~  534 (1092)
                                            |.-...+...+||+.|||||++.+..   -..++|||||||+..||+||-.++.   .
T Consensus      1389 ----------------------~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dn 1446 (1509)
T KOG4645|consen 1389 ----------------------QTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDN 1446 (1509)
T ss_pred             ----------------------hcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccc
Confidence                                  00113345789999999999999833   4679999999999999999855543   3


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhccc
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                      ..+.|..+.....|+.....+++-.+||..||..||+.|.++.|||+|-|-....+.+
T Consensus      1447 e~aIMy~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle~~f~~~~~d~~ 1504 (1509)
T KOG4645|consen 1447 EWAIMYHVAAGHKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLEHAFGKSCTDED 1504 (1509)
T ss_pred             hhHHHhHHhccCCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHHhhccccccccc
Confidence            4566666666666666666899999999999999999999999999999877654443

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.95  E-value=2.2e-28  Score=285.37  Aligned_cols=253  Identities=13%  Similarity=0.113  Sum_probs=174.1

Q ss_pred             hHHHhhhcc--ccceeeeCCCCC-ccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLN-AFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  288 (1092)
                      +|.+.+.++  |.|+||++.... +-......++.|+..............++..++... .|||++.++.........+
T Consensus        39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~  118 (374)
T cd05106          39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVL  118 (374)
T ss_pred             HceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeE
Confidence            455555554  689999876310 001112345555553332222233344566677776 8999998776644333332


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------------------------------------
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------------------------------------  323 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------------------------------------  323 (1092)
                                      .+||||.||+|.++|....                                             
T Consensus       119 ----------------lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (374)
T cd05106         119 ----------------VITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYV  182 (374)
T ss_pred             ----------------EeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhccccccccccccccccccc
Confidence                            3899999999999995431                                             


Q ss_pred             ------------------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          324 ------------------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       324 ------------------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                                              ..++..+++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||+++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~  262 (374)
T cd05106         183 EMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDI  262 (374)
T ss_pred             ccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeec
Confidence                                    13566678999999999999999999999999999999999999999999998764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      .....                                                                           
T Consensus       263 ~~~~~---------------------------------------------------------------------------  267 (374)
T cd05106         263 MNDSN---------------------------------------------------------------------------  267 (374)
T ss_pred             cCCcc---------------------------------------------------------------------------
Confidence            31000                                                                           


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                ........++..|||||++.+..++.++|||||||+||||++ +   |......
T Consensus       268 --------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~  321 (374)
T cd05106         268 --------------------------YVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVN  321 (374)
T ss_pred             --------------------------eeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcccccc
Confidence                                      000001234567999999998899999999999999999985 4   4333222


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ......+.....++.....++++.+++.+||+.||.+||++.+|++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~  368 (374)
T cd05106         322 SKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQL  368 (374)
T ss_pred             HHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            22222233222222222346889999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>PTZ00284 protein kinase; Provisional

Probab=99.95  E-value=6.5e-29  Score=298.42  Aligned_cols=176  Identities=21%  Similarity=0.274  Sum_probs=130.6

Q ss_pred             ccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCC----------------cE
Q 001366          306 QGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSN----------------QV  368 (1092)
Q Consensus       306 ~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~----------------~v  368 (1092)
                      +|+++ |++|.++|...+ .++..+++.|+.||+.||+|||+ .|||||||||+|||++..+                .+
T Consensus       210 v~~~~-g~~l~~~l~~~~-~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~v  287 (467)
T PTZ00284        210 VMPKY-GPCLLDWIMKHG-PFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRV  287 (467)
T ss_pred             EEecc-CCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceE
Confidence            55555 889999997664 46777999999999999999998 5999999999999998765                37


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||++....                                                                    
T Consensus       288 kl~DfG~~~~~~--------------------------------------------------------------------  299 (467)
T PTZ00284        288 RICDLGGCCDER--------------------------------------------------------------------  299 (467)
T ss_pred             EECCCCccccCc--------------------------------------------------------------------
Confidence            777777543211                                                                    


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                            ...+..+||++|+|||++.+..|+.++|||||||+||||++|
T Consensus       300 --------------------------------------~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG  341 (467)
T PTZ00284        300 --------------------------------------HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTG  341 (467)
T ss_pred             --------------------------------------cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhC
Confidence                                                  001145789999999999999999999999999999999996


Q ss_pred             ---CCcHHHHHHH--HHhccccC----------------------CCCC----------------CCCCChhHHHHHHhc
Q 001366          529 ---FDSERALAAA--MSDLRDRI----------------------LPPS----------------FLSENPKEAGFCLWQ  565 (1092)
Q Consensus       529 ---f~~~~~~~~~--~~~~~~~~----------------------~p~~----------------~~~~~~~~~~li~~l  565 (1092)
                         |.+.......  +.......                      +.+.                .....+.+.+||.+|
T Consensus       342 ~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~m  421 (467)
T PTZ00284        342 KLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGL  421 (467)
T ss_pred             CCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHh
Confidence               5433222111  11110000                      0000                001235577999999


Q ss_pred             cccCCCCCCCHHHHhhhhhhhhhh
Q 001366          566 LHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       566 L~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      |++||.+|||++|+|+||||....
T Consensus       422 L~~dP~~R~ta~e~L~Hp~~~~~~  445 (467)
T PTZ00284        422 LHYDRQKRLNARQMTTHPYVLKYY  445 (467)
T ss_pred             CCcChhhCCCHHHHhcCccccccC
Confidence            999999999999999999998743

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.95  E-value=1.3e-28  Score=282.63  Aligned_cols=247  Identities=14%  Similarity=0.091  Sum_probs=174.0

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC-ch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++...+    .+..++.|+...... .. ....-..+..++....|++++.+......+...+         
T Consensus        11 ~G~fg~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~---------   77 (332)
T cd05623          11 RGAFGEVAVVKLKN----ADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLY---------   77 (332)
T ss_pred             eCCCeEEEEEEECC----CCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEE---------
Confidence            34679999987633    233444444321111 11 1111223344566778999887665544333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||+.||+|.++|......++...++.++.||+.||+|||++||+||||||+|||++.++.+|++|||+++
T Consensus        78 -------lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~  150 (332)
T cd05623          78 -------LVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCL  150 (332)
T ss_pred             -------EEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchhe
Confidence                   3899999999999998755567888899999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       151 ~~~~~~--------------------------------------------------------------------------  156 (332)
T cd05623         151 KLMEDG--------------------------------------------------------------------------  156 (332)
T ss_pred             ecccCC--------------------------------------------------------------------------
Confidence            533100                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----CCCCccccchhhhHHHHHHcCC---C
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----GVCTTSSNIYSLGVLFFELFGR---F  529 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----~~~t~~sDIwSLGvll~ell~~---f  529 (1092)
                                                  .......+||+.|+|||++.+     ..++.++|||||||+||||++|   |
T Consensus       157 ----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf  208 (332)
T cd05623         157 ----------------------------TVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPF  208 (332)
T ss_pred             ----------------------------cceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCC
Confidence                                        000013578999999999863     4689999999999999999986   4


Q ss_pred             CcHHHHHHHHHhccc---cCCCCCCCCCChhHHHHHHhccccCCCC--CCCHHHHhhhhhhhhh
Q 001366          530 DSERALAAAMSDLRD---RILPPSFLSENPKEAGFCLWQLHPEPLS--RPTTREILQSEVTNEF  588 (1092)
Q Consensus       530 ~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~li~~lL~~dP~~--Rpsa~eiL~~~~~~~~  588 (1092)
                      ...............   ...|......++.+.+|+.+||..+|..  |+++.++++||||...
T Consensus       209 ~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h~~f~~~  272 (332)
T cd05623         209 YAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTGI  272 (332)
T ss_pred             CCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCCCCcCCC
Confidence            433332222222222   2234445567888999999999765544  6899999999999764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.95  E-value=3.2e-28  Score=269.75  Aligned_cols=247  Identities=17%  Similarity=0.197  Sum_probs=176.7

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.+  +|.|.||++....    .+..++.|+..... .........+..++...+|||++........+...+  
T Consensus        10 ~~~~~~~lg~g~~~~v~~~~~~~----~~~~~~ik~~~~~~-~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~--   82 (267)
T cd06645          10 DFELIQRIGSGTYGDVYKARNVN----TGELAAIKVIKLEP-GEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLW--   82 (267)
T ss_pred             HHHHHHHhCCCCCeEEEEEEEcC----CCcEEEEEEEecCc-hhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEE--
Confidence            45555555  4789999997632    23445554432221 122223344556677889999998777655433333  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    .+|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+|+||||+||+++.++.+|+
T Consensus        83 --------------lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l  147 (267)
T cd06645          83 --------------ICMEFCGGGSLQDIYHVTG-PLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKL  147 (267)
T ss_pred             --------------EEEeccCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEE
Confidence                          3899999999999997665 4677799999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||++.......                                                                   
T Consensus       148 ~dfg~~~~~~~~~-------------------------------------------------------------------  160 (267)
T cd06645         148 ADFGVSAQITATI-------------------------------------------------------------------  160 (267)
T ss_pred             CcceeeeEccCcc-------------------------------------------------------------------
Confidence            9999876533100                                                                   


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc---CCCCCccccchhhhHHHHHHcC
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS---GGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~---~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                          .......|+..|+|||.+.   ...++.++|||||||++|||++
T Consensus       161 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~  204 (267)
T cd06645         161 ------------------------------------AKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAE  204 (267)
T ss_pred             ------------------------------------cccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhc
Confidence                                                0001346888999999985   4568899999999999999998


Q ss_pred             CCCc---HHHHHHHHHhccccCCCCCC---CCCChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          528 RFDS---ERALAAAMSDLRDRILPPSF---LSENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       528 ~f~~---~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      +..+   ................++.+   ...++.+.+|+.+||.++|++||++.+|++|||
T Consensus       205 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~~~  267 (267)
T cd06645         205 LQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQHPF  267 (267)
T ss_pred             CCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHHHHhcCCC
Confidence            6222   22222222222222222222   234577899999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.7e-28  Score=275.29  Aligned_cols=244  Identities=16%  Similarity=0.168  Sum_probs=177.1

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++....    .+..++.|+........  ......++..+++...||+++........+...+         
T Consensus        10 ~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~---------   76 (285)
T cd05605          10 KGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALC---------   76 (285)
T ss_pred             cCCCeEEEEEEEcC----CCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEE---------
Confidence            45679999987532    24555655442221111  1122344667788889999997655543332222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                             ++|||++|++|.+++.... ..++..++..++.||+.||.|||++||+||||||+||+++.++.++++|||++
T Consensus        77 -------lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~  149 (285)
T cd05605          77 -------LVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLA  149 (285)
T ss_pred             -------EEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCc
Confidence                   3899999999999986543 45788899999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       150 ~~~~~~--------------------------------------------------------------------------  155 (285)
T cd05605         150 VEIPEG--------------------------------------------------------------------------  155 (285)
T ss_pred             eecCCC--------------------------------------------------------------------------
Confidence            653200                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    ......+|+..|+|||++.+..++.++|||||||++|||+++   |.+..
T Consensus       156 ------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~  205 (285)
T cd05605         156 ------------------------------ETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRK  205 (285)
T ss_pred             ------------------------------CccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCc
Confidence                                          000134688999999999998899999999999999999986   44322


Q ss_pred             HH---HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          534 AL---AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       534 ~~---~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      ..   ......+... .+......++.+.+|+.+||+.||.+||     ++.++++||||...
T Consensus       206 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~  267 (285)
T cd05605         206 EKVKREEVERRVKED-QEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTA  267 (285)
T ss_pred             hhhHHHHHHHHhhhc-ccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcCcCccCC
Confidence            21   1222222211 1122234578889999999999999999     89999999999863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.95  E-value=2.6e-28  Score=279.55  Aligned_cols=251  Identities=15%  Similarity=0.148  Sum_probs=172.5

Q ss_pred             ccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      |.|.||++...    ..++.++.|..-... ..........+..+++..+|||++.++.....+...+            
T Consensus        12 ~~~~v~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~------------   75 (327)
T cd08227          12 DLMTVNLARYK----PTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW------------   75 (327)
T ss_pred             ceEEEEEEeec----ccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEE------------
Confidence            46789998873    235556665542221 1122233444566777889999998776655443333            


Q ss_pred             cCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                          .+|||+++++|.+++... ...+++..++.++.||+.||+|||++||+||||||+|||++.++.++++||+.....
T Consensus        76 ----lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~  151 (327)
T cd08227          76 ----VVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSM  151 (327)
T ss_pred             ----EEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhcc
Confidence                389999999999999653 334778899999999999999999999999999999999999999999999765432


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ......           .+.                                              +.++          
T Consensus       152 ~~~~~~-----------~~~----------------------------------------------~~~~----------  164 (327)
T cd08227         152 INHGQR-----------LRV----------------------------------------------VHDF----------  164 (327)
T ss_pred             cccccc-----------ccc----------------------------------------------cccc----------
Confidence            210000           000                                              0000          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC--CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG--GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~--~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                   -....++..|+|||++.+  ..++.++|||||||++|||+++   |.....
T Consensus       165 -----------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  215 (327)
T cd08227         165 -----------------------------PKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPA  215 (327)
T ss_pred             -----------------------------cccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcch
Confidence                                         002246677999999976  4589999999999999999986   332221


Q ss_pred             HHHHHHhccccC--------C------------------------------------CCCCCCCChhHHHHHHhccccCC
Q 001366          535 LAAAMSDLRDRI--------L------------------------------------PPSFLSENPKEAGFCLWQLHPEP  570 (1092)
Q Consensus       535 ~~~~~~~~~~~~--------~------------------------------------p~~~~~~~~~~~~li~~lL~~dP  570 (1092)
                      ............        .                                    .+.....++.+.+|+.+||++||
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP  295 (327)
T cd08227         216 TQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNP  295 (327)
T ss_pred             hHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCc
Confidence            111111111100        0                                    00111235678899999999999


Q ss_pred             CCCCCHHHHhhhhhhhhh
Q 001366          571 LSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       571 ~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ++|||++++|+||||...
T Consensus       296 ~~Rpt~~ell~~p~f~~~  313 (327)
T cd08227         296 DARPSASTLLNHSFFKQI  313 (327)
T ss_pred             hhcCCHHHHhcChhhhhc
Confidence            999999999999999764

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.95  E-value=5.1e-28  Score=270.66  Aligned_cols=250  Identities=13%  Similarity=0.073  Sum_probs=178.5

Q ss_pred             HHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCcc
Q 001366          215 FVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGAR  292 (1092)
Q Consensus       215 ~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (1092)
                      .+.+.+  +|.|.||+|....    .+..++.+.....+ .........+...+....|||++.+......+...+    
T Consensus         8 ~i~~~lg~g~~g~v~~~~~~~----~~~~~~~k~~~~~~-~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~----   78 (282)
T cd06643           8 EIIGELGDGAFGKVYKAQNKE----TGVLAAAKVIDTKS-EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLW----   78 (282)
T ss_pred             HHHhhcccCCCeEEEEEEECC----CCeEEEEEEeCCCC-HHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEE----
Confidence            444444  4689999998632    23333443332111 122233344556777889999998766544332222    


Q ss_pred             CCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEec
Q 001366          293 TGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIG  372 (1092)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~D  372 (1092)
                                  .+|||+.|++|.+++......++...++.++.||+.||.|||+.||+||||||+||+++.++.+|++|
T Consensus        79 ------------~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~d  146 (282)
T cd06643          79 ------------ILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLAD  146 (282)
T ss_pred             ------------EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEcc
Confidence                        48999999999999876555688889999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||+++......                                                                     
T Consensus       147 fg~~~~~~~~~---------------------------------------------------------------------  157 (282)
T cd06643         147 FGVSAKNTRTI---------------------------------------------------------------------  157 (282)
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            99876532100                                                                     


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-----CCCCCccccchhhhHHHHHHcC
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-----GGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-----~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                        .......||..|+|||.+.     +..++.++|||||||++|||++
T Consensus       158 ----------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~  203 (282)
T cd06643         158 ----------------------------------QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQ  203 (282)
T ss_pred             ----------------------------------cccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHcc
Confidence                                              0001345788899999984     3557889999999999999998


Q ss_pred             C---CCcHHHHHHHHHhccccC-CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          528 R---FDSERALAAAMSDLRDRI-LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +   |................. ..+.....+..+.+|+.+||+++|.+||++.++++||||...
T Consensus       204 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  268 (282)
T cd06643         204 IEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHPFVTVN  268 (282)
T ss_pred             CCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCCCEecc
Confidence            5   433333333333322221 112223456789999999999999999999999999999764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.95  E-value=5.8e-28  Score=277.85  Aligned_cols=254  Identities=15%  Similarity=0.138  Sum_probs=176.4

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  288 (1092)
                      +|.+.+.++  |.|+||++...+. -...+..++.|++.............++..++... .|||++.++..........
T Consensus         8 ~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~   87 (337)
T cd05054           8 RLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPL   87 (337)
T ss_pred             HhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCE
Confidence            566665554  7899999975321 11123456666554332333333445566666666 7899998766533211111


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------------------------------------
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------------------------------------  323 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------------------------------------  323 (1092)
                                     ..+|+|+.|++|.++|....                                             
T Consensus        88 ---------------~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (337)
T cd05054          88 ---------------MVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKS  152 (337)
T ss_pred             ---------------EEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcc
Confidence                           13799999999999996432                                             


Q ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCC
Q 001366          324 ---------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIP  388 (1092)
Q Consensus       324 ---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~  388 (1092)
                                     ..++...+..++.||+.||+|||++||+||||||+||+++.++.+|++|||+++.+......   
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~---  229 (337)
T cd05054         153 LSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY---  229 (337)
T ss_pred             hhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcch---
Confidence                           14677789999999999999999999999999999999999999999999998765310000   


Q ss_pred             CCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCC
Q 001366          389 HSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFG  468 (1092)
Q Consensus       389 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  468 (1092)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (337)
T cd05054         230 --------------------------------------------------------------------------------  229 (337)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccc
Q 001366          469 NYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRD  544 (1092)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~  544 (1092)
                                        .......++..|+|||++.+..++.++|||||||+||||++ +   |............+..
T Consensus       230 ------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~  291 (337)
T cd05054         230 ------------------VRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKE  291 (337)
T ss_pred             ------------------hhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhc
Confidence                              00002344567999999999999999999999999999996 4   4322211222222222


Q ss_pred             cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          545 RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       545 ~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ...+.......+++.+++.+||+.+|++||++.||+++
T Consensus       292 ~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~  329 (337)
T cd05054         292 GTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEI  329 (337)
T ss_pred             cCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            22222233457889999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.95  E-value=4.2e-28  Score=283.10  Aligned_cols=253  Identities=13%  Similarity=0.101  Sum_probs=172.5

Q ss_pred             hHHHhhhc--cccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.+  +|.|.||++..--. ....+..++.|+..............++..++... .|||++.++.........+
T Consensus        36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~  115 (375)
T cd05104          36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTL  115 (375)
T ss_pred             HeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcce
Confidence            35555544  46899998852100 01113345555543222222223344566667666 8999998776544333322


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------------------------------------
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------------------------------------  323 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------------------------------------  323 (1092)
                                      .+||||.||+|.++|....                                             
T Consensus       116 ----------------lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  179 (375)
T cd05104         116 ----------------VITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVV  179 (375)
T ss_pred             ----------------eeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccc
Confidence                            3899999999999996532                                             


Q ss_pred             -----------------------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          324 -----------------------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       324 -----------------------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                                                   ..++...++.++.||+.||.|||++||+||||||+|||++.++.+|++|||
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG  259 (375)
T cd05104         180 PTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFG  259 (375)
T ss_pred             ccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCc
Confidence                                         135667889999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++........                                                                     
T Consensus       260 ~a~~~~~~~~~---------------------------------------------------------------------  270 (375)
T cd05104         260 LARDIRNDSNY---------------------------------------------------------------------  270 (375)
T ss_pred             cceeccCcccc---------------------------------------------------------------------
Confidence            98764310000                                                                     


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CC
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FD  530 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~  530 (1092)
                                                      .......++..|+|||.+.+..++.++|||||||+||||++ +   |.
T Consensus       271 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~  318 (375)
T cd05104         271 --------------------------------VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYP  318 (375)
T ss_pred             --------------------------------cccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCC
Confidence                                            00001234566999999999999999999999999999996 3   43


Q ss_pred             cHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          531 SERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       531 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ...........+.....+......++++.+|+.+||++||++||++.+|++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~  370 (375)
T cd05104         319 GMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQL  370 (375)
T ss_pred             CCCchHHHHHHHHhCccCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence            3222222223333222222222346788999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.1e-26  Score=266.27  Aligned_cols=283  Identities=20%  Similarity=0.289  Sum_probs=243.9

Q ss_pred             eeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          773 GEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       773 ~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      -.+.+|.+.|.+++|+.+...+++|+ .+.|+||+..+.        .....+. ...+.|.+|-|. +.++++|...|.
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~--------kciRTi~-~~y~l~~~Fvpg-d~~Iv~G~k~Ge  435 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL--------KCIRTIT-CGYILASKFVPG-DRYIVLGTKNGE  435 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc--------ceeEEec-cccEEEEEecCC-CceEEEeccCCc
Confidence            35679999999999999988888875 568999998751        1112222 348899999996 889999999999


Q ss_pred             EEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCC-----Cc--e------eeeEecCCceEEE
Q 001366          853 VKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE-----KN--S------LATIKNIANVCCV  919 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~-----~~--~------l~~l~~~~~V~sl  919 (1092)
                      +.++|+.+...+.+..+|.+.||+++.+| ++..+++||.|.+|++||..-     +.  .      ..++.....|.|+
T Consensus       436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v  514 (888)
T KOG0306|consen  436 LQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCV  514 (888)
T ss_pred             eEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEE
Confidence            99999999998888899999999999999 889999999999999999852     11  1      1344456789999


Q ss_pred             EEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCce
Q 001366          920 QFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNAC  998 (1092)
Q Consensus       920 ~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~  998 (1092)
                      .++||+. +||++--|++|+||=+.+.+- .-.+-||.=+|.|+..+ ++..++|||.|..|+||-+.        .+.|
T Consensus       515 ~~Spdgk-~LaVsLLdnTVkVyflDtlKF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd--------FGDC  584 (888)
T KOG0306|consen  515 SVSPDGK-LLAVSLLDNTVKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD--------FGDC  584 (888)
T ss_pred             EEcCCCc-EEEEEeccCeEEEEEecceee-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccc--------cchh
Confidence            9999995 999999999999999988753 45678999999999999 77899999999999999998        6889


Q ss_pred             eEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEE
Q 001366          999 SLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVV 1078 (1092)
Q Consensus       999 ~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~La 1078 (1092)
                      .+++.+|...|.+|.|-|...++.++|.|+.|+-||-..-..++.              ..+|...|++++.+|+|.+++
T Consensus       585 HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~--------------L~~H~~ev~cLav~~~G~~vv  650 (888)
T KOG0306|consen  585 HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK--------------LDGHHSEVWCLAVSPNGSFVV  650 (888)
T ss_pred             hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhee--------------eccchheeeeeEEcCCCCeEE
Confidence            999999999999999999999999999999999998665554443              357888999999999999999


Q ss_pred             EEecCCeEEEEEc
Q 001366         1079 AANSSGCIKVLQM 1091 (1092)
Q Consensus      1079 sgs~DG~V~vW~l 1091 (1092)
                      ++|.|.+|++|+.
T Consensus       651 s~shD~sIRlwE~  663 (888)
T KOG0306|consen  651 SSSHDKSIRLWER  663 (888)
T ss_pred             eccCCceeEeeec
Confidence            9999999999974

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=3.6e-28  Score=268.35  Aligned_cols=251  Identities=16%  Similarity=0.137  Sum_probs=179.1

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch----hhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS----DAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      |.+.+.++  +.|.||++...+    .+..++.|.........    ......++...+...+|||++.++.....+...
T Consensus         4 ~~~~~~lg~g~~~~vy~~~~~~----~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   79 (263)
T cd06625           4 WRRGKLLGQGAFGRVYLCYDVD----TGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETL   79 (263)
T ss_pred             ccccceecCCCceEEEEEEEcC----CCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeE
Confidence            34444443  579999987522    23444444432211111    112234455677888999999876665443322


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      +                .++||+.|++|.+++...+ .++...++.++.||+.||.|||++||+||||||+||+++.++.
T Consensus        80 ~----------------~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~  142 (263)
T cd06625          80 S----------------IFMEYMPGGSVKDQLKAYG-ALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGN  142 (263)
T ss_pred             E----------------EEEEECCCCcHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCC
Confidence            2                3799999999999997654 4677789999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      ++++|||+++.......                                                               
T Consensus       143 ~~l~dfg~~~~~~~~~~---------------------------------------------------------------  159 (263)
T cd06625         143 VKLGDFGASKRLQTICS---------------------------------------------------------------  159 (263)
T ss_pred             EEEeecccceecccccc---------------------------------------------------------------
Confidence            99999998865431000                                                               


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                           .........|+.+|+|||.+.+..++.++|||||||++|||++
T Consensus       160 -------------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~  202 (263)
T cd06625         160 -------------------------------------SGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLT  202 (263)
T ss_pred             -------------------------------------ccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHh
Confidence                                                 0000013457788999999999889999999999999999999


Q ss_pred             C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          528 R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      +   |..................++.....++.+.+|+.+||..+|.+||++.++|+|+||
T Consensus       203 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  263 (263)
T cd06625         203 EKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRHFFV  263 (263)
T ss_pred             CCCCccccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhCCCC
Confidence            6   333333333333333323333334557889999999999999999999999999997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.7e-27  Score=274.80  Aligned_cols=252  Identities=19%  Similarity=0.308  Sum_probs=205.7

Q ss_pred             Eeeeec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------------------------CCC--------
Q 001366          771 RTGEFN-NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNAL---------------------------FND--------  814 (1092)
Q Consensus       771 ~~~~l~-~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~---------------------------~~~--------  814 (1092)
                      ....+. .|.+.|.++.|++||+|||+||.|+.|+||.+...                           ...        
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            334566 89999999999999999999999999999987540                           000        


Q ss_pred             ----Cc---c----------cccc-eeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEE
Q 001366          815 ----SV---D----------VYYP-AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWS  876 (1092)
Q Consensus       815 ----~~---~----------~~~~-~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~s  876 (1092)
                          ..   .          ...| ....+|.+.|.++.|+.  .++|+|+|.|+|||||++....|++.|. |.+-|+|
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc  414 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC  414 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence                00   0          0111 23467999999999998  5899999999999999999999999996 9999999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEE-e--
Q 001366          877 VDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV-L--  953 (1092)
Q Consensus       877 v~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~-l--  953 (1092)
                      |+|+|.|.++|+|||-||.|+||++...+.+.-.....-|++++|.|+|. ..+.|+.+|.+++|+++..+..... +  
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence            99999999999999999999999999888777777788999999999985 8999999999999999876431111 0  


Q ss_pred             -----cCCCCCeEEEEEcCC--CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCC--eEEEEEecCCCEEEEE
Q 001366          954 -----AGHEKAVSYVKFLDS--GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNE--KNFVGLSTADGYIACG 1024 (1092)
Q Consensus       954 -----~~H~~~V~~v~fs~~--~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~--V~~v~~spdg~~lasg 1024 (1092)
                           ..|. .|+.+.|.++  ..++..+.|..|+|+|.++        ...+..|+|+.+.  -....|+.||++|+||
T Consensus       494 ~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--------~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  494 HNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--------KDLVHKFKGFRNTSSQISASFSSDGKHIVSA  564 (712)
T ss_pred             ccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc--------hhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence                 1233 7999999733  4588888999999999973        3456677765443  3456899999999999


Q ss_pred             ecCCcEEEEeC
Q 001366         1025 SESNEVYAYHR 1035 (1092)
Q Consensus      1025 s~Dg~I~Iwd~ 1035 (1092)
                      ++|..|+||+.
T Consensus       565 seDs~VYiW~~  575 (712)
T KOG0283|consen  565 SEDSWVYIWKN  575 (712)
T ss_pred             ecCceEEEEeC
Confidence            99999999996

>PHA02988 hypothetical protein; Provisional

Probab=99.95  E-value=3.3e-28  Score=272.88  Aligned_cols=239  Identities=14%  Similarity=0.059  Sum_probs=173.8

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchh--hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD--AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .-+|.|.||+|...      +..++.|++........  ...-.++...+...+|||++.++........       ..+
T Consensus        29 ~~g~~~~v~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~-------~~~   95 (283)
T PHA02988         29 KENDQNSIYKGIFN------NKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVD-------DLP   95 (283)
T ss_pred             eeCCceEEEEEEEC------CEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEeccc-------CCC
Confidence            45688999999873      34555555433222111  1233467778889999999987755432000       000


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCCcEEEecccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                      ..     .++|||+.||+|.++|...+ .++....+.++.|++.||.|||+ .+++||||||+||+++.++.+|++|||+
T Consensus        96 ~~-----~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~  169 (283)
T PHA02988         96 RL-----SLILEYCTRGYLREVLDKEK-DLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGL  169 (283)
T ss_pred             ce-----EEEEEeCCCCcHHHHHhhCC-CCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccch
Confidence            11     14899999999999997654 56777899999999999999998 5999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++.+..+.                                                                        
T Consensus       170 ~~~~~~~~------------------------------------------------------------------------  177 (283)
T PHA02988        170 EKILSSPP------------------------------------------------------------------------  177 (283)
T ss_pred             Hhhhcccc------------------------------------------------------------------------
Confidence            87543100                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC--CCCCccccchhhhHHHHHHcCC---CC
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG--GVCTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~--~~~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                        ...+||..|+|||++.+  ..++.++|||||||++|||+++   |.
T Consensus       178 ----------------------------------~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~  223 (283)
T PHA02988        178 ----------------------------------FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFE  223 (283)
T ss_pred             ----------------------------------ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCC
Confidence                                              02356788999999977  6799999999999999999985   54


Q ss_pred             cHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          531 SERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       531 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .................++.....++.+.+|+.+||+.||.+|||+.|+++.
T Consensus       224 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~  275 (283)
T PHA02988        224 NLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYN  275 (283)
T ss_pred             CCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHH
Confidence            4333332222222222222223567889999999999999999999999873

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=2.4e-28  Score=274.42  Aligned_cols=241  Identities=15%  Similarity=0.120  Sum_probs=178.4

Q ss_pred             hccccceeeeCCCCCcccccccccccccc--ccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAF--VTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      +.+.+|.||.+...-    ..+.+++|-.  +|......-.--+++++.|+..+|||++.                   .
T Consensus        35 GHGSFGAVYfArd~~----n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntie-------------------Y   91 (948)
T KOG0577|consen   35 GHGSFGAVYFARDVR----NSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIE-------------------Y   91 (948)
T ss_pred             cCCccceeEEeeccC----ccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCccc-------------------c
Confidence            345689999998732    2344444332  22222222334678899999999999885                   1


Q ss_pred             Cccc---cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecc
Q 001366          297 ASCW---IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGP  373 (1092)
Q Consensus       297 ~~~~---~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Df  373 (1092)
                      ..||   +-.+++||||-| +-.|+|.-....+-+.++..|+.+.|.||.|||+.+.||||||..||||+..|.||++||
T Consensus        92 kgCyLre~TaWLVMEYClG-SAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDF  170 (948)
T KOG0577|consen   92 KGCYLREHTAWLVMEYCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADF  170 (948)
T ss_pred             cceeeccchHHHHHHHHhc-cHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccc
Confidence            3455   346789999987 344444433345777799999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCC
Q 001366          374 IIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPH  453 (1092)
Q Consensus       374 g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  453 (1092)
                      |.+....                                                                         
T Consensus       171 GSAsi~~-------------------------------------------------------------------------  177 (948)
T KOG0577|consen  171 GSASIMA-------------------------------------------------------------------------  177 (948)
T ss_pred             cchhhcC-------------------------------------------------------------------------
Confidence            9876533                                                                         


Q ss_pred             CCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC---CCCCccccchhhhHHHHHHcCC--
Q 001366          454 SHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG---GVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~---~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                        ...+++|||+|||||+|..   +.|+-++||||||++..||...  
T Consensus       178 ----------------------------------PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkP  223 (948)
T KOG0577|consen  178 ----------------------------------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP  223 (948)
T ss_pred             ----------------------------------chhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCC
Confidence                                              0127899999999999875   7899999999999999999974  


Q ss_pred             -CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          529 -FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                       +..-+...+++.+.....+--.-...+..++.|+..||.+=|.+|||.+++|.|+|+...+.
T Consensus       224 PlFnMNAMSALYHIAQNesPtLqs~eWS~~F~~Fvd~CLqKipqeRptse~ll~H~fv~R~Rp  286 (948)
T KOG0577|consen  224 PLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQERPTSEELLKHRFVLRERP  286 (948)
T ss_pred             CccCchHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhhCcccCCcHHHHhhcchhccCCC
Confidence             22233444444443322111112334677999999999999999999999999999976543

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.95  E-value=3.7e-29  Score=275.37  Aligned_cols=243  Identities=21%  Similarity=0.266  Sum_probs=178.9

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhH-hhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAA-LKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..||.|.||++....    .++..+.|+........... ...++...+...+|||++.+.+....+...+         
T Consensus         8 g~G~~g~v~~~~~~~----~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~---------   74 (260)
T PF00069_consen    8 GSGGFGTVYKAKNKK----NGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLY---------   74 (260)
T ss_dssp             EEESSEEEEEEEETT----TTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEE---------
T ss_pred             EeCCCEEEEEEEECC----CCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccc---------
Confidence            346889999999844    23455666654443333322 2234666777789999998777665433333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+|+|+.+++|.++|... ..++..+++.++.||++||+|||++||+|+||||+||+++.++.++++|||.+.
T Consensus        75 -------~v~~~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~  146 (260)
T PF00069_consen   75 -------IVMEYCPGGSLQDYLQKN-KPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSV  146 (260)
T ss_dssp             -------EEEEEETTEBHHHHHHHH-SSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTE
T ss_pred             -------cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                   389999999999999843 357888999999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .....                                                                           
T Consensus       147 ~~~~~---------------------------------------------------------------------------  151 (260)
T PF00069_consen  147 KLSEN---------------------------------------------------------------------------  151 (260)
T ss_dssp             ESTST---------------------------------------------------------------------------
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            53100                                                                           


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-CCCCCccccchhhhHHHHHHcCC---CCcH-
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-GGVCTTSSNIYSLGVLFFELFGR---FDSE-  532 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-~~~~t~~sDIwSLGvll~ell~~---f~~~-  532 (1092)
                                                  ........+|.+|+|||++. +..++.++|||||||++|+|+++   |... 
T Consensus       152 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~  203 (260)
T PF00069_consen  152 ----------------------------NENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESN  203 (260)
T ss_dssp             ----------------------------TSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSS
T ss_pred             ----------------------------cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                        00112456788999999998 78899999999999999999986   3332 


Q ss_pred             -HHHHHHHHhccccCCCCCC---CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          533 -RALAAAMSDLRDRILPPSF---LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       533 -~~~~~~~~~~~~~~~p~~~---~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                       ......+.......++...   ....+.+.+|+.+||+.||++||++.++++||||
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~~~~~  260 (260)
T PF00069_consen  204 SDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELLKHPWF  260 (260)
T ss_dssp             HHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHTSGGG
T ss_pred             chhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHHHHhcCCCC
Confidence             1222222222221111111   1123788999999999999999999999999997

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.95  E-value=5.2e-28  Score=265.77  Aligned_cols=241  Identities=17%  Similarity=0.176  Sum_probs=177.5

Q ss_pred             cccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|.||++...+    .+..++.|....... .........+...++..+|||++........+...+           
T Consensus        11 g~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   75 (256)
T cd08529          11 GSFGVVFKVVRKA----DKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLN-----------   75 (256)
T ss_pred             CCCeEEEEEEEcC----CCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEE-----------
Confidence            4678999987632    233444443322221 222333444566678889999998766544332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           ++|||+.|++|.++|... +..++...++.++.||+.||.|||++||+|+||||+||+++.++.+|++|||+++.
T Consensus        76 -----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~  150 (256)
T cd08529          76 -----IVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKL  150 (256)
T ss_pred             -----EEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEccccccee
Confidence                 389999999999999764 55678888999999999999999999999999999999999999999999998775


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +....                                                                           
T Consensus       151 ~~~~~---------------------------------------------------------------------------  155 (256)
T cd08529         151 LSDNT---------------------------------------------------------------------------  155 (256)
T ss_pred             ccCcc---------------------------------------------------------------------------
Confidence            43100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                  .......|+++|+|||.+.+..++.++|||||||++|||+++   |......
T Consensus       156 ----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  207 (256)
T cd08529         156 ----------------------------NFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQG  207 (256)
T ss_pred             ----------------------------chhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                        000134578899999999998899999999999999999986   4333332


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .... .......++.....++.+.+++.+||+.+|++||++.++++|||+
T Consensus       208 ~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  256 (256)
T cd08529         208 ALIL-KIIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRNPSL  256 (256)
T ss_pred             HHHH-HHHcCCCCCCccccCHHHHHHHHHHccCCcccCcCHHHHhhCCCC
Confidence            2222 222333344333567889999999999999999999999999985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.6e-26  Score=247.88  Aligned_cols=292  Identities=15%  Similarity=0.181  Sum_probs=234.7

Q ss_pred             cccchhhhccchhhhhhccccccCCCCc--EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEE
Q 001366          720 RADNDLLRDRENLFLAQQDQEIQNPTDR--LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAA  797 (1092)
Q Consensus       720 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~--l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latg  797 (1092)
                      ..+-+++..|.+.+..+.+    +++++  .+++.|.+..+|....-..  .....++.+|..+|.-|.|+||.+||++|
T Consensus       214 ~qt~qil~~htdEVWfl~F----S~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaC  287 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQF----SHNGKYLASASKDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLAC  287 (519)
T ss_pred             chhhhhHhhCCCcEEEEEE----cCCCeeEeeccCCceEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEEec
Confidence            3445778888887776654    44444  4778999999998643221  11134678999999999999999999999


Q ss_pred             eCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccC-ccEEE
Q 001366          798 GVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHE-KRAWS  876 (1092)
Q Consensus       798 g~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~-~~V~s  876 (1092)
                      |.|..+.+||+.+...   ...++   .++...+.+++|.|| +..+++|+.|++|..||++ |..+...++-. ..|++
T Consensus       288 g~~e~~~lwDv~tgd~---~~~y~---~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~d  359 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTGDL---RHLYP---SGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHD  359 (519)
T ss_pred             CchHheeeccCCcchh---hhhcc---cCcCCCcceeEEccC-CceeEecCCCCcEEEecCC-cchhhcccccccceeEE
Confidence            9999999999986321   11111   224578999999999 8899999999999999985 55555555433 46999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCC
Q 001366          877 VDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGH  956 (1092)
Q Consensus       877 v~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H  956 (1092)
                      ++..+ ||+.+++...|..|++++.++......+....+|++++.+.++. ++++.-.+..+++||+...+ .+..+.||
T Consensus       360 lait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e~~-lv~kY~Gh  436 (519)
T KOG0293|consen  360 LAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEENK-LVRKYFGH  436 (519)
T ss_pred             EEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecchhh-HHHHhhcc
Confidence            99999 89999999999999999999888887888889999999999995 88889999999999999554 45667788


Q ss_pred             CCCeEEE--EEc--CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC-EEEEEecCCcEE
Q 001366          957 EKAVSYV--KFL--DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG-YIACGSESNEVY 1031 (1092)
Q Consensus       957 ~~~V~~v--~fs--~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~I~ 1031 (1092)
                      +..-.-+  +|-  +..+++|||.|+.|+||+..        .+.++.++.||...|++|+|+|... ++|++|+||+|+
T Consensus       437 kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~--------sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIR  508 (519)
T KOG0293|consen  437 KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI--------SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIR  508 (519)
T ss_pred             cccceEEEeccCCCCcceEEecCCCceEEEEEcc--------CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEE
Confidence            7643333  443  66789999999999999998        5778999999999999999999764 799999999999


Q ss_pred             EEeCC
Q 001366         1032 AYHRS 1036 (1092)
Q Consensus      1032 Iwd~~ 1036 (1092)
                      ||-..
T Consensus       509 IWg~~  513 (519)
T KOG0293|consen  509 IWGPS  513 (519)
T ss_pred             EecCC
Confidence            99643

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.95  E-value=1.4e-28  Score=293.47  Aligned_cols=272  Identities=18%  Similarity=0.175  Sum_probs=184.6

Q ss_pred             CcCCccccCcceeeecccCCchhHHHhhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCC
Q 001366          191 LSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNA  270 (1092)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (1092)
                      +.+-++..|+.+-+|.-         .-+-+|++.||.++....-    ..+|.|..+.. ...+-+...+++..+..++
T Consensus        27 ~~G~~~~Vg~~~v~V~~---------vLAEGGFa~VYla~~~~~~----~~~AlKrm~~~-de~~L~~v~~EI~~MK~L~   92 (738)
T KOG1989|consen   27 FVGQTFTVGSHRVTVEK---------VLAEGGFAQVYLAQDVKGG----KKYALKRMYVN-DEEALNAVKREIDIMKLLS   92 (738)
T ss_pred             CCceEEEECCEEEEEEE---------EEccCCcEEEEEEEecCCC----ceeeeeeeecC-CHHHHHHHHHHHHHHHHhc
Confidence            33455556665555321         1133466667766664421    33444433333 2334455666666677775


Q ss_pred             -CCCCCccccc-eecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhh
Q 001366          271 -SPKPVGVGTA-VVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHT  347 (1092)
Q Consensus       271 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs  347 (1092)
                       |+|||..+++ .......     .++     ....++||||.||.|-|+|+.+ ...+++.+++.||.|+++||.+||.
T Consensus        93 gh~nIV~yidss~~~~~~~-----~~~-----~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~  162 (738)
T KOG1989|consen   93 GHKNIVSYIDSSAINRSSN-----NGV-----WEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHY  162 (738)
T ss_pred             CCCceeeEeccccccccCC-----Cce-----eEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence             9999998885 2211111     111     1245799999999999999753 3348888999999999999999999


Q ss_pred             cC--ccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccc
Q 001366          348 QG--VTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSR  425 (1092)
Q Consensus       348 ~g--IvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (1092)
                      +.  |||||||-+||||..+|+.||||||.+....-+...        .-.+.                           
T Consensus       163 ~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~--------~~e~~---------------------------  207 (738)
T KOG1989|consen  163 LKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTS--------AQEVN---------------------------  207 (738)
T ss_pred             CCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCcc--------HHHHH---------------------------
Confidence            98  999999999999999999999999987542210000        00000                           


Q ss_pred             ccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc
Q 001366          426 WWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS  505 (1092)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~  505 (1092)
                                                                             ..+   ..+ ...-|+-|+|||.+.
T Consensus       208 -------------------------------------------------------~ve---~eI-~k~TTp~YRsPEMID  228 (738)
T KOG1989|consen  208 -------------------------------------------------------YVE---EEI-EKYTTPQYRSPEMID  228 (738)
T ss_pred             -------------------------------------------------------HHH---HHH-HhhCCccccChHHHh
Confidence                                                                   000   001 223478899999874


Q ss_pred             ---CCCCCccccchhhhHHHHHHcC---CCCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHH
Q 001366          506 ---GGVCTTSSNIYSLGVLFFELFG---RFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI  579 (1092)
Q Consensus       506 ---~~~~t~~sDIwSLGvll~ell~---~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~ei  579 (1092)
                         +.+++.|+|||+|||+||-|+.   ||+....    ..++....-.|.++..+..+.+||..||+++|+.||++.++
T Consensus       229 lysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~----laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv  304 (738)
T KOG1989|consen  229 LYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK----LAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQV  304 (738)
T ss_pred             hhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc----eeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHH
Confidence               5788999999999999999984   5655422    23344444445567778999999999999999999999999


Q ss_pred             hhhhh
Q 001366          580 LQSEV  584 (1092)
Q Consensus       580 L~~~~  584 (1092)
                      +..-+
T Consensus       305 ~~~~~  309 (738)
T KOG1989|consen  305 LEEIF  309 (738)
T ss_pred             HHHHH
Confidence            98644

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.95  E-value=1e-27  Score=267.39  Aligned_cols=251  Identities=15%  Similarity=0.093  Sum_probs=178.8

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccc-cccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFK-ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+++.++  |.|.||+|...+... .....++.|+..............++..++....|||++..+.........+ 
T Consensus         6 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~-   84 (280)
T cd05049           6 TIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI-   84 (280)
T ss_pred             HhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE-
Confidence            455555554  789999997644211 2234556655533323323344455667788889999998766655433222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcC-------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCC
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLK  356 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLK  356 (1092)
                                     .+|+|++|++|.++|...+             ..++..++..++.||+.||.|||++||+|||||
T Consensus        85 ---------------lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlk  149 (280)
T cd05049          85 ---------------MVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLA  149 (280)
T ss_pred             ---------------EEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccc
Confidence                           3899999999999997643             246677889999999999999999999999999


Q ss_pred             CCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCC
Q 001366          357 PSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGN  436 (1092)
Q Consensus       357 P~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (1092)
                      |+||+++.++.+|++|||+++........                                                   
T Consensus       150 p~nili~~~~~~kl~d~g~~~~~~~~~~~---------------------------------------------------  178 (280)
T cd05049         150 TRNCLVGYDLVVKIGDFGMSRDVYTTDYY---------------------------------------------------  178 (280)
T ss_pred             cceEEEcCCCeEEECCcccceecccCcce---------------------------------------------------
Confidence            99999999999999999988654310000                                                   


Q ss_pred             cccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccch
Q 001366          437 KIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIY  516 (1092)
Q Consensus       437 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIw  516 (1092)
                                                                        ..-....++..|+|||.+.+..++.++|||
T Consensus       179 --------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  208 (280)
T cd05049         179 --------------------------------------------------RVGGHTMLPIRWMPPESIMYRKFTTESDVW  208 (280)
T ss_pred             --------------------------------------------------ecCCCCcccceecChhhhccCCcchhhhHH
Confidence                                                              000022356779999999999999999999


Q ss_pred             hhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          517 SLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       517 SLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ||||++|||++ +   |..... ......+.....++.....+..+.+|+.+||.++|.+||++.|+++
T Consensus       209 slG~il~e~~~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  276 (280)
T cd05049         209 SFGVVLWEIFTYGKQPWYGLSN-EEVIECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHE  276 (280)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCH-HHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            99999999997 5   322222 1222222333333333456788999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.95  E-value=3.1e-28  Score=272.44  Aligned_cols=242  Identities=16%  Similarity=0.163  Sum_probs=168.3

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchh-hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||++....    .+..++.|.......... .....++..++...+|||++.+++........+          
T Consensus        10 ~g~~~~vy~~~~~~----~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~----------   75 (284)
T cd07839          10 EGTYGTVFKAKNRE----THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLT----------   75 (284)
T ss_pred             ccCCeEEEEEEECC----CCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceE----------
Confidence            34678999987632    244445444322111111 122334566777889999998766544322222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .++||++| +|.+++...+..++...++.++.||+.||.|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        76 ------lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~  148 (284)
T cd07839          76 ------LVFEYCDQ-DLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARA  148 (284)
T ss_pred             ------EEEecCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhc
Confidence                  37889875 89888876556688889999999999999999999999999999999999999999999998865


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +....                                                                           
T Consensus       149 ~~~~~---------------------------------------------------------------------------  153 (284)
T cd07839         149 FGIPV---------------------------------------------------------------------------  153 (284)
T ss_pred             cCCCC---------------------------------------------------------------------------
Confidence            33100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC----CCcHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR----FDSER  533 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~----f~~~~  533 (1092)
                                                  .......++.+|+|||.+.+. .++.++|||||||++|||+++    |.+..
T Consensus       154 ----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~  205 (284)
T cd07839         154 ----------------------------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND  205 (284)
T ss_pred             ----------------------------CCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence                                        001133567889999998874 479999999999999999974    22222


Q ss_pred             HHHHH---HHhc--------------cccC-CC---------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          534 ALAAA---MSDL--------------RDRI-LP---------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       534 ~~~~~---~~~~--------------~~~~-~p---------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .....   +..+              .... .+         +.....++++.+|+.+||+.||.+|||+.+++.||||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         206 VDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF  284 (284)
T ss_pred             HHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcCCCC
Confidence            11111   1100              0000 00         1122356788999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=256.71  Aligned_cols=279  Identities=22%  Similarity=0.296  Sum_probs=231.2

Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          778 SANVICSISFDRDED-HFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       778 h~~~V~sl~fspdg~-~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      -.+.|++++|+|... -+|+++ ...+.||+..+..       ........+..|.+++|..| |.+||+|+..|.|+|+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~-------~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vf   95 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRS-------VRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVF   95 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhh-------hhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEe
Confidence            346899999999654 355544 4579999876411       11112234678999999998 9999999999999999


Q ss_pred             ECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECC
Q 001366          857 DACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSAD  935 (1092)
Q Consensus       857 D~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~D  935 (1092)
                      |..+...++.+.+|+.+|..+.|+|.++++|++|++|+.+++||+.+......+. |...|.|.+|+|...+++++|+.|
T Consensus        96 D~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD  175 (487)
T KOG0310|consen   96 DMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD  175 (487)
T ss_pred             ccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence            9777678888999999999999999999999999999999999999988644555 678899999999988899999999


Q ss_pred             CeEEEEEcCCCCcceEEecCCCCCeEEEEEcCC-CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEE
Q 001366          936 YRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDS-GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGL 1014 (1092)
Q Consensus       936 g~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~-~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~ 1014 (1092)
                      |.|++||+|.....+..+ .|..+|..|.|.++ ..+++++ .+.|+|||+-++       ++.+.....|...|+|+.+
T Consensus       176 g~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G-------~qll~~~~~H~KtVTcL~l  246 (487)
T KOG0310|consen  176 GKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTG-------GQLLTSMFNHNKTVTCLRL  246 (487)
T ss_pred             ceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCC-------ceehhhhhcccceEEEEEe
Confidence            999999999875444444 69999999999865 5666655 668999999843       2344455569999999999


Q ss_pred             ecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEE
Q 001366         1015 STADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVL 1089 (1092)
Q Consensus      1015 spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW 1089 (1092)
                      ..++..|++||-|+.|+||++.+-+.+.+.++               .++|.+++.+|+++.++.|.+||.+-+-
T Consensus       247 ~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---------------~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  247 ASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---------------PGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ecCCceEeecccccceEEEEccceEEEEeeec---------------ccceeeEEecCCCceEEEecccceeeee
Confidence            99999999999999999999888888887776               5689999999999999999999988653

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.95  E-value=2.7e-28  Score=279.89  Aligned_cols=246  Identities=13%  Similarity=0.069  Sum_probs=175.3

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++....    .+..++.|+......  .........+..++....|++++.+......+...+         
T Consensus        11 ~G~fg~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~---------   77 (331)
T cd05624          11 RGAFGEVAVVKMKH----TERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLY---------   77 (331)
T ss_pred             eCCCeEEEEEEECC----CCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEE---------
Confidence            34789999987532    234455554421111  111111233445566778999888766554333333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||+.||+|.++|......+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus        78 -------lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~  150 (331)
T cd05624          78 -------LVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCL  150 (331)
T ss_pred             -------EEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEecccee
Confidence                   3899999999999998755567888999999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .......                                                                         
T Consensus       151 ~~~~~~~-------------------------------------------------------------------------  157 (331)
T cd05624         151 KMNQDGT-------------------------------------------------------------------------  157 (331)
T ss_pred             eccCCCc-------------------------------------------------------------------------
Confidence            6431000                                                                         


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----CCCCccccchhhhHHHHHHcCC---C
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----GVCTTSSNIYSLGVLFFELFGR---F  529 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----~~~t~~sDIwSLGvll~ell~~---f  529 (1092)
                                                   ......+||+.|+|||++.+     +.++.++|||||||+||||++|   |
T Consensus       158 -----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf  208 (331)
T cd05624         158 -----------------------------VQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPF  208 (331)
T ss_pred             -----------------------------eeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCc
Confidence                                         00013468999999999876     4688999999999999999986   4


Q ss_pred             CcHHHHHHHHHhccc---cCCCCCCCCCChhHHHHHHhccccCCCC--CCCHHHHhhhhhhhh
Q 001366          530 DSERALAAAMSDLRD---RILPPSFLSENPKEAGFCLWQLHPEPLS--RPTTREILQSEVTNE  587 (1092)
Q Consensus       530 ~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~li~~lL~~dP~~--Rpsa~eiL~~~~~~~  587 (1092)
                      ...............   ..+|+.....++.+.+|+.+||+.++.+  |++++++++|+||..
T Consensus       209 ~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~~f~~  271 (331)
T cd05624         209 YAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEG  271 (331)
T ss_pred             cCCCHHHHHHHHHcCCCcccCCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcCCCcCC
Confidence            333322222222221   2244555566888999999999876654  468999999999975

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=1.4e-26  Score=242.26  Aligned_cols=249  Identities=18%  Similarity=0.270  Sum_probs=207.3

Q ss_pred             eeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCC-ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEe
Q 001366          822 AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTG-QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN  900 (1092)
Q Consensus       822 ~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg-~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWD  900 (1092)
                      ....+|++.|.++.|+|+ +.+||||+.|..|.+|++... +-...+++|.+.|..+.|.+ +++.++|+|.|.+|+.||
T Consensus        41 m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEe
Confidence            345689999999999997 999999999999999996533 45667889999999999999 999999999999999999


Q ss_pred             cCCCceeeeEec-CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCC
Q 001366          901 INEKNSLATIKN-IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDN  978 (1092)
Q Consensus       901 l~~~~~l~~l~~-~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg  978 (1092)
                      +++|+++..++. ..-|+++.-+.-|..++.+|+.|+++++||+|+... +.++. .+..++++.|. .+..+++|+-|+
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~-~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE-NKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-cceeEEEEEecccccceeeccccC
Confidence            999999998884 556777876656778999999999999999997543 34443 35679999998 677899999999


Q ss_pred             eEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceee-eeccccCCCCCccc
Q 001366          979 KLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITS-YKFGSIDPISGKET 1057 (1092)
Q Consensus       979 ~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~-~~~~~~~~i~~~~~ 1057 (1092)
                      .|++||++        .+...+++.||...|+.+..+++|.++.+-+.|+++++||+..-.+-.. +.     ...+   
T Consensus       197 ~ikvWd~r--------~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~-----if~g---  260 (338)
T KOG0265|consen  197 DIKVWDLR--------KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVK-----IFQG---  260 (338)
T ss_pred             ceeeeccc--------cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEE-----Eeec---
Confidence            99999999        4567899999999999999999999999999999999999764332221 10     0001   


Q ss_pred             cCCCC--CCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1058 DDDNG--LFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1058 ~~~h~--~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                       ..|+  .....++|+|++..+.+|+.|..|++|+-
T Consensus       261 -~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~  295 (338)
T KOG0265|consen  261 -HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT  295 (338)
T ss_pred             -chhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence             1122  23577899999999999999999999984

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.5e-26  Score=273.51  Aligned_cols=273  Identities=20%  Similarity=0.349  Sum_probs=237.1

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccccccee-eecCCCCeEEEEEecCCCCEEEEEECCCcEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAV-EMSNRSKLSCVCWNNYIKNYLASADYDGVVKL  855 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~I  855 (1092)
                      .+...+.+..|+  +.++++++.|.+|++|+...       ...... ..+|.+.|.++++.. .+..|++||.|.++++
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~-------~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rv  275 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN-------GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERV  275 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeeccc-------ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEe
Confidence            356677888888  66899999999999999765       222233 678999999999986 4789999999999999


Q ss_pred             EECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEEC
Q 001366          856 WDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSA  934 (1092)
Q Consensus       856 WD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~  934 (1092)
                      ||+.+|+|...+.+|...|.++...+   ..+++||.|.+|++|++.++.++.++. |.+.|+++..+  + .++++|+.
T Consensus       276 Wd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~  349 (537)
T KOG0274|consen  276 WDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E-PLLVSGSY  349 (537)
T ss_pred             EecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C-CEEEEEec
Confidence            99999999999999999999998865   678999999999999999999999999 89999999998  3 48999999


Q ss_pred             CCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCC-ceeEEEcCCCCCeEEEE
Q 001366          935 DYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTN-ACSLTFSGHTNEKNFVG 1013 (1092)
Q Consensus       935 Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~-~~~~~l~~h~~~V~~v~ 1013 (1092)
                      |++|++||+++.+ .+.++.+|...|.++.+.....+++|+.|++|++||+++        . .|+.++.+|..-++.+.
T Consensus       350 d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~--------~~~c~~tl~~h~~~v~~l~  420 (537)
T KOG0274|consen  350 DGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRT--------KRKCIHTLQGHTSLVSSLL  420 (537)
T ss_pred             CceEEEEEhhhce-eeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCc--------hhhhhhhhcCCcccccccc
Confidence            9999999999765 678999999999999876438999999999999999993        4 78999999999885554


Q ss_pred             EecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1014 LSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1014 ~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +  .+.+|++++.|++|++||...++.+....-             .|...|+.+++.  ...+++++.||.+++|++
T Consensus       421 ~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~-------------~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  421 L--RDNFLVSSSADGTIKLWDAEEGECLRTLEG-------------RHVGGVSALALG--KEEILCSSDDGSVKLWDL  481 (537)
T ss_pred             c--ccceeEeccccccEEEeecccCceeeeecc-------------CCcccEEEeecC--cceEEEEecCCeeEEEec
Confidence            4  466999999999999999999988876641             145678888877  568889999999999986

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.95  E-value=3.5e-28  Score=276.06  Aligned_cols=243  Identities=19%  Similarity=0.173  Sum_probs=174.1

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|.||++....    .+..++.|+..............++...+....|||++.+......+...+           
T Consensus        11 ~G~~g~v~~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-----------   75 (308)
T cd06615          11 AGNGGVVTKVLHRP----SGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEIS-----------   75 (308)
T ss_pred             CCCCeEEEEEEEcC----CCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEE-----------
Confidence            44789999987522    233444443322212222333456667788889999998876655433333           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .+|||++|++|.++++..+ .++...+..++.||+.||+|||+ +||+||||||+||+++.++.+|++|||+++.
T Consensus        76 -----lv~ey~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  149 (308)
T cd06615          76 -----ICMEHMDGGSLDQVLKKAG-RIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  149 (308)
T ss_pred             -----EEeeccCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCccc
Confidence                 3899999999999997764 46777899999999999999997 6999999999999999999999999998754


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       150 ~~~~~---------------------------------------------------------------------------  154 (308)
T cd06615         150 LIDSM---------------------------------------------------------------------------  154 (308)
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            32100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                    ....+|+..|+|||.+.+..++.++|||||||++|||+++   |......
T Consensus       155 ------------------------------~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~  204 (308)
T cd06615         155 ------------------------------ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAK  204 (308)
T ss_pred             ------------------------------cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchh
Confidence                                          0134678889999999888899999999999999999986   3222111


Q ss_pred             --HHHHHhccc--------------------------------cCCCCCCC--CCChhHHHHHHhccccCCCCCCCHHHH
Q 001366          536 --AAAMSDLRD--------------------------------RILPPSFL--SENPKEAGFCLWQLHPEPLSRPTTREI  579 (1092)
Q Consensus       536 --~~~~~~~~~--------------------------------~~~p~~~~--~~~~~~~~li~~lL~~dP~~Rpsa~ei  579 (1092)
                        ...+.....                                ...+|..+  ..++++++|+.+||.++|++||++.++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~l  284 (308)
T cd06615         205 ELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKEL  284 (308)
T ss_pred             hHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHH
Confidence              111100000                                00011111  246778999999999999999999999


Q ss_pred             hhhhhhhhh
Q 001366          580 LQSEVTNEF  588 (1092)
Q Consensus       580 L~~~~~~~~  588 (1092)
                      ++||||...
T Consensus       285 l~~~~~~~~  293 (308)
T cd06615         285 TKHPFIKRA  293 (308)
T ss_pred             hcChhhhhc
Confidence            999999763

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6.8e-29  Score=282.53  Aligned_cols=244  Identities=17%  Similarity=0.149  Sum_probs=184.1

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +-.|+||.|+.-+    ++.++++|-..-.+...-+ -.-.+.+|-...+|.||+..+....-++..             
T Consensus       586 GTYG~VYA~RD~~----tqvrIaIKEIpekdsr~~Q-PLhEEIaLH~~LrHkNIVrYLGs~senGf~-------------  647 (1226)
T KOG4279|consen  586 GTYGTVYAARDMD----TQVRIAIKEIPEKDSREVQ-PLHEEIALHSTLRHKNIVRYLGSVSENGFF-------------  647 (1226)
T ss_pred             CceeEEEeecccc----ceeEEEeeecccccchhhc-cHHHHHHHHHHHhhHhHHHHhhccCCCCeE-------------
Confidence            3469999999844    4555555333222211111 123345666778999999755443333322             


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc-cCCcEEEecccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKG--KRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL-QSNQVKYIGPIIQK  377 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~--~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~-~~~~vkl~Dfg~~~  377 (1092)
                         .+.||..+||+|..+|+..=.++  ++..+-.+-+||++||.|||.+.|||||||-+|+|+. -+|.+||.|||.++
T Consensus       648 ---kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsK  724 (1226)
T KOG4279|consen  648 ---KIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSK  724 (1226)
T ss_pred             ---EEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccch
Confidence               24799999999999997754444  7777888999999999999999999999999999996 68999999999998


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+..                                                                     +    |+
T Consensus       725 RLAg---------------------------------------------------------------------i----nP  731 (1226)
T KOG4279|consen  725 RLAG---------------------------------------------------------------------I----NP  731 (1226)
T ss_pred             hhcc---------------------------------------------------------------------C----Cc
Confidence            7661                                                                     0    00


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC--CCccccchhhhHHHHHHcCCCCcH---
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV--CTTSSNIYSLGVLFFELFGRFDSE---  532 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~--~t~~sDIwSLGvll~ell~~f~~~---  532 (1092)
                      ..                              .++.||..|||||++..++  |+.++|||||||++.||.||-+++   
T Consensus       732 ~T------------------------------ETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~El  781 (1226)
T KOG4279|consen  732 CT------------------------------ETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVEL  781 (1226)
T ss_pred             cc------------------------------cccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeec
Confidence            01                              1567999999999998854  899999999999999999974443   


Q ss_pred             -HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          533 -RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       533 -~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                       +...+..+.-.-..-||...+.+.+...||++|+.++|.+||+|.++|+.||+...
T Consensus       782 gspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~DpFlq~~  838 (1226)
T KOG4279|consen  782 GSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQDPFLQHN  838 (1226)
T ss_pred             CChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccCcccccC
Confidence             34444444444556677777778999999999999999999999999999999865

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.95  E-value=9.7e-28  Score=268.84  Aligned_cols=252  Identities=17%  Similarity=0.130  Sum_probs=180.4

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ++.|+||++...    ..+..++.|...............++...+...+|||++..+.....+...+   
T Consensus         3 ~~~~~~ig~g~~g~v~~~~~~----~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~---   75 (286)
T cd06622           3 IEVLDELGKGNYGSVYKVLHR----PTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVY---   75 (286)
T ss_pred             hhhhhhhcccCCeEEEEEEEc----CCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEE---
Confidence            3444443  468999999763    2245555654422222222344445666778889999998766544322222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCCcE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNAR--GHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~--~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                   .+|||++|++|.+++...  ...+++..++.++.||+.||.|||+ .||+||||||+||+++.++.+
T Consensus        76 -------------lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~  142 (286)
T cd06622          76 -------------MCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQV  142 (286)
T ss_pred             -------------EEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCE
Confidence                         379999999999998764  2357888999999999999999997 599999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||+++......                                                                 
T Consensus       143 ~l~dfg~~~~~~~~~-----------------------------------------------------------------  157 (286)
T cd06622         143 KLCDFGVSGNLVASL-----------------------------------------------------------------  157 (286)
T ss_pred             EEeecCCcccccCCc-----------------------------------------------------------------
Confidence            999999876532100                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC------CCCccccchhhhHHH
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG------VCTTSSNIYSLGVLF  522 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~------~~t~~sDIwSLGvll  522 (1092)
                                                              .....|++.|+|||.+.+.      .++.++|||||||+|
T Consensus       158 ----------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il  197 (286)
T cd06622         158 ----------------------------------------AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSI  197 (286)
T ss_pred             ----------------------------------------cccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHH
Confidence                                                    0023467789999998653      358899999999999


Q ss_pred             HHHcCC---CCcHHH--HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          523 FELFGR---FDSERA--LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       523 ~ell~~---f~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      |||+++   |.....  ....+..+.....+......++.+.+|+.+||+++|++||++.+++.||||.....
T Consensus       198 ~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~~~~~~~~~  270 (286)
T cd06622         198 LEMALGRYPYPPETYANIFAQLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEHPWLVKYKN  270 (286)
T ss_pred             HHHHhCCCCCCCcchhhHHHHHHHHhhcCCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhcChhhhhccC
Confidence            999986   332211  12222223333333344456788999999999999999999999999999977543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.95  E-value=7.3e-28  Score=269.55  Aligned_cols=245  Identities=18%  Similarity=0.171  Sum_probs=172.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|+||+|.....-...+..++.|...............++..+++...|||++.++.........+           
T Consensus        15 ~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~-----------   83 (283)
T cd05090          15 ECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVC-----------   83 (283)
T ss_pred             ccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceE-----------
Confidence            347899999874110011123334433332222222233345667888899999998765544332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcC----------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARG----------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~----------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                           .+|||+.+++|.++|....                ..++..+++.++.||+.||.|||++||+||||||+||+++
T Consensus        84 -----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~  158 (283)
T cd05090          84 -----MLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIG  158 (283)
T ss_pred             -----EEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEc
Confidence                 3899999999999995332                2366778899999999999999999999999999999999


Q ss_pred             cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCc
Q 001366          364 QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANE  443 (1092)
Q Consensus       364 ~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1092)
                      .++.+|++|||+++........                                                          
T Consensus       159 ~~~~~kl~dfg~~~~~~~~~~~----------------------------------------------------------  180 (283)
T cd05090         159 EQLHVKISDLGLSREIYSADYY----------------------------------------------------------  180 (283)
T ss_pred             CCCcEEeccccccccccCCcce----------------------------------------------------------
Confidence            9999999999988764310000                                                          


Q ss_pred             cccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHH
Q 001366          444 SDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       444 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~  523 (1092)
                                                                 .......++..|+|||.+.+..++.++|||||||+||
T Consensus       181 -------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~  217 (283)
T cd05090         181 -------------------------------------------RVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLW  217 (283)
T ss_pred             -------------------------------------------ecccCCCccceecChHHhccCCCCchhhhHHHHHHHH
Confidence                                                       0001233466799999999888999999999999999


Q ss_pred             HHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          524 ELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       524 ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||++ +   |.+... ...+..+.....++.....++.+.+|+.+||+++|.+||++.+|+++
T Consensus       218 el~~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~  279 (283)
T cd05090         218 EIFSFGLQPYYGFSN-QEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTR  279 (283)
T ss_pred             HHHcCCCCCCCCCCH-HHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence            9997 4   433322 23333444444444445567889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=8.2e-28  Score=268.55  Aligned_cols=253  Identities=15%  Similarity=0.145  Sum_probs=183.0

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      +-.|.+.+.++  +.|.||++....    .+..++.|+..... ........++..++...+|||++.+.+....+...+
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~----~~~~~~iK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   78 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKE----TGLFAAAKIIQIES-EEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLW   78 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcC----CCcEEEEEEEeeCC-HHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEE
Confidence            34577766664  689999998632    23445555442211 112223334556778888999998877655433333


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      ++|||++|++|.+++...+..++..+++.++.|++.||.|||++||+|+||||+||+++.++.+
T Consensus        79 ----------------lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~  142 (280)
T cd06611          79 ----------------ILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDV  142 (280)
T ss_pred             ----------------EEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCE
Confidence                            3899999999999998776678888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      +++|||++.......                                                                 
T Consensus       143 ~l~d~g~~~~~~~~~-----------------------------------------------------------------  157 (280)
T cd06611         143 KLADFGVSAKNKSTL-----------------------------------------------------------------  157 (280)
T ss_pred             EEccCccchhhcccc-----------------------------------------------------------------
Confidence            999999775532100                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-----CCCCCccccchhhhHHHH
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-----GGVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-----~~~~t~~sDIwSLGvll~  523 (1092)
                                                            .......||..|+|||.+.     +..++.++|||||||++|
T Consensus       158 --------------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~  199 (280)
T cd06611         158 --------------------------------------QKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLI  199 (280)
T ss_pred             --------------------------------------cccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHH
Confidence                                                  0001345788899999985     345788999999999999


Q ss_pred             HHcCC---CCcHHHHHHHHHhccccCCC--CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          524 ELFGR---FDSERALAAAMSDLRDRILP--PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       524 ell~~---f~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ||+++   |.......... .+.....|  ......+..+.+|+..||+.+|.+||++.++|+||||...
T Consensus       200 ~l~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~  268 (280)
T cd06611         200 ELAQMEPPHHELNPMRVLL-KILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSDQ  268 (280)
T ss_pred             HHHhCCCCcccCCHHHHHH-HHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhcChhhccc
Confidence            99986   33322222222 22221111  1122346788999999999999999999999999999764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.95  E-value=6.6e-28  Score=266.91  Aligned_cols=246  Identities=17%  Similarity=0.136  Sum_probs=175.3

Q ss_pred             cccceeeeCCCCCccccccccccccccc-cccCc----hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFV-TTTMP----SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ++.|.||+|...+     ++.++.|+.. .....    .......++...+...+|+|++........+...+       
T Consensus        11 g~~~~v~~~~~~~-----~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~-------   78 (265)
T cd06631          11 GAYGTVYCGLTNQ-----GQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTIS-------   78 (265)
T ss_pred             cCCeEEEEEEEcC-----CCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEE-------
Confidence            4678999986532     4444554332 11111    11122334455677788999987666544332222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               .+|||+.|++|.+++.+.+ .++...+..++.||+.||+|||++||+|+||||+||+++.++.+|++|||+
T Consensus        79 ---------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~  148 (265)
T cd06631          79 ---------IFMEFVPGGSISSILNRFG-PLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGC  148 (265)
T ss_pred             ---------EEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchh
Confidence                     3799999999999997765 456778899999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++.........                                                                     
T Consensus       149 ~~~~~~~~~~~---------------------------------------------------------------------  159 (265)
T cd06631         149 ARRLAWVGLHG---------------------------------------------------------------------  159 (265)
T ss_pred             hHhhhhccccc---------------------------------------------------------------------
Confidence            87643100000                                                                     


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                  ..........|+..|+|||.+.+..++.++|+|||||++|||+++   |...
T Consensus       160 ----------------------------~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~  211 (265)
T cd06631         160 ----------------------------THSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASM  211 (265)
T ss_pred             ----------------------------cccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccC
Confidence                                        000001134688899999999998899999999999999999996   4332


Q ss_pred             HHHHHHHHhccc-cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          533 RALAAAMSDLRD-RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       533 ~~~~~~~~~~~~-~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ............ ...|+.....++.+.+|+.+||+++|.+||++.++|+||||
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~  265 (265)
T cd06631         212 DRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLRHDFL  265 (265)
T ss_pred             ChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence            222222222222 23344444567888999999999999999999999999997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.5e-26  Score=264.14  Aligned_cols=276  Identities=18%  Similarity=0.298  Sum_probs=232.7

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccc-eeeecCCCCeEE-EEEecCCCCEEEEEECCC
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYP-AVEMSNRSKLSC-VCWNNYIKNYLASADYDG  851 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~-~~~~~h~~~V~~-v~~sp~~~~~LaSgs~Dg  851 (1092)
                      .+.+|...|+.+++.+. ..++++|.|+++++|+-...      .+.. ....+|.+-|.+ +++.+..+..|++|+.|+
T Consensus         9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~------~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGK------QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             EeccCccchheeEecCC-eEEeecCCCCceeeeeccCc------ccccceecccCcceeeccceeccccCcceEeecccc
Confidence            46799999999988754 48999999999999986431      2222 234457777777 888765466799999999


Q ss_pred             cEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEE
Q 001366          852 VVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLA  930 (1092)
Q Consensus       852 tV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~la  930 (1092)
                      +|.+|......++.++.+|...|+|++... ++. ++|||+|.++++|-+.  ++...+. |.+.|+++++-|.+  .++
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~--~~v  155 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN--TYV  155 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC--cEE
Confidence            999999999999999999999999999776 555 9999999999999764  4555565 78899999999987  799


Q ss_pred             EEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeE
Q 001366          931 FGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN 1010 (1092)
Q Consensus       931 tgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~ 1010 (1092)
                      ||+.|.+|++|.-   ...+.++.+|...|+.+++.++..|+|++.||.|++|++.         +.++.++.+|++-|+
T Consensus       156 TgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~---------ge~l~~~~ghtn~vY  223 (745)
T KOG0301|consen  156 TGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD---------GEVLLEMHGHTNFVY  223 (745)
T ss_pred             eccCcceeeeccC---CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc---------CceeeeeeccceEEE
Confidence            9999999999975   3457899999999999999999999999999999999995         678999999999999


Q ss_pred             EEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1011 FVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1011 ~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      +++...+++.|+|+++|++++||+..  ..++.+..              .+..||++++-++|. +++|++||.||||-
T Consensus       224 sis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l--------------PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT  286 (745)
T KOG0301|consen  224 SISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL--------------PTTSIWSAKVLLNGD-IVVGGSDGRVRVFT  286 (745)
T ss_pred             EEEecCCCCeEEEecCCceEEEeecC--ceEEEEec--------------CccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence            99988889999999999999999876  45554432              234699999999988 56888899999995


Q ss_pred             c
Q 001366         1091 M 1091 (1092)
Q Consensus      1091 l 1091 (1092)
                      .
T Consensus       287 ~  287 (745)
T KOG0301|consen  287 V  287 (745)
T ss_pred             e
Confidence            3

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.3e-25  Score=234.61  Aligned_cols=281  Identities=18%  Similarity=0.274  Sum_probs=228.3

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEEC--CCc
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADY--DGV  852 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~--Dgt  852 (1092)
                      +..-...|+++.|+++|.++++++.|.+++|||....       ........++-.|..++|... ...++.++.  |.+
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g-------~~~~ti~skkyG~~~~~Fth~-~~~~i~sStk~d~t   81 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG-------KQVKTINSKKYGVDLACFTHH-SNTVIHSSTKEDDT   81 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC-------ceeeEeecccccccEEEEecC-CceEEEccCCCCCc
Confidence            3345678999999999999999999999999998752       222233344567788888665 455555665  899


Q ss_pred             EEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEE
Q 001366          853 VKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latg  932 (1092)
                      ||.-++.+.+.++.|.||.+.|.+++.+| -+..++|+|.|++|++||++..+|...+..... ..++|+|.| .++|++
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~G-LifA~~  158 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEG-LIFALA  158 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCC-cEEEEe
Confidence            99999999999999999999999999999 558999999999999999999888877765433 357999999 488888


Q ss_pred             ECCCeEEEEEcCCC-CcceEEec---CCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCC
Q 001366          933 SADYRTYCYDLRNA-RAPWCVLA---GHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTN 1007 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~-~~~~~~l~---~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~ 1007 (1092)
                      .....|++||+|+. +-|..++.   +.....+.|.|+ +|++|+.+...+.+.+.|.-        .+....++.++.+
T Consensus       159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf--------~G~~~~tfs~~~~  230 (311)
T KOG1446|consen  159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF--------DGTVKSTFSGYPN  230 (311)
T ss_pred             cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc--------CCcEeeeEeeccC
Confidence            88889999999986 34555543   346678999999 77888889999999999987        4556777777766


Q ss_pred             Ce---EEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCC
Q 001366         1008 EK---NFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSG 1084 (1092)
Q Consensus      1008 ~V---~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG 1084 (1092)
                      .-   -..+|+||+++|++|+.||+|.+|+..++..+...+             ..+..++.++.|+|.-.+++|+++  
T Consensus       231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~-------------~~~~~~~~~~~fnP~~~mf~sa~s--  295 (311)
T KOG1446|consen  231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR-------------GPNGGPVSCVRFNPRYAMFVSASS--  295 (311)
T ss_pred             CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec-------------CCCCCCccccccCCceeeeeecCc--
Confidence            54   467899999999999999999999999998887664             225778999999999999988874  


Q ss_pred             eEEEE
Q 001366         1085 CIKVL 1089 (1092)
Q Consensus      1085 ~V~vW 1089 (1092)
                      .+-+|
T Consensus       296 ~l~fw  300 (311)
T KOG1446|consen  296 NLVFW  300 (311)
T ss_pred             eEEEE
Confidence            45555

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.95  E-value=1.1e-27  Score=267.87  Aligned_cols=255  Identities=19%  Similarity=0.173  Sum_probs=177.0

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccc-cccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFK-ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      +++.|.+...++  |.|+||+|...+... ..+..++.|+..............++..++....|||++.++........
T Consensus         3 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~   82 (283)
T cd05091           3 NLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQP   82 (283)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCc
Confidence            345666666664  689999997643211 11334455554322211112233345566677899999987665443322


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhc---------------CCCCCHHHHHHHHHHHHHHHHHhhhcCcc
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNAR---------------GHKGKRIECLYIFRQIVALVDYHHTQGVT  351 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~---------------~~~~~~~~~~~i~~qil~~l~~lHs~gIv  351 (1092)
                      ..                ..++|+.+++|.+++...               ...++...++.++.|++.||+|+|++||+
T Consensus        83 ~~----------------~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~  146 (283)
T cd05091          83 LS----------------MIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVV  146 (283)
T ss_pred             eE----------------EEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            22                268999999999998532               12366778899999999999999999999


Q ss_pred             ccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccccc
Q 001366          352 FLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFP  431 (1092)
Q Consensus       352 HrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (1092)
                      ||||||+||++..++.+|++|||+++.......                                               
T Consensus       147 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-----------------------------------------------  179 (283)
T cd05091         147 HKDLATRNVLVFDKLNVKISDLGLFREVYAADY-----------------------------------------------  179 (283)
T ss_pred             ccccchhheEecCCCceEecccccccccccchh-----------------------------------------------
Confidence            999999999999999999999998876431000                                               


Q ss_pred             CccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCc
Q 001366          432 SKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTT  511 (1092)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~  511 (1092)
                                                                            ........+++.|+|||.+.++.++.
T Consensus       180 ------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~  205 (283)
T cd05091         180 ------------------------------------------------------YKLMGNSLLPIRWMSPEAIMYGKFSI  205 (283)
T ss_pred             ------------------------------------------------------eeeccCccCCccccCHHHHhcCCCCc
Confidence                                                                  00001234567899999998888999


Q ss_pred             cccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          512 SSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       512 ~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ++|||||||++|||++ +   |...... .....+.....++.....++.+.+|+..||+++|.+||++++|+..
T Consensus       206 ~~Dv~slG~~l~el~~~g~~p~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~  279 (283)
T cd05091         206 DSDIWSYGVVLWEVFSYGLQPYCGYSNQ-DVIEMIRNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSR  279 (283)
T ss_pred             chhHHHHHHHHHHHHcCCCCCCCCCCHH-HHHHHHHcCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHH
Confidence            9999999999999997 3   3332222 2233333333333334556778899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.1e-27  Score=272.60  Aligned_cols=277  Identities=15%  Similarity=0.124  Sum_probs=186.3

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...+    .+..++.|.........  .......+...+....||+++.++.....+...+         
T Consensus        11 ~g~~g~vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~---------   77 (316)
T cd05574          11 KGDVGRVFLVRLKG----TGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLC---------   77 (316)
T ss_pred             CCccEEEEEEEEcC----CCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEE---------
Confidence            35779999998743    24445555543332221  2233444556777888999998765544322222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                             ++|||+.|++|.+++... +..+++..++.++.||+.||+|||++||+|+||||+||+++.++.++++|||++
T Consensus        78 -------lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~  150 (316)
T cd05574          78 -------LVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLS  150 (316)
T ss_pred             -------EEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchh
Confidence                   389999999999999753 356788899999999999999999999999999999999999999999999998


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      ...........   ....                                   ..+..+...+...              
T Consensus       151 ~~~~~~~~~~~---~~~~-----------------------------------~~~~~~~~~~~~~--------------  178 (316)
T cd05574         151 KQSDVEPPPVS---KALR-----------------------------------KGSRRSSVNSIPS--------------  178 (316)
T ss_pred             hcccccccccc---cccc-----------------------------------cccccccccccch--------------
Confidence            76542110000   0000                                   0000000000000              


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                            ..............+||..|+|||.+.+..++.++|||||||++|+|+++   |....
T Consensus       179 ----------------------~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~  236 (316)
T cd05574         179 ----------------------ETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSN  236 (316)
T ss_pred             ----------------------hhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCc
Confidence                                  00000011112256899999999999998899999999999999999986   43333


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC----HHHHhhhhhhhhhhc
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT----TREILQSEVTNEFQE  590 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps----a~eiL~~~~~~~~~~  590 (1092)
                      ...............+.....++.+.+|+.+||+.+|.+||+    +.++|+||||+...-
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~~~~  297 (316)
T cd05574         237 RDETFSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVNW  297 (316)
T ss_pred             hHHHHHHHhcCCccCCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcCchhhcCCh
Confidence            333333333322223333335788999999999999999999    999999999987643

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.95  E-value=6.9e-28  Score=265.17  Aligned_cols=242  Identities=18%  Similarity=0.178  Sum_probs=172.5

Q ss_pred             cccceeeeCCCCCcccccccccccccccc-ccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVT-TTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||++....    .+..++.|.... ............+...+...+|||++.+.........        ..+  
T Consensus        11 g~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~--------~~~--   76 (257)
T cd08223          11 GSYGEVSLVRHRT----DGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDG--------LLY--   76 (257)
T ss_pred             CCCeEEEEEEEcC----CCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCC--------EEE--
Confidence            3678888777522    123333333211 1111222234445566778889998875443211110        011  


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .+|||+.|++|.+++... +..++..+++.++.||+.||+|||++||+||||||+||+++.++.++++|||+++.
T Consensus        77 -----lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~  151 (257)
T cd08223          77 -----IVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARV  151 (257)
T ss_pred             -----EEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEE
Confidence                 379999999999999763 44578889999999999999999999999999999999999999999999998865


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       152 ~~~~~---------------------------------------------------------------------------  156 (257)
T cd08223         152 LENQC---------------------------------------------------------------------------  156 (257)
T ss_pred             ecccC---------------------------------------------------------------------------
Confidence            43100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                  .......|++.|+|||.+.+..++.++|||||||++|||+++   |......
T Consensus       157 ----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~  208 (257)
T cd08223         157 ----------------------------DMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMN  208 (257)
T ss_pred             ----------------------------CccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH
Confidence                                        000134578889999999998899999999999999999986   4433322


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .... .+....+++.....++.+.+|+.+||.++|.+||++.++++||||
T Consensus       209 ~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  257 (257)
T cd08223         209 SLVY-RIIEGKLPPMPKDYSPELGELIATMLSKRPEKRPSVKSILRQPYI  257 (257)
T ss_pred             HHHH-HHHhcCCCCCccccCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            2222 222233333334567889999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.95  E-value=8.9e-28  Score=268.67  Aligned_cols=244  Identities=17%  Similarity=0.209  Sum_probs=175.1

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||++....    .+..++.|+...... ........++..++...+|||++.++.........+          
T Consensus        10 ~g~~~~v~~~~~~~----~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~----------   75 (286)
T cd07832          10 EGAHGIVFKAKDRE----TGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFV----------   75 (286)
T ss_pred             cCCCcEEEEEEECC----CCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeE----------
Confidence            35789999987522    244555555433222 222233445556677778999998776654322222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+|+|+ |++|.+++......++..+++.++.||+.+|.|||++||+|+||||+||+++.++.++++|||++..
T Consensus        76 ------~v~e~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~  148 (286)
T cd07832          76 ------LVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARL  148 (286)
T ss_pred             ------EEeccc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeeccc
Confidence                  379999 9999999977666788889999999999999999999999999999999999999999999998866


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       149 ~~~~~---------------------------------------------------------------------------  153 (286)
T cd07832         149 FSEEE---------------------------------------------------------------------------  153 (286)
T ss_pred             ccCCC---------------------------------------------------------------------------
Confidence            43100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                 ........|+.+|+|||.+.+. .++.++|||||||++|||+++   |.+..+
T Consensus       154 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~  206 (286)
T cd07832         154 ---------------------------PRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEND  206 (286)
T ss_pred             ---------------------------CCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCH
Confidence                                       0011134688999999998764 468999999999999999986   333322


Q ss_pred             HHHHHHhccc---c-----------------CC--------CCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          535 LAAAMSDLRD---R-----------------IL--------PPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       535 ~~~~~~~~~~---~-----------------~~--------p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      .......+..   .                 ..        ...+...+..+.+|+.+||.++|.+||+++++|.||||.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         207 IEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             HHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhCcCcC
Confidence            2221111110   0                 00        011234457788999999999999999999999999984

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.95  E-value=7.5e-28  Score=270.14  Aligned_cols=245  Identities=16%  Similarity=0.183  Sum_probs=178.6

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchh--hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD--AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      ..+|.|.||++....    .+..++.|+.........  ......+..++...+|++++........+...+        
T Consensus         9 g~G~~g~vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~--------   76 (285)
T cd05632           9 GKGGFGEVCACQVRA----TGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALC--------   76 (285)
T ss_pred             ecCCCeEEEEEEECC----CCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEE--------
Confidence            346789999987632    244555554422211111  122345667788889999987665554443333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                              .+|||+.|++|.+++...+ ..++...+..++.||+.||+|||++||+||||||+||+++..+.+|++|||+
T Consensus        77 --------lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~  148 (285)
T cd05632          77 --------LVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGL  148 (285)
T ss_pred             --------EEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCc
Confidence                    3899999999999986543 3578889999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      +......                                                                         
T Consensus       149 ~~~~~~~-------------------------------------------------------------------------  155 (285)
T cd05632         149 AVKIPEG-------------------------------------------------------------------------  155 (285)
T ss_pred             ceecCCC-------------------------------------------------------------------------
Confidence            7553200                                                                         


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                     .......|+..|+|||.+.+..++.++|||||||++|||+++   |...
T Consensus       156 -------------------------------~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~  204 (285)
T cd05632         156 -------------------------------ESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGR  204 (285)
T ss_pred             -------------------------------CcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence                                           000134688999999999998999999999999999999986   4332


Q ss_pred             HHHH---HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          533 RALA---AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       533 ~~~~---~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      ....   .....+.. ..+......++.+.+|+.+||.++|++||+     +.+++.|+||...
T Consensus       205 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~  267 (285)
T cd05632         205 KEKVKREEVDRRVLE-TEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNM  267 (285)
T ss_pred             CHHHHHHHHHHhhhc-cccccCccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHcChhhhcC
Confidence            2211   11111111 111222345678899999999999999999     8899999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=1.5e-25  Score=285.80  Aligned_cols=292  Identities=17%  Similarity=0.208  Sum_probs=222.7

Q ss_pred             cchhhhhhccccccCCCCc--EEeEcCCeEEEEEcccceEEee---EEeeeecCCCCCEEEEEEcC-CCCEEEEEeCCCc
Q 001366          729 RENLFLAQQDQEIQNPTDR--LGAFFDGLCKYARYSKFEVQGM---LRTGEFNNSANVICSISFDR-DEDHFAAAGVSKK  802 (1092)
Q Consensus       729 ~~~~~~~~~~~~~~~~~~~--l~~~~D~~~k~w~~~~~~~~~~---l~~~~l~~h~~~V~sl~fsp-dg~~latgg~D~~  802 (1092)
                      |.+.+.++.    +++++.  +++..|+.+++|+.......+.   .....+ .+...|.+++|++ ++.+||+|+.|++
T Consensus       482 ~~~~V~~i~----fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        482 SSNLVCAIG----FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             CCCcEEEEE----ECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCe
Confidence            444444443    345543  4778999999999753211110   001112 2346899999987 4789999999999


Q ss_pred             EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecC
Q 001366          803 IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQV  882 (1092)
Q Consensus       803 I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~  882 (1092)
                      |+|||+.+.       .......+|...|++++|+|.++.+|+||+.||+|++||+.++..+..+..+ ..|.++.|++.
T Consensus       557 v~lWd~~~~-------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~  628 (793)
T PLN00181        557 VQVWDVARS-------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSE  628 (793)
T ss_pred             EEEEECCCC-------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCC
Confidence            999998651       2223345789999999999855889999999999999999999998888754 67999999775


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCc-eeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCC-----CcceEEecC
Q 001366          883 HPTKLASGSDDCSVKLWNINEKN-SLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA-----RAPWCVLAG  955 (1092)
Q Consensus       883 ~~~~laSgs~Dg~I~iWDl~~~~-~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~-----~~~~~~l~~  955 (1092)
                      ++..|++|+.|++|++||+++.+ .+.++. |...|.++.|. ++ .+|++++.|+.|++||++..     ..++..+.+
T Consensus       629 ~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g  706 (793)
T PLN00181        629 SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMG  706 (793)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcC
Confidence            78999999999999999998765 455554 67789999997 44 38999999999999999853     235678899


Q ss_pred             CCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCC---CC--ceeEEEcCCCCCeEEEEEecCCCEEEEEecCCc
Q 001366          956 HEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPS---TN--ACSLTFSGHTNEKNFVGLSTADGYIACGSESNE 1029 (1092)
Q Consensus       956 H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~---~~--~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~ 1029 (1092)
                      |...+.+++|+ ++.+|++|+.|++|++|+..........   ..  ........|...|++++|+|++.+|++|+.||.
T Consensus       707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~  786 (793)
T PLN00181        707 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN  786 (793)
T ss_pred             CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence            99999999998 6789999999999999998643211000   00  001122346677999999999999999999999


Q ss_pred             EEEEeC
Q 001366         1030 VYAYHR 1035 (1092)
Q Consensus      1030 I~Iwd~ 1035 (1092)
                      |+||++
T Consensus       787 I~i~~~  792 (793)
T PLN00181        787 IKILEM  792 (793)
T ss_pred             EEEEec
Confidence            999985

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.3e-26  Score=238.61  Aligned_cols=273  Identities=16%  Similarity=0.288  Sum_probs=220.7

Q ss_pred             CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEE
Q 001366          777 NSANVICSISFDR-DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKL  855 (1092)
Q Consensus       777 ~h~~~V~sl~fsp-dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~I  855 (1092)
                      ...+.|.+|+|+| ...++++|++|++|++|++....     ...+.....|.++|.+++|+.+ +..+++|+.|+.+++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----~~~~ka~~~~~~PvL~v~Wsdd-gskVf~g~~Dk~~k~   98 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----QLVPKAQQSHDGPVLDVCWSDD-GSKVFSGGCDKQAKL   98 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCC-----cccchhhhccCCCeEEEEEccC-CceEEeeccCCceEE
Confidence            5677899999999 55677799999999999997521     2233455668999999999998 899999999999999


Q ss_pred             EECCCCceEEEeeccCccEEEEEEecCCCC--EEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEE
Q 001366          856 WDACTGQTVSHYIEHEKRAWSVDFSQVHPT--KLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       856 WD~~tg~~i~~l~~h~~~V~sv~fsp~~~~--~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      ||+.+++. ..+..|..+|.++.|-+ ...  .|+|||+|.+||+||+++..++.++..+..+.++..--   -+++++.
T Consensus        99 wDL~S~Q~-~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~---pm~vVat  173 (347)
T KOG0647|consen   99 WDLASGQV-SQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY---PMAVVAT  173 (347)
T ss_pred             EEccCCCe-eeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC---ceeEEEe
Confidence            99999954 45677999999999987 444  79999999999999999999999999999999887652   3788999


Q ss_pred             CCCeEEEEEcCCCCcceEEe-cCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCC-----
Q 001366          934 ADYRTYCYDLRNARAPWCVL-AGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHT----- 1006 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l-~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~----- 1006 (1092)
                      .+..|.+|+++++....... ..-+-.++||+.. +.+..+.|+..|.+-|..+..+.+.      .-.+|+.|.     
T Consensus       174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~------~nFtFkCHR~~~~~  247 (347)
T KOG0647|consen  174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK------DNFTFKCHRSTNSV  247 (347)
T ss_pred             cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc------CceeEEEeccCCCC
Confidence            99999999998764322221 2234467888876 6666789999999999999864322      223444444     


Q ss_pred             ----CCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEE
Q 001366         1007 ----NEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAA 1080 (1092)
Q Consensus      1007 ----~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasg 1080 (1092)
                          ..|++|+|+|.-+.|++.+.||++.+||....+.+.+.              ..|..+|++.+|+.+|.++|.|
T Consensus       248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s--------------~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS--------------ETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc--------------CcCCCccceeEecCCCCEEEEE
Confidence                24788999999999999999999999998766655543              4578899999999999999865

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.95  E-value=1.1e-27  Score=265.97  Aligned_cols=241  Identities=13%  Similarity=0.089  Sum_probs=169.7

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|.||+|.....-. ....++.|+..............++...+...+|||++.+......+...+            
T Consensus        16 G~fg~V~~~~~~~~~~-~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~------------   82 (266)
T cd05064          16 GRFGELCRGCLKLPSK-RELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMM------------   82 (266)
T ss_pred             cCCCeEEEEEEecCCC-ceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcE------------
Confidence            3679999986421111 123344444332222222333455666777789999998766544332222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          .+|||+.|++|.+++......++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|||.+....
T Consensus        83 ----lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~  158 (266)
T cd05064          83 ----IVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDK  158 (266)
T ss_pred             ----EEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCccccccc
Confidence                3899999999999998765567888999999999999999999999999999999999999999999999764422


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ....                                                                            
T Consensus       159 ~~~~----------------------------------------------------------------------------  162 (266)
T cd05064         159 SEAI----------------------------------------------------------------------------  162 (266)
T ss_pred             ccch----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERALA  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~  536 (1092)
                                                .......++..|+|||.+.+..++.++|||||||++|||++ +   |.......
T Consensus       163 --------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~  216 (266)
T cd05064         163 --------------------------YTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQD  216 (266)
T ss_pred             --------------------------hcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH
Confidence                                      00001234567999999999999999999999999999775 4   33222221


Q ss_pred             HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          537 AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                       ....+.....++.....++.+.+++..||+++|.+||++.+|++
T Consensus       217 -~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~  260 (266)
T cd05064         217 -VIKAVEDGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHS  260 (266)
T ss_pred             -HHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHH
Confidence             22222333333344455678899999999999999999999976

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.95  E-value=1.2e-27  Score=262.68  Aligned_cols=240  Identities=15%  Similarity=0.143  Sum_probs=169.7

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|.||++....    .+..++.|+...............+..++....|||++.+......+...+           
T Consensus         5 ~g~~g~vy~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   69 (252)
T cd05084           5 RGNFGEVFSGRLRA----DNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIY-----------   69 (252)
T ss_pred             cccCccEEEEEEec----CCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeE-----------
Confidence            46789999987632    234445544322221222334455666788889999998766544332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|||+.|++|.+++...+..++..+++.++.||+.||.|||++||+||||||+||+++.++.+|++|||+++..
T Consensus        70 -----lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  144 (252)
T cd05084          70 -----IVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREE  144 (252)
T ss_pred             -----EEEeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCccc
Confidence                 389999999999999776666788899999999999999999999999999999999999999999999987653


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      .+....                                                                          
T Consensus       145 ~~~~~~--------------------------------------------------------------------------  150 (252)
T cd05084         145 EDGVYA--------------------------------------------------------------------------  150 (252)
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            310000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                 ........+..|+|||.+.++.++.++|||||||++|||++ +   |..... 
T Consensus       151 ---------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~-  202 (252)
T cd05084         151 ---------------------------STGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN-  202 (252)
T ss_pred             ---------------------------ccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH-
Confidence                                       00000112345999999999889999999999999999996 4   222111 


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ......+.....++.....++.+.+|+.+||+++|++|||+.++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  248 (252)
T cd05084         203 QQTREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQ  248 (252)
T ss_pred             HHHHHHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            1122222222222233344678899999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.95  E-value=9e-28  Score=271.91  Aligned_cols=245  Identities=13%  Similarity=0.048  Sum_probs=167.9

Q ss_pred             ccccceeeeCCCCCcc------------ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          220 LKGKGIVCRGPPLNAF------------KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      .+|.|+||++...+..            ...+..++.|+............-.++..++...+|||++.++.....+...
T Consensus        15 ~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   94 (304)
T cd05096          15 EGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPL   94 (304)
T ss_pred             ccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEecCCce
Confidence            3478999998653311            1112234555443222222223344567778888999999877665433332


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC------------------CCCCHHHHHHHHHHHHHHHHHhhhcC
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG------------------HKGKRIECLYIFRQIVALVDYHHTQG  349 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~------------------~~~~~~~~~~i~~qil~~l~~lHs~g  349 (1092)
                      +                .+|||+.|++|.++|....                  ..++..+++.|+.||+.||.|||++|
T Consensus        95 ~----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~  158 (304)
T cd05096          95 C----------------MITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN  158 (304)
T ss_pred             E----------------EEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCC
Confidence            2                3899999999999996532                  23455678899999999999999999


Q ss_pred             ccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccc
Q 001366          350 VTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSL  429 (1092)
Q Consensus       350 IvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (1092)
                      |+||||||+|||++.++.+|++|||+++.+.....                                             
T Consensus       159 ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~---------------------------------------------  193 (304)
T cd05096         159 FVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDY---------------------------------------------  193 (304)
T ss_pred             ccccCcchhheEEcCCccEEECCCccceecccCce---------------------------------------------
Confidence            99999999999999999999999999876431000                                             


Q ss_pred             ccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC
Q 001366          430 FPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC  509 (1092)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~  509 (1092)
                                                                              ........++..|+|||++.++.+
T Consensus       194 --------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~  217 (304)
T cd05096         194 --------------------------------------------------------YRIQGRAVLPIRWMAWECILMGKF  217 (304)
T ss_pred             --------------------------------------------------------eEecCcCCCCccccCHHHHhcCCC
Confidence                                                                    000012345677999999998899


Q ss_pred             CccccchhhhHHHHHHcCC-----CCcHHHHH--H-HHHhcc---ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHH
Q 001366          510 TTSSNIYSLGVLFFELFGR-----FDSERALA--A-AMSDLR---DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTRE  578 (1092)
Q Consensus       510 t~~sDIwSLGvll~ell~~-----f~~~~~~~--~-~~~~~~---~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e  578 (1092)
                      +.++|||||||++|||+++     |.......  . .....+   ....+......++.+.+|+.+||..+|.+|||+.+
T Consensus       218 ~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~  297 (304)
T cd05096         218 TTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSD  297 (304)
T ss_pred             CchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHH
Confidence            9999999999999999852     33221111  1 111111   11112223345678899999999999999999999


Q ss_pred             Hhh
Q 001366          579 ILQ  581 (1092)
Q Consensus       579 iL~  581 (1092)
                      |.+
T Consensus       298 i~~  300 (304)
T cd05096         298 IHA  300 (304)
T ss_pred             HHH
Confidence            954

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.95  E-value=1.5e-27  Score=268.30  Aligned_cols=250  Identities=14%  Similarity=0.132  Sum_probs=177.8

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ++.|.||+|...+    .+..++.|+....+.. ....-.++...+...+|||++.+.+....+...+   
T Consensus        14 y~i~~~lg~g~~g~vy~~~~~~----~~~~~~~k~~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~---   85 (292)
T cd06644          14 WEIIGELGDGAFGKVYKAKNKE----TGALAAAKVIETKSEE-ELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLW---   85 (292)
T ss_pred             hhhhheecCCCCeEEEEEEECC----CCceEEEEEeccCCHH-HHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEE---
Confidence            4444444  4789999997632    2344555554322211 1222334555677889999998766544333222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   ++|+|++|++|..++......++...++.++.||+.+|+|||++||+||||||+||+++.++.+||+
T Consensus        86 -------------lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~  152 (292)
T cd06644          86 -------------IMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLA  152 (292)
T ss_pred             -------------EEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEc
Confidence                         3899999999999987665668888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||++.......                                                                    
T Consensus       153 dfg~~~~~~~~~--------------------------------------------------------------------  164 (292)
T cd06644         153 DFGVSAKNVKTL--------------------------------------------------------------------  164 (292)
T ss_pred             cCccceeccccc--------------------------------------------------------------------
Confidence            999875422000                                                                    


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-----CCCCCccccchhhhHHHHHHc
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-----GGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-----~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                         .......+++.|+|||.+.     ...++.++|||||||++|||+
T Consensus       165 -----------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~  209 (292)
T cd06644         165 -----------------------------------QRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA  209 (292)
T ss_pred             -----------------------------------cccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHh
Confidence                                               0001345778899999985     345788999999999999999


Q ss_pred             CCCC---cHHHHHHHHHhccccCCC--CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GRFD---SERALAAAMSDLRDRILP--PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~f~---~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ++..   ............ ....|  +.....+.++.+|+.+||..+|++||++.++++||||...
T Consensus       210 ~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  275 (292)
T cd06644         210 QIEPPHHELNPMRVLLKIA-KSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEHPFVSSV  275 (292)
T ss_pred             cCCCCCccccHHHHHHHHh-cCCCccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccc
Confidence            8632   222222222222 11111  1223456789999999999999999999999999999764

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.95  E-value=4.2e-28  Score=272.25  Aligned_cols=244  Identities=16%  Similarity=0.206  Sum_probs=174.9

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++....    .+..++.|.........  .......+..++....|++++.+......+...+         
T Consensus        10 ~G~~g~v~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~---------   76 (285)
T cd05630          10 KGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALC---------   76 (285)
T ss_pred             cCCCeEEEEEEEcC----CCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEE---------
Confidence            46789999887632    24455554432211111  1122345666788889999987655544333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                             .+|+|+.|++|.+++...+ ..++..+++.++.|++.||+|||++||+||||||+||+++.++.++++|||++
T Consensus        77 -------lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~  149 (285)
T cd05630          77 -------LVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLA  149 (285)
T ss_pred             -------EEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccce
Confidence                   3899999999999995433 35778899999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      ......                                                                          
T Consensus       150 ~~~~~~--------------------------------------------------------------------------  155 (285)
T cd05630         150 VHVPEG--------------------------------------------------------------------------  155 (285)
T ss_pred             eecCCC--------------------------------------------------------------------------
Confidence            542200                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    .......||..|+|||.+.+..++.++|||||||++|||+++   |....
T Consensus       156 ------------------------------~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~  205 (285)
T cd05630         156 ------------------------------QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRK  205 (285)
T ss_pred             ------------------------------ccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCC
Confidence                                          000134688899999999999999999999999999999986   33211


Q ss_pred             H---HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          534 A---LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       534 ~---~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      .   ......... ..........++.+.+|+..||++||.+|||     +.|+++||||.+.
T Consensus       206 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h~~~~~~  267 (285)
T cd05630         206 KKIKREEVERLVK-EVQEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQI  267 (285)
T ss_pred             ccchHHHHHhhhh-hhhhhcCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHcChhhhcc
Confidence            1   111111111 1111122345678899999999999999999     8999999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.95  E-value=1.1e-27  Score=265.60  Aligned_cols=245  Identities=18%  Similarity=0.112  Sum_probs=172.0

Q ss_pred             hhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          217 KTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       217 ~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      +...+|.|+||+|...+    ++..++.|.... ....+...-.++..++...+|+|++.+......+...+        
T Consensus        15 ~lg~g~~g~v~~~~~~~----~~~~v~~k~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~--------   81 (268)
T cd06624          15 VLGKGTYGIVYAARDLS----TQVRIAIKEIPE-RDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFK--------   81 (268)
T ss_pred             EEecCCceEEEEeEecC----CCcEEEEEEecC-CCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEE--------
Confidence            44556889999997532    234444443321 11222233445566777889999998766544332222        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc-CCcEEEecc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKG--KRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ-SNQVKYIGP  373 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~--~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~-~~~vkl~Df  373 (1092)
                              .++||+.|++|.+++......+  +...++.++.||+.||.|||++||+||||||+||+++. .+.+|++||
T Consensus        82 --------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~df  153 (268)
T cd06624          82 --------IFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDF  153 (268)
T ss_pred             --------EEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecc
Confidence                    3799999999999997653334  77788899999999999999999999999999999976 678999999


Q ss_pred             cccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCC
Q 001366          374 IIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPH  453 (1092)
Q Consensus       374 g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  453 (1092)
                      |++.......                                                                      
T Consensus       154 g~~~~~~~~~----------------------------------------------------------------------  163 (268)
T cd06624         154 GTSKRLAGIN----------------------------------------------------------------------  163 (268)
T ss_pred             hhheecccCC----------------------------------------------------------------------
Confidence            9876533100                                                                      


Q ss_pred             CCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC--CCccccchhhhHHHHHHcCCCCc
Q 001366          454 SHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV--CTTSSNIYSLGVLFFELFGRFDS  531 (1092)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~--~t~~sDIwSLGvll~ell~~f~~  531 (1092)
                                                       .......|++.|+|||.+.+..  ++.++|+|||||++|+|+++..+
T Consensus       164 ---------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p  210 (268)
T cd06624         164 ---------------------------------PCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPP  210 (268)
T ss_pred             ---------------------------------CccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCC
Confidence                                             0001234678899999987643  78999999999999999986322


Q ss_pred             H---H-HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          532 E---R-ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       532 ~---~-~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .   . ..............+.......+++.+|+.+||+++|.+|||+.+++.||||
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  268 (268)
T cd06624         211 FIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQDPFL  268 (268)
T ss_pred             CccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHhCCCC
Confidence            2   1 1111111111122222223456788999999999999999999999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=6.1e-26  Score=242.79  Aligned_cols=291  Identities=13%  Similarity=0.200  Sum_probs=232.3

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .|..|+..|++++.+|+.+++||||.|....||+..+.       .......+|+..|+|+.|+.+ +.+||||+.+|.|
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-------e~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v  130 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-------EFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKV  130 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-------cceeEecCCCCceEEEEEccC-ceEEEecCCCccE
Confidence            46789999999999999999999999999999998762       244556789999999999998 9999999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      +||+..++.....+..--..+.-+.|+| .+.+|+.|+.||.+-+|.+.++...+.+. |..+++|-.|.|+|+ .+++|
T Consensus       131 ~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-r~~tg  208 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-RILTG  208 (399)
T ss_pred             EEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc-eEEEE
Confidence            9999999998888875566788899999 88999999999999999999876666666 678899999999996 89999


Q ss_pred             ECCCeEEEEEcCCCCcceEEec-CCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeE
Q 001366          933 SADYRTYCYDLRNARAPWCVLA-GHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN 1010 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~-~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~ 1010 (1092)
                      ..||+|++||..++.+ +..+. .......++.++ .+..+++|+.++.+++-+..+++-.....+........+...+.
T Consensus       209 y~dgti~~Wn~ktg~p-~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e  287 (399)
T KOG0296|consen  209 YDDGTIIVWNPKTGQP-LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE  287 (399)
T ss_pred             ecCceEEEEecCCCce-eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence            9999999999999864 44443 334456778877 67788889999988888776432111111000111113445555


Q ss_pred             EEEE---ecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEE
Q 001366         1011 FVGL---STADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIK 1087 (1092)
Q Consensus      1011 ~v~~---spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~ 1087 (1092)
                      +|.+   +..=.+.|||+-||+|.|||.....+...               -.|...|..+.|-+ ..+|+|++.||.|+
T Consensus       288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~---------------c~he~~V~~l~w~~-t~~l~t~c~~g~v~  351 (399)
T KOG0296|consen  288 SVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI---------------CEHEDGVTKLKWLN-TDYLLTACANGKVR  351 (399)
T ss_pred             hhhhcccccccchhhcccccceEEEEecccchhhee---------------ccCCCceEEEEEcC-cchheeeccCceEE
Confidence            5544   44556889999999999999876544322               24677899999999 88999999999999


Q ss_pred             EEEc
Q 001366         1088 VLQM 1091 (1092)
Q Consensus      1088 vW~l 1091 (1092)
                      .||.
T Consensus       352 ~wDa  355 (399)
T KOG0296|consen  352 QWDA  355 (399)
T ss_pred             eeec
Confidence            9984

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.95  E-value=5.8e-28  Score=270.20  Aligned_cols=242  Identities=16%  Similarity=0.191  Sum_probs=170.6

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||+|....    .+..++.|+..... .........++..++....|||++.+.+....+...+          
T Consensus        10 ~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~----------   75 (285)
T cd07861          10 EGTYGVVYKGRNKK----TGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLY----------   75 (285)
T ss_pred             ccCceEEEEEEECC----CCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEE----------
Confidence            35679999997521    23445554432211 1112233445566777888999998776654332222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNAR--GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~--~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                            .+|+|+. ++|.+++...  +..++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|||++
T Consensus        76 ------~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~  148 (285)
T cd07861          76 ------LIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLA  148 (285)
T ss_pred             ------EEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccce
Confidence                  3799998 5899998643  246788899999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +....+                                                                          
T Consensus       149 ~~~~~~--------------------------------------------------------------------------  154 (285)
T cd07861         149 RAFGIP--------------------------------------------------------------------------  154 (285)
T ss_pred             eecCCC--------------------------------------------------------------------------
Confidence            653310                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                   ........++++|+|||.+.+ ..++.++|||||||++|||+++   |...
T Consensus       155 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~  205 (285)
T cd07861         155 -----------------------------VRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGD  205 (285)
T ss_pred             -----------------------------cccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence                                         000113356888999999876 4578999999999999999986   4332


Q ss_pred             HHHHHHHHhccc---------------------------cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          533 RALAAAMSDLRD---------------------------RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       533 ~~~~~~~~~~~~---------------------------~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ............                           ..+.......++++.+|+.+||++||.+|||+.+|+.||||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         206 SEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             CHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcCCCC
Confidence            222211111100                           00011123457888999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.95  E-value=5.7e-28  Score=274.83  Aligned_cols=248  Identities=17%  Similarity=0.164  Sum_probs=165.6

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ...+|.|.||++...+...  +..++.|......   ......++..++...+|||++.+...........         
T Consensus         9 lG~G~~g~Vy~~~~~~~~~--~~~~a~k~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~---------   74 (317)
T cd07867           9 VGRGTYGHVYKAKRKDGKD--EKEYALKQIEGTG---ISMSACREIALLRELKHPNVIALQKVFLSHSDRK---------   74 (317)
T ss_pred             eccCCCeeEEEEEecCCCc--cceEEEEEecCCC---CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCe---------
Confidence            4456889999998643211  2344444332211   1223456677888899999997665543211111         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhc--------CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE----ccC
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNAR--------GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL----LQS  365 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~--------~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill----~~~  365 (1092)
                      .     ..+|+|+++ +|.+++...        ...++...++.++.||+.||.|||++||+||||||+|||+    ...
T Consensus        75 ~-----~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~  148 (317)
T cd07867          75 V-----WLLFDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPER  148 (317)
T ss_pred             E-----EEEEeeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCC
Confidence            0     136788765 888887532        1246777899999999999999999999999999999999    456


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++....+..                                                             
T Consensus       149 ~~~kl~DfG~a~~~~~~~~-------------------------------------------------------------  167 (317)
T cd07867         149 GRVKIADMGFARLFNSPLK-------------------------------------------------------------  167 (317)
T ss_pred             CcEEEeeccceeccCCCcc-------------------------------------------------------------
Confidence            7899999999876431100                                                             


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~e  524 (1092)
                                                             +........||+.|+|||.+.+ ..++.++|||||||++||
T Consensus       168 ---------------------------------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~e  208 (317)
T cd07867         168 ---------------------------------------PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAE  208 (317)
T ss_pred             ---------------------------------------cccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHH
Confidence                                                   0001124578999999999987 458999999999999999


Q ss_pred             HcCC---CCcHHH------------HHHHHHh-----------cc-------------ccCC---------CCCCCCCCh
Q 001366          525 LFGR---FDSERA------------LAAAMSD-----------LR-------------DRIL---------PPSFLSENP  556 (1092)
Q Consensus       525 ll~~---f~~~~~------------~~~~~~~-----------~~-------------~~~~---------p~~~~~~~~  556 (1092)
                      |+++   |.....            .......           .+             ....         +........
T Consensus       209 l~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (317)
T cd07867         209 LLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDS  288 (317)
T ss_pred             HHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchhhhhhhcccccCCchhhhhhhcccCCCCh
Confidence            9996   321110            0000000           00             0000         000112345


Q ss_pred             hHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          557 KEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       557 ~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .+.+|+.+||..||.+|||+.|+|+||||
T Consensus       289 ~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         289 KVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             HHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            67799999999999999999999999997

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.95  E-value=3.7e-28  Score=301.68  Aligned_cols=255  Identities=15%  Similarity=0.098  Sum_probs=181.9

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+...+  +|+|.||++....    .+..++.|+....... ........+..++...+||||+.+++........  
T Consensus        14 ~YeIl~kLG~GgFGtVYLAkdk~----tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~--   87 (1021)
T PTZ00266         14 EYEVIKKIGNGRFGEVFLVKHKR----TQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQ--   87 (1021)
T ss_pred             CEEEEEEEecCCCeEEEEEEECC----CCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCC--
Confidence            45555544  4789999987632    2444555544322222 2233445677788889999999877654322111  


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhhc-------CccccCCCCCC
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNAR---GHKGKRIECLYIFRQIVALVDYHHTQ-------GVTFLDLKPSS  359 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~---~~~~~~~~~~~i~~qil~~l~~lHs~-------gIvHrDLKP~N  359 (1092)
                           ..       .++||||.|++|.++|...   ...++...++.|+.||+.||+|||+.       +||||||||+|
T Consensus        88 -----~l-------yIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeN  155 (1021)
T PTZ00266         88 -----KL-------YILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQN  155 (1021)
T ss_pred             -----EE-------EEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHH
Confidence                 11       1379999999999999653   24578889999999999999999984       49999999999


Q ss_pred             eEEccC-----------------CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcc
Q 001366          360 FKLLQS-----------------NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMN  422 (1092)
Q Consensus       360 ill~~~-----------------~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (1092)
                      |||+..                 ..+||+|||+++.+...                                        
T Consensus       156 ILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~----------------------------------------  195 (1021)
T PTZ00266        156 IFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIE----------------------------------------  195 (1021)
T ss_pred             eEeecCccccccccccccccCCCCceEEccCCcccccccc----------------------------------------
Confidence            999642                 34788888877653200                                        


Q ss_pred             cccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcc
Q 001366          423 FSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPE  502 (1092)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE  502 (1092)
                                                                                      ......+||+.|+|||
T Consensus       196 ----------------------------------------------------------------s~~~s~vGTp~YmAPE  211 (1021)
T PTZ00266        196 ----------------------------------------------------------------SMAHSCVGTPYYWSPE  211 (1021)
T ss_pred             ----------------------------------------------------------------ccccccCCCccccCHH
Confidence                                                                            0001357899999999


Q ss_pred             cccC--CCCCccccchhhhHHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          503 ELSG--GVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       503 ~l~~--~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                      ++.+  ..++.++||||||||||||+++   |.........+..+...+.. .....++.+.+||..||.++|.+||++.
T Consensus       212 vL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~qli~~lk~~p~l-pi~~~S~eL~dLI~~~L~~dPeeRPSa~  290 (1021)
T PTZ00266        212 LLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELKRGPDL-PIKGKSKELNILIKNLLNLSAKERPSAL  290 (1021)
T ss_pred             HHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHHHHHHHhcCCCC-CcCCCCHHHHHHHHHHhcCChhHCcCHH
Confidence            9865  4589999999999999999986   44444444444444433222 2334578899999999999999999999


Q ss_pred             HHhhhhhhhhhhc
Q 001366          578 EILQSEVTNEFQE  590 (1092)
Q Consensus       578 eiL~~~~~~~~~~  590 (1092)
                      ++|+|+||.....
T Consensus       291 QlL~h~~ik~i~~  303 (1021)
T PTZ00266        291 QCLGYQIIKNVGP  303 (1021)
T ss_pred             HHhccHHHhhcCC
Confidence            9999999986543

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.95  E-value=1e-27  Score=270.58  Aligned_cols=245  Identities=14%  Similarity=0.120  Sum_probs=177.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|.||+|...    ..+..++.|....... ........+...+....|||++.+.+....+...+           
T Consensus        30 ~g~~~~v~~~~~~----~~~~~v~ik~~~~~~~-~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~-----------   93 (296)
T cd06654          30 QGASGTVYTAMDV----ATGQEVAIRQMNLQQQ-PKKELIINEILVMRENKNPNIVNYLDSYLVGDELW-----------   93 (296)
T ss_pred             CCCCeEEEEEEEC----CCCcEEEEEEEecCCc-chHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEE-----------
Confidence            3467999999742    1234455543322221 12233444556677889999998776544322222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           ++|+|+.|++|.+++...  .++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++..
T Consensus        94 -----lv~e~~~~~~L~~~~~~~--~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~  166 (296)
T cd06654          94 -----VVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQI  166 (296)
T ss_pred             -----EeecccCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhc
Confidence                 389999999999999654  4677799999999999999999999999999999999999999999999987653


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       167 ~~~~----------------------------------------------------------------------------  170 (296)
T cd06654         167 TPEQ----------------------------------------------------------------------------  170 (296)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            2100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALA  536 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~  536 (1092)
                                                 .......|++.|+|||.+.+..++.++|||||||++|||+++   |.......
T Consensus       171 ---------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~  223 (296)
T cd06654         171 ---------------------------SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR  223 (296)
T ss_pred             ---------------------------cccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                                       000134578889999999988899999999999999999986   43333333


Q ss_pred             HHHHhccccCCC-CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          537 AAMSDLRDRILP-PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       537 ~~~~~~~~~~~p-~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      ...........+ +.....++.+.+|+.+||.++|..||++.+|++||||...+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~~~~~~~~~  278 (296)
T cd06654         224 ALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKP  278 (296)
T ss_pred             hHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHHhhChhhhccCC
Confidence            322222222211 222345678899999999999999999999999999976533

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.95  E-value=1.3e-27  Score=267.03  Aligned_cols=243  Identities=15%  Similarity=0.050  Sum_probs=170.5

Q ss_pred             hccccceeeeCCCC-CccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPL-NAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|.|+||+|... ++... ...++.|+..............++...+....|||++.++........           
T Consensus        16 g~G~~g~vy~~~~~~~~~~~-~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~-----------   83 (279)
T cd05109          16 GSGAFGTVYKGIWIPDGENV-KIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTV-----------   83 (279)
T ss_pred             CCCCCceEEEEEEecCCCcc-ceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCc-----------
Confidence            34578999999742 11111 112344554333333333444555666777789999876544321111           


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                            ..+|+|+++|+|.+++......++..+++.++.||+.||.|||++||+||||||+|||+..++.+|++|||+++
T Consensus        84 ------~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~  157 (279)
T cd05109          84 ------QLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (279)
T ss_pred             ------EEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCcee
Confidence                  13799999999999997765567888999999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+......                                                                        
T Consensus       158 ~~~~~~~~------------------------------------------------------------------------  165 (279)
T cd05109         158 LLDIDETE------------------------------------------------------------------------  165 (279)
T ss_pred             ecccccce------------------------------------------------------------------------
Confidence            64310000                                                                        


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~  533 (1092)
                                                   .......++..|+|||.+.+..++.++|||||||+||||++ +   |....
T Consensus       166 -----------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  216 (279)
T cd05109         166 -----------------------------YHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP  216 (279)
T ss_pred             -----------------------------eecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC
Confidence                                         00001123566999999998889999999999999999987 4   32221


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      . ......+.....++.....++.+.+++.+||+.||.+||++.++++
T Consensus       217 ~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~  263 (279)
T cd05109         217 A-REIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVD  263 (279)
T ss_pred             H-HHHHHHHHCCCcCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            1 1122222232333334456788999999999999999999999985

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.95  E-value=5.1e-28  Score=236.45  Aligned_cols=244  Identities=16%  Similarity=0.176  Sum_probs=189.2

Q ss_pred             cccceeeeCCCCCccccccccccc-cccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDT-KAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +-.|.|+||...+    ..+.++. ++....+...-..-+.++.-++...+|.||+.+++...++.-+-           
T Consensus        13 gtygtvfkarn~~----t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkklt-----------   77 (292)
T KOG0662|consen   13 GTYGTVFKARNRE----THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLT-----------   77 (292)
T ss_pred             CcceeeEecccCC----ccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeE-----------
Confidence            3479999999843    4455555 33444444444456788888999999999999888766554433           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+.|||+ .+|..++.+.+..++...++.++.|+++||.|||+++|.||||||.|+||..+|.+|++|||+++.+
T Consensus        78 -----lvfe~cd-qdlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglaraf  151 (292)
T KOG0662|consen   78 -----LVFEFCD-QDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAF  151 (292)
T ss_pred             -----EeHHHhh-HHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhc
Confidence                 2567775 4899999888888999999999999999999999999999999999999999999999999999875


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      +-+.                                                                            
T Consensus       152 gipv----------------------------------------------------------------------------  155 (292)
T KOG0662|consen  152 GIPV----------------------------------------------------------------------------  155 (292)
T ss_pred             CCce----------------------------------------------------------------------------
Confidence            4110                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC----CCcHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR----FDSERA  534 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~----f~~~~~  534 (1092)
                                                 .-++..+-|.||++|.++.| .-|+++.|+||-|||+.||...    |++...
T Consensus       156 ---------------------------rcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dv  208 (292)
T KOG0662|consen  156 ---------------------------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV  208 (292)
T ss_pred             ---------------------------EeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcH
Confidence                                       11123467999999999999 4589999999999999999862    888777


Q ss_pred             HHHHHHhccccCC------C-----------CCC----------CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          535 LAAAMSDLRDRIL------P-----------PSF----------LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       535 ~~~~~~~~~~~~~------p-----------~~~----------~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ..+.+.+.+.--.      |           |.+          +..+..-+++++++|.-+|..|++|++.|+||||.+
T Consensus       209 ddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalqhpyf~d  288 (292)
T KOG0662|consen  209 DDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQHPYFSD  288 (292)
T ss_pred             HHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhcCccccc
Confidence            7777665543211      1           111          223344589999999999999999999999999976


Q ss_pred             h
Q 001366          588 F  588 (1092)
Q Consensus       588 ~  588 (1092)
                      .
T Consensus       289 ~  289 (292)
T KOG0662|consen  289 F  289 (292)
T ss_pred             c
Confidence            4

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.95  E-value=8.3e-28  Score=273.29  Aligned_cols=243  Identities=17%  Similarity=0.111  Sum_probs=180.9

Q ss_pred             hHHHhhhcc-c-cceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK-G-KGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~-g-~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      ++.+.+.|+ | +|.|+.|...+..++     ++|....  +......-.++..++..++|+|++.++.......+.+| 
T Consensus       207 ~l~l~~~LG~G~FG~V~~g~~~~~~~v-----avk~ik~--~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyI-  278 (468)
T KOG0197|consen  207 ELKLIRELGSGQFGEVWLGKWNGSTKV-----AVKTIKE--GSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYI-  278 (468)
T ss_pred             HHHHHHHhcCCccceEEEEEEcCCCcc-----cceEEec--cccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEE-
Confidence            455555555 3 799999999764444     3322211  12222233378888999999999988777665555553 


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     +|||+..|+|.+||+. .+..+...+.+.++.||++|++||+++++|||||...|||++.++.+|
T Consensus       279 ---------------VtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vK  343 (468)
T KOG0197|consen  279 ---------------VTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVK  343 (468)
T ss_pred             ---------------EEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEE
Confidence                           8999999999999986 667888889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+||...+....                                              .+.|              
T Consensus       344 IsDFGLAr~~~d~~Y~----------------------------------------------~~~~--------------  363 (468)
T KOG0197|consen  344 ISDFGLARLIGDDEYT----------------------------------------------ASEG--------------  363 (468)
T ss_pred             EcccccccccCCCcee----------------------------------------------ecCC--------------
Confidence            9999999954321000                                              0000              


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                      +..|          -.|.|||.+..+.++.+||+||+||+||||+|. 
T Consensus       364 --------------------------------~kfP----------IkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G  401 (468)
T KOG0197|consen  364 --------------------------------GKFP----------IKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYG  401 (468)
T ss_pred             --------------------------------CCCC----------ceecCHHHHhhCCcccccceeehhhhHHHHhccC
Confidence                                            0000          127899999999999999999999999999983 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREIL  580 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL  580 (1092)
                        +.+.......+..+.....-|....+++.+-+++..|++.+|++|||++.+.
T Consensus       402 ~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~  455 (468)
T KOG0197|consen  402 RVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLR  455 (468)
T ss_pred             CCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHH
Confidence              3344444455555544443344455688888999999999999999998554

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.95  E-value=7.1e-28  Score=271.40  Aligned_cols=251  Identities=19%  Similarity=0.217  Sum_probs=180.2

Q ss_pred             HHhhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCC
Q 001366          215 FVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTG  294 (1092)
Q Consensus       215 ~~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1092)
                      +.+...+|.|.||++....    .+..++.|.... ...........+...++...|||++...+........       
T Consensus        27 ~~~lg~g~~g~v~~~~~~~----~~~~vaiK~~~~-~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~-------   94 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKH----TGKQVAVKKMDL-RKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDEL-------   94 (292)
T ss_pred             hhcccCCCCeEEEEEEECC----CCCEEEEEEEec-chHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeE-------
Confidence            4455667889999987522    234445543311 1112223344555677788999998766553322211       


Q ss_pred             CCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          295 VPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       295 ~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                               .++|||+.|++|.+++...  .++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|||
T Consensus        95 ---------~lv~e~~~~~~L~~~~~~~--~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg  163 (292)
T cd06658          95 ---------WVVMEFLEGGALTDIVTHT--RMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFG  163 (292)
T ss_pred             ---------EEEEeCCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCc
Confidence                     2489999999999998653  47778999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      ++.......                                                                       
T Consensus       164 ~~~~~~~~~-----------------------------------------------------------------------  172 (292)
T cd06658         164 FCAQVSKEV-----------------------------------------------------------------------  172 (292)
T ss_pred             chhhccccc-----------------------------------------------------------------------
Confidence            876532100                                                                       


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCc
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                      .......|+..|+|||.+.+..++.++|||||||++|||+++   |..
T Consensus       173 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~  220 (292)
T cd06658         173 --------------------------------PKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFN  220 (292)
T ss_pred             --------------------------------ccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                                            000134678899999999888899999999999999999986   333


Q ss_pred             HHHHHHHHHhccccC--CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhccc
Q 001366          532 ERALAAAMSDLRDRI--LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                      ..... .+..+....  ..+.....++.+.+|+.+||.++|.+|||+.++++||||.....+.
T Consensus       221 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~~~~~~~~  282 (292)
T cd06658         221 EPPLQ-AMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQHPFLKLAGPPS  282 (292)
T ss_pred             CCHHH-HHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhhccCCcc
Confidence            22222 222222211  1112224567889999999999999999999999999998765544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.95  E-value=8.6e-28  Score=265.67  Aligned_cols=244  Identities=18%  Similarity=0.188  Sum_probs=179.3

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..++.|.||++...    ..++.++.|...............++...+....|||++.+......+...+          
T Consensus        10 g~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~----------   75 (265)
T cd06605          10 GAGNSGVVSKVLHR----PTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDIS----------   75 (265)
T ss_pred             cCCCCeEEEEEEEc----CCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEE----------
Confidence            34578999998763    2244555555433322233333445556677778999998766654432222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                            ++++|+.|++|.+++......++...+..++.||+.||+|+|+ .||+|+||||+||+++.++.++++|||.+.
T Consensus        76 ------lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~  149 (265)
T cd06605          76 ------ICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSG  149 (265)
T ss_pred             ------EEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccch
Confidence                  3799999999999997764567888899999999999999999 999999999999999999999999999876


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+.....                                                                         
T Consensus       150 ~~~~~~~-------------------------------------------------------------------------  156 (265)
T cd06605         150 QLVNSLA-------------------------------------------------------------------------  156 (265)
T ss_pred             hhHHHHh-------------------------------------------------------------------------
Confidence            5431000                                                                         


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH--
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE--  532 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~--  532 (1092)
                                                      ....++..|+|||.+.+..++.++|||||||++|+|+++   |...  
T Consensus       157 --------------------------------~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~  204 (265)
T cd06605         157 --------------------------------KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPEND  204 (265)
T ss_pred             --------------------------------hcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccc
Confidence                                            013467779999999999999999999999999999985   3222  


Q ss_pred             --HHHHHHHHhccccCCCCCCCC-CChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          533 --RALAAAMSDLRDRILPPSFLS-ENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       533 --~~~~~~~~~~~~~~~p~~~~~-~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                        ......+........|..... .++.+.+|+..||..+|.+||++.+++.||||..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~~~  262 (265)
T cd06605         205 PPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLEHPFIKK  262 (265)
T ss_pred             ccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhhCchhhc
Confidence              122222332222222222222 5788999999999999999999999999999965

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.95  E-value=1.2e-27  Score=266.96  Aligned_cols=241  Identities=16%  Similarity=0.190  Sum_probs=167.0

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||++...    ..+..++.|+..............++...+... .|||++.+......+.       .+..+  
T Consensus        10 g~~~~v~~~~~~----~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~-------~~~~~--   76 (282)
T cd07831          10 GTFSEVLKAQSR----KTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRK-------TGRLA--   76 (282)
T ss_pred             cccceEEEEEEc----CCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCC-------CCcEE--
Confidence            467999999762    224555665543222222233344555555555 5999988665544320       01111  


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|||+.| +|.+++......++..+++.++.||+.||.|||++||+||||||+||+++. +.+|++|||+++.+
T Consensus        77 -----lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~  149 (282)
T cd07831          77 -----LVFELMDM-NLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGI  149 (282)
T ss_pred             -----EEEecCCc-cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEeccccccc
Confidence                 37888875 888888765556788899999999999999999999999999999999999 99999999988654


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       150 ~~~~----------------------------------------------------------------------------  153 (282)
T cd07831         150 YSKP----------------------------------------------------------------------------  153 (282)
T ss_pred             ccCC----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                  ......++.+|+|||.+.. ..++.++|||||||++|||+++   |......
T Consensus       154 ----------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~  205 (282)
T cd07831         154 ----------------------------PYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNEL  205 (282)
T ss_pred             ----------------------------CcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHH
Confidence                                        0012356889999998755 5578999999999999999985   4333221


Q ss_pred             HH--HHHhcccc-----------------CCCC--------CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          536 AA--AMSDLRDR-----------------ILPP--------SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       536 ~~--~~~~~~~~-----------------~~p~--------~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ..  ........                 ..|+        .....+..+.+|+.+||+++|++||++.++|+||||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         206 DQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRHPYF  282 (282)
T ss_pred             HHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhCCCC
Confidence            11  11110000                 0111        112346788999999999999999999999999997

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.95  E-value=7.8e-28  Score=269.18  Aligned_cols=243  Identities=17%  Similarity=0.147  Sum_probs=168.7

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchh--hHhh---hhhhhhhccCCCCCCCccccceecCCCCCCCccCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD--AALK---AAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTG  294 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1092)
                      .++.|.||++...+    .+..++.|+.........  ....   .....++....||+++.+......+...+      
T Consensus         4 ~G~~g~Vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------   73 (279)
T cd05633           4 RGGFGEVYGCRKAD----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLC------   73 (279)
T ss_pred             cCCCeEEEEEEECC----CCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEE------
Confidence            46789999987632    244455544322111111  1111   12223444567888886555443322222      


Q ss_pred             CCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          295 VPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       295 ~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                                .+|||+.|++|.+++...+ .++...+..|+.||+.||+|||++||+||||||+||+++.++.++++|||
T Consensus        74 ----------lv~e~~~~~~L~~~i~~~~-~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg  142 (279)
T cd05633          74 ----------FILDLMNGGDLHYHLSQHG-VFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLG  142 (279)
T ss_pred             ----------EEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCC
Confidence                      3899999999999997665 47777999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      ++.......                                                                       
T Consensus       143 ~~~~~~~~~-----------------------------------------------------------------------  151 (279)
T cd05633         143 LACDFSKKK-----------------------------------------------------------------------  151 (279)
T ss_pred             cceeccccC-----------------------------------------------------------------------
Confidence            876432000                                                                       


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CC
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                        .....||..|+|||.+.+ ..++.++|||||||+||||+++   |.
T Consensus       152 ----------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  197 (279)
T cd05633         152 ----------------------------------PHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFR  197 (279)
T ss_pred             ----------------------------------ccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcC
Confidence                                              002357889999999874 5689999999999999999986   32


Q ss_pred             cHHH-HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          531 SERA-LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       531 ~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      .... .............+......++++.+|+.+||+.||++||     ++.++++||||.+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h~~~~~~  261 (279)
T cd05633         198 QHKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGI  261 (279)
T ss_pred             CCCCcCHHHHHHHhhcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhCccccCC
Confidence            2110 0011111111111112234578899999999999999999     69999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.95  E-value=1.5e-27  Score=266.74  Aligned_cols=240  Identities=18%  Similarity=0.151  Sum_probs=172.1

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..++.|+||++...    ..+..++.|+...............+...+....|||++.+++....+...+          
T Consensus        10 g~g~~~~v~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~----------   75 (279)
T cd06619          10 GHGNGGTVYKAYHL----LTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRIS----------   75 (279)
T ss_pred             ccCCCeEEEEEEEc----CCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEE----------
Confidence            34568999999752    2245555555432211222223334555677789999998776655433222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+|||++|++|..+.     .+++..+..++.||+.||+|||++||+|+||||+||+++.++.+|++|||++..
T Consensus        76 ------lv~e~~~~~~l~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~  144 (279)
T cd06619          76 ------ICTEFMDGGSLDVYR-----KIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQ  144 (279)
T ss_pred             ------EEEecCCCCChHHhh-----cCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCccee
Confidence                  379999999997652     356778899999999999999999999999999999999999999999998865


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +...                                                                            
T Consensus       145 ~~~~----------------------------------------------------------------------------  148 (279)
T cd06619         145 LVNS----------------------------------------------------------------------------  148 (279)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            3310                                                                            


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHHHH---
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERAL---  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~~~---  535 (1092)
                                                   ..+..+||..|+|||.+.+..++.++|+|||||++|||+++..+....   
T Consensus       149 -----------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~  199 (279)
T cd06619         149 -----------------------------IAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKN  199 (279)
T ss_pred             -----------------------------cccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhccc
Confidence                                         001346788899999999988999999999999999999863222110   


Q ss_pred             ------HHHHHhccccCCCC-CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          536 ------AAAMSDLRDRILPP-SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       536 ------~~~~~~~~~~~~p~-~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                            ......+.....+. .....++++.+|+.+||+++|.+||++.|+++||||...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~~~~~~~  259 (279)
T cd06619         200 QGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENLMDHPFIVQY  259 (279)
T ss_pred             ccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHhcCcccccc
Confidence                  11111111111111 122356889999999999999999999999999999764

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.95  E-value=1.6e-27  Score=269.08  Aligned_cols=244  Identities=14%  Similarity=0.122  Sum_probs=177.0

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      ++.|.||+|...    ..++.++.|.+..... ........+...+...+|||++..++........+            
T Consensus        30 g~~g~vy~~~~~----~~~~~v~iK~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~------------   92 (296)
T cd06655          30 GASGTVFTAIDV----ATGQEVAIKQINLQKQ-PKKELIINEILVMKELKNPNIVNFLDSFLVGDELF------------   92 (296)
T ss_pred             CCCeEEEEEEEc----CCCcEEEEEEEecccC-chHHHHHHHHHHHHhcCCCceeeeeeeEecCceEE------------
Confidence            467999998642    1244555554422211 12233344556677889999997665543222222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          .+++|+.|++|.+++...  .++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++...
T Consensus        93 ----lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~  166 (296)
T cd06655          93 ----VVMEYLAGGSLTDVVTET--CMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQIT  166 (296)
T ss_pred             ----EEEEecCCCcHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcc
Confidence                389999999999999754  47788999999999999999999999999999999999999999999999876533


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ...                                                                             
T Consensus       167 ~~~-----------------------------------------------------------------------------  169 (296)
T cd06655         167 PEQ-----------------------------------------------------------------------------  169 (296)
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAA  537 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~  537 (1092)
                                                .......|+..|+|||.+.+..++.++|||||||++|+|+++   |........
T Consensus       170 --------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~  223 (296)
T cd06655         170 --------------------------SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA  223 (296)
T ss_pred             --------------------------ccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                                      000133578889999999988899999999999999999986   433333222


Q ss_pred             HHHhccccC-CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          538 AMSDLRDRI-LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       538 ~~~~~~~~~-~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      ......... ........++.+.+|+.+||..+|.+||++.+|++||||.....
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~~~~~~~~~~  277 (296)
T cd06655         224 LYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLKLAKP  277 (296)
T ss_pred             HHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhhChHhhhccc
Confidence            222221111 11223345788999999999999999999999999999987554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.95  E-value=2.6e-27  Score=264.76  Aligned_cols=244  Identities=12%  Similarity=-0.013  Sum_probs=166.1

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|+||+|.....-......++.|................+...+....|||++..+........             
T Consensus        17 ~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~-------------   83 (279)
T cd05111          17 SGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGASL-------------   83 (279)
T ss_pred             ccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCCcc-------------
Confidence            4578999999752210100112333333211111111222333345667899999986554221111             


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                          ..+++|+.+|+|.+++......+++..++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++..
T Consensus        84 ----~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~  159 (279)
T cd05111          84 ----QLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLL  159 (279)
T ss_pred             ----EEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceec
Confidence                1279999999999999876667888899999999999999999999999999999999999999999999998764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      .....                                                                           
T Consensus       160 ~~~~~---------------------------------------------------------------------------  164 (279)
T cd05111         160 YPDDK---------------------------------------------------------------------------  164 (279)
T ss_pred             cCCCc---------------------------------------------------------------------------
Confidence            31000                                                                           


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                ....+...++..|+|||.+.+..++.++|||||||++|||++ +   |.+....
T Consensus       165 --------------------------~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~  218 (279)
T cd05111         165 --------------------------KYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPH  218 (279)
T ss_pred             --------------------------ccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence                                      000012345667999999998899999999999999999997 4   3332221


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       .....+.....++........+..++.+||..+|..|||+.|+++.
T Consensus       219 -~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~  264 (279)
T cd05111         219 -EVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENVRPTFKELANE  264 (279)
T ss_pred             -HHHHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence             1112222222222222345678899999999999999999999773

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=6.7e-28  Score=246.96  Aligned_cols=244  Identities=16%  Similarity=0.132  Sum_probs=179.9

Q ss_pred             HHHhhhcc-c-cceeeeCCCCCccccccccccccccc----cccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          214 FFVKTTLK-G-KGIVCRGPPLNAFKERRGMIDTKAFV----TTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       214 ~~~~~~~~-g-~Gvv~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      |.+-+-|+ | +|-||.|......+.    ++.||..    ...+...+-  .++.-.-..++||||..++.........
T Consensus        24 feigr~LgkgkFG~vYlarekks~~I----valKVlfKsqi~~~~v~~ql--rREiEIqs~L~hpnilrlY~~fhd~~ri   97 (281)
T KOG0580|consen   24 FEIGRPLGKGKFGNVYLAREKKSLFI----VALKVLFKSQILKTQVEHQL--RREIEIQSHLRHPNILRLYGYFHDSKRI   97 (281)
T ss_pred             ccccccccCCccccEeEeeeccCCcE----EEEeeeeHHHHHHhcchhhh--hheeEeecccCCccHHhhhhheecccee
Confidence            44444443 5 489999998543333    4444431    111222222  2223334566999999766654433333


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      +                +.+||..+|+|...|.. ....+++..+..|++|++.||.|||.++||||||||+|+|++..|
T Consensus        98 y----------------LilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~  161 (281)
T KOG0580|consen   98 Y----------------LILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAG  161 (281)
T ss_pred             E----------------EEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCC
Confidence            3                37999999999999974 344578879999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+|++|||-+-...                                                                  
T Consensus       162 ~lkiAdfGwsV~~p------------------------------------------------------------------  175 (281)
T KOG0580|consen  162 ELKIADFGWSVHAP------------------------------------------------------------------  175 (281)
T ss_pred             CeeccCCCceeecC------------------------------------------------------------------
Confidence            99999999653311                                                                  


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                             ...-.+.|||.-|.+||...+..++..+|+|+||++.||+|
T Consensus       176 ---------------------------------------~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yefl  216 (281)
T KOG0580|consen  176 ---------------------------------------SNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFL  216 (281)
T ss_pred             ---------------------------------------CCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHH
Confidence                                                   00012689999999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhc-cccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDL-RDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      .+   |.+.. ....++.+ +.+...|  ...+...+++|.+||.++|.+|.+..|++.|||+..
T Consensus       217 vg~ppFes~~-~~etYkrI~k~~~~~p--~~is~~a~dlI~~ll~~~p~~r~~l~~v~~hpwI~a  278 (281)
T KOG0580|consen  217 VGLPPFESQS-HSETYKRIRKVDLKFP--STISGGAADLISRLLVKNPIERLALTEVMDHPWIVA  278 (281)
T ss_pred             hcCCchhhhh-hHHHHHHHHHccccCC--cccChhHHHHHHHHhccCccccccHHHHhhhHHHHh
Confidence            75   66655 33334433 3333334  445788999999999999999999999999999965

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.95  E-value=5.4e-28  Score=277.29  Aligned_cols=253  Identities=14%  Similarity=0.089  Sum_probs=200.7

Q ss_pred             CchhHHHhhhccccceeeeCCCCCccccccccccc-cccccccCchh--hHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          210 GFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDT-KAFVTTTMPSD--AALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       210 ~f~~~~~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      -|-.|..+-..+-+-+||||-..    +.+-++|- .++...-..+.  ..+-..++.||..++||||++.++.-+...+
T Consensus        40 Ry~k~~evLGrGafKtVYka~De----~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n  115 (632)
T KOG0584|consen   40 RYLKFDEVLGRGAFKTVYKAFDE----EEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDN  115 (632)
T ss_pred             ceeehhhhcccccceeeeecccc----ccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCC
Confidence            45567777777778899999983    33444443 33332222222  2455667788999999999998877665444


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcC--ccccCCCCCCeEEcc
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQG--VTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~g--IvHrDLKP~Nill~~  364 (1092)
                      ..              .+.+.|.+-.|+|++|+++.+ .++.+-++.+++|||.||.|||++.  |||||||.+||+|+.
T Consensus       116 ~~--------------in~iTEL~TSGtLr~Y~kk~~-~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG  180 (632)
T KOG0584|consen  116 KT--------------INFITELFTSGTLREYRKKHR-RVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNG  180 (632)
T ss_pred             ce--------------eeeeeecccCCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcC
Confidence            22              234788999999999998876 4677689999999999999999985  999999999999985


Q ss_pred             -CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCc
Q 001366          365 -SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANE  443 (1092)
Q Consensus       365 -~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1092)
                       -|.|||.|+|||.....                                                              
T Consensus       181 ~~G~VKIGDLGLAtl~r~--------------------------------------------------------------  198 (632)
T KOG0584|consen  181 NLGEVKIGDLGLATLLRK--------------------------------------------------------------  198 (632)
T ss_pred             CcCceeecchhHHHHhhc--------------------------------------------------------------
Confidence             49999999999987541                                                              


Q ss_pred             cccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHH
Q 001366          444 SDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       444 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~  523 (1092)
                                                                 ....+.+|||.|||||++. ..|+..+||||||+.+.
T Consensus       199 -------------------------------------------s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmL  234 (632)
T KOG0584|consen  199 -------------------------------------------SHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCML  234 (632)
T ss_pred             -------------------------------------------cccceeccCccccChHHHh-hhcchhhhhhhhhHHHH
Confidence                                                       0112679999999999887 68999999999999999


Q ss_pred             HHcCC---CCcHHHHHHHHHhccccCCCCCCCC-CChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          524 ELFGR---FDSERALAAAMSDLRDRILPPSFLS-ENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       524 ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ||+|+   |.--....++++.+..++.|..|.. ..|+.+.||.+||.. .+.|||+.|+|.||||...
T Consensus       235 EMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  235 EMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELLKDPFFDED  302 (632)
T ss_pred             HHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHhhChhhccc
Confidence            99985   4444567788888888888877654 458899999999999 8999999999999999875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.7e-26  Score=237.49  Aligned_cols=310  Identities=16%  Similarity=0.258  Sum_probs=258.2

Q ss_pred             CCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccccccee
Q 001366          744 PTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAV  823 (1092)
Q Consensus       744 ~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~  823 (1092)
                      +..+++.|.++++++.-.           ..|.+|.+.|..++.......+.+++.|.+.+||.+.+       ..+...
T Consensus       124 tsrivssFk~~t~~~~lv-----------re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-------g~CL~~  185 (481)
T KOG0300|consen  124 TSRIVSSFKDGTVKFRLV-----------RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-------GACLAT  185 (481)
T ss_pred             cchheeeecCCceeEeeh-----------hhhcccccceeeehhhcCCcceeecccccceeEEeecc-------ccceee
Confidence            344567787887665321           24679999999999988888999999999999999986       456667


Q ss_pred             eecCCCCeEEEEEecCCCCEEEEEECCCcEEEEE------CCC------------------------------C----ce
Q 001366          824 EMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWD------ACT------------------------------G----QT  863 (1092)
Q Consensus       824 ~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD------~~t------------------------------g----~~  863 (1092)
                      ..+|.+.|+||+|++. +.+++++|.|++..||.      +..                              +    .+
T Consensus       186 Y~GH~GSVNsikfh~s-~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP  264 (481)
T KOG0300|consen  186 YTGHTGSVNSIKFHNS-GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP  264 (481)
T ss_pred             ecccccceeeEEeccc-cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence            7899999999999997 99999999999999996      111                              0    24


Q ss_pred             EEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEE
Q 001366          864 VSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYD  942 (1092)
Q Consensus       864 i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwD  942 (1092)
                      +..|++|...|.+.+|.. .+..++++|+|.+..+||++++..+..+. |....+-++-+|.. .++++++.|.+.++||
T Consensus       265 l~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWD  342 (481)
T KOG0300|consen  265 LMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWD  342 (481)
T ss_pred             eeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEecc
Confidence            567889999999999998 88999999999999999999999999987 56778888889988 4999999999999999


Q ss_pred             cCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEE
Q 001366          943 LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIA 1022 (1092)
Q Consensus       943 lr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~la 1022 (1092)
                      +|..-..+.+++||...|+++.|..+..+++||.|.+|+|||+++.       ..++.++. -..+++.++.+..+..||
T Consensus       343 FReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNM-------RsplATIR-tdS~~NRvavs~g~~iIA  414 (481)
T KOG0300|consen  343 FREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNM-------RSPLATIR-TDSPANRVAVSKGHPIIA  414 (481)
T ss_pred             chhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccc-------cCcceeee-cCCccceeEeecCCceEE
Confidence            9976667889999999999999998889999999999999999964       33455554 356789999999888999


Q ss_pred             EEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCC--CEEEEEecCCeEEEEEcC
Q 001366         1023 CGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRS--DMVVAANSSGCIKVLQMV 1092 (1092)
Q Consensus      1023 sgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~--~~Lasgs~DG~V~vW~lv 1092 (1092)
                      .--++..|++||++... +...+         .....+|...|++++|..+-  +.|.++|.|..+.=|++.
T Consensus       415 iPhDNRqvRlfDlnG~R-laRlP---------rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  415 IPHDNRQVRLFDLNGNR-LARLP---------RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             eccCCceEEEEecCCCc-cccCC---------cccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence            99999999999987433 32221         22346888999999998653  568899999999999874

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.95  E-value=1.8e-27  Score=262.77  Aligned_cols=244  Identities=13%  Similarity=0.065  Sum_probs=173.6

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|+||+|....  ...+..++.|+..............++..++....|||++..+.....+.          .  
T Consensus         4 g~G~~g~v~~~~~~~--~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~----------~--   69 (257)
T cd05115           4 GSGNFGCVKKGVYKM--RKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEA----------L--   69 (257)
T ss_pred             CCCCcccEEEEEEec--CCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCC----------e--
Confidence            456889999986421  11123455555543333323344556667888899999998765432111          1  


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           ..+|||++|++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        70 -----~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~  144 (257)
T cd05115          70 -----MLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKA  144 (257)
T ss_pred             -----EEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCcccc
Confidence                 138999999999999976656788889999999999999999999999999999999999999999999998875


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +......                                                                         
T Consensus       145 ~~~~~~~-------------------------------------------------------------------------  151 (257)
T cd05115         145 LGADDSY-------------------------------------------------------------------------  151 (257)
T ss_pred             ccCCccc-------------------------------------------------------------------------
Confidence            4310000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~  534 (1092)
                                                 ....+...++..|+|||.+.+..++.++|||||||++|||++ +   |.....
T Consensus       152 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~  204 (257)
T cd05115         152 ---------------------------YKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKG  204 (257)
T ss_pred             ---------------------------eeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCH
Confidence                                       000001123456999999988889999999999999999985 4   322222


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      . ..+..+.....++.....++++.+++..||.++|.+||++.+|++.
T Consensus       205 ~-~~~~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~  251 (257)
T cd05115         205 P-EVMSFIEQGKRLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEER  251 (257)
T ss_pred             H-HHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            2 2233333333333344557889999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.95  E-value=9.2e-28  Score=271.14  Aligned_cols=254  Identities=14%  Similarity=0.121  Sum_probs=183.4

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.++  +.|+||++...    ..+..++.|...... .........+..+++...|||++..++....+...+  
T Consensus        20 ~y~~~~~lg~g~~g~v~~~~~~----~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~--   92 (297)
T cd06656          20 KYTRFEKIGQGASGTVYTAIDI----ATGQEVAIKQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELW--   92 (297)
T ss_pred             hceeeeeeccCCCeEEEEEEEC----CCCCEEEEEEEecCc-cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEE--
Confidence            466655554  67999999752    224555655443222 222233344556778889999998766544332222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    .+|+|++|++|.+++...  .++..+++.++.|++.+|.|||+.||+||||||+||+++.++.+++
T Consensus        93 --------------lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l  156 (297)
T cd06656          93 --------------VVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKL  156 (297)
T ss_pred             --------------EeecccCCCCHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEE
Confidence                          389999999999999654  4677789999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||++.......                                                                   
T Consensus       157 ~Dfg~~~~~~~~~-------------------------------------------------------------------  169 (297)
T cd06656         157 TDFGFCAQITPEQ-------------------------------------------------------------------  169 (297)
T ss_pred             CcCccceEccCCc-------------------------------------------------------------------
Confidence            9999876532100                                                                   


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC--
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                          .......+++.|+|||.+.+..++.++|||||||++|+|+++  
T Consensus       170 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~  213 (297)
T cd06656         170 ------------------------------------SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEP  213 (297)
T ss_pred             ------------------------------------cCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence                                                000134578889999999998899999999999999999986  


Q ss_pred             -CCcHHHHHHHHHhccccCCC-CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhccc
Q 001366          529 -FDSERALAAAMSDLRDRILP-PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                       |..................+ ......++.+.+|+.+||.++|.+||++.++++||||...+...
T Consensus       214 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~~~~  279 (297)
T cd06656         214 PYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLKLAKPLS  279 (297)
T ss_pred             CCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCchhccccccc
Confidence             43333322222222222111 12234567788999999999999999999999999998765443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.95  E-value=1.6e-27  Score=265.87  Aligned_cols=244  Identities=16%  Similarity=0.138  Sum_probs=175.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|+||+|....    .+..++.|+...............+..++....|||++...+....+...+           
T Consensus        14 ~g~~~~vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   78 (277)
T cd06642          14 KGSFGEVYKGIDNR----TKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLW-----------   78 (277)
T ss_pred             CCCCeeEEEEEEcC----CCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceE-----------
Confidence            35679999997532    234455555432222222233445666778889999998666544322222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           ++|||+.|++|.+++...  .++...++.++.||++||.|||++||+|+||||+||+++.++.++++|||+++.+
T Consensus        79 -----lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~  151 (277)
T cd06642          79 -----IIMEYLGGGSALDLLKPG--PLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQL  151 (277)
T ss_pred             -----EEEEccCCCcHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccc
Confidence                 489999999999998653  5677789999999999999999999999999999999999999999999987654


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       152 ~~~~----------------------------------------------------------------------------  155 (277)
T cd06642         152 TDTQ----------------------------------------------------------------------------  155 (277)
T ss_pred             cCcc----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHHHH--HH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERAL--AA  537 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~~~--~~  537 (1092)
                                                 .......|+..|+|||.+.+..++.++|+|||||++|||+++..+....  ..
T Consensus       156 ---------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~  208 (277)
T cd06642         156 ---------------------------IKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR  208 (277)
T ss_pred             ---------------------------hhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh
Confidence                                       0000235778899999999988999999999999999999974332111  11


Q ss_pred             HHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          538 AMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       538 ~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ....+.....+......+..+.+|+.+||+.+|.+||++.++++||||...
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  259 (277)
T cd06642         209 VLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLKHKFITRY  259 (277)
T ss_pred             HHhhhhcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHhHHHHHH
Confidence            111111111222222346778899999999999999999999999999664

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.9e-26  Score=240.97  Aligned_cols=292  Identities=15%  Similarity=0.235  Sum_probs=235.5

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC---------CCCcccccce--eeecCCCCeEEEEEecCCCC
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALF---------NDSVDVYYPA--VEMSNRSKLSCVCWNNYIKN  842 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~---------~~~~~~~~~~--~~~~h~~~V~~v~~sp~~~~  842 (1092)
                      -+..|..++.+.+|+|||.++||||.|..|+|+|+....         .+..+...|+  ....|...|+++.|+|. ..
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e~  185 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-ET  185 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-hh
Confidence            456899999999999999999999999999999987311         1122233333  35679999999999998 89


Q ss_pred             EEEEEECCCcEEEEECCCCce---EEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe----cCCc
Q 001366          843 YLASADYDGVVKLWDACTGQT---VSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK----NIAN  915 (1092)
Q Consensus       843 ~LaSgs~DgtV~IWD~~tg~~---i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~----~~~~  915 (1092)
                      +|++|+.|++|++||..+...   .+.|. ...+|.++.|+| .|.+|+.|.+..++++||+++-+|...-.    |.+.
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence            999999999999999876432   23332 457899999999 89999999999999999999988765543    6678


Q ss_pred             eEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCC-CCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCC
Q 001366          916 VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHE-KAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGP  993 (1092)
Q Consensus       916 V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~-~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~  993 (1092)
                      |++|.+++.++ +.++|+.||.|++||--+.+.....-.+|. ..|++..|. +++++++.+.|..+++|.+.       
T Consensus       264 i~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~-------  335 (430)
T KOG0640|consen  264 ITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS-------  335 (430)
T ss_pred             eeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec-------
Confidence            99999999995 999999999999999887765434445675 478999998 88999999999999999998       


Q ss_pred             CCCceeEEEcCC--CCC---eEEEEEecCCCEEEEEec-CCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEE
Q 001366          994 STNACSLTFSGH--TNE---KNFVGLSTADGYIACGSE-SNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSS 1067 (1092)
Q Consensus       994 ~~~~~~~~l~~h--~~~---V~~v~~spdg~~lasgs~-Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~s 1067 (1092)
                       ++.++.++.|-  ++.   -+...|+....|++.-.+ .+.+.-||..++..+....             -+|++.|..
T Consensus       336 -t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-------------lgHn~a~R~  401 (430)
T KOG0640|consen  336 -TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-------------LGHNGAVRW  401 (430)
T ss_pred             -CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-------------cCCCCCceE
Confidence             45667777653  111   123457777778776654 5789999988776655443             578999999


Q ss_pred             EEEeCCCCEEEEEecCCeEEEEE
Q 001366         1068 VCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1068 va~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      +.-+|.+.-+.||+.|-.+++|-
T Consensus       402 i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  402 IVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             EEeCCCCCceeeecccceeeeee
Confidence            99999999999999999999995

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=2.4e-27  Score=262.54  Aligned_cols=247  Identities=17%  Similarity=0.166  Sum_probs=175.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchh--------hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD--------AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      .++.|.||+|...+    .+..++.|.+........        .....++..++....|||++.+......+...+   
T Consensus        10 ~g~~~~v~~a~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~---   82 (267)
T cd06628          10 SGSFGSVYLGMNAS----SGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLN---   82 (267)
T ss_pred             cCCCeEEEEEEecC----CCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccE---
Confidence            35789999997532    134444443322111111        122334556677889999998766544332222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+|||+.|++|.++++..+ .++...+..++.||+.||+|||++||+||||||+||++++++.+|++
T Consensus        83 -------------lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~  148 (267)
T cd06628          83 -------------IFLEYVPGGSVAALLNNYG-AFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKIS  148 (267)
T ss_pred             -------------EEEEecCCCCHHHHHHhcc-CccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEec
Confidence                         3799999999999997764 46677899999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.+.......                                                                 
T Consensus       149 dfg~~~~~~~~~~~~-----------------------------------------------------------------  163 (267)
T cd06628         149 DFGISKKLEANSLST-----------------------------------------------------------------  163 (267)
T ss_pred             ccCCCcccccccccC-----------------------------------------------------------------
Confidence            999887654100000                                                                 


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                      ..........|+..|+|||.+.+..++.++|+|||||++|+|+++   
T Consensus       164 --------------------------------~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p  211 (267)
T cd06628         164 --------------------------------KTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHP  211 (267)
T ss_pred             --------------------------------CccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCC
Confidence                                            000001134578889999999988899999999999999999986   


Q ss_pred             CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          529 FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      |.......... .+.....+......+..+.+|+.+||+++|.+||++.+|++||||
T Consensus       212 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  267 (267)
T cd06628         212 FPDCTQLQAIF-KIGENASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLKHPFL  267 (267)
T ss_pred             CCCccHHHHHH-HHhccCCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhhCCCC
Confidence            43333322222 222222333334457888999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.95  E-value=1.4e-27  Score=264.50  Aligned_cols=250  Identities=16%  Similarity=0.183  Sum_probs=176.3

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      +...|.+.+.++  +.|.||+|....    .+..++.|+....... ......++...+...+|||++.+......+...
T Consensus         7 ~~~~y~~~~~lg~g~~g~vy~~~~~~----~~~~~aik~~~~~~~~-~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~   81 (267)
T cd06646           7 PQHDYELIQRVGSGTYGDVYKARNLH----TGELAAVKIIKLEPGD-DFSLIQQEIFMVKECKHCNIVAYFGSYLSREKL   81 (267)
T ss_pred             chhhcchhheeecCCCeEEEEEEECC----CCeEEEEEEEecCccc-hHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEE
Confidence            344566666664  679999998622    2344555554322111 122233455677888999999876554433222


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      +                .+|||++|++|.+++...+ .++..++..++.|++.||+|||++||+||||||+||+++.++.
T Consensus        82 ~----------------iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~  144 (267)
T cd06646          82 W----------------ICMEYCGGGSLQDIYHVTG-PLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGD  144 (267)
T ss_pred             E----------------EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCC
Confidence            2                3799999999999997654 5677799999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +|++|||+++......                                                                
T Consensus       145 ~~l~dfg~~~~~~~~~----------------------------------------------------------------  160 (267)
T cd06646         145 VKLADFGVAAKITATI----------------------------------------------------------------  160 (267)
T ss_pred             EEECcCccceeecccc----------------------------------------------------------------
Confidence            9999999887643100                                                                


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc---CCCCCccccchhhhHHHHH
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS---GGVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~---~~~~t~~sDIwSLGvll~e  524 (1092)
                                                             .......|+..|+|||.+.   ...++.++|+|||||++||
T Consensus       161 ---------------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~e  201 (267)
T cd06646         161 ---------------------------------------AKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIE  201 (267)
T ss_pred             ---------------------------------------cccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHH
Confidence                                                   0001345778899999985   3457889999999999999


Q ss_pred             HcCCCCcH---HHHHHHHHhccccCCCCCC---CCCChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          525 LFGRFDSE---RALAAAMSDLRDRILPPSF---LSENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       525 ll~~f~~~---~~~~~~~~~~~~~~~p~~~---~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      |+++..+.   ...............++.+   ...++.+.+|+.+||..+|++||++++||+|+|
T Consensus       202 l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l~  267 (267)
T cd06646         202 LAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHLF  267 (267)
T ss_pred             HHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHHHHhcCCC
Confidence            99863322   1111111111111122222   234678899999999999999999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.95  E-value=1.6e-27  Score=266.57  Aligned_cols=248  Identities=16%  Similarity=0.105  Sum_probs=167.8

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|.|.||+|....    .+..++.|+.....  ........+...+... .|||++.............   ....  
T Consensus        25 g~g~~~~v~~~~~~~----~~~~~a~K~~~~~~--~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~---~~~~--   93 (282)
T cd06636          25 GNGTYGQVYKGRHVK----TGQLAAIKVMDVTE--DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPG---HDDQ--   93 (282)
T ss_pred             ccCCCeEEEEEEEcC----CCcEEEEEEEecCh--HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccC---CCCE--
Confidence            335789999988632    24445555542221  1112222223333333 6999887655433211110   0011  


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                           ..++|||+.+++|.+++... +..+++..++.++.||+.||+|||++||+||||||+||+++.++.++++|||++
T Consensus        94 -----~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~  168 (282)
T cd06636          94 -----LWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVS  168 (282)
T ss_pred             -----EEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcch
Confidence                 12489999999999999653 345777788999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      .......                                                                         
T Consensus       169 ~~~~~~~-------------------------------------------------------------------------  175 (282)
T cd06636         169 AQLDRTV-------------------------------------------------------------------------  175 (282)
T ss_pred             hhhhccc-------------------------------------------------------------------------
Confidence            6533100                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-----CCCCCccccchhhhHHHHHHcCCCCc
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-----GGVCTTSSNIYSLGVLFFELFGRFDS  531 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-----~~~~t~~sDIwSLGvll~ell~~f~~  531 (1092)
                                                    .......|+..|+|||.+.     +..++.++|||||||++|||+++..+
T Consensus       176 ------------------------------~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p  225 (282)
T cd06636         176 ------------------------------GRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPP  225 (282)
T ss_pred             ------------------------------cCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCC
Confidence                                          0001346788999999986     35688999999999999999987333


Q ss_pred             H---HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          532 E---RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       532 ~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .   ..........+...........++.+.+|+.+||..+|.+||++.|||+||||
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~~~~  282 (282)
T cd06636         226 LCDMHPMRALFLIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKHPFI  282 (282)
T ss_pred             ccccCHHhhhhhHhhCCCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHHhcCCCC
Confidence            2   22222211111111111222356788999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.95  E-value=8.4e-28  Score=277.03  Aligned_cols=242  Identities=17%  Similarity=0.096  Sum_probs=171.3

Q ss_pred             CCchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          209 SGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       209 ~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      +-+.+|.++..++  ..++|-+.....    ....-++|+......+.+    -.+..++.-..|||++++.+....+..
T Consensus       319 ~~~~~y~~~~~~~~gs~s~~~~~~~~~----t~~~~~vkii~~~~~~~~----~e~~~~~~~~~h~niv~~~~v~~~~~~  390 (612)
T KOG0603|consen  319 PFTESYEFREELGEGSFSAVKYCESSP----TDQEPAVKIISKRADDNQ----DEIPISLLVRDHPNIVKSHDVYEDGKE  390 (612)
T ss_pred             CcchhhccccccCCCCccceeeeeccc----cccchhheeccccccccc----cccchhhhhcCCCcceeecceecCCce
Confidence            3344666666632  234554444422    233444445433211111    112234556689999976665443333


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE-ccC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL-LQS  365 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill-~~~  365 (1092)
                      .+                .+||++.|+-|.+.+.......  .++..|++||+.||+|||++|||||||||+|||+ ...
T Consensus       391 ~~----------------~v~e~l~g~ell~ri~~~~~~~--~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~  452 (612)
T KOG0603|consen  391 IY----------------LVMELLDGGELLRRIRSKPEFC--SEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSA  452 (612)
T ss_pred             ee----------------eeehhccccHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCC
Confidence            33                3899999999999986654322  5788999999999999999999999999999999 588


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      ++++|+|||.++.....                                                               
T Consensus       453 g~lrltyFG~a~~~~~~---------------------------------------------------------------  469 (612)
T KOG0603|consen  453 GHLRLTYFGFWSELERS---------------------------------------------------------------  469 (612)
T ss_pred             CcEEEEEechhhhCchh---------------------------------------------------------------
Confidence            99999999988775411                                                               


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                                                                 +.+.+-|..|.|||++....||.+|||||||++||+|
T Consensus       470 -------------------------------------------~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~M  506 (612)
T KOG0603|consen  470 -------------------------------------------CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEM  506 (612)
T ss_pred             -------------------------------------------hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHH
Confidence                                                       1123456779999999999999999999999999999


Q ss_pred             cCCCC---cHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          526 FGRFD---SERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       526 l~~f~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      |+|..   ....-.+++..+..   |+.-...+...++|+.+||+.||.+||++.+++.||||
T Consensus       507 L~G~tp~~~~P~~~ei~~~i~~---~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~  566 (612)
T KOG0603|consen  507 LTGRTLFAAHPAGIEIHTRIQM---PKFSECVSDEAKDLLQQLLQVDPALRLGADEIGAHPWF  566 (612)
T ss_pred             HhCCCccccCCchHHHHHhhcC---CccccccCHHHHHHHHHhccCChhhCcChhhhccCcch
Confidence            99732   22222333333332   22225668889999999999999999999999999999

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.95  E-value=1.5e-27  Score=270.72  Aligned_cols=259  Identities=18%  Similarity=0.183  Sum_probs=179.8

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchh-hHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.+  ++.|+||+|...    ..++.++.|++........ .....++..++...+|+|++.+..........  
T Consensus         8 ~y~~~~~ig~g~~~~v~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~--   81 (309)
T cd07845           8 EFEKLNRIGEGTYGIVYRARDT----TSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLD--   81 (309)
T ss_pred             ceeEeeeeeecCCEEEEEEEEC----CCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCC--
Confidence            34444433  467999999863    2345566655432222111 12233566778888999999866553321100  


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                           .       ...+|||+++ +|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+|
T Consensus        82 -----~-------~~lv~e~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~k  148 (309)
T cd07845          82 -----S-------IFLVMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLK  148 (309)
T ss_pred             -----e-------EEEEEecCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEE
Confidence                 0       1137899875 89999977656788889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++......                                                                  
T Consensus       149 L~dfg~~~~~~~~~------------------------------------------------------------------  162 (309)
T cd07845         149 IADFGLARTYGLPA------------------------------------------------------------------  162 (309)
T ss_pred             ECccceeeecCCcc------------------------------------------------------------------
Confidence            99999887643100                                                                  


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                           ...+...++.+|+|||.+.+ ..++.++|||||||++|||+++
T Consensus       163 -------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g  205 (309)
T cd07845         163 -------------------------------------KPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAH  205 (309)
T ss_pred             -------------------------------------CCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhC
Confidence                                                 00012345788999999876 5579999999999999999986


Q ss_pred             ---CCcHHHHHHHHHhcc--cc------------------CCCC--------CCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          529 ---FDSERALAAAMSDLR--DR------------------ILPP--------SFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~--~~------------------~~p~--------~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                         |..............  ..                  .++.        .+...++.+.+|+.+||++||++|||+.
T Consensus       206 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~  285 (309)
T cd07845         206 KPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAE  285 (309)
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHH
Confidence               433322222211111  00                  0010        0122467788999999999999999999


Q ss_pred             HHhhhhhhhhhhccch
Q 001366          578 EILQSEVTNEFQEVCA  593 (1092)
Q Consensus       578 eiL~~~~~~~~~~~~~  593 (1092)
                      ++|+||||.+.+.+..
T Consensus       286 ~il~h~~f~~~~~~~~  301 (309)
T cd07845         286 EALESSYFKEKPLPCE  301 (309)
T ss_pred             HHhcChhhccCCCCCC
Confidence            9999999988766544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.95  E-value=1.9e-27  Score=265.44  Aligned_cols=249  Identities=15%  Similarity=0.130  Sum_probs=180.7

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ++.|.||+|....    .+..++.|+............-..+..++....||+++.+......+...+   
T Consensus         6 y~~~~~lg~g~~~~vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~---   78 (277)
T cd06640           6 FTKLERIGKGSFGEVFKGIDNR----TQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLW---   78 (277)
T ss_pred             hhhhhhcccCCCeEEEEEEEcc----CCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEE---
Confidence            4444443  4679999997632    244555555432222222333444566777889999998877765444333   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   ++|||+.|++|.+++...  .++..++..++.|++.||+|+|++|++|+||+|+||+++.++.++++
T Consensus        79 -------------lv~e~~~~~~L~~~i~~~--~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~  143 (277)
T cd06640          79 -------------IIMEYLGGGSALDLLRAG--PFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLA  143 (277)
T ss_pred             -------------EEEecCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEc
Confidence                         389999999999999754  46777899999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||++.......                                                                    
T Consensus       144 dfg~~~~~~~~~--------------------------------------------------------------------  155 (277)
T cd06640         144 DFGVAGQLTDTQ--------------------------------------------------------------------  155 (277)
T ss_pred             ccccceeccCCc--------------------------------------------------------------------
Confidence            999886543100                                                                    


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCc
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDS  531 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~  531 (1092)
                                                         .......++.+|+|||.+.+..++.++|+|||||++|||+++..+
T Consensus       156 -----------------------------------~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p  200 (277)
T cd06640         156 -----------------------------------IKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPP  200 (277)
T ss_pred             -----------------------------------cccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCC
Confidence                                               000123577889999999988899999999999999999997322


Q ss_pred             ---HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          532 ---ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       532 ---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                         ........ .+.....|......++.+.+|+.+||+.+|.+||++.++++|+||...
T Consensus       201 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  259 (277)
T cd06640         201 NSDMHPMRVLF-LIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKHKFIVKN  259 (277)
T ss_pred             CCCcChHhHhh-hhhcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhChHhhhc
Confidence               22221111 111112222233446778899999999999999999999999999664

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.95  E-value=4.5e-27  Score=260.55  Aligned_cols=244  Identities=14%  Similarity=0.113  Sum_probs=173.0

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|+||+|.....-.. ...++.|+............-.++..++...+|||++.+......+...+           
T Consensus        14 ~g~~g~vy~~~~~~~~~~-~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   81 (266)
T cd05033          14 GGEFGEVCRGRLKLPGKK-EIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVM-----------   81 (266)
T ss_pred             CCccceEEEEEEccCCCC-cceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceE-----------
Confidence            367899999976431111 23444444432222222223344666788889999998665543222222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|||+.|++|.+++......++..+++.++.|++.||.|||++||+||||||+||+++.++.+|++|||+++..
T Consensus        82 -----iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~  156 (266)
T cd05033          82 -----IITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRL  156 (266)
T ss_pred             -----EEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhcc
Confidence                 379999999999999776557888899999999999999999999999999999999999999999999998764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ......                                                                          
T Consensus       157 ~~~~~~--------------------------------------------------------------------------  162 (266)
T cd05033         157 EDSEAT--------------------------------------------------------------------------  162 (266)
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            310000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                .. .....++..|+|||.+.+..++.++|||||||++|||++ +   |..... 
T Consensus       163 --------------------------~~-~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~-  214 (266)
T cd05033         163 --------------------------YT-TKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSN-  214 (266)
T ss_pred             --------------------------ee-ccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCH-
Confidence                                      00 001123567999999998889999999999999999986 4   322221 


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ......+.....++.....++.+.+|+.+||..+|.+||++.+|+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~  261 (266)
T cd05033         215 QDVIKAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVST  261 (266)
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            22222222222223334567889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.95  E-value=2.5e-27  Score=261.56  Aligned_cols=237  Identities=15%  Similarity=0.089  Sum_probs=164.7

Q ss_pred             hccccceeeeCCCCCcc---ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          219 TLKGKGIVCRGPPLNAF---KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ..+|.|.||+|...+.-   ......++.|+.... ..........+..++....|||++.+......+...+       
T Consensus         4 g~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~-------   75 (258)
T cd05078           4 GQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKS-HRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESI-------   75 (258)
T ss_pred             CcccchhheeeeecccccccccccchhhHHhhcch-hHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcE-------
Confidence            35688999999863210   001122333333211 1122233345566777889999998766655332222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc--------
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ--------  367 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~--------  367 (1092)
                               .+|||+.|++|.++|...+..++...++.++.||+.||+|||++||+||||||+||+++.++.        
T Consensus        76 ---------lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~  146 (258)
T cd05078          76 ---------MVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPF  146 (258)
T ss_pred             ---------EEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCce
Confidence                     379999999999999877767888899999999999999999999999999999999988776        


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      ++++|||++.....                                                                  
T Consensus       147 ~~l~d~g~~~~~~~------------------------------------------------------------------  160 (258)
T cd05078         147 IKLSDPGISITVLP------------------------------------------------------------------  160 (258)
T ss_pred             EEecccccccccCC------------------------------------------------------------------
Confidence            46777765533210                                                                  


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHc
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell  526 (1092)
                                                               .....++..|+|||.+.+ ..++.++|||||||++|||+
T Consensus       161 -----------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~  199 (258)
T cd05078         161 -----------------------------------------KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIF  199 (258)
T ss_pred             -----------------------------------------chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHH
Confidence                                                     002346777999999987 45799999999999999999


Q ss_pred             CC-CCcHHH--HHHHHHhcc-ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          527 GR-FDSERA--LAAAMSDLR-DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       527 ~~-f~~~~~--~~~~~~~~~-~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ++ ..+...  ......... ...+|+   ..++++.+|+.+||+++|++|||+++|++.
T Consensus       200 ~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~~il~~  256 (258)
T cd05078         200 SGGDKPLSALDSQKKLQFYEDRHQLPA---PKWTELANLINQCMDYEPDFRPSFRAIIRD  256 (258)
T ss_pred             cCCCCChhhccHHHHHHHHHccccCCC---CCcHHHHHHHHHHhccChhhCCCHHHHHHh
Confidence            86 222111  111111111 112222   345789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=9.6e-27  Score=237.12  Aligned_cols=281  Identities=17%  Similarity=0.259  Sum_probs=236.1

Q ss_pred             cCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          776 NNSANVICSISFDR---DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       776 ~~h~~~V~sl~fsp---dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      .+|+.+|-.++|+|   +|-+|++++.|+.=.+-+-++       ........+|++.|...+.+.+ ....|+++.|=+
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t-------gdwigtfeghkgavw~~~l~~n-a~~aasaaadft   82 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT-------GDWIGTFEGHKGAVWSATLNKN-ATRAASAAADFT   82 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC-------CCcEEeeeccCcceeeeecCch-hhhhhhhcccch
Confidence            38999999999985   899999999998876654332       2334566789999999999886 778899999999


Q ss_pred             EEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc-eeeeEe-cCCceEEEEEccCCCeEEE
Q 001366          853 VKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN-SLATIK-NIANVCCVQFSAHSSHLLA  930 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~-~l~~l~-~~~~V~sl~fsp~~~~~la  930 (1092)
                      .+|||.-+|..+.+|. |..-|.+++|+. +.+.|++|+.+..++|||++..+ +...+. |.+.|..+-|.-... .++
T Consensus        83 akvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~-~iL  159 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK-CIL  159 (334)
T ss_pred             hhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc-eEE
Confidence            9999999999999986 999999999999 88999999999999999998764 334444 678899999987764 666


Q ss_pred             EEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeE
Q 001366          931 FGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN 1010 (1092)
Q Consensus       931 tgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~ 1010 (1092)
                      +++.|++|++||.|++... .++. -..+|+++..+.++.+++....+.|++||...        ...++.+.. ...|.
T Consensus       160 SSadd~tVRLWD~rTgt~v-~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks--------f~~lKs~k~-P~nV~  228 (334)
T KOG0278|consen  160 SSADDKTVRLWDHRTGTEV-QSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS--------FGLLKSYKM-PCNVE  228 (334)
T ss_pred             eeccCCceEEEEeccCcEE-EEEe-cCCCCcceeeccCCCEEEEecCceeEEecccc--------ccceeeccC-ccccc
Confidence            7799999999999998753 4433 35679999999777888888889999999983        344555553 34588


Q ss_pred             EEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1011 FVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1011 ~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      +.+++|+...++||++|..++.||..++..+..+.             .+|-++|.+|.|+|+|...|+|+.||+|++|+
T Consensus       229 SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-------------kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  229 SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-------------KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             cccccCCCceEEecCcceEEEEEeccCCceeeecc-------------cCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            89999999999999999999999999998776542             57889999999999999999999999999998


Q ss_pred             c
Q 001366         1091 M 1091 (1092)
Q Consensus      1091 l 1091 (1092)
                      +
T Consensus       296 t  296 (334)
T KOG0278|consen  296 T  296 (334)
T ss_pred             e
Confidence            6

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=3.2e-27  Score=261.66  Aligned_cols=236  Identities=12%  Similarity=0.056  Sum_probs=162.2

Q ss_pred             ccccceeeeCCCCCcccc--------ccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKE--------RRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      .++.|.||+|...+....        ....++.|+.... .......-..+..++...+|||++.++.....+...+   
T Consensus         5 ~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~-~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~---   80 (262)
T cd05077           5 RGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPS-HRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI---   80 (262)
T ss_pred             cCCcceEeeeecccCCCccccccchhhceeEEEeecChh-hhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE---
Confidence            467899999986432211        0112233332111 1111222334456777889999998776544322222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc----
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ----  367 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~----  367 (1092)
                                   .+|||+++++|..++......++...++.++.||+.||+|||++||+||||||+|||++.++.    
T Consensus        81 -------------lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~  147 (262)
T cd05077          81 -------------MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGEC  147 (262)
T ss_pred             -------------EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCC
Confidence                         389999999999999776667888899999999999999999999999999999999987664    


Q ss_pred             ---EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          368 ---VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       368 ---vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                         +|++|||++.....                                                               
T Consensus       148 ~~~~~l~d~g~~~~~~~---------------------------------------------------------------  164 (262)
T cd05077         148 GPFIKLSDPGIPITVLS---------------------------------------------------------------  164 (262)
T ss_pred             CceeEeCCCCCCccccC---------------------------------------------------------------
Confidence               88999987654220                                                               


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-CCCCCccccchhhhHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-GGVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-~~~~t~~sDIwSLGvll~  523 (1092)
                                                                  .....++..|+|||.+. +..++.++|||||||+||
T Consensus       165 --------------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~  200 (262)
T cd05077         165 --------------------------------------------RQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLW  200 (262)
T ss_pred             --------------------------------------------cccccccccccChhhhcCCCCCCchhHHHHHHHHHH
Confidence                                                        00234667799999987 467899999999999999


Q ss_pred             HHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          524 ELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       524 ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||++ +   |..... ... ........ +......+.+.+|+.+||+.||.+||++.+|+++
T Consensus       201 el~~~~~~p~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~  260 (262)
T cd05077         201 EICYNGEIPLKDKTL-AEK-ERFYEGQC-MLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRD  260 (262)
T ss_pred             HHHhCCCCCCCCcch-hHH-HHHHhcCc-cCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHh
Confidence            9974 3   222111 111 11111111 1112235678899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.95  E-value=1.7e-27  Score=253.03  Aligned_cols=243  Identities=15%  Similarity=0.138  Sum_probs=179.9

Q ss_pred             ccceeeeCCCCCccccccccccc-cccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDT-KAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      |..+|+-+..    .+.++.++. |+........-..++-++.+++-..+|+|+++.+...........          |
T Consensus        28 g~~~v~~a~D----~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~----------~   93 (369)
T KOG0665|consen   28 GAQIVVAAFD----QVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEE----------F   93 (369)
T ss_pred             CCceEEecch----hhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHH----------H
Confidence            6666666665    333444444 333333334456778888999999999999987665443333221          1


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                      .....+||++. .+|.+.+..   .++...+..|+.|++.|+.|+|+.||+||||||+||++..++.+|+.|||+|+.-.
T Consensus        94 ~e~y~v~e~m~-~nl~~vi~~---elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~  169 (369)
T KOG0665|consen   94 QEVYLVMELMD-ANLCQVILM---ELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTED  169 (369)
T ss_pred             HhHHHHHHhhh-hHHHHHHHH---hcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcccC
Confidence            11223676665 588888763   46777899999999999999999999999999999999999999999999987622


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (369)
T KOG0665|consen  170 --------------------------------------------------------------------------------  169 (369)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAA  537 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~  537 (1092)
                                              +...++..++|+.|+|||++.+..|...+||||+||++.||+++   |++.....+
T Consensus       170 ------------------------~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ  225 (369)
T KOG0665|consen  170 ------------------------TDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQ  225 (369)
T ss_pred             ------------------------cccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHH
Confidence                                    12335578999999999999998899999999999999999987   777766666


Q ss_pred             HHHhcccc--------------------------------CCCCC-CC-------CCChhHHHHHHhccccCCCCCCCHH
Q 001366          538 AMSDLRDR--------------------------------ILPPS-FL-------SENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       538 ~~~~~~~~--------------------------------~~p~~-~~-------~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                      +.+.....                                .+|.. |+       ......++++.+||..+|++|.+++
T Consensus       226 ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~  305 (369)
T KOG0665|consen  226 WNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVD  305 (369)
T ss_pred             HHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHH
Confidence            54333221                                11211 11       1223467999999999999999999


Q ss_pred             HHhhhhhhh
Q 001366          578 EILQSEVTN  586 (1092)
Q Consensus       578 eiL~~~~~~  586 (1092)
                      ++|.||||+
T Consensus       306 daL~HPY~~  314 (369)
T KOG0665|consen  306 DALRHPYIK  314 (369)
T ss_pred             HHhcCCeee
Confidence            999999997

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.95  E-value=2.7e-27  Score=260.05  Aligned_cols=240  Identities=14%  Similarity=0.102  Sum_probs=174.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|.||++...+    .+..++.|.+.....   .....++...+...+|||++.+......+...+           
T Consensus        13 ~g~~~~v~~~~~~~----~~~~~~~k~~~~~~~---~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~-----------   74 (256)
T cd06612          13 EGSYGSVYKAIHKE----TGQVVAIKVVPVEED---LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLW-----------   74 (256)
T ss_pred             CCCCeEEEEEEEcC----CCcEEEEEEeecHHH---HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEE-----------
Confidence            34679999998743    133444444422211   233444555677779999998666544332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           ++++|+.|++|.+++...+..++...++.++.||+.||.|||++||+|+||+|+||+++.++.+|++|||++...
T Consensus        75 -----l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~  149 (256)
T cd06612          75 -----IVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQL  149 (256)
T ss_pred             -----EEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhc
Confidence                 389999999999999877778888899999999999999999999999999999999999999999999988764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      .....                                                                           
T Consensus       150 ~~~~~---------------------------------------------------------------------------  154 (256)
T cd06612         150 TDTMA---------------------------------------------------------------------------  154 (256)
T ss_pred             ccCcc---------------------------------------------------------------------------
Confidence            31000                                                                           


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALA  536 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~  536 (1092)
                                                  ......|+..|+|||.+.+..++.++|||||||++|+|+++   |.......
T Consensus       155 ----------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~  206 (256)
T cd06612         155 ----------------------------KRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMR  206 (256)
T ss_pred             ----------------------------ccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhh
Confidence                                        00123467789999999998899999999999999999986   33222222


Q ss_pred             HHHHhccccC-CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          537 AAMSDLRDRI-LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       537 ~~~~~~~~~~-~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .......... ........+..+.+|+.+||..+|.+|||+.++|+||||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~~~~~  256 (256)
T cd06612         207 AIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQHPFI  256 (256)
T ss_pred             hhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhcCCCC
Confidence            2211111111 001112345678999999999999999999999999997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.95  E-value=3.3e-27  Score=263.36  Aligned_cols=245  Identities=16%  Similarity=0.105  Sum_probs=168.5

Q ss_pred             ccccceeeeCCCCCccc-cccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFK-ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|+||+|....... ..+..++.|+...............+..++....|||++.+......+...+          
T Consensus        16 ~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~----------   85 (277)
T cd05062          16 QGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTL----------   85 (277)
T ss_pred             cccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCeE----------
Confidence            35789999886522111 1133445544322211112222345566778889999998765543222222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCC---------CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGH---------KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~---------~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                            .+|||+.|++|.+++.....         .++...++.++.|++.||+|||++||+||||||+||+++.++.+|
T Consensus        86 ------lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~  159 (277)
T cd05062          86 ------VIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVK  159 (277)
T ss_pred             ------EEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEE
Confidence                  37999999999999965322         245567889999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++........                                                                
T Consensus       160 l~dfg~~~~~~~~~~~----------------------------------------------------------------  175 (277)
T cd05062         160 IGDFGMTRDIYETDYY----------------------------------------------------------------  175 (277)
T ss_pred             ECCCCCccccCCccee----------------------------------------------------------------
Confidence            9999988754310000                                                                


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~  528 (1092)
                                                           .......++..|+|||.+.+..++.++|||||||++|||++ +
T Consensus       176 -------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~  218 (277)
T cd05062         176 -------------------------------------RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLA  218 (277)
T ss_pred             -------------------------------------ecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCC
Confidence                                                 00002245677999999999889999999999999999997 3


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                         |..... ............++.....++.+.+|+.+||+.+|++|||+.|+++.
T Consensus       219 ~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  274 (277)
T cd05062         219 EQPYQGMSN-EQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  274 (277)
T ss_pred             CCCCCCCCH-HHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence               333222 22222222222333333456778999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.94  E-value=4.2e-27  Score=263.61  Aligned_cols=250  Identities=16%  Similarity=0.046  Sum_probs=173.5

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|+||++.........+..++.|...............++...+....|||++.+.........       ..   
T Consensus        13 g~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~-------~~---   82 (284)
T cd05079          13 GEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGG-------NG---   82 (284)
T ss_pred             CCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCC-------Cc---
Confidence            34578999987642211223455555554333222223344556667888899999875544322110       00   


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                          ...+|||++|++|.+++......++..+++.++.||+.||+|+|++||+||||||+||+++.++.+|++|||+++.
T Consensus        83 ----~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~  158 (284)
T cd05079          83 ----IKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKA  158 (284)
T ss_pred             ----eEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccc
Confidence                1248999999999999977655678889999999999999999999999999999999999999999999998876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +......                                                                         
T Consensus       159 ~~~~~~~-------------------------------------------------------------------------  165 (284)
T cd05079         159 IETDKEY-------------------------------------------------------------------------  165 (284)
T ss_pred             cccCccc-------------------------------------------------------------------------
Confidence            4310000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcH------
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSE------  532 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~------  532 (1092)
                                                 ........++..|+|||.+.+..++.++|||||||++|||+++..+.      
T Consensus       166 ---------------------------~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~  218 (284)
T cd05079         166 ---------------------------YTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTL  218 (284)
T ss_pred             ---------------------------eeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccch
Confidence                                       00000234566799999999888999999999999999999742110      


Q ss_pred             -----------HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          533 -----------RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       533 -----------~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                                 .........+......+.....++.+.+|+.+||+++|.+||++.++++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  279 (284)
T cd05079         219 FLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEG  279 (284)
T ss_pred             hhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence                       01111111122222233344567889999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.94  E-value=5.1e-27  Score=258.00  Aligned_cols=244  Identities=16%  Similarity=0.146  Sum_probs=177.0

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|+||++...+.. ..+..++.|+..............++...+....|++++.++.....+...+           
T Consensus         5 ~g~~g~v~~~~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~-----------   72 (262)
T cd00192           5 EGAFGEVYKGKLKGKD-GKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLY-----------   72 (262)
T ss_pred             cCCceEEEEEEEecCC-CCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceE-----------
Confidence            4678999999885421 1134445555433333223344455566777778999998665544322222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc--------CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR--------GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~--------~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                           .+|+|+.|++|.+++...        ...++..++..++.||+.||+|||++||+||||||+||+++.++.+|++
T Consensus        73 -----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~  147 (262)
T cd00192          73 -----LVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKIS  147 (262)
T ss_pred             -----EEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEc
Confidence                 389999999999999876        4668888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||.++.......                                                                   
T Consensus       148 dfg~~~~~~~~~~-------------------------------------------------------------------  160 (262)
T cd00192         148 DFGLSRDVYDDDY-------------------------------------------------------------------  160 (262)
T ss_pred             ccccccccccccc-------------------------------------------------------------------
Confidence            9998876541100                                                                   


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                        ........++..|+|||.+.+..++.++|||||||++|||+++   
T Consensus       161 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~  206 (262)
T cd00192         161 ----------------------------------YRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGAT  206 (262)
T ss_pred             ----------------------------------cccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCC
Confidence                                              0000133457779999999988899999999999999999973   


Q ss_pred             -CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 -FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       |..... ......+.....++.....++.+.+++.+||..+|++||++.+++++
T Consensus       207 p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  260 (262)
T cd00192         207 PYPGLSN-EEVLEYLRKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVER  260 (262)
T ss_pred             CCCCCCH-HHHHHHHHcCCCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHh
Confidence             333322 22222222233333344557889999999999999999999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.94  E-value=3.2e-27  Score=261.92  Aligned_cols=246  Identities=16%  Similarity=0.140  Sum_probs=170.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC---ch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM---PS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      .++.|+||++...+    .+..++.|+......   .. ......++..++...+|||++...........       ..
T Consensus        12 ~g~~g~vy~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~-------~~   80 (266)
T cd06651          12 QGAFGRVYLCYDVD----TGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAE-------KT   80 (266)
T ss_pred             CCCCEEEEEEEEcC----CCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCC-------CE
Confidence            35789999997532    234445544322111   11 12234455667888899999875543221100       01


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                      .+       .+|+|+.|++|.+++...+ .++....+.++.||+.||+|||++||+||||||+||+++.++.+|++|||+
T Consensus        81 ~~-------l~~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~  152 (266)
T cd06651          81 LT-------IFMEYMPGGSVKDQLKAYG-ALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGA  152 (266)
T ss_pred             EE-------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCC
Confidence            11       3689999999999997654 467778999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++.+......                                                                      
T Consensus       153 ~~~~~~~~~~----------------------------------------------------------------------  162 (266)
T cd06651         153 SKRLQTICMS----------------------------------------------------------------------  162 (266)
T ss_pred             cccccccccc----------------------------------------------------------------------
Confidence            8764310000                                                                      


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                    ........++..|+|||.+.+..++.++|||||||++|||+++   |...
T Consensus       163 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~  212 (266)
T cd06651         163 ------------------------------GTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEY  212 (266)
T ss_pred             ------------------------------CCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCcccc
Confidence                                          0001134578889999999988899999999999999999986   3332


Q ss_pred             HHHHHHHHhccccCCCCCCC-CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          533 RALAAAMSDLRDRILPPSFL-SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~~~~-~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      ....... ........+.++ ..++.+.+|+ .||..+|++||+++||+.||||+
T Consensus       213 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~hp~~~  265 (266)
T cd06651         213 EAMAAIF-KIATQPTNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLRHPFAQ  265 (266)
T ss_pred             chHHHHH-HHhcCCCCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhcCcccc
Confidence            2222222 222222223332 3466777887 67778999999999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.94  E-value=3.9e-27  Score=264.29  Aligned_cols=245  Identities=18%  Similarity=0.224  Sum_probs=176.9

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..++.|+||++....    .+..++.|.... ..........++..+++...|||++.+.+........+          
T Consensus        28 g~g~~g~v~~~~~~~----~~~~~~iK~~~~-~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~----------   92 (285)
T cd06648          28 GEGSTGIVCIATDKS----TGRQVAVKKMDL-RKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELW----------   92 (285)
T ss_pred             ccCCCeEEEEEEECC----CCCEEEEEEEec-cchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEE----------
Confidence            335679999987521    133344433211 11112233445566788889999998776544322222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            ++++|+.|++|.+++..  ..++..+++.++.||+.||+|||++||+||||||+||+++.++.++++|||.++.
T Consensus        93 ------~v~e~~~~~~L~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~  164 (285)
T cd06648          93 ------VVMEFLEGGALTDIVTH--TRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQ  164 (285)
T ss_pred             ------EEEeccCCCCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchh
Confidence                  37999999999999977  3577778999999999999999999999999999999999999999999997754


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       165 ~~~~~---------------------------------------------------------------------------  169 (285)
T cd06648         165 VSKEV---------------------------------------------------------------------------  169 (285)
T ss_pred             hccCC---------------------------------------------------------------------------
Confidence            32100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                  .......|+.+|+|||.+.+..++.++|||||||++|||+++   |..... 
T Consensus       170 ----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~-  220 (285)
T cd06648         170 ----------------------------PRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPP-  220 (285)
T ss_pred             ----------------------------cccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCH-
Confidence                                        000134578899999999988899999999999999999986   333222 


Q ss_pred             HHHHHhccccCCC--CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          536 AAAMSDLRDRILP--PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       536 ~~~~~~~~~~~~p--~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      ...+..+.....+  ......++.+.+|+.+||+++|.+||++.++++||||...++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~~  277 (285)
T cd06648         221 LQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLNHPFLAKAGP  277 (285)
T ss_pred             HHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCcCHHHHccCcccccCCC
Confidence            2223333332211  112235678999999999999999999999999999987654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.94  E-value=3.8e-27  Score=266.12  Aligned_cols=249  Identities=18%  Similarity=0.197  Sum_probs=179.7

Q ss_pred             HHhhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCC
Q 001366          215 FVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTG  294 (1092)
Q Consensus       215 ~~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1092)
                      +.+...+|.|+||++....    .+..++.|+.... .........++...+....|||++..+.....+...+      
T Consensus        26 ~~~ig~g~~g~v~~~~~~~----~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~------   94 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKH----SGRQVAVKMMDLR-KQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELW------   94 (297)
T ss_pred             hhhcCCCCceeEEEEEEcC----CCCEEEEEEEEec-ccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEE------
Confidence            3456667889999987521    2344455443211 1122233445556677889999987666544332222      


Q ss_pred             CCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          295 VPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       295 ~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                                .+|||++|++|.+++...  .++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||
T Consensus        95 ----------iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg  162 (297)
T cd06659          95 ----------VLMEFLQGGALTDIVSQT--RLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFG  162 (297)
T ss_pred             ----------EEEecCCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeech
Confidence                      389999999999988653  57788999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.+....                                                                       
T Consensus       163 ~~~~~~~~~-----------------------------------------------------------------------  171 (297)
T cd06659         163 FCAQISKDV-----------------------------------------------------------------------  171 (297)
T ss_pred             hHhhccccc-----------------------------------------------------------------------
Confidence            876533100                                                                       


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCC---c
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFD---S  531 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~---~  531 (1092)
                                                      .......|+..|+|||.+.+..++.++|||||||++|||+++..   .
T Consensus       172 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~  219 (297)
T cd06659         172 --------------------------------PKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFS  219 (297)
T ss_pred             --------------------------------ccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                                            00013467889999999998889999999999999999998732   2


Q ss_pred             HHHHHHHHHhccccC--CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          532 ERALAAAMSDLRDRI--LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      ..... .+..+....  ........++.+.+|+.+||+.+|.+||++.++++||||.....
T Consensus       220 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~~~~~~~~~  279 (297)
T cd06659         220 DSPVQ-AMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQELLDHPFLLQTGL  279 (297)
T ss_pred             CCHHH-HHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhChhhccCCC
Confidence            22222 222222211  11223345678899999999999999999999999999986543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.94  E-value=3.2e-27  Score=265.72  Aligned_cols=253  Identities=16%  Similarity=0.168  Sum_probs=175.3

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccc-cccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFV-TTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      +.+|.+.+.++  +.|+||+|....    .+..++.|... ............++..++...+|||++.+......... 
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~-   78 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKK----TGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNL-   78 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECC----CCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCC-
Confidence            34566665554  679999998742    23334443322 11111112233456667778899999987665443310 


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                            ..++       ++|||+.+ +|.+++......++..+++.++.||+.||+|||++||+|+||||+||+++.++.
T Consensus        79 ------~~~~-------lv~e~~~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~  144 (293)
T cd07843          79 ------DKIY-------MVMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGI  144 (293)
T ss_pred             ------CcEE-------EEehhcCc-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCc
Confidence                  1112       37999985 999999776666888899999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +|++|||+++......                                                                
T Consensus       145 ~~l~d~g~~~~~~~~~----------------------------------------------------------------  160 (293)
T cd07843         145 LKICDFGLAREYGSPL----------------------------------------------------------------  160 (293)
T ss_pred             EEEeecCceeeccCCc----------------------------------------------------------------
Confidence            9999999887644100                                                                


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHc
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell  526 (1092)
                                                             .......+++.|+|||.+.+. .++.++|||||||++|||+
T Consensus       161 ---------------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~  201 (293)
T cd07843         161 ---------------------------------------KPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELL  201 (293)
T ss_pred             ---------------------------------------cccccccccccccCchhhcCCccccchhhHHHHHHHHHHHH
Confidence                                                   000123467889999998764 4689999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccc----------------------------cCCCCCCCC--CChhHHHHHHhccccCCCCC
Q 001366          527 GR---FDSERALAAAMSDLRD----------------------------RILPPSFLS--ENPKEAGFCLWQLHPEPLSR  573 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~----------------------------~~~p~~~~~--~~~~~~~li~~lL~~dP~~R  573 (1092)
                      ++   |...............                            ..+...+..  .++.+.+|+..||+.+|++|
T Consensus       202 ~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  281 (293)
T cd07843         202 TKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKR  281 (293)
T ss_pred             hCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCcccc
Confidence            86   3222211111110000                            001112333  36778899999999999999


Q ss_pred             CCHHHHhhhhhh
Q 001366          574 PTTREILQSEVT  585 (1092)
Q Consensus       574 psa~eiL~~~~~  585 (1092)
                      ||+.|+|+||||
T Consensus       282 ~t~~ell~~~~f  293 (293)
T cd07843         282 ISAEDALKHPYF  293 (293)
T ss_pred             CCHHHHhcCCCC
Confidence            999999999997

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=8e-26  Score=248.80  Aligned_cols=261  Identities=22%  Similarity=0.344  Sum_probs=217.0

Q ss_pred             cCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCCCCc---ccccceeeecCCCCeEEEEEecCCCCEEEEEECCC
Q 001366          776 NNSANVICSISFDRDE-DHFAAAGVSKKIKIFEFNALFNDSV---DVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG  851 (1092)
Q Consensus       776 ~~h~~~V~sl~fspdg-~~latgg~D~~I~Iwd~~~~~~~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg  851 (1092)
                      ..|.+.|+.+..-|.. .++|+++..+.|.|||.........   .........+|...-.+++|++.....|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            3689999999999865 5778888999999999875322111   22333467788887889999998888999999999


Q ss_pred             cEEEEECCCCc-------eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCC--CceeeeEe-cCCceEEEEE
Q 001366          852 VVKLWDACTGQ-------TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE--KNSLATIK-NIANVCCVQF  921 (1092)
Q Consensus       852 tV~IWD~~tg~-------~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~--~~~l~~l~-~~~~V~sl~f  921 (1092)
                      +|++||+....       ....+.+|+..|..|+|++.+..+|+++++|+.+.|||+|+  .++..... |.+.|+|++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            99999987532       45678899999999999999999999999999999999995  44444444 6889999999


Q ss_pred             ccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC--CCEEEEEECCCeEEEEEcCCCCCCCC------
Q 001366          922 SAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD--SGTLVTASTDNKLKLWDLKRTSHTGP------  993 (1092)
Q Consensus       922 sp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~--~~~L~Sgs~Dg~I~vWDl~~~~~~~~------  993 (1092)
                      +|.+..+||+|+.|++|.+||+|+.+.++.++.+|...|.+|.|+|  ...|+|++.|+.+.|||+.+-.....      
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d  360 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED  360 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence            9999999999999999999999999999999999999999999994  45799999999999999986432211      


Q ss_pred             CCCceeEEEcCCCCCeEEEEEecCCCE-EEEEecCCcEEEEeCC
Q 001366          994 STNACSLTFSGHTNEKNFVGLSTADGY-IACGSESNEVYAYHRS 1036 (1092)
Q Consensus       994 ~~~~~~~~l~~h~~~V~~v~~spdg~~-lasgs~Dg~I~Iwd~~ 1036 (1092)
                      .....+..-.||+..|+.++|+|+..+ |++.++|+.+.||...
T Consensus       361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            123455677799999999999999875 6788899999999754

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.94  E-value=1.5e-27  Score=273.58  Aligned_cols=259  Identities=19%  Similarity=0.192  Sum_probs=198.9

Q ss_pred             cccCCchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhh-HhhhhhhhhhccCCCCCCCcccccee
Q 001366          206 LSKSGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDA-ALKAAGAMMVASNASPKPVGVGTAVV  282 (1092)
Q Consensus       206 ~~~~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (1092)
                      -.+..+..|.+.++++  -.|+|-.+.-.    ..+..++.|+.--+...... .--.++...+...+||||++++..-.
T Consensus        50 ~~~~~vg~y~i~~tig~g~f~~V~La~~~----~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~  125 (596)
T KOG0586|consen   50 DDSNSVGLYVIIKTIGKGNFAKVKLARHI----LTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIE  125 (596)
T ss_pred             cccccccceeeeeeeccceeEEEEeeEec----CCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeee
Confidence            3444555666666654  25777777663    34566777665333332222 12467778888999999999877766


Q ss_pred             cCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE
Q 001366          283 SNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL  362 (1092)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill  362 (1092)
                      ....+++                +|||+.||.|+++|.+.++..+ .++..+|.|+++||+|||+++|+|||||.+||||
T Consensus       126 t~~~lyl----------------V~eya~~ge~~~yl~~~gr~~e-~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL  188 (596)
T KOG0586|consen  126 TEATLYL----------------VMEYASGGELFDYLVKHGRMKE-KEARAKFRQIVSAVEYCHSKNIVHRDLKAENILL  188 (596)
T ss_pred             ecceeEE----------------EEEeccCchhHHHHHhcccchh-hhhhhhhHHHHHHHHHHhhcceeccccchhhccc
Confidence            6666663                8999999999999999988666 6999999999999999999999999999999999


Q ss_pred             ccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccC
Q 001366          363 LQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN  442 (1092)
Q Consensus       363 ~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1092)
                      +.+.++||+|||++..+...                                                            
T Consensus       189 ~~~mnikIaDfgfS~~~~~~------------------------------------------------------------  208 (596)
T KOG0586|consen  189 DENMNIKIADFGFSTFFDYG------------------------------------------------------------  208 (596)
T ss_pred             ccccceeeeccccceeeccc------------------------------------------------------------
Confidence            99999999999998775511                                                            


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHH
Q 001366          443 ESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVL  521 (1092)
Q Consensus       443 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvl  521 (1092)
                                                                  ..+.+.+|++.|+|||++.|..| ++.+|+||||++
T Consensus       209 --------------------------------------------~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvv  244 (596)
T KOG0586|consen  209 --------------------------------------------LMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVV  244 (596)
T ss_pred             --------------------------------------------ccccccCCCCCccChHhhcCcccCCcceehhhhhhh
Confidence                                                        11227799999999999999777 789999999999


Q ss_pred             HHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhcc
Q 001366          522 FFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEV  591 (1092)
Q Consensus       522 l~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~  591 (1092)
                      ||-|+++   |++..-...--..++....-|.+  .+-++.++|.++|.++|.+|++..+|+.|.|++...+.
T Consensus       245 ly~LV~GsLPFDG~~lk~Lr~rvl~gk~rIp~~--ms~dce~lLrk~lvl~Pskr~~~dqim~~~W~n~~~~~  315 (596)
T KOG0586|consen  245 LYALVEGSLPFDGQNLKELRPRVLRGKYRIPFY--MSCDCEDLLRKFLVLNPSKRGPCDQIMKDRWRNDLLEA  315 (596)
T ss_pred             heeeeecccccCCcccccccchheeeeecccce--eechhHHHHHHhhccCccccCCHHHhhhhcccchhhhh
Confidence            9999986   76654333222333333323333  36778899999999999999999999999999987655

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=3.9e-27  Score=259.74  Aligned_cols=241  Identities=16%  Similarity=0.161  Sum_probs=174.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|.||++....    .+..++.|++...... ......++..++...+|||++..+.....+...+           
T Consensus        13 ~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~-~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~-----------   76 (262)
T cd06613          13 SGTYGDVYKARDIA----TGELVAIKVIKLEPGD-DFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLW-----------   76 (262)
T ss_pred             CCCceEEEEeEecC----CCCEEEEEEEEcCchh-hHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEE-----------
Confidence            44778999987632    2344555554322222 2334445566788889999998766544333222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           ++|||+.|++|.+++......++..++..++.|++.||.|||++||+|+||||+||+++.++.+|++|||++...
T Consensus        77 -----l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~  151 (262)
T cd06613          77 -----IVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQL  151 (262)
T ss_pred             -----EEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhh
Confidence                 379999999999999876556888899999999999999999999999999999999999999999999987653


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       152 ~~~~----------------------------------------------------------------------------  155 (262)
T cd06613         152 TATI----------------------------------------------------------------------------  155 (262)
T ss_pred             hhhh----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC---CCCccccchhhhHHHHHHcCCCCc---HH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG---VCTTSSNIYSLGVLFFELFGRFDS---ER  533 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~---~~t~~sDIwSLGvll~ell~~f~~---~~  533 (1092)
                                                 .......++..|+|||.+.+.   .++.++|||||||++|||+++..+   ..
T Consensus       156 ---------------------------~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~  208 (262)
T cd06613         156 ---------------------------AKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH  208 (262)
T ss_pred             ---------------------------hccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence                                       000134678889999999876   789999999999999999986322   22


Q ss_pred             HHHHHHHhccccCCCCC---CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          534 ALAAAMSDLRDRILPPS---FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~---~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      ..............++.   ....++.+.+|+.+||.++|..||++.+|+.|+|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~  262 (262)
T cd06613         209 PMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQHPF  262 (262)
T ss_pred             HHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhcCCC
Confidence            12222111111111111   1223567889999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.4e-25  Score=246.23  Aligned_cols=287  Identities=18%  Similarity=0.235  Sum_probs=229.6

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCC--Cccc------cc-cee-e-ecCCCCeEEEEEecCCCCE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFND--SVDV------YY-PAV-E-MSNRSKLSCVCWNNYIKNY  843 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~--~~~~------~~-~~~-~-~~h~~~V~~v~~sp~~~~~  843 (1092)
                      +..|.-+|+|++++|++++..+++.|++|.=|++.+....  ....      +. +.. . ..|...|.+++.+++ +.+
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D-gky  216 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD-GKY  216 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-CcE
Confidence            3478889999999999999999999999999998753321  0000      11 111 1 368889999999998 999


Q ss_pred             EEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEc
Q 001366          844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFS  922 (1092)
Q Consensus       844 LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fs  922 (1092)
                      ||+|+.|..|.|||..+.+.+..+++|.+.|.+++|-. ....++++|.|++|++|++.....+.++. |+..|..|.-.
T Consensus       217 latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL  295 (479)
T KOG0299|consen  217 LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL  295 (479)
T ss_pred             EEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence            99999999999999999999999999999999999998 77889999999999999999888887765 78889999887


Q ss_pred             cCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCC-ceeEE
Q 001366          923 AHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTN-ACSLT 1001 (1092)
Q Consensus       923 p~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~-~~~~~ 1001 (1092)
                      .-.. .+.+|+.|+++++|++...  ...++.+|.+.+-|++|.+..+++|||.+|.|.+|++.+.++...... ..+..
T Consensus       296 ~reR-~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~  372 (479)
T KOG0299|consen  296 SRER-CVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP  372 (479)
T ss_pred             cccc-eEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccC
Confidence            7663 6777889999999999543  345678999999999999999999999999999999986443221100 00000


Q ss_pred             E---cCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCC----ceeeeeccccCCCCCccccCCCCCCEEEEEEeCCC
Q 001366         1002 F---SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPM----PITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRS 1074 (1092)
Q Consensus      1002 l---~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~----~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~ 1074 (1092)
                      .   -.+..+|++++..|...++|+||.+|.|++|-+..+.    ++..++               -.++|++++|+++|
T Consensus       373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---------------~~GfVNsl~f~~sg  437 (479)
T KOG0299|consen  373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---------------LVGFVNSLAFSNSG  437 (479)
T ss_pred             CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---------------cccEEEEEEEccCC
Confidence            0   1122489999999999999999999999999988762    333322               25789999999999


Q ss_pred             CEEEEEe
Q 001366         1075 DMVVAAN 1081 (1092)
Q Consensus      1075 ~~Lasgs 1081 (1092)
                      ..+++|-
T Consensus       438 k~ivagi  444 (479)
T KOG0299|consen  438 KRIVAGI  444 (479)
T ss_pred             CEEEEec
Confidence            9666653

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.94  E-value=4.8e-27  Score=264.02  Aligned_cols=241  Identities=16%  Similarity=0.193  Sum_probs=166.6

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      ++.|.||+|....    .+..++.|+..............++..++...+|+|++.+.+....+...+            
T Consensus        16 g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~------------   79 (291)
T cd07870          16 GSYATVYKGISRI----NGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLT------------   79 (291)
T ss_pred             cCCEEEEEEEEcC----CCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEE------------
Confidence            3679999987522    244555555432222222223345566777889999987666544332222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          .+|||+. ++|.+++......+...+++.++.||+.||.|||++||+||||||+||+++.++.+|++|||+++...
T Consensus        80 ----lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~  154 (291)
T cd07870          80 ----FVFEYMH-TDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKS  154 (291)
T ss_pred             ----EEEeccc-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccC
Confidence                3789995 67877776544456677889999999999999999999999999999999999999999999886532


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ...                                                                             
T Consensus       155 ~~~-----------------------------------------------------------------------------  157 (291)
T cd07870         155 IPS-----------------------------------------------------------------------------  157 (291)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERALA  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~~  536 (1092)
                                                .......++.+|+|||.+.+ ..++.++|||||||+||||+++   |.......
T Consensus       158 --------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~  211 (291)
T cd07870         158 --------------------------QTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVF  211 (291)
T ss_pred             --------------------------CCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHH
Confidence                                      00012346888999999876 4578999999999999999996   43322211


Q ss_pred             HHHHhc-c--------------------ccCC----CCC------CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          537 AAMSDL-R--------------------DRIL----PPS------FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       537 ~~~~~~-~--------------------~~~~----p~~------~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ...... .                    ....    ++.      .....+.+.+|+.+||..||++|||+.|++.||||
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h~~~  291 (291)
T cd07870         212 EQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALLHPYF  291 (291)
T ss_pred             HHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhcCCCC
Confidence            111110 0                    0000    000      11235678899999999999999999999999997

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.94  E-value=4e-27  Score=265.49  Aligned_cols=250  Identities=13%  Similarity=0.153  Sum_probs=176.0

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCc----hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP----SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTG  294 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1092)
                      ..++.|.||+|....    .+..++.|.+......    ........+...+...+|+|++.+.+....+...+      
T Consensus         9 g~g~~~~vy~~~~~~----~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~------   78 (298)
T cd07841           9 GEGTYAVVYKARDKE----TGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNIN------   78 (298)
T ss_pred             eeccccEEEEEEECC----CCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEE------
Confidence            345789999998632    1344555444322221    11122234556677788999998766654322222      


Q ss_pred             CCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          295 VPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       295 ~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                                ++|||+ +++|.++|......++..+++.++.||++||.|||++||+|+||||+||+++.++.+|++|||
T Consensus        79 ----------lv~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg  147 (298)
T cd07841          79 ----------LVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFG  147 (298)
T ss_pred             ----------EEEccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccce
Confidence                      389999 999999997765468888999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++......                                                                       
T Consensus       148 ~~~~~~~~~-----------------------------------------------------------------------  156 (298)
T cd07841         148 LARSFGSPN-----------------------------------------------------------------------  156 (298)
T ss_pred             eeeeccCCC-----------------------------------------------------------------------
Confidence            887644100                                                                       


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCCCC---
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGRFD---  530 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~f~---  530 (1092)
                                                      .......++.+|+|||.+.+ ..++.++|||||||++|||+++.+   
T Consensus       157 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~  204 (298)
T cd07841         157 --------------------------------RKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLP  204 (298)
T ss_pred             --------------------------------ccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCcccc
Confidence                                            00012345778999999865 467999999999999999998732   


Q ss_pred             cHHHHHHHHHhccc---------------------cCCC-----CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          531 SERALAAAMSDLRD---------------------RILP-----PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       531 ~~~~~~~~~~~~~~---------------------~~~p-----~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      ..............                     ...+     ..+...+..+.+|+.+||.++|++|||+.|+|+|+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~~~  284 (298)
T cd07841         205 GDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEHPY  284 (298)
T ss_pred             CCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhCcc
Confidence            22221111111100                     0000     012334577889999999999999999999999999


Q ss_pred             hhhhhccc
Q 001366          585 TNEFQEVC  592 (1092)
Q Consensus       585 ~~~~~~~~  592 (1092)
                      |.+...+.
T Consensus       285 ~~~~~~~~  292 (298)
T cd07841         285 FSNDPAPT  292 (298)
T ss_pred             ccCCCCCC
Confidence            99875544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.94  E-value=6.4e-27  Score=258.15  Aligned_cols=236  Identities=15%  Similarity=0.123  Sum_probs=168.0

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|+||+|...+     +..++.|.......  ....-..+...+....|||++.+......+...+            
T Consensus        15 G~~~~vy~~~~~~-----~~~~aik~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~------------   75 (256)
T cd05113          15 GQFGVVKYGKWRG-----QYDVAIKMIKEGSM--SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIY------------   75 (256)
T ss_pred             cccceEEEEEecC-----CCcEEEEEcCCCcc--cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcE------------
Confidence            3679999997644     22234433222111  1223345566778889999998766543222222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          .+|||+.|++|.+++......+++..++.++.||+.||.|||+.||+|+||||+||+++.++.+|++|||.++...
T Consensus        76 ----lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~  151 (256)
T cd05113          76 ----IVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVL  151 (256)
T ss_pred             ----EEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecC
Confidence                3899999999999997765567888999999999999999999999999999999999999999999999876543


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      .+..                                                                            
T Consensus       152 ~~~~----------------------------------------------------------------------------  155 (256)
T cd05113         152 DDEY----------------------------------------------------------------------------  155 (256)
T ss_pred             CCce----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERALA  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~  536 (1092)
                                                .......++..|+|||.+.+..++.++|||||||++|||++ +   |.......
T Consensus       156 --------------------------~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~  209 (256)
T cd05113         156 --------------------------TSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSE  209 (256)
T ss_pred             --------------------------eecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH
Confidence                                      00001234567999999998889999999999999999997 4   32222211


Q ss_pred             HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          537 AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       ....+.....++.....++.+.+++.+||+++|.+||++.+|+.+
T Consensus       210 -~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~  254 (256)
T cd05113         210 -TVEKVSQGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSS  254 (256)
T ss_pred             -HHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHh
Confidence             122222222222233347889999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.94  E-value=7.5e-27  Score=257.87  Aligned_cols=247  Identities=16%  Similarity=0.136  Sum_probs=167.9

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||+|...+.-.. ...++.|.............-..+..++....|||++..+......        .+.+.  
T Consensus         5 ~g~~g~v~~~~~~~~~~~-~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--------~~~~~--   73 (262)
T cd05058           5 KGHFGCVYHGTLIDSDGQ-KIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPS--------EGSPL--   73 (262)
T ss_pred             ccCCceEEEEEEecCCCc-eEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecC--------CCCcE--
Confidence            457899999875321111 2233444332211112223334555677888999999766532211        11112  


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|+|+.+++|.+++.......+...++.++.||+.||+|||++||+||||||+|||++.++.+|++|||+++.+
T Consensus        74 -----lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~  148 (262)
T cd05058          74 -----VVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDI  148 (262)
T ss_pred             -----EEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccc
Confidence                 379999999999999776556677788899999999999999999999999999999999999999999988754


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      .+....                                                                          
T Consensus       149 ~~~~~~--------------------------------------------------------------------------  154 (262)
T cd05058         149 YDKEYY--------------------------------------------------------------------------  154 (262)
T ss_pred             cCCcce--------------------------------------------------------------------------
Confidence            310000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC----CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR----FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~----f~~~~~~  535 (1092)
                                               .........++..|+|||.+.+..++.++|||||||++|||+++    |......
T Consensus       155 -------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~  209 (262)
T cd05058         155 -------------------------SVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSF  209 (262)
T ss_pred             -------------------------eecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence                                     00000122345679999999888899999999999999999983    2222222


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      . ....+.....++.....++.+.+++..||+++|++||++.+|+..
T Consensus       210 ~-~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~  255 (262)
T cd05058         210 D-ITVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSR  255 (262)
T ss_pred             H-HHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence            2 222222222222222346778899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.94  E-value=2.3e-27  Score=266.44  Aligned_cols=242  Identities=16%  Similarity=0.215  Sum_probs=168.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|.||+|....    .+..++.|...............++..++...+|||++.+.+....+...+           
T Consensus        15 ~g~~~~vy~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   79 (291)
T cd07844          15 EGSYATVYKGRSKL----TGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLT-----------   79 (291)
T ss_pred             ecCCeEEEEEEEcC----CCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEE-----------
Confidence            34689999998632    234445544322211111122345677788889999998776654333222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|||+.+ +|.+++......++...++.++.||+.||.|||++||+||||||+||+++.++.+|++|||+++..
T Consensus        80 -----lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~  153 (291)
T cd07844          80 -----LVFEYLDT-DLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAK  153 (291)
T ss_pred             -----EEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECcccccccc
Confidence                 27999986 999999776667788899999999999999999999999999999999999999999999987642


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ..+.                                                                            
T Consensus       154 ~~~~----------------------------------------------------------------------------  157 (291)
T cd07844         154 SVPS----------------------------------------------------------------------------  157 (291)
T ss_pred             CCCC----------------------------------------------------------------------------
Confidence            2000                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                 .......++..|+|||.+.+ ..++.++|||||||++|||+++   |......
T Consensus       158 ---------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~  210 (291)
T cd07844         158 ---------------------------KTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDV  210 (291)
T ss_pred             ---------------------------ccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccH
Confidence                                       00002235677999999876 5589999999999999999986   4322211


Q ss_pred             -HH---HHHhccc---c-----------------CC-C----CCCCCCC--hhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          536 -AA---AMSDLRD---R-----------------IL-P----PSFLSEN--PKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       536 -~~---~~~~~~~---~-----------------~~-p----~~~~~~~--~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                       ..   ....+..   .                 .. +    ..+....  +.+.+|+.+||+++|.+|||+.++|+|||
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~~~~  290 (291)
T cd07844         211 EDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKHPY  290 (291)
T ss_pred             HHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhcCCC
Confidence             11   1110000   0                 00 0    0111223  77789999999999999999999999999


Q ss_pred             h
Q 001366          585 T  585 (1092)
Q Consensus       585 ~  585 (1092)
                      |
T Consensus       291 f  291 (291)
T cd07844         291 F  291 (291)
T ss_pred             C
Confidence            7

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.2e-26  Score=247.45  Aligned_cols=280  Identities=14%  Similarity=0.234  Sum_probs=229.5

Q ss_pred             eecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          774 EFNNSANVICSISFDRDE-DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg-~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      .|.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+..       -.+......|.+.|..|++..   ..+++++.|++
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-------R~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKt  130 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-------RECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKT  130 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhh-------hhhhheeecccCceeeEEecc---cceEEecCCcc
Confidence            356999999999999987 7899999999999999975       223345567899999999976   57889999999


Q ss_pred             EEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec-CCceEEEEEccCCCeEEEE
Q 001366          853 VKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN-IANVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~-~~~V~sl~fsp~~~~~lat  931 (1092)
                      |+.|.+.- ..+.++.+ ...+..++-+. ....++|||.+  |.|||.+...++.++.- ...|.++.|+|....+|++
T Consensus       131 vK~wk~~~-~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas  205 (433)
T KOG0268|consen  131 VKQWKIDG-PPLHTILG-KSVYLGIDHHR-KNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILAS  205 (433)
T ss_pred             eeeeeccC-Ccceeeec-ccccccccccc-ccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheee
Confidence            99999754 56666653 44577887776 66789999864  89999999999999984 5679999999998889999


Q ss_pred             EECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCC-EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeE
Q 001366          932 GSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSG-TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN 1010 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~-~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~ 1010 (1092)
                      +..|+.|.+||+|...+...+..  ...-..|+|+|.. .+++|+.|..+..||++..       ..++..+.+|.+.|.
T Consensus       206 ~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l-------~~p~~v~~dhvsAV~  276 (433)
T KOG0268|consen  206 CASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL-------SRPLNVHKDHVSAVM  276 (433)
T ss_pred             eccCCceEEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhh-------cccchhhcccceeEE
Confidence            99999999999998875444332  2334678999644 4789999999999999953       356778889999999


Q ss_pred             EEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1011 FVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1011 ~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      +|+|||.|+-+++||.|.+|+||....+..--.+.             +..-+.|.+|.|+.|++++++||.|+.|++|.
T Consensus       277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh-------------tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH-------------TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             EeccCCCcchhccccccceEEEeecCCCcchhhhh-------------HhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            99999999999999999999999876543221111             22246799999999999999999999999996

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.94  E-value=5.1e-27  Score=264.04  Aligned_cols=251  Identities=16%  Similarity=0.094  Sum_probs=172.3

Q ss_pred             hHHHhhhc--cccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      +|.++..+  +|.|.||++...+.- ...+..++.+...... ........++...+....|||++.+........... 
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-   83 (291)
T cd05094           6 DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT-LAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLI-   83 (291)
T ss_pred             HeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCcc-HHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceE-
Confidence            34444333  368999998742210 0112233333332211 111222344556778889999998766544322222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccC
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLD  354 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrD  354 (1092)
                                     .+|||+.|++|.++|...+               ..++...++.++.||+.||.|||++||+|||
T Consensus        84 ---------------lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~d  148 (291)
T cd05094          84 ---------------MVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRD  148 (291)
T ss_pred             ---------------EEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecc
Confidence                           3899999999999997543               2367778999999999999999999999999


Q ss_pred             CCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCcc
Q 001366          355 LKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKY  434 (1092)
Q Consensus       355 LKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (1092)
                      |||+||+++.++.+|++|||+++........                                                 
T Consensus       149 lkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~-------------------------------------------------  179 (291)
T cd05094         149 LATRNCLVGANLLVKIGDFGMSRDVYSTDYY-------------------------------------------------  179 (291)
T ss_pred             cCcceEEEccCCcEEECCCCcccccCCCcee-------------------------------------------------
Confidence            9999999999999999999988764311000                                                 


Q ss_pred             CCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCcccc
Q 001366          435 GNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSN  514 (1092)
Q Consensus       435 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sD  514 (1092)
                                                                          ..-....++..|+|||.+.+..++.++|
T Consensus       180 ----------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~D  207 (291)
T cd05094         180 ----------------------------------------------------RVGGHTMLPIRWMPPESIMYRKFTTESD  207 (291)
T ss_pred             ----------------------------------------------------ecCCCCCcceeecChHHhccCCCCchhh
Confidence                                                                0001234567799999999989999999


Q ss_pred             chhhhHHHHHHcC-CCCc---HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          515 IYSLGVLFFELFG-RFDS---ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       515 IwSLGvll~ell~-~f~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||||||++|||++ +..+   .... ..+..+.....+......+..+.+|+.+||+++|.+||++.++++.
T Consensus       208 i~slG~il~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~  278 (291)
T cd05094         208 VWSFGVILWEIFTYGKQPWFQLSNT-EVIECITQGRVLERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKI  278 (291)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHhCCCCCCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence            9999999999997 5222   2221 2222233333333333456789999999999999999999999763

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.94  E-value=5.3e-27  Score=258.42  Aligned_cols=244  Identities=18%  Similarity=0.132  Sum_probs=171.0

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.+.+.+  +|.|+||++...+     +..++.|......  .....-..+..++....|||++..+.....+...+  
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~-----~~~~a~K~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~--   75 (256)
T cd05114           5 ELTFMKELGSGQFGVVHLGKWRA-----QIKVAIKAINEGA--MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLY--   75 (256)
T ss_pred             HcEEeeEecCCcCceEEEEEecc-----CceEEEEecccCC--ccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEE--
Confidence            44444434  4789999997744     2234444332111  11222334566788889999998665543322222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    ++|+|++|++|.+++......++...++.++.||+.||+|||++||+||||||+||+++.++.+|+
T Consensus        76 --------------iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl  141 (256)
T cd05114          76 --------------IVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKV  141 (256)
T ss_pred             --------------EEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEE
Confidence                          389999999999999765446788889999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.......                                                                  
T Consensus       142 ~d~g~~~~~~~~~~------------------------------------------------------------------  155 (256)
T cd05114         142 SDFGMTRYVLDDEY------------------------------------------------------------------  155 (256)
T ss_pred             CCCCCccccCCCce------------------------------------------------------------------
Confidence            99998865431000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......++..|+|||.+.+..++.++|||||||++|||++ + 
T Consensus       156 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~  199 (256)
T cd05114         156 ------------------------------------TSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGK  199 (256)
T ss_pred             ------------------------------------eccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCC
Confidence                                                00001223456999999998889999999999999999998 4 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                        |.......... .+.....+......++.+.+|+.+||..+|.+||++.++++.
T Consensus       200 ~p~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~  254 (256)
T cd05114         200 MPFEKKSNYEVVE-MISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRA  254 (256)
T ss_pred             CCCCCCCHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence              43332222222 222222222222346778999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1e-24  Score=260.55  Aligned_cols=250  Identities=15%  Similarity=0.148  Sum_probs=190.6

Q ss_pred             EeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc--------eEEEee
Q 001366          797 AGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ--------TVSHYI  868 (1092)
Q Consensus       797 gg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~--------~i~~l~  868 (1092)
                      ||.++.|++|+....       .......+|...|.+++|+|+.+.+||||+.||+|+|||+.++.        .+..+.
T Consensus        50 GG~~gvI~L~~~~r~-------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~  122 (568)
T PTZ00420         50 GGLIGAIRLENQMRK-------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK  122 (568)
T ss_pred             CCceeEEEeeecCCC-------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence            677889999997541       12234567999999999999767899999999999999997642        345678


Q ss_pred             ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc
Q 001366          869 EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA  948 (1092)
Q Consensus       869 ~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~  948 (1092)
                      +|...|.+++|+|....+|++|+.|++|+|||++++..+..+.+...|.+++|+|+|. +|++++.|+.|++||++++..
T Consensus       123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcE
Confidence            9999999999999444467899999999999999999888888788899999999996 889999999999999998764


Q ss_pred             ceEEecCCCCCeEEEE-----Ec-CCCEEEEEECCC----eEEEEEcCCCCCCCCCCCceeEEE--cCCCCCeEEEEEec
Q 001366          949 PWCVLAGHEKAVSYVK-----FL-DSGTLVTASTDN----KLKLWDLKRTSHTGPSTNACSLTF--SGHTNEKNFVGLST 1016 (1092)
Q Consensus       949 ~~~~l~~H~~~V~~v~-----fs-~~~~L~Sgs~Dg----~I~vWDl~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~sp 1016 (1092)
                       +..+.+|.+.+.+..     |+ ++++|+|++.|+    +|+|||+++.       ..++..+  ..+...+......+
T Consensus       202 -i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~-------~~pl~~~~ld~~~~~L~p~~D~~  273 (568)
T PTZ00420        202 -ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT-------TSALVTMSIDNASAPLIPHYDES  273 (568)
T ss_pred             -EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC-------CCceEEEEecCCccceEEeeeCC
Confidence             567889987654332     33 567888888774    7999999853       2334333  33334333343455


Q ss_pred             CCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCC
Q 001366         1017 ADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD 1075 (1092)
Q Consensus      1017 dg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~ 1075 (1092)
                      +|.++++|+.|+.|++|++..+.......             -.+..++.+++|.|+..
T Consensus       274 tg~l~lsGkGD~tIr~~e~~~~~~~~l~~-------------~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        274 TGLIYLIGKGDGNCRYYQHSLGSIRKVNE-------------YKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             CCCEEEEEECCCeEEEEEccCCcEEeecc-------------cccCCCccceEEccccc
Confidence            68899999999999999987653211111             12456678888888643

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.1e-26  Score=247.58  Aligned_cols=286  Identities=19%  Similarity=0.253  Sum_probs=234.5

Q ss_pred             hhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 001366          726 LRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKI  805 (1092)
Q Consensus       726 l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~I  805 (1092)
                      |.+|.+-+..++... ..+....++++||.+++|++.+-++...     +..|.+.|..|+++.  ..++++|.|++|+.
T Consensus        62 L~gHrdGV~~lakhp-~~ls~~aSGs~DG~VkiWnlsqR~~~~~-----f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHP-NKLSTVASGSCDGEVKIWNLSQRECIRT-----FKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             ccccccccchhhcCc-chhhhhhccccCceEEEEehhhhhhhhe-----eecccCceeeEEecc--cceEEecCCcceee
Confidence            567776666554311 1123456889999999999887665543     558999999999987  67899999999999


Q ss_pred             EEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCC
Q 001366          806 FEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPT  885 (1092)
Q Consensus       806 wd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~  885 (1092)
                      |.+...         +...+-.++.+..+.-+.. .+.++||+.  .|.|||.....++..+......|.++.|+|....
T Consensus       134 wk~~~~---------p~~tilg~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETs  201 (433)
T KOG0268|consen  134 WKIDGP---------PLHTILGKSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETS  201 (433)
T ss_pred             eeccCC---------cceeeeccccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcch
Confidence            998651         3344445677788876665 678899885  5999999988999999988899999999998889


Q ss_pred             EEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEE
Q 001366          886 KLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKF  965 (1092)
Q Consensus       886 ~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~f  965 (1092)
                      +|++|..|++|.+||++++.++..+-....-+.|+|+|.. ..|++|+.|..++.||+|....++.+..+|.++|.+|.|
T Consensus       202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf  280 (433)
T KOG0268|consen  202 ILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF  280 (433)
T ss_pred             heeeeccCCceEEEecccCCccceeeeeccccceecCccc-cceeeccccccceehhhhhhcccchhhcccceeEEEecc
Confidence            9999999999999999999999988888888899999955 689999999999999999999999999999999999999


Q ss_pred             c-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCC
Q 001366          966 L-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPM 1039 (1092)
Q Consensus       966 s-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~ 1039 (1092)
                      + .|+.++|||.|.+|+||.++.+..     ....++  ..-..|.+|.||.|.+||+|||+|+.|++|...-.+
T Consensus       281 sptG~EfvsgsyDksIRIf~~~~~~S-----RdiYht--kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  281 SPTGQEFVSGSYDKSIRIFPVNHGHS-----RDIYHT--KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             CCCcchhccccccceEEEeecCCCcc-----hhhhhH--hhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            9 677899999999999999984321     111111  123468999999999999999999999999755433

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.94  E-value=6.2e-27  Score=257.98  Aligned_cols=243  Identities=18%  Similarity=0.154  Sum_probs=175.7

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|.||++....    .+..++.|+........ ....-..+...+...+|||++.+++.......       ...   
T Consensus        11 g~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-------~~~---   76 (265)
T cd08217          11 GSFGTVRKVRRKS----DGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSN-------QTL---   76 (265)
T ss_pred             CCCeEEEEeeecC----CCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCC-------CEE---
Confidence            4789999987532    23344444432222222 22233345567788899999976554321110       001   


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhh-----hcCccccCCCCCCeEEccCCcEEEe
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR---GHKGKRIECLYIFRQIVALVDYHH-----TQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~---~~~~~~~~~~~i~~qil~~l~~lH-----s~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                          ..+|||+.|++|.+++...   ...++..+++.++.||+.||+|+|     +.+|+|+||||+||+++.++.+|++
T Consensus        77 ----~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~  152 (265)
T cd08217          77 ----YIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLG  152 (265)
T ss_pred             ----EEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEe
Confidence                1379999999999999654   456788899999999999999999     9999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.+....                                                                    
T Consensus       153 d~g~~~~~~~~~--------------------------------------------------------------------  164 (265)
T cd08217         153 DFGLAKILGHDS--------------------------------------------------------------------  164 (265)
T ss_pred             cccccccccCCc--------------------------------------------------------------------
Confidence            999887643100                                                                    


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                         .......|++.|+|||.+.+..++.++|+|||||++|+|+++   
T Consensus       165 -----------------------------------~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p  209 (265)
T cd08217         165 -----------------------------------SFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPP  209 (265)
T ss_pred             -----------------------------------ccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCc
Confidence                                               000134578889999999998899999999999999999986   


Q ss_pred             CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          529 FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      |.... .......+.....++.....++.+.+++.+||..+|.+||++.+||+|||+
T Consensus       210 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~~~~  265 (265)
T cd08217         210 FTARN-QLQLASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQLPLI  265 (265)
T ss_pred             ccCcC-HHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHhhCCCC
Confidence            33322 222233333333333334557889999999999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.94  E-value=6.5e-27  Score=258.50  Aligned_cols=244  Identities=17%  Similarity=0.143  Sum_probs=177.1

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++....    .+..++.|+......  ......-..+.+++....|||++.+.+....+...+         
T Consensus         3 ~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~---------   69 (262)
T cd05572           3 VGGFGRVELVKVKS----KNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIY---------   69 (262)
T ss_pred             CCCceEEEEEEECC----CCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccE---------
Confidence            35789999998742    234455554422111  112233445566778889999998766544333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+|||++|++|.++|.... .++...++.++.||+.||.|||++|++|+||||+||+++.++.++++|||+++
T Consensus        70 -------lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~  141 (262)
T cd05572          70 -------MLMEYCLGGELWTILRDRG-LFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAK  141 (262)
T ss_pred             -------EEEecCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCccc
Confidence                   3799999999999997654 46777899999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       142 ~~~~~~--------------------------------------------------------------------------  147 (262)
T cd05572         142 KLKSGQ--------------------------------------------------------------------------  147 (262)
T ss_pred             ccCccc--------------------------------------------------------------------------
Confidence            643100                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH-
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER-  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~-  533 (1092)
                                                    ......|++.|+|||.+.+..++.++|+|||||++|||+++   |.... 
T Consensus       148 ------------------------------~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  197 (262)
T cd05572         148 ------------------------------KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDE  197 (262)
T ss_pred             ------------------------------ccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCC
Confidence                                          00023577889999999888899999999999999999986   33222 


Q ss_pred             -HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          534 -ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       534 -~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                       ..............++.....++.+.+|+.+||+++|.+||+     +.|+++||||.+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~  258 (262)
T cd05572         198 DPMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNGF  258 (262)
T ss_pred             CHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhcChhhhCC
Confidence             222222222111122222233788999999999999999999     9999999999763

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.94  E-value=9.8e-27  Score=258.40  Aligned_cols=250  Identities=13%  Similarity=0.023  Sum_probs=169.6

Q ss_pred             hccccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|.|+||+|...+.-.  ...++.|..... ........-.++...+...+|||++.++..........   ....+.
T Consensus         8 g~G~~g~V~~~~~~~~~~--~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~---~~~~~~   82 (272)
T cd05075           8 GEGEFGSVMEGQLNQDDS--ILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESE---GYPSPV   82 (272)
T ss_pred             CcccCceEEEeEEccCCC--eeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCccc---CCCCcE
Confidence            345789999998743111  112333333211 11222233344556677889999998665432111100   011112


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhc-----CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEec
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNAR-----GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIG  372 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~-----~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~D  372 (1092)
                             .+|+|+.+++|.+++...     ...++...++.++.||+.||+|||++||+||||||+|||++.++.+|++|
T Consensus        83 -------~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~D  155 (272)
T cd05075          83 -------VILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVAD  155 (272)
T ss_pred             -------EEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECC
Confidence                   379999999999998432     23467778999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||+++.+......                                                                   
T Consensus       156 fg~~~~~~~~~~~-------------------------------------------------------------------  168 (272)
T cd05075         156 FGLSKKIYNGDYY-------------------------------------------------------------------  168 (272)
T ss_pred             CCcccccCcccce-------------------------------------------------------------------
Confidence            9998764310000                                                                   


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---  528 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---  528 (1092)
                                                        ..-....+++.|+|||.+.+..++.++|||||||++|||++ +   
T Consensus       169 ----------------------------------~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p  214 (272)
T cd05075         169 ----------------------------------RQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTP  214 (272)
T ss_pred             ----------------------------------ecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCC
Confidence                                              00001234566999999999889999999999999999997 3   


Q ss_pred             CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |..... ......+.....++........+.+++.+||+++|.+|||+.+|++.
T Consensus       215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  267 (272)
T cd05075         215 YPGVEN-SEIYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCE  267 (272)
T ss_pred             CCCCCH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            433322 22333333333333334556788999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.94  E-value=3.9e-27  Score=261.82  Aligned_cols=233  Identities=17%  Similarity=0.108  Sum_probs=168.0

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..++.|.||++...    ..+...+.++....... .......  .+  ..+|||++.++.....+...+          
T Consensus        25 g~g~~g~v~~~~~~----~~~~~~~~k~~~~~~~~-~~e~~~~--~~--~~~h~~iv~~~~~~~~~~~~~----------   85 (267)
T PHA03390         25 IDGKFGKVSVLKHK----PTQKLFVQKIIKAKNFN-AIEPMVH--QL--MKDNPNFIKLYYSVTTLKGHV----------   85 (267)
T ss_pred             cCCCceEEEEEEEc----CCCcEEEEEEEehhhcc-hhhHHHH--HH--hhcCCCEEEEEEEEecCCeeE----------
Confidence            34468999988752    22444445444221111 1111111  11  236899998776655444333          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC-cEEEecccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN-QVKYIGPIIQK  377 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~-~vkl~Dfg~~~  377 (1092)
                            .+|||++|++|.++++..+ .++..+++.++.||+.||.|||++||+||||||+||+++.++ .++++|||+++
T Consensus        86 ------iv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~  158 (267)
T PHA03390         86 ------LIMDYIKDGDLFDLLKKEG-KLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCK  158 (267)
T ss_pred             ------EEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccce
Confidence                  3899999999999998765 678889999999999999999999999999999999999998 99999999876


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .....                                                                           
T Consensus       159 ~~~~~---------------------------------------------------------------------------  163 (267)
T PHA03390        159 IIGTP---------------------------------------------------------------------------  163 (267)
T ss_pred             ecCCC---------------------------------------------------------------------------
Confidence            53200                                                                           


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                      ....|+..|+|||.+.+..++.++|||||||++|||+++   |.....
T Consensus       164 --------------------------------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~  211 (267)
T PHA03390        164 --------------------------------SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDED  211 (267)
T ss_pred             --------------------------------ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCc
Confidence                                            012467789999999998899999999999999999986   322111


Q ss_pred             ----HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-HHHHhhhhhhh
Q 001366          535 ----LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-TREILQSEVTN  586 (1092)
Q Consensus       535 ----~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-a~eiL~~~~~~  586 (1092)
                          ........  ...++.....++.+.+||.+||+++|.+||+ +.+||+||||.
T Consensus       212 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~h~~~~  266 (267)
T PHA03390        212 EELDLESLLKRQ--QKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIKHPFLK  266 (267)
T ss_pred             chhhHHHHHHhh--cccCCcccccCHHHHHHHHHHhccChhhCCchHHHHhcCCccc
Confidence                11111111  1222333357899999999999999999996 59999999995

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.94  E-value=5.5e-27  Score=259.17  Aligned_cols=247  Identities=14%  Similarity=0.146  Sum_probs=176.9

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||+|...+    .+..++.|+..............++...+...+|+|++.+......+...            
T Consensus        11 ~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~------------   74 (267)
T cd06610          11 VGATAVVYAAICLP----NNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDEL------------   74 (267)
T ss_pred             CCCCeEEEEEEEcC----CCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEE------------
Confidence            45789999998532    24455555553322233444455566677888999988765443322111            


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARG--HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~--~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                          ..+|++++|++|.+++....  ..+++..+..++.||+.||.|||++||+||||||+||++++++.+|++|||++.
T Consensus        75 ----~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~  150 (267)
T cd06610          75 ----WLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSA  150 (267)
T ss_pred             ----EEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHH
Confidence                14899999999999997642  357888999999999999999999999999999999999999999999999887


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+......                                                                        
T Consensus       151 ~~~~~~~~------------------------------------------------------------------------  158 (267)
T cd06610         151 SLADGGDR------------------------------------------------------------------------  158 (267)
T ss_pred             HhccCccc------------------------------------------------------------------------
Confidence            65421000                                                                        


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                 .........|+..|+|||.+... .++.++|+|||||++|||++|   |....
T Consensus       159 ---------------------------~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~  211 (267)
T cd06610         159 ---------------------------TRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYP  211 (267)
T ss_pred             ---------------------------cccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccC
Confidence                                       00001134678899999998876 789999999999999999997   32222


Q ss_pred             HHHHHHHhccccC--CCCC--CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          534 ALAAAMSDLRDRI--LPPS--FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       534 ~~~~~~~~~~~~~--~p~~--~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ........+....  ++..  ....++.+.+|+.+||+.+|.+||++.+|++||||
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~p~~  267 (267)
T cd06610         212 PMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKHKFF  267 (267)
T ss_pred             hhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhhCCCC
Confidence            2222222222211  1111  12446788999999999999999999999999997

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.94  E-value=6.4e-27  Score=264.10  Aligned_cols=247  Identities=14%  Similarity=0.052  Sum_probs=166.8

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      +|.+.+.+  +|.|+||+|...+.-..  ..++.+++..............+...+... .|||++.++.....+...+ 
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~--~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~-   79 (297)
T cd05089           3 DIKFEDVIGEGNFGQVIRAMIKKDGLK--MNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLY-   79 (297)
T ss_pred             cceeeeeecCCCcceEEEEEecCCCCc--ceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcce-
Confidence            34444333  47899999976331110  112222222111111222233344455555 7999998766544332222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccC
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLD  354 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrD  354 (1092)
                                     .+|+|+.+++|.++|....               ..++...++.++.||+.||+|||++||+|||
T Consensus        80 ---------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~d  144 (297)
T cd05089          80 ---------------IAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRD  144 (297)
T ss_pred             ---------------EEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCc
Confidence                           3799999999999996532               2467778999999999999999999999999


Q ss_pred             CCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCcc
Q 001366          355 LKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKY  434 (1092)
Q Consensus       355 LKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (1092)
                      |||+|||++.++.+|++|||++.......                                                   
T Consensus       145 lkp~Nill~~~~~~kl~dfg~~~~~~~~~---------------------------------------------------  173 (297)
T cd05089         145 LAARNVLVGENLASKIADFGLSRGEEVYV---------------------------------------------------  173 (297)
T ss_pred             CCcceEEECCCCeEEECCcCCCcccccee---------------------------------------------------
Confidence            99999999999999999999875321000                                                   


Q ss_pred             CCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCcccc
Q 001366          435 GNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSN  514 (1092)
Q Consensus       435 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sD  514 (1092)
                                                                          . ......+..|+|||.+.+..++.++|
T Consensus       174 ----------------------------------------------------~-~~~~~~~~~y~aPE~~~~~~~~~~~D  200 (297)
T cd05089         174 ----------------------------------------------------K-KTMGRLPVRWMAIESLNYSVYTTKSD  200 (297)
T ss_pred             ----------------------------------------------------c-cCCCCcCccccCchhhccCCCCchhh
Confidence                                                                0 00011234599999998888999999


Q ss_pred             chhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          515 IYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       515 IwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||||||++|||++ +   |........ ...+.....++.....++.+.+|+.+||..+|.+||++.++++.
T Consensus       201 vwSlG~il~el~t~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~  271 (297)
T cd05089         201 VWSFGVLLWEIVSLGGTPYCGMTCAEL-YEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQ  271 (297)
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCCHHHH-HHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            9999999999996 4   433322222 22223333333334567889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.94  E-value=7.8e-27  Score=257.39  Aligned_cols=243  Identities=12%  Similarity=0.032  Sum_probs=171.2

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchh-hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|.|.||+|....  ...+..++.|+......... ......+..++....|||++..+.....+..           
T Consensus         4 g~G~~g~v~~~~~~~--~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~-----------   70 (257)
T cd05116           4 GSGNFGTVKKGMYKM--KKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAESW-----------   70 (257)
T ss_pred             CCcCCcceEEeEEec--CCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCc-----------
Confidence            356789999985421  12234455555433322222 2223445566778899999986654321111           


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                            -.+|||+.+++|.+++.... .++...++.++.||+.||+|+|++||+||||||+||+++.++.+|++|||+++
T Consensus        71 ------~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~  143 (257)
T cd05116          71 ------MLVMELAELGPLNKFLQKNK-HVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSK  143 (257)
T ss_pred             ------EEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCcccc
Confidence                  13799999999999997654 57777999999999999999999999999999999999999999999999887


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+......                                                                        
T Consensus       144 ~~~~~~~~------------------------------------------------------------------------  151 (257)
T cd05116         144 ALGADENY------------------------------------------------------------------------  151 (257)
T ss_pred             ccCCCCCe------------------------------------------------------------------------
Confidence            64411000                                                                        


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~  533 (1092)
                                                  ........++..|+|||.+....++.++|||||||++|||++ +   |....
T Consensus       152 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  203 (257)
T cd05116         152 ----------------------------YKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMK  203 (257)
T ss_pred             ----------------------------eeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence                                        000001234567999999988889999999999999999996 4   33322


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .. .....+.....++.....++++.+||.+||.++|.+||++.+|.+.
T Consensus       204 ~~-~~~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~  251 (257)
T cd05116         204 GN-EVTQMIESGERMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVELR  251 (257)
T ss_pred             HH-HHHHHHHCCCCCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHHH
Confidence            22 2223333333334444568899999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.94  E-value=6.2e-27  Score=274.80  Aligned_cols=246  Identities=14%  Similarity=0.136  Sum_probs=169.7

Q ss_pred             hccccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccCC-CCCCCccccceecCCCCCCCccCCCC
Q 001366          219 TLKGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNA-SPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      ..+|.|+||+|.....- ......++.|+............-.++...+.... |||++.++.........+        
T Consensus        46 G~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~--------  117 (400)
T cd05105          46 GSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIY--------  117 (400)
T ss_pred             cCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCceE--------
Confidence            34578999998741100 00112355555432222222233444556666664 999998776654333333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcC-----------------------------------------------------
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARG-----------------------------------------------------  323 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~-----------------------------------------------------  323 (1092)
                              .+||||+||+|.++|....                                                     
T Consensus       118 --------lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (400)
T cd05105         118 --------IITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYV  189 (400)
T ss_pred             --------EEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccc
Confidence                    3899999999999985421                                                     


Q ss_pred             ------------------------------------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeE
Q 001366          324 ------------------------------------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFK  361 (1092)
Q Consensus       324 ------------------------------------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nil  361 (1092)
                                                                ..++..+++.++.||+.||+|||++||+||||||+|||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nil  269 (400)
T cd05105         190 PMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVL  269 (400)
T ss_pred             hhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEE
Confidence                                                      13556678899999999999999999999999999999


Q ss_pred             EccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          362 LLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       362 l~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      ++.++.+|++|||+++.......                                                         
T Consensus       270 l~~~~~~kL~DfGla~~~~~~~~---------------------------------------------------------  292 (400)
T cd05105         270 LAQGKIVKICDFGLARDIMHDSN---------------------------------------------------------  292 (400)
T ss_pred             EeCCCEEEEEeCCcceecccccc---------------------------------------------------------
Confidence            99999999999999876431000                                                         


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                                                                  ........++..|+|||.+.+..++.++|||||||+
T Consensus       293 --------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvi  328 (400)
T cd05105         293 --------------------------------------------YVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGIL  328 (400)
T ss_pred             --------------------------------------------ccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHH
Confidence                                                        000012346677999999999899999999999999


Q ss_pred             HHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          522 FFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       522 l~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ||||++ +   |+...........+.....++.....++.+.+++.+||..+|++||++.+|.+
T Consensus       329 l~ellt~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~  392 (400)
T cd05105         329 LWEIFSLGGTPYPGMIVDSTFYNKIKSGYRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSD  392 (400)
T ss_pred             HHHHHHCCCCCCcccchhHHHHHHHhcCCCCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHH
Confidence            999985 3   33322222223333333333333445678899999999999999999998876

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.94  E-value=6.7e-27  Score=257.30  Aligned_cols=211  Identities=19%  Similarity=0.244  Sum_probs=165.0

Q ss_pred             hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHH
Q 001366          255 DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLY  333 (1092)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~  333 (1092)
                      ......++...++..+|+|++.+++....+....                .+||||.|++|.+++... +..++..++..
T Consensus        42 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~----------------~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~  105 (256)
T cd08221          42 ERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLL----------------IEMEYANGGTLYDKIVRQKGQLFEEEMVLW  105 (256)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEE----------------EEEEecCCCcHHHHHHhccccCCCHHHHHH
Confidence            3344566777888889999998777655433222                379999999999999764 45678889999


Q ss_pred             HHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchh
Q 001366          334 IFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAK  413 (1092)
Q Consensus       334 i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  413 (1092)
                      ++.|++.+|.|||++||+|+||||+||+++.++.+|++|||+++......                              
T Consensus       106 ~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~------------------------------  155 (256)
T cd08221         106 YLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEY------------------------------  155 (256)
T ss_pred             HHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEccccc------------------------------
Confidence            99999999999999999999999999999999999999999886543100                              


Q ss_pred             hcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCccccccccccccccccc
Q 001366          414 KQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQL  493 (1092)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (1092)
                                                                                               .......
T Consensus       156 -------------------------------------------------------------------------~~~~~~~  162 (256)
T cd08221         156 -------------------------------------------------------------------------SMAETVV  162 (256)
T ss_pred             -------------------------------------------------------------------------ccccccC
Confidence                                                                                     0001346


Q ss_pred             ccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCC
Q 001366          494 EEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEP  570 (1092)
Q Consensus       494 gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP  570 (1092)
                      |++.|+|||.+.+..++.++|+|||||++|||+++   |...... .....+....+++.....+.++.+|+.+||+++|
T Consensus       163 ~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p  241 (256)
T cd08221         163 GTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPL-NLVVKIVQGNYTPVVSVYSSELISLVHSLLQQDP  241 (256)
T ss_pred             CCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHcCCCCCCccccCHHHHHHHHHHcccCc
Confidence            78899999999988899999999999999999986   4333222 2222223333344445557889999999999999


Q ss_pred             CCCCCHHHHhhhhhh
Q 001366          571 LSRPTTREILQSEVT  585 (1092)
Q Consensus       571 ~~Rpsa~eiL~~~~~  585 (1092)
                      .+||++.++|+|+|+
T Consensus       242 ~~R~s~~~ll~~~~l  256 (256)
T cd08221         242 EKRPTADEVLDQPLL  256 (256)
T ss_pred             ccCCCHHHHhhCcCC
Confidence            999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.94  E-value=6.3e-27  Score=263.18  Aligned_cols=245  Identities=14%  Similarity=0.144  Sum_probs=169.5

Q ss_pred             ccccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...+.- ......++.|+..............++..++... +|||++.+......+...+         
T Consensus        22 ~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~---------   92 (293)
T cd05053          22 EGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLY---------   92 (293)
T ss_pred             ccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeE---------
Confidence            3578999998753211 0112334444443322222222334444555566 7999987655433222222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhc---------------CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNAR---------------GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL  362 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~---------------~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill  362 (1092)
                             .+|||+.+++|.+++...               ...++...++.++.||+.||+|||++||+||||||+||++
T Consensus        93 -------li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~  165 (293)
T cd05053          93 -------VVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLV  165 (293)
T ss_pred             -------EEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEE
Confidence                   379999999999999643               3457788899999999999999999999999999999999


Q ss_pred             ccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccC
Q 001366          363 LQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN  442 (1092)
Q Consensus       363 ~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1092)
                      +.++.+|++|||+++.+......                                                         
T Consensus       166 ~~~~~~kL~Dfg~~~~~~~~~~~---------------------------------------------------------  188 (293)
T cd05053         166 TEDHVMKIADFGLARDIHHIDYY---------------------------------------------------------  188 (293)
T ss_pred             cCCCeEEeCccccccccccccce---------------------------------------------------------
Confidence            99999999999988764411000                                                         


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHH
Q 001366          443 ESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLF  522 (1092)
Q Consensus       443 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll  522 (1092)
                                                                  .......++..|+|||.+.+..++.++|||||||++
T Consensus       189 --------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il  224 (293)
T cd05053         189 --------------------------------------------RKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLL  224 (293)
T ss_pred             --------------------------------------------eccCCCCCCccccCHHHhccCCcCcccceeehhhHH
Confidence                                                        000011234569999999888999999999999999


Q ss_pred             HHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          523 FELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       523 ~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |||++ +   |.... .......+.....++.....++.+.+|+.+||.++|.+|||+.+++++
T Consensus       225 ~el~~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~  287 (293)
T cd05053         225 WEIFTLGGSPYPGIP-VEELFKLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVED  287 (293)
T ss_pred             HHHhcCCCCCCCCCC-HHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence            99986 3   33322 222333333333344444567889999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.94  E-value=4.8e-27  Score=270.09  Aligned_cols=255  Identities=16%  Similarity=0.203  Sum_probs=174.2

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|+||+|...    ..+..++.|.....+..........+..++...+|||++.+.+.........    ..      
T Consensus        16 G~~g~vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~----~~------   81 (336)
T cd07849          16 GAYGMVCSATHK----PTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFES----FN------   81 (336)
T ss_pred             cCCeEEEEEEEc----CCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccc----cc------
Confidence            478999999752    2245566655432222223333445667788889999998665433211111    00      


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                       ..-.+|+|+.+ +|.++++..  .++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++...
T Consensus        82 -~~~lv~e~~~~-~l~~~~~~~--~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~  157 (336)
T cd07849          82 -DVYIVQELMET-DLYKLIKTQ--HLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIAD  157 (336)
T ss_pred             -eEEEEehhccc-CHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeecc
Confidence             01136788765 888888653  57788999999999999999999999999999999999999999999999887643


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ....                                                                            
T Consensus       158 ~~~~----------------------------------------------------------------------------  161 (336)
T cd07849         158 PEHD----------------------------------------------------------------------------  161 (336)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERALA  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~~  536 (1092)
                                              ........+||++|+|||.+.+ ..++.++|||||||++|||++|   |.......
T Consensus       162 ------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~  217 (336)
T cd07849         162 ------------------------HTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLH  217 (336)
T ss_pred             ------------------------ccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                                    0001114568999999998765 5689999999999999999986   43221111


Q ss_pred             --HHHHhcccc-------------------CCC--------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          537 --AAMSDLRDR-------------------ILP--------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       537 --~~~~~~~~~-------------------~~p--------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                        ..+..+...                   ..+        ...+..++.+.+|+.+||+.+|.+|||+.++++||||..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~  297 (336)
T cd07849         218 QLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQ  297 (336)
T ss_pred             HHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccc
Confidence              101000000                   000        012345678899999999999999999999999999987


Q ss_pred             hhccch
Q 001366          588 FQEVCA  593 (1092)
Q Consensus       588 ~~~~~~  593 (1092)
                      ....+.
T Consensus       298 ~~~~~~  303 (336)
T cd07849         298 YHDPSD  303 (336)
T ss_pred             cCCCCC
Confidence            765543

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=3e-25  Score=241.51  Aligned_cols=282  Identities=16%  Similarity=0.242  Sum_probs=236.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEEC
Q 001366          779 ANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDA  858 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~  858 (1092)
                      ...++++...|..+.++|||.|+.+.+||...       ........+|...|+.+.++++ ...+++++.|..|+||.+
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s-------~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~  290 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPS-------NQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSV  290 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecch-------hhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeecc
Confidence            34677788888778999999999999999865       2334456789999999999998 888999999999999999


Q ss_pred             CCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecC---CceEEEEEccCCCeEEEEEECC
Q 001366          859 CTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI---ANVCCVQFSAHSSHLLAFGSAD  935 (1092)
Q Consensus       859 ~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~---~~V~sl~fsp~~~~~latgs~D  935 (1092)
                      ....+......|..+|+.+..+| .+.+|+++|.|+++.+.|+++++++....+.   -.+++.+|+||| .+|.+|..|
T Consensus       291 ~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d  368 (506)
T KOG0289|consen  291 PLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPD  368 (506)
T ss_pred             ccccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCC
Confidence            88888888889999999999999 8999999999999999999999998887764   348999999999 599999999


Q ss_pred             CeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC-CCCCeEEEE
Q 001366          936 YRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG-HTNEKNFVG 1013 (1092)
Q Consensus       936 g~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~-h~~~V~~v~ 1013 (1092)
                      +.|++||+.++. .+..+.+|.++|..|+|+ +|.+|++++.|+.|++||+|+..        ...++.- ...++++++
T Consensus       369 ~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--------n~kt~~l~~~~~v~s~~  439 (506)
T KOG0289|consen  369 GVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--------NFKTIQLDEKKEVNSLS  439 (506)
T ss_pred             ceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--------ccceeeccccccceeEE
Confidence            999999999876 567899999999999999 77789999999999999999643        2233332 223799999


Q ss_pred             EecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1014 LSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1014 ~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |.+.|.|++.++.|=.|+++...+..--            .......|.+..+.+.|....++|+++|.|..++|+.+
T Consensus       440 fD~SGt~L~~~g~~l~Vy~~~k~~k~W~------------~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  440 FDQSGTYLGIAGSDLQVYICKKKTKSWT------------EIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EcCCCCeEEeecceeEEEEEecccccce------------eeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            9999999999988877777764332210            01123566777899999999999999999999998754

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.94  E-value=7.9e-27  Score=262.06  Aligned_cols=249  Identities=16%  Similarity=0.122  Sum_probs=169.8

Q ss_pred             cccceeeeCCCCCcccc-ccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKE-RRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||+|...+.... .+..++.|+............-..+...+....||+++.+......+...+           
T Consensus        17 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~-----------   85 (288)
T cd05061          17 GSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTL-----------   85 (288)
T ss_pred             CCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcE-----------
Confidence            47899999865432221 122344444322111112122234455677788999987665533222222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcC---------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARG---------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~---------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                           .+|||+.||+|.+++...+         ..++...++.++.||+.||.|||++||+||||||+||+++.++.+|+
T Consensus        86 -----lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L  160 (288)
T cd05061          86 -----VVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKI  160 (288)
T ss_pred             -----EEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEE
Confidence                 3799999999999996532         23455678899999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++........                                                                 
T Consensus       161 ~Dfg~~~~~~~~~~~-----------------------------------------------------------------  175 (288)
T cd05061         161 GDFGMTRDIYETDYY-----------------------------------------------------------------  175 (288)
T ss_pred             CcCCccccccccccc-----------------------------------------------------------------
Confidence            999988764310000                                                                 


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......++..|+|||.+.+..++.++|||||||++|||++ + 
T Consensus       176 ------------------------------------~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~  219 (288)
T cd05061         176 ------------------------------------RKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAE  219 (288)
T ss_pred             ------------------------------------cccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCC
Confidence                                                00002234566999999998889999999999999999997 2 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh------hhhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ------SEVTNE  587 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~------~~~~~~  587 (1092)
                        |..... ......+.....++.....++.+.+++.+||+++|++||++.++++      ||+|.+
T Consensus       220 ~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~  285 (288)
T cd05061         220 QPYQGLSN-EQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPE  285 (288)
T ss_pred             CCCCCCCH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCC
Confidence              332221 1222222222233333345688999999999999999999999987      666654

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.94  E-value=8.5e-27  Score=258.00  Aligned_cols=245  Identities=16%  Similarity=0.123  Sum_probs=174.7

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.+++.++  +.|+||+|...+    .+..++.|+....  ........++..++...+||+++.++.....+...+  
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~----~~~~~~~K~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~--   78 (263)
T cd05052           7 DITMKHKLGGGQYGEVYEGVWKK----YSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY--   78 (263)
T ss_pred             HeEEeeecCCcccceEEEEEEec----CCceEEEEEecCC--chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcE--
Confidence            344444444  569999988632    2445555554322  222233445666788889999998766543332222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                    .+|||+.|++|.+++.... ..++...++.++.|++.+|.|||++||+||||||+||++++++.+|
T Consensus        79 --------------lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~k  144 (263)
T cd05052          79 --------------IITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVK  144 (263)
T ss_pred             --------------EEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEE
Confidence                          3799999999999997643 4578878999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++.......                                                                 
T Consensus       145 l~df~~~~~~~~~~~-----------------------------------------------------------------  159 (263)
T cd05052         145 VADFGLSRLMTGDTY-----------------------------------------------------------------  159 (263)
T ss_pred             eCCCcccccccccee-----------------------------------------------------------------
Confidence            999998866431000                                                                 


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~  528 (1092)
                                                           .......++..|+|||.+.+..++.++|||||||++|||++ +
T Consensus       160 -------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g  202 (263)
T cd05052         160 -------------------------------------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG  202 (263)
T ss_pred             -------------------------------------eccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCC
Confidence                                                 00001223456999999998899999999999999999997 4


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                         |++.. .......+.....++.....++.+.+++.+||..+|++||++.++++.
T Consensus       203 ~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~  258 (263)
T cd05052         203 MSPYPGID-LSQVYELLEKGYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQA  258 (263)
T ss_pred             CCCCCCCC-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHH
Confidence               43322 222223333322233334557889999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.94  E-value=6.8e-27  Score=267.89  Aligned_cols=257  Identities=13%  Similarity=0.045  Sum_probs=174.4

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCchhh-HhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDA-ALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      +..++.|+||++..    ...+..++.|++......... ....++..++...+|||++.+++....+...+        
T Consensus         8 ~g~~~~~~v~~a~~----~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~--------   75 (328)
T cd08226           8 RGFCNLTSVYLARH----TPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLW--------   75 (328)
T ss_pred             CcccCceeEEEEEE----cCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceE--------
Confidence            34457789999976    334667777766433222222 22333445556678999998776655433333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                              .+|+|+.+++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+||+++.++.+|++||+.
T Consensus        76 --------~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~  147 (328)
T cd08226          76 --------VISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSH  147 (328)
T ss_pred             --------EEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHH
Confidence                    3799999999999997643 3577878899999999999999999999999999999999999999999975


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ..........          .+                                                          
T Consensus       148 ~~~~~~~~~~----------~~----------------------------------------------------------  159 (328)
T cd08226         148 LYSLVRNGQK----------AK----------------------------------------------------------  159 (328)
T ss_pred             HhhhhccCcc----------cc----------------------------------------------------------
Confidence            4332100000          00                                                          


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC--CCCccccchhhhHHHHHHcCCCCcH-
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG--VCTTSSNIYSLGVLFFELFGRFDSE-  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~--~~t~~sDIwSLGvll~ell~~f~~~-  532 (1092)
                          ..                    .  ...  ....++..|+|||++.+.  .++.++|||||||++|||++++.+. 
T Consensus       160 ----~~--------------------~--~~~--~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~  211 (328)
T cd08226         160 ----VV--------------------Y--DFP--QFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQ  211 (328)
T ss_pred             ----cc--------------------c--ccc--ccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                00                    0  000  011245569999999773  4789999999999999999863332 


Q ss_pred             --HHHHHHHHhccccCC---------------------------------------------CCCCCCCChhHHHHHHhc
Q 001366          533 --RALAAAMSDLRDRIL---------------------------------------------PPSFLSENPKEAGFCLWQ  565 (1092)
Q Consensus       533 --~~~~~~~~~~~~~~~---------------------------------------------p~~~~~~~~~~~~li~~l  565 (1092)
                        .........+.....                                             .+.....++.+.+|+.+|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  291 (328)
T cd08226         212 DMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELC  291 (328)
T ss_pred             CcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHH
Confidence              222222222111100                                             011122356788999999


Q ss_pred             cccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          566 LHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       566 L~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      |..||.+|||+.|+|+||||.....
T Consensus       292 l~~dP~~Rpta~e~l~~~~~~~~~~  316 (328)
T cd08226         292 LQQDPEKRPSASSLLSHAFFKQVKE  316 (328)
T ss_pred             ccCCcccCCCHHHHhhCHHHHHHHH
Confidence            9999999999999999999987644

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.94  E-value=7e-27  Score=257.85  Aligned_cols=245  Identities=21%  Similarity=0.182  Sum_probs=180.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||++...+    .+..++.|+..............++...+...+|||++.+..........+           
T Consensus        11 ~g~~~~v~~~~~~~----~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~-----------   75 (264)
T cd06623          11 QGSSGVVYKVRHKP----TGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEIS-----------   75 (264)
T ss_pred             ecCCeEEEEEEEcC----CCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEE-----------
Confidence            35788999987743    244455554433222222333445555667778999998766644332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .+|+|++|++|.+++... ..++...++.++.||++||+|||+ +|++||||+|+||+++.++.++++|||+++.
T Consensus        76 -----lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~  149 (264)
T cd06623          76 -----IVLEYMDGGSLADLLKKV-GKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKV  149 (264)
T ss_pred             -----EEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCcccee
Confidence                 379999999999999765 457888999999999999999999 9999999999999999999999999998765


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       150 ~~~~~---------------------------------------------------------------------------  154 (264)
T cd06623         150 LENTL---------------------------------------------------------------------------  154 (264)
T ss_pred             cccCC---------------------------------------------------------------------------
Confidence            43100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCC---cHH--
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFD---SER--  533 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~---~~~--  533 (1092)
                                                  .......++..|+|||.+.+..++.++|+|||||++|+|+++..   ...  
T Consensus       155 ----------------------------~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~  206 (264)
T cd06623         155 ----------------------------DQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQP  206 (264)
T ss_pred             ----------------------------CcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccccc
Confidence                                        00013456788999999999989999999999999999999632   221  


Q ss_pred             HHHHHHHhccccCCCCCCCC-CChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLS-ENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~-~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ........+.....++.... .+..+.+++.+||+++|+.||++.++++||||...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~~~~~~~  262 (264)
T cd06623         207 SFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQHPFIKKA  262 (264)
T ss_pred             CHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHhCHHHHhc
Confidence            22333344444444443334 57889999999999999999999999999999653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.94  E-value=8.5e-27  Score=260.71  Aligned_cols=249  Identities=17%  Similarity=0.073  Sum_probs=170.1

Q ss_pred             HHHhhhc--cccceeeeCCCCCcccc-ccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKE-RRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +.++..+  +|.|.||++...+.... .+..++.+..... .........++...+....|||++.+..........+  
T Consensus         7 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~--   83 (280)
T cd05092           7 IVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLL--   83 (280)
T ss_pred             ceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcC-CHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceE--
Confidence            3334444  47899999864332111 1223333332211 1122233344556778889999998665544322222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcC--------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCC
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARG--------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLK  356 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~--------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLK  356 (1092)
                                    .+|||+.|++|.++|...+              ..++...++.++.||+.||+|||++||+|||||
T Consensus        84 --------------lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlk  149 (280)
T cd05092          84 --------------MVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLA  149 (280)
T ss_pred             --------------EEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeeccccc
Confidence                          3799999999999997643              236777899999999999999999999999999


Q ss_pred             CCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCC
Q 001366          357 PSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGN  436 (1092)
Q Consensus       357 P~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (1092)
                      |+||+++.++.+|++|||+++........                                                   
T Consensus       150 p~nil~~~~~~~kL~dfg~~~~~~~~~~~---------------------------------------------------  178 (280)
T cd05092         150 TRNCLVGQGLVVKIGDFGMSRDIYSTDYY---------------------------------------------------  178 (280)
T ss_pred             HhhEEEcCCCCEEECCCCceeEcCCCcee---------------------------------------------------
Confidence            99999999999999999988654310000                                                   


Q ss_pred             cccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccch
Q 001366          437 KIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIY  516 (1092)
Q Consensus       437 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIw  516 (1092)
                                                                        .......++..|+|||.+.+..++.++|||
T Consensus       179 --------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  208 (280)
T cd05092         179 --------------------------------------------------RVGGRTMLPIRWMPPESILYRKFTTESDIW  208 (280)
T ss_pred             --------------------------------------------------ecCCCccccccccCHHHhccCCcCchhhHH
Confidence                                                              000022345679999999998999999999


Q ss_pred             hhhHHHHHHcC-CCCc---HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          517 SLGVLFFELFG-RFDS---ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       517 SLGvll~ell~-~f~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ||||++|||++ +..+   .......... .....++.....++.+.+|+.+||+.||.+||++.+|++
T Consensus       209 slG~il~el~~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~  276 (280)
T cd05092         209 SFGVVLWEIFTYGKQPWYQLSNTEAIECI-TQGRELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHS  276 (280)
T ss_pred             HHHHHHHHHHcCCCCCCccCCHHHHHHHH-HcCccCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            99999999997 4332   2222222222 222222233355788999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.94  E-value=6e-27  Score=262.01  Aligned_cols=241  Identities=17%  Similarity=0.192  Sum_probs=169.3

Q ss_pred             cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||++...    ..+..++.|...... ..........+...+...+|||++.+.+....+...+           
T Consensus        11 g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   75 (284)
T cd07860          11 GTYGVVYKARNK----LTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLY-----------   75 (284)
T ss_pred             CCceEEEEEEEC----CCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEE-----------
Confidence            578999998752    123444444332111 1112233445667788889999998776644322222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .+|||+. ++|.+++... +..++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        76 -----~v~e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~  149 (284)
T cd07860          76 -----LVFEFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARA  149 (284)
T ss_pred             -----EEeeccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhh
Confidence                 3799996 5899998653 34678889999999999999999999999999999999999999999999998765


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +....                                                                           
T Consensus       150 ~~~~~---------------------------------------------------------------------------  154 (284)
T cd07860         150 FGVPV---------------------------------------------------------------------------  154 (284)
T ss_pred             cccCc---------------------------------------------------------------------------
Confidence            33100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC-CCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV-CTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~-~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                  .......++.+|+|||.+.+.. ++.++|||||||++|||+++   |.....
T Consensus       155 ----------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~  206 (284)
T cd07860         155 ----------------------------RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE  206 (284)
T ss_pred             ----------------------------cccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH
Confidence                                        0001234678899999987744 68899999999999999986   433322


Q ss_pred             HHHHHHhccccC-------------------CC--------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAAMSDLRDRI-------------------LP--------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~~~~~~~~~-------------------~p--------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ............                   .+        ......++.+.+|+.+||+.||++||+++++|.||||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         207 IDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             HHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhcCCCC
Confidence            222211111000                   00        0122356788899999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=7.2e-27  Score=260.39  Aligned_cols=244  Identities=18%  Similarity=0.202  Sum_probs=171.0

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC---CCCCCCccccceecCCCCCCCccCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN---ASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ..++.|.||+|....    .+..++.|++.............++..++...   .|||++........+...+       
T Consensus        10 ~~g~~g~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~-------   78 (277)
T cd06917          10 GRGAYGAVYRGKHVP----TGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLW-------   78 (277)
T ss_pred             eccCCceEEEEEEcC----CCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEE-------
Confidence            345789999998521    24555555542221111222222333344444   4898887554432221111       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               ++|||+.|++|.++++..  .++...++.++.||+.||.|||++||+|+||+|+||+++.++.++++|||+
T Consensus        79 ---------lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~  147 (277)
T cd06917          79 ---------IIMEYAEGGSVRTLMKAG--PIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGV  147 (277)
T ss_pred             ---------EEEecCCCCcHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCc
Confidence                     389999999999999664  678889999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      +.......                                                                        
T Consensus       148 ~~~~~~~~------------------------------------------------------------------------  155 (277)
T cd06917         148 AALLNQNS------------------------------------------------------------------------  155 (277)
T ss_pred             eeecCCCc------------------------------------------------------------------------
Confidence            86643100                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCc
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                     .......|+..|+|||.+.+ ..++.++|+|||||++|+|+++   |..
T Consensus       156 -------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~  204 (277)
T cd06917         156 -------------------------------SKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSD  204 (277)
T ss_pred             -------------------------------cccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCC
Confidence                                           00013457888999999876 4578999999999999999986   333


Q ss_pred             HHHHHHHHHhccccCCCCCCC--CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          532 ERALAAAMSDLRDRILPPSFL--SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ....... ..+... .++.+.  ..++.+.+|+.+||..+|.+||++.+++.|+||.+..
T Consensus       205 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~~~~~~~~~  262 (277)
T cd06917         205 VDAFRAM-MLIPKS-KPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELLKSKWIKAHS  262 (277)
T ss_pred             CChhhhh-hccccC-CCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhhChHhhccc
Confidence            2222221 112222 222222  2567889999999999999999999999999997653

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.94  E-value=2.9e-27  Score=257.99  Aligned_cols=230  Identities=16%  Similarity=0.099  Sum_probs=162.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|..|.||++...    ..+..++.|........ .     .+...+....|||++.+......+...+           
T Consensus         3 ~g~~~~v~~~~~~----~~~~~~~~K~i~~~~~~-~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------   61 (237)
T cd05576           3 LGVIDKVLLVMDT----RTQQTFILKGLRKSSEY-S-----RERLTIIPHCVPNMVCLHKYIVSEDSVF-----------   61 (237)
T ss_pred             ccccceEEEEEEc----cCCcEEEEEeecchhhh-h-----hHHHHHHhcCCCceeehhhheecCCeEE-----------
Confidence            4556788887762    23455555554322211 1     1112233456899887665544322222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|||+.|++|.+++.... .++...+..++.||+.||+|||++||+||||||+||+++.++.++++|||.+...
T Consensus        62 -----lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~  135 (237)
T cd05576          62 -----LVLQHAEGGKLWSHISKFL-NIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEV  135 (237)
T ss_pred             -----EEEecCCCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhcc
Confidence                 3899999999999997654 4778899999999999999999999999999999999999999999999976543


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ...                                                                             
T Consensus       136 ~~~-----------------------------------------------------------------------------  138 (237)
T cd05576         136 EDS-----------------------------------------------------------------------------  138 (237)
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            200                                                                             


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHHHHHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAM  539 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~~~~~~~  539 (1092)
                                                   .....++..|+|||.+.+..++.++|+|||||++|||+++...........
T Consensus       139 -----------------------------~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~  189 (237)
T cd05576         139 -----------------------------CDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGI  189 (237)
T ss_pred             -----------------------------cccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc
Confidence                                         002234567999999988889999999999999999999743221110001


Q ss_pred             HhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH-----HHHhhhhhh
Q 001366          540 SDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT-----REILQSEVT  585 (1092)
Q Consensus       540 ~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa-----~eiL~~~~~  585 (1092)
                      .......+|   ...++.+++|+.+||++||++||++     .+++.||||
T Consensus       190 ~~~~~~~~~---~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         190 NTHTTLNIP---EWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             ccccccCCc---ccCCHHHHHHHHHHccCCHHHhcCCCccchHHHHcCCCC
Confidence            000111122   2346889999999999999999996     999999997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.94  E-value=7.7e-27  Score=260.55  Aligned_cols=244  Identities=13%  Similarity=0.088  Sum_probs=166.4

Q ss_pred             cccceeeeCCCCCcccc-ccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKE-RRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|.||+|...+.-.. ++..++.|.+.............++...+...+|+|++.++.........+           
T Consensus        17 g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~-----------   85 (277)
T cd05036          17 GAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRF-----------   85 (277)
T ss_pred             CCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcE-----------
Confidence            47899999876431100 123333343322211222223344556778889999998766543222222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCC------CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC---cEEE
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGH------KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN---QVKY  370 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~------~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~---~vkl  370 (1092)
                           .+|||+.|++|.++|...+.      .++...++.++.||+.||+|||++||+||||||+||+++..+   .+|+
T Consensus        86 -----lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl  160 (277)
T cd05036          86 -----ILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKI  160 (277)
T ss_pred             -----EEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEe
Confidence                 38999999999999966532      467778999999999999999999999999999999998765   5999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.+......                                                                 
T Consensus       161 ~dfg~~~~~~~~~~~-----------------------------------------------------------------  175 (277)
T cd05036         161 ADFGMARDIYRASYY-----------------------------------------------------------------  175 (277)
T ss_pred             ccCccccccCCccce-----------------------------------------------------------------
Confidence            999988764310000                                                                 


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          ........+..|+|||++.+..++.++|||||||++|||++ + 
T Consensus       176 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~  219 (277)
T cd05036         176 ------------------------------------RKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGY  219 (277)
T ss_pred             ------------------------------------ecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCC
Confidence                                                00001122346999999998899999999999999999996 4 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                        |........ +..+.....++.....++.+.+|+.+||.++|++||++.++++|
T Consensus       220 ~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~  274 (277)
T cd05036         220 MPYPGRTNQEV-MEFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILER  274 (277)
T ss_pred             CCCCCCCHHHH-HHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence              443222221 11111111122223456788999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.94  E-value=7.5e-27  Score=258.61  Aligned_cols=246  Identities=16%  Similarity=0.081  Sum_probs=170.9

Q ss_pred             cccceeeeCCCCCccccccccccccccccccC---ch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM---PS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      ++.|.||+|...+    .+..++.|.......   .. .......+...+....||+++..........       ....
T Consensus        13 g~~g~v~~~~~~~----~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-------~~~~   81 (265)
T cd06652          13 GAFGRVYLCYDAD----TGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPM-------ERTL   81 (265)
T ss_pred             CCceEEEEEEEcC----CCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCC-------CceE
Confidence            4679999997632    234445543321111   11 1223344566778889999987554322110       0011


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                      +       .+|+|+.|++|.+++...+ .++...++.++.||+.+|+|||++||+|+||||+||+++.++.++++|||++
T Consensus        82 ~-------~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~  153 (265)
T cd06652          82 S-------IFMEHMPGGSIKDQLKSYG-ALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGAS  153 (265)
T ss_pred             E-------EEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccc
Confidence            1       3799999999999997664 4677789999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +........                                                                       
T Consensus       154 ~~~~~~~~~-----------------------------------------------------------------------  162 (265)
T cd06652         154 KRLQTICLS-----------------------------------------------------------------------  162 (265)
T ss_pred             ccccccccc-----------------------------------------------------------------------
Confidence            754310000                                                                       


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCc---HH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDS---ER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~---~~  533 (1092)
                                                   ........|+..|+|||.+.+..++.++|||||||++|||+++..+   ..
T Consensus       163 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~  213 (265)
T cd06652         163 -----------------------------GTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFE  213 (265)
T ss_pred             -----------------------------ccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccc
Confidence                                         0001134578889999999988899999999999999999986332   22


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      ..............+......+..+.+++.+||. +|..||+++||++|||++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~~~~~  265 (265)
T cd06652         214 AMAAIFKIATQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLRHTFVH  265 (265)
T ss_pred             hHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcCcccC
Confidence            2333222222222222223446778899999995 999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.94  E-value=9.7e-27  Score=260.58  Aligned_cols=252  Identities=14%  Similarity=0.097  Sum_probs=171.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+...++  +.|+||++....    .+..++.|++......  .....++..++... .|||++.++.......... 
T Consensus        19 ~~~~~~~lg~g~~~~vy~~~~~~----~~~~~~ik~~~~~~~~--~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~-   91 (286)
T cd06638          19 TWEIIETIGKGTYGKVFKVLNKK----NGSKAAVKILDPIHDI--DEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKN-   91 (286)
T ss_pred             ceeeeeeeccCCCcEEEEEEECC----CCceeEEEeeccccch--HHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCC-
Confidence            344444443  679999987632    2445555554332211  12222344455555 6999998665432111000 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                         ...       ..++|||++|++|.+++..   .+..++...+..++.||+.||.|||+++|+||||||+||+++.++
T Consensus        92 ---~~~-------~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~  161 (286)
T cd06638          92 ---GDQ-------LWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEG  161 (286)
T ss_pred             ---CCe-------EEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCC
Confidence               001       1248999999999999853   234577778999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+|++|||+++.+....                                                               
T Consensus       162 ~~kl~dfg~~~~~~~~~---------------------------------------------------------------  178 (286)
T cd06638         162 GVKLVDFGVSAQLTSTR---------------------------------------------------------------  178 (286)
T ss_pred             CEEEccCCceeecccCC---------------------------------------------------------------
Confidence            99999999876543100                                                               


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----CCCCccccchhhhHH
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----GVCTTSSNIYSLGVL  521 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----~~~t~~sDIwSLGvl  521 (1092)
                                                              .......|+..|+|||.+..     ..++.++|||||||+
T Consensus       179 ----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi  218 (286)
T cd06638         179 ----------------------------------------LRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGIT  218 (286)
T ss_pred             ----------------------------------------CccccccCCCcccChhhhchhhhccccccchhhhhhHHHH
Confidence                                                    00013357888999999853     457899999999999


Q ss_pred             HHHHcCC---CCcHHHHHHHHHhccccCCCCC-C-CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          522 FFELFGR---FDSERALAAAMSDLRDRILPPS-F-LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       522 l~ell~~---f~~~~~~~~~~~~~~~~~~p~~-~-~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      +|||+++   |............... ..+.. . ...+..+.+|+.+||+.+|.+||++.|||+|+||
T Consensus       219 ~~el~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~~~  286 (286)
T cd06638         219 AIELGDGDPPLADLHPMRALFKIPRN-PPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI  286 (286)
T ss_pred             HHHHhcCCCCCCCCchhHHHhhcccc-CCCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhcccC
Confidence            9999986   3332222222222221 11111 1 1235678999999999999999999999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.94  E-value=4.6e-27  Score=259.00  Aligned_cols=252  Identities=17%  Similarity=0.174  Sum_probs=179.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++...+    .+..++.|+.......  ........+..++...+|||++.+......+...+         
T Consensus         3 ~g~~~~vy~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~---------   69 (265)
T cd05579           3 KGAYGRVFLAKKKS----TGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLY---------   69 (265)
T ss_pred             CCCceEEEEEEECC----CCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEE---------
Confidence            35789999998742    2344555554322221  22333444556677788999998665543322222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+|+|+.|++|.+++...+ .++..+++.++.||+.||.|||++||+|+||+|+||++++++.++++|||++.
T Consensus        70 -------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~  141 (265)
T cd05579          70 -------LVMEYLPGGDLASLLENVG-SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSK  141 (265)
T ss_pred             -------EEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccch
Confidence                   3899999999999998765 57888999999999999999999999999999999999999999999999876


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ........   .                                                           .        
T Consensus       142 ~~~~~~~~---~-----------------------------------------------------------~--------  151 (265)
T cd05579         142 VGLVRRQI---N-----------------------------------------------------------L--------  151 (265)
T ss_pred             hcccCccc---c-----------------------------------------------------------c--------
Confidence            53310000   0                                                           0        


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                               ...........++..|+|||.+.+..++.++|+|||||++|||+++   |.....
T Consensus       152 -------------------------~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~  206 (265)
T cd05579         152 -------------------------NDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP  206 (265)
T ss_pred             -------------------------ccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH
Confidence                                     0000011134577889999999888899999999999999999986   333322


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH---HHHhhhhhhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT---REILQSEVTNE  587 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa---~eiL~~~~~~~  587 (1092)
                      .............++.....++.+.+|+.+||+.+|.+|||+   .++|+||||.+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~~~~~~  262 (265)
T cd05579         207 EEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKNHPFFKG  262 (265)
T ss_pred             HHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhcCccccC
Confidence            222222222222233333357889999999999999999999   99999999975

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.94  E-value=1.2e-26  Score=262.79  Aligned_cols=244  Identities=17%  Similarity=0.144  Sum_probs=169.6

Q ss_pred             ccccceeeeCCCC----CccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCC
Q 001366          220 LKGKGIVCRGPPL----NAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTG  294 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1092)
                      .+|.|.||++...    +.. .....++.|+..............++..++... .|||++.++.....+...+      
T Consensus        25 ~G~~g~Vy~~~~~~~~~~~~-~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~------   97 (304)
T cd05101          25 EGCFGQVVMAEALGIDKDKP-KEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLY------   97 (304)
T ss_pred             ccCCceEEEEEEeccCCCCC-CcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceE------
Confidence            3578999988531    111 112345555543322222223344555566666 7999998766544333222      


Q ss_pred             CCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCC
Q 001366          295 VPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSS  359 (1092)
Q Consensus       295 ~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~N  359 (1092)
                                .+|||+.+++|.++|....               ..++..+++.++.||+.||.|||++||+||||||+|
T Consensus        98 ----------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~N  167 (304)
T cd05101          98 ----------VIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARN  167 (304)
T ss_pred             ----------EEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccce
Confidence                      3899999999999997642               235666789999999999999999999999999999


Q ss_pred             eEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccc
Q 001366          360 FKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIE  439 (1092)
Q Consensus       360 ill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1092)
                      |+++.++.+|++|||+++........                                                      
T Consensus       168 ili~~~~~~kl~D~g~~~~~~~~~~~------------------------------------------------------  193 (304)
T cd05101         168 VLVTENNVMKIADFGLARDVNNIDYY------------------------------------------------------  193 (304)
T ss_pred             EEEcCCCcEEECCCccceeccccccc------------------------------------------------------
Confidence            99999999999999998764410000                                                      


Q ss_pred             ccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhh
Q 001366          440 TANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLG  519 (1092)
Q Consensus       440 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLG  519 (1092)
                                                                     .......++..|+|||++.+..++.++||||||
T Consensus       194 -----------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  226 (304)
T cd05101         194 -----------------------------------------------KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG  226 (304)
T ss_pred             -----------------------------------------------ccccCCCCCceeeCchhhccCCCCchhhHHHHH
Confidence                                                           000022345679999999988899999999999


Q ss_pred             HHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          520 VLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       520 vll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |+||||++ +   |... ........+.....+......+..+.+|+.+||+++|.+||++.++++.
T Consensus       227 ~~l~el~~~g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  292 (304)
T cd05101         227 VLMWEIFTLGGSPYPGI-PVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVED  292 (304)
T ss_pred             HHHHHHHcCCCCCcccC-CHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHH
Confidence            99999997 3   3221 2222333333332223334557888999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.94  E-value=8.8e-27  Score=256.15  Aligned_cols=241  Identities=19%  Similarity=0.173  Sum_probs=175.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC----chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM----PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      .+|.|+||+|....    .+..++.|+......    .........+..+++..+||+++.+......+...+       
T Consensus        10 ~g~~~~vy~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~-------   78 (258)
T cd06632          10 SGSFGSVYEGLNLD----DGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLY-------   78 (258)
T ss_pred             ecCCceEEEEEEcC----CCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEE-------
Confidence            45789999998741    234455544322111    112233445566778889999997665433222112       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               +++||++|++|.+++...+ .++...++.++.||+.||.|||++||+|+||||+||+++.++.+|++|||+
T Consensus        79 ---------lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~  148 (258)
T cd06632          79 ---------IFLELVPGGSLAKLLKKYG-SFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGM  148 (258)
T ss_pred             ---------EEEEecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCcc
Confidence                     3799999999999997664 467778999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      +.......                                                                        
T Consensus       149 ~~~~~~~~------------------------------------------------------------------------  156 (258)
T cd06632         149 AKQVVEFS------------------------------------------------------------------------  156 (258)
T ss_pred             ceeccccc------------------------------------------------------------------------
Confidence            76533100                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC-CCccccchhhhHHHHHHcCC---CCc
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV-CTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~-~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                      ......|+..|+|||.+.... ++.++|+|||||++|+|+++   |..
T Consensus       157 --------------------------------~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~  204 (258)
T cd06632         157 --------------------------------FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQ  204 (258)
T ss_pred             --------------------------------cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCccc
Confidence                                            001345788899999988766 89999999999999999986   333


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          532 ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ................+......++.+.+|+.+||..+|.+||++.++|.|||+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  258 (258)
T cd06632         205 LEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLEHPFV  258 (258)
T ss_pred             CcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhcCCCC
Confidence            333333333222233333334457889999999999999999999999999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.94  E-value=8.5e-27  Score=264.99  Aligned_cols=260  Identities=16%  Similarity=0.188  Sum_probs=174.9

Q ss_pred             HHHhhhccccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCcc
Q 001366          214 FFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGAR  292 (1092)
Q Consensus       214 ~~~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (1092)
                      +.+-..++|.|.||++....    .+..++.|+..... ..........+...+...+|||++..+.....+...+    
T Consensus         4 ~~i~~~~~~~~~v~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~----   75 (314)
T cd08216           4 TLIGKCFEDLMIVHLAKHKP----TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELY----   75 (314)
T ss_pred             hhhhHhhcCCceEEEEEecC----CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEE----
Confidence            44555655555554444321    24555565543321 2223344455566777889999998766544332222    


Q ss_pred             CCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          293 TGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                  .+|||+.+++|.+++... ...+++..+..+++||+.||+|||++||+||||||+||+++.++.+|++
T Consensus        76 ------------~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~  143 (314)
T cd08216          76 ------------VVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLS  143 (314)
T ss_pred             ------------EEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEe
Confidence                        379999999999999753 3457777899999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||.+..+.......                                                                 
T Consensus       144 d~~~~~~~~~~~~~~-----------------------------------------------------------------  158 (314)
T cd08216         144 GLRYSVSMIKHGKRQ-----------------------------------------------------------------  158 (314)
T ss_pred             cCccceeeccccccc-----------------------------------------------------------------
Confidence            999887644110000                                                                 


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC--CCCCccccchhhhHHHHHHcCC-
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG--GVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~--~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                     ...........++..|+|||.+..  ..++.++|||||||++|||+++ 
T Consensus       159 -------------------------------~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~  207 (314)
T cd08216         159 -------------------------------RVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGH  207 (314)
T ss_pred             -------------------------------cccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCC
Confidence                                           000000113456788999999876  4588999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhcccc--------CCC------------------------CCCCCCChhHHHHHHhccccCCCCCC
Q 001366          529 --FDSERALAAAMSDLRDR--------ILP------------------------PSFLSENPKEAGFCLWQLHPEPLSRP  574 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~--------~~p------------------------~~~~~~~~~~~~li~~lL~~dP~~Rp  574 (1092)
                        |................        ..|                        +.....++.+.+|+.+||+++|++||
T Consensus       208 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp  287 (314)
T cd08216         208 VPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRP  287 (314)
T ss_pred             CCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCc
Confidence              43222222221111110        000                        00111235678999999999999999


Q ss_pred             CHHHHhhhhhhhhhh
Q 001366          575 TTREILQSEVTNEFQ  589 (1092)
Q Consensus       575 sa~eiL~~~~~~~~~  589 (1092)
                      |+.++|+||||....
T Consensus       288 t~~~ll~~p~~~~~~  302 (314)
T cd08216         288 SASQLLNHSFFKQCK  302 (314)
T ss_pred             CHHHHhcCchHhhhc
Confidence            999999999998664

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.7e-27  Score=244.28  Aligned_cols=259  Identities=12%  Similarity=0.094  Sum_probs=187.7

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchh-hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+-.|.|+++...+    .+..++.+++..++.+.+ -..+.++.+++...+|+|++.+++..........    +   
T Consensus        26 gqGtfgeVFkAr~~n----~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~----r---   94 (376)
T KOG0669|consen   26 GQGTFGEVFKARSKN----TGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTN----R---   94 (376)
T ss_pred             CCchHHHHHHHhhcC----ccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcc----c---
Confidence            333456788888744    455566655544444333 3557888888999999998877665444433331    1   


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                       |-.-...++.+|+. +|.-+|.....+++..++..++++++.||.|+|++.|+|||+||+|+||+.+|.+|++|||+++
T Consensus        95 -~r~t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar  172 (376)
T KOG0669|consen   95 -DRATFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLAR  172 (376)
T ss_pred             -ccceeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeecccccc
Confidence             00002236677764 8888887776788889999999999999999999999999999999999999999999999998


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+..+..                                                                         
T Consensus       173 ~fs~~~n-------------------------------------------------------------------------  179 (376)
T KOG0669|consen  173 AFSTSKN-------------------------------------------------------------------------  179 (376)
T ss_pred             ceecccc-------------------------------------------------------------------------
Confidence            7552110                                                                         


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                .....++..+-|.||++||.+.| ..|+++.|||.-|||+.||+++   |.+..
T Consensus       180 --------------------------~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnt  233 (376)
T KOG0669|consen  180 --------------------------VVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNT  233 (376)
T ss_pred             --------------------------cCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCCh
Confidence                                      00122446788999999999998 6799999999999999999986   44433


Q ss_pred             H--HHHHHHhccccCCCCCC-------------------------------CCCChhHHHHHHhccccCCCCCCCHHHHh
Q 001366          534 A--LAAAMSDLRDRILPPSF-------------------------------LSENPKEAGFCLWQLHPEPLSRPTTREIL  580 (1092)
Q Consensus       534 ~--~~~~~~~~~~~~~p~~~-------------------------------~~~~~~~~~li~~lL~~dP~~Rpsa~eiL  580 (1092)
                      +  ...+++.+...+-+..+                               -...+..++|+..||.+||.+|+.+.++|
T Consensus       234 eqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~al  313 (376)
T KOG0669|consen  234 EQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQAL  313 (376)
T ss_pred             HHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhh
Confidence            3  23334444433211110                               01234678999999999999999999999


Q ss_pred             hhhhhhhhh
Q 001366          581 QSEVTNEFQ  589 (1092)
Q Consensus       581 ~~~~~~~~~  589 (1092)
                      .|+||...+
T Consensus       314 nh~~F~kdp  322 (376)
T KOG0669|consen  314 NHDFFWKDP  322 (376)
T ss_pred             chhhhhcCC
Confidence            999997653

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.94  E-value=1.1e-26  Score=263.10  Aligned_cols=246  Identities=14%  Similarity=0.112  Sum_probs=170.5

Q ss_pred             ccccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...... ......++.|++..............+..++... .|||++.++.....+...+         
T Consensus        45 ~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~---------  115 (302)
T cd05055          45 AGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPIL---------  115 (302)
T ss_pred             ccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCceE---------
Confidence            3467999988641110 1112344445443322222223334455667777 7999998776544333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                             .+|||+.|++|.+++.... ..++..+++.++.||+.||+|||++||+|+||||+||+++.++.+|++|||++
T Consensus       116 -------lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~  188 (302)
T cd05055         116 -------VITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLA  188 (302)
T ss_pred             -------EEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCccc
Confidence                   3899999999999997543 34788899999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +........                                                                       
T Consensus       189 ~~~~~~~~~-----------------------------------------------------------------------  197 (302)
T cd05055         189 RDIMNDSNY-----------------------------------------------------------------------  197 (302)
T ss_pred             ccccCCCce-----------------------------------------------------------------------
Confidence            764310000                                                                       


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSE  532 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~  532 (1092)
                                                    .......++..|+|||.+.+..++.++|||||||++|||++ +   |...
T Consensus       198 ------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~  247 (302)
T cd05055         198 ------------------------------VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGM  247 (302)
T ss_pred             ------------------------------eecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCC
Confidence                                          00002235677999999999899999999999999999997 4   3222


Q ss_pred             HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          533 RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .........+.....++.....++.+.+|+.+||.++|++||++.++++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~  297 (302)
T cd05055         248 PVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQL  297 (302)
T ss_pred             CchHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHH
Confidence            22222222222222223333457889999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.3e-26  Score=258.25  Aligned_cols=244  Identities=16%  Similarity=0.110  Sum_probs=170.7

Q ss_pred             cccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|.||+|...+.. ......++.|+........+.....++..++....|||++.++.....+...+           
T Consensus        17 g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~-----------   85 (277)
T cd05032          17 GSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTL-----------   85 (277)
T ss_pred             CCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcE-----------
Confidence            578999998874322 11134455544422211122222334556677789999998766544332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcC---------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARG---------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~---------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                           ++|||+.+++|.++|....         ..++...++.++.||+.||.|||++||+||||||+||+++.++.+|+
T Consensus        86 -----~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl  160 (277)
T cd05032          86 -----VVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKI  160 (277)
T ss_pred             -----EEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEE
Confidence                 3899999999999996532         23566788999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.+......                                                                 
T Consensus       161 ~dfg~~~~~~~~~~~-----------------------------------------------------------------  175 (277)
T cd05032         161 GDFGMTRDIYETDYY-----------------------------------------------------------------  175 (277)
T ss_pred             CCcccchhhccCccc-----------------------------------------------------------------
Confidence            999988764311000                                                                 


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......++..|+|||.+.+..++.++|||||||++|||++ + 
T Consensus       176 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~  219 (277)
T cd05032         176 ------------------------------------RKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAE  219 (277)
T ss_pred             ------------------------------------ccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCC
Confidence                                                00012345667999999988889999999999999999997 4 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                        |.... .......+.....++.....++.+.+|+.+||+++|++|||+.+|+..
T Consensus       220 ~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~  274 (277)
T cd05032         220 QPYQGLS-NEEVLKFVIDGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSS  274 (277)
T ss_pred             CCCccCC-HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence              43222 222233333333333333447888999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.1e-26  Score=256.15  Aligned_cols=243  Identities=16%  Similarity=0.118  Sum_probs=171.6

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.++  +.|+||++...+     ....+.|+.......  .....++..++....|||++........+...+   
T Consensus         6 ~~~~~~lg~G~~~~v~~~~~~~-----~~~~~iK~~~~~~~~--~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~---   75 (256)
T cd05059           6 LTFLKELGSGQFGVVHLGKWRG-----KIDVAIKMIREGAMS--EDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIF---   75 (256)
T ss_pred             cchhhhhccCCCceEEEeEecC-----CccEEEEEeccCCCC--HHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceE---
Confidence            44444443  579999987632     334455554322221  122334566777889999887655433222222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+|||++|++|.+++......++...++.++.||+.||.|||++||+||||||+||+++.++.+|++
T Consensus        76 -------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~  142 (256)
T cd05059          76 -------------IVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVS  142 (256)
T ss_pred             -------------EEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEEC
Confidence                         3799999999999997765577888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++...+....                                                                  
T Consensus       143 dfg~~~~~~~~~~~------------------------------------------------------------------  156 (256)
T cd05059         143 DFGLARYVLDDQYT------------------------------------------------------------------  156 (256)
T ss_pred             Ccccceeccccccc------------------------------------------------------------------
Confidence            99988654310000                                                                  


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~--  528 (1092)
                                                          ......++..|+|||.+.+..++.++|||||||++|||++ +  
T Consensus       157 ------------------------------------~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~  200 (256)
T cd05059         157 ------------------------------------SSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKM  200 (256)
T ss_pred             ------------------------------------ccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCC
Confidence                                                0001112346999999999899999999999999999997 3  


Q ss_pred             -CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 -FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       |....... ....+.....++.....++.+.+++.+||+++|++|||+.++++.
T Consensus       201 p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~  254 (256)
T cd05059         201 PYERFSNSE-VVESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQ  254 (256)
T ss_pred             CCCCCCHHH-HHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence             33222222 222222222233334467889999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.94  E-value=9.2e-27  Score=263.70  Aligned_cols=244  Identities=16%  Similarity=0.050  Sum_probs=170.1

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      -..+|.|.||+|.....-......++.|+..............++..++....|||++..+.......            
T Consensus        15 lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~------------   82 (303)
T cd05110          15 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPT------------   82 (303)
T ss_pred             cccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCC------------
Confidence            34457899999875221111011234444432222222223345556778889999998665432111            


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                           ...+++|+.+|+|.+++......++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++
T Consensus        83 -----~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~  157 (303)
T cd05110          83 -----IQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (303)
T ss_pred             -----ceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccc
Confidence                 113799999999999998776667888899999999999999999999999999999999999999999999887


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .......                                                                         
T Consensus       158 ~~~~~~~-------------------------------------------------------------------------  164 (303)
T cd05110         158 LLEGDEK-------------------------------------------------------------------------  164 (303)
T ss_pred             cccCccc-------------------------------------------------------------------------
Confidence            6431000                                                                         


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcH-
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSE-  532 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~-  532 (1092)
                                                  ........++..|+|||.+.+..++.++|||||||++|||++ +   |... 
T Consensus       165 ----------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~  216 (303)
T cd05110         165 ----------------------------EYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP  216 (303)
T ss_pred             ----------------------------ccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence                                        000002234667999999998899999999999999999986 3   3322 


Q ss_pred             -HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          533 -RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       533 -~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       ......+   .....++.....+..+.+++..||..+|.+||+++++++.
T Consensus       217 ~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~  264 (303)
T cd05110         217 TREIPDLL---EKGERLPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAE  264 (303)
T ss_pred             HHHHHHHH---HCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence             2222222   2222233334457889999999999999999999999874

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.5e-26  Score=256.75  Aligned_cols=251  Identities=14%  Similarity=0.050  Sum_probs=173.8

Q ss_pred             hccccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|.|+||+|...+.... ...++.|+..... .........++...+....|||++.++..........   ....+.
T Consensus         8 g~G~~g~v~~~~~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~---~~~~~~   83 (273)
T cd05035           8 GEGEFGSVMEGQLSQDDGS-QLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQ---KIPKPM   83 (273)
T ss_pred             CcCCCceEEEEEEecCCCC-cceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccc---cCcccE
Confidence            3467899999976331111 2344554432221 2223344556667788889999997665533222211   112222


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhc-----CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEec
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNAR-----GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIG  372 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~-----~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~D  372 (1092)
                             .+|+|+.+++|.+++...     ...++...++.++.||+.||+|||++||+||||||+||+++..+.+|++|
T Consensus        84 -------~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~d  156 (273)
T cd05035          84 -------VILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVAD  156 (273)
T ss_pred             -------EEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECC
Confidence                   379999999999998442     13577778999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||+++.........                                                                  
T Consensus       157 fg~~~~~~~~~~~~------------------------------------------------------------------  170 (273)
T cd05035         157 FGLSKKIYSGDYYR------------------------------------------------------------------  170 (273)
T ss_pred             ccceeecccccccc------------------------------------------------------------------
Confidence            99987643110000                                                                  


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---  528 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---  528 (1092)
                                                         ......++..|+|||.+.+..++.++|||||||++|||++ +   
T Consensus       171 -----------------------------------~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p  215 (273)
T cd05035         171 -----------------------------------QGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTP  215 (273)
T ss_pred             -----------------------------------ccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCC
Confidence                                               0001123456999999988889999999999999999997 4   


Q ss_pred             CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |...... ..+..+.....++.....++.+.+++.+||..||.+||++.|++++
T Consensus       216 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~  268 (273)
T cd05035         216 YPGVENH-EIYDYLRHGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREV  268 (273)
T ss_pred             CCCCCHH-HHHHHHHcCCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            3333222 2233333333334444567889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.94  E-value=3.1e-27  Score=242.96  Aligned_cols=224  Identities=15%  Similarity=0.098  Sum_probs=162.4

Q ss_pred             chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc-cCCCcccccCCCCCHHHHHhh---cCCCCCH
Q 001366          253 PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW-IGGLRQGSSDHGVNLREWLNA---RGHKGKR  328 (1092)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~GgsL~~~l~~---~~~~~~~  328 (1092)
                      ..+.+.+.++...-+..+|||++.+++..+-+.- +           | +.-.++..|+..|+|.+.|..   .|..+++
T Consensus        59 ~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~-D-----------~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE  126 (302)
T KOG2345|consen   59 QEDIEEALREIDNHRKFNSPNVLRLVDHQLREEK-D-----------GKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSE  126 (302)
T ss_pred             hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhc-c-----------CceeEEEEeehhccccHHHHHHHHhhcCCccCH
Confidence            4456777788877888899999887665442221 0           1 112347889999999999844   5667899


Q ss_pred             HHHHHHHHHHHHHHHHhhhcC--ccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhcccccccccc
Q 001366          329 IECLYIFRQIVALVDYHHTQG--VTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFT  406 (1092)
Q Consensus       329 ~~~~~i~~qil~~l~~lHs~g--IvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  406 (1092)
                      .+++.||.+|++||+++|...  ++||||||+|||+..++.+++.|||.+....-..                       
T Consensus       127 ~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i-----------------------  183 (302)
T KOG2345|consen  127 AQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQI-----------------------  183 (302)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCccccceEe-----------------------
Confidence            999999999999999999999  9999999999999999999999999887643100                       


Q ss_pred             ccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccc
Q 001366          407 TGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQS  486 (1092)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (1092)
                                                                                             ..+......
T Consensus       184 -----------------------------------------------------------------------~~~~~a~~l  192 (302)
T KOG2345|consen  184 -----------------------------------------------------------------------EGSRQALRL  192 (302)
T ss_pred             -----------------------------------------------------------------------echHHHHHH
Confidence                                                                                   000000112


Q ss_pred             cccccccccccccCcccccC---CCCCccccchhhhHHHHHHcCCCCcHHHHHHH-----HHhccccCCCCCCCCCChhH
Q 001366          487 TSVSEQLEEKWYASPEELSG---GVCTTSSNIYSLGVLFFELFGRFDSERALAAA-----MSDLRDRILPPSFLSENPKE  558 (1092)
Q Consensus       487 ~~~~~~~gt~~Y~aPE~l~~---~~~t~~sDIwSLGvll~ell~~f~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~  558 (1092)
                      +.......|..|+|||++.-   ...+.++|||||||+||+|+.+-.+.+...+-     +.......-.|+....+..+
T Consensus       193 Qe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~yse~l  272 (302)
T KOG2345|consen  193 QEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISIPNSSRYSEAL  272 (302)
T ss_pred             HHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccccccCCCCCccHHH
Confidence            22234455777999999875   44689999999999999999764443333321     11222222334444467889


Q ss_pred             HHHHHhccccCCCCCCCHHHHhhh
Q 001366          559 AGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       559 ~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ..|+.+||+.||.+||++.+++.+
T Consensus       273 ~~lik~mlqvdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  273 HQLIKSMLQVDPNQRPTIPELLSK  296 (302)
T ss_pred             HHHHHHHhcCCcccCCCHHHHHHH
Confidence            999999999999999999999874

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.94  E-value=1.8e-26  Score=253.03  Aligned_cols=240  Identities=13%  Similarity=0.090  Sum_probs=170.3

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|.||+|...+     +..++.|+...............+..++....|||++...+........+          
T Consensus         4 g~g~~g~vy~~~~~~-----~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~----------   68 (250)
T cd05085           4 GKGNFGEVFKGTLKD-----KTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIY----------   68 (250)
T ss_pred             CCCCCceEEEEEecC-----CcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccE----------
Confidence            357889999997644     33344444322211111222334556677889999998766543222222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+|||++|++|.+++......+++..++.++.|++.+|.|+|++|++||||||+||+++.++.+|++|||++..
T Consensus        69 ------lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~  142 (250)
T cd05085          69 ------IVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQ  142 (250)
T ss_pred             ------EEEECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCcccee
Confidence                  48999999999999977656678889999999999999999999999999999999999999999999998764


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .......                                                                         
T Consensus       143 ~~~~~~~-------------------------------------------------------------------------  149 (250)
T cd05085         143 EDDGIYS-------------------------------------------------------------------------  149 (250)
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            3210000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~  534 (1092)
                                                 .  .....++..|+|||.+.+..++.++|||||||++|||++ +   |.....
T Consensus       150 ---------------------------~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~  200 (250)
T cd05085         150 ---------------------------S--SGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTN  200 (250)
T ss_pred             ---------------------------c--CCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCH
Confidence                                       0  001122456999999998889999999999999999997 3   433322


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      . .....+.....+......++.+.+|+.+||.++|.+||++.++++.
T Consensus       201 ~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  247 (250)
T cd05085         201 Q-QAREQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKE  247 (250)
T ss_pred             H-HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHH
Confidence            2 2222222222223334457889999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=3.2e-25  Score=265.75  Aligned_cols=292  Identities=18%  Similarity=0.278  Sum_probs=237.1

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCCC----Ccc-cccceeeecCCCCeEEEEEecCCCCEEEEE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAG--VSKKIKIFEFNALFND----SVD-VYYPAVEMSNRSKLSCVCWNNYIKNYLASA  847 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg--~D~~I~Iwd~~~~~~~----~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~LaSg  847 (1092)
                      +.++...|.+|+.+|||..+||||  .|+.+.||+.......    ... .........|.+.|+|+.|+++ +.+||+|
T Consensus         9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAsG   87 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD-GSYLASG   87 (942)
T ss_pred             cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC-CCeEeec
Confidence            446677899999999999999999  9999999997753211    111 1122334569999999999998 9999999


Q ss_pred             ECCCcEEEEECCC----------C--------ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeee
Q 001366          848 DYDGVVKLWDACT----------G--------QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLAT  909 (1092)
Q Consensus       848 s~DgtV~IWD~~t----------g--------~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~  909 (1092)
                      |.|+.|.||+...          |        +++..+.+|...|..++|+| ++.+|||+|.|++|.|||.++.+++.+
T Consensus        88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~v  166 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKV  166 (942)
T ss_pred             cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeee
Confidence            9999999999762          1        36778999999999999999 899999999999999999999999988


Q ss_pred             Ee-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCC------CCCeEEEEEc-CCCEEEEEE----CC
Q 001366          910 IK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGH------EKAVSYVKFL-DSGTLVTAS----TD  977 (1092)
Q Consensus       910 l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H------~~~V~~v~fs-~~~~L~Sgs----~D  977 (1092)
                      +. |.+.|-.+.|+|-|. +||+-+.|++|+||++.+... .+...++      ...+..+.|+ ++.+|++..    .-
T Consensus       167 l~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i-~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~  244 (942)
T KOG0973|consen  167 LRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGI-EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK  244 (942)
T ss_pred             eecccccccceEECCccC-eeeeecCCceEEEEEccccee-eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence            88 678899999999995 999999999999999876432 2333222      3457889999 666777654    23


Q ss_pred             CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecC-----CC------------EEEEEecCCcEEEEeCCCCCc
Q 001366          978 NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTA-----DG------------YIACGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       978 g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-----g~------------~lasgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                      .++.|.+-.        ....-..+-||..++.++.|+|.     .+            .+|+||.|++|-||......|
T Consensus       245 ~~~~IieR~--------tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP  316 (942)
T KOG0973|consen  245 STIAIIERG--------TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP  316 (942)
T ss_pred             ceeEEEecC--------CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence            467888766        34456788899999999999982     11            678999999999999988888


Q ss_pred             eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1041 ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1041 i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +..++             +-.+..|..++|+|||..|.++|.||+|.++.+
T Consensus       317 l~vi~-------------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  317 LFVIH-------------NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF  354 (942)
T ss_pred             hhhhh-------------hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence            77654             122567999999999999999999999998864

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.94  E-value=4.9e-27  Score=262.69  Aligned_cols=242  Identities=17%  Similarity=0.219  Sum_probs=171.5

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||++...    ..+..++.|++.... ..........+..++...+|||++.+++........+          
T Consensus        11 ~g~~~~v~~~~~~----~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~----------   76 (286)
T cd07847          11 EGSYGVVFKCRNR----ETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLH----------   76 (286)
T ss_pred             ccCCeEEEEEEEC----CCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEE----------
Confidence            3467999998763    224455555442211 1112223345666788889999988766544322222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+|||+++++|..++.... .++..+++.++.||+.+|.|||++||+||||||+||+++.++.+|++|||++..
T Consensus        77 ------~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  149 (286)
T cd07847          77 ------LVFEYCDHTVLNELEKNPR-GVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARI  149 (286)
T ss_pred             ------EEEeccCccHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECcccccee
Confidence                  3899999999998876544 477889999999999999999999999999999999999999999999998876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +.....                                                                          
T Consensus       150 ~~~~~~--------------------------------------------------------------------------  155 (286)
T cd07847         150 LTGPGD--------------------------------------------------------------------------  155 (286)
T ss_pred             cCCCcc--------------------------------------------------------------------------
Confidence            431000                                                                          


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                   ......++.+|+|||.+.+ ..++.++|||||||++|||+++   |.+...
T Consensus       156 -----------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~  206 (286)
T cd07847         156 -----------------------------DYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSD  206 (286)
T ss_pred             -----------------------------cccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCCh
Confidence                                         0012346788999999876 5579999999999999999986   433222


Q ss_pred             HHHHHH---hccc-----------------cCCCC---------CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAAMS---DLRD-----------------RILPP---------SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~~~---~~~~-----------------~~~p~---------~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ....+.   .+..                 ...|.         .+...++.+.+|+.+||+++|++||++.|++.||||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         207 VDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEHPYF  286 (286)
T ss_pred             HHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhcCCCC
Confidence            222111   1100                 00111         123456778899999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.94  E-value=1e-26  Score=263.29  Aligned_cols=260  Identities=13%  Similarity=0.116  Sum_probs=174.3

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  ++.|.||++....    .+..++.|+........ ......++..++...+|||++.+.+........+  
T Consensus        14 y~~~~~lg~g~~~~v~~~~~~~----~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~--   87 (310)
T cd07865          14 YEKLAKIGQGTFGEVFKARHKK----TKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPY--   87 (310)
T ss_pred             eEEEEEeecCCCEEEEEEEECC----CCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccc--
Confidence            4444444  4789999998632    34555655443222111 1222345667788889999998665433222111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                      ...      ......+|||+.+ +|.+++......++..+++.++.||+.||.|||++||+|+||||+||+++.++.+|+
T Consensus        88 ~~~------~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl  160 (310)
T cd07865          88 NRY------KGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKL  160 (310)
T ss_pred             cCC------CceEEEEEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEE
Confidence            000      0112347888875 899998776667888899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||++..+......                                                                 
T Consensus       161 ~dfg~~~~~~~~~~~-----------------------------------------------------------------  175 (310)
T cd07865         161 ADFGLARAFSLSKNS-----------------------------------------------------------------  175 (310)
T ss_pred             CcCCCcccccCCccc-----------------------------------------------------------------
Confidence            999998764411000                                                                 


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                        ........+++..|+|||.+.+. .++.++|||||||++|||+++ 
T Consensus       176 ----------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~  221 (310)
T cd07865         176 ----------------------------------KPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRS  221 (310)
T ss_pred             ----------------------------------CCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCC
Confidence                                              00001134578889999998764 478999999999999999986 


Q ss_pred             --CCcHHHHH--HHHHhccccCCCC------------------C----------CCCCChhHHHHHHhccccCCCCCCCH
Q 001366          529 --FDSERALA--AAMSDLRDRILPP------------------S----------FLSENPKEAGFCLWQLHPEPLSRPTT  576 (1092)
Q Consensus       529 --f~~~~~~~--~~~~~~~~~~~p~------------------~----------~~~~~~~~~~li~~lL~~dP~~Rpsa  576 (1092)
                        |.......  ..+..+.....++                  .          ....++.+.+|+.+||++||.+|||+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~  301 (310)
T cd07865         222 PIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDA  301 (310)
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCH
Confidence              33322211  1111111111100                  0          01134667899999999999999999


Q ss_pred             HHHhhhhhh
Q 001366          577 REILQSEVT  585 (1092)
Q Consensus       577 ~eiL~~~~~  585 (1092)
                      +++|+||||
T Consensus       302 ~e~l~h~~f  310 (310)
T cd07865         302 DTALNHDFF  310 (310)
T ss_pred             HHHhcCCCC
Confidence            999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.94  E-value=7.9e-27  Score=270.20  Aligned_cols=247  Identities=16%  Similarity=0.187  Sum_probs=170.8

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|+||++....    .+..++.|+..... .........++..++...+|||++.++.....+....     ..   
T Consensus        26 ~g~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-----~~---   93 (353)
T cd07850          26 SGAQGIVCAAYDTV----TGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLE-----EF---   93 (353)
T ss_pred             cCCCEEEEEEEECC----CCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcc-----cc---
Confidence            34789999997632    24555665543221 1222334456677788889999998765533221110     00   


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                        ...-.+|||+.| +|.+++...   ++..++..++.||+.||+|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        94 --~~~~lv~e~~~~-~l~~~~~~~---l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~  167 (353)
T cd07850          94 --QDVYLVMELMDA-NLCQVIQMD---LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLART  167 (353)
T ss_pred             --CcEEEEEeccCC-CHHHHHhhc---CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCcccee
Confidence              001247899865 899888654   77778999999999999999999999999999999999999999999998865


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       168 ~~~~~---------------------------------------------------------------------------  172 (353)
T cd07850         168 AGTSF---------------------------------------------------------------------------  172 (353)
T ss_pred             CCCCC---------------------------------------------------------------------------
Confidence            33100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                   ......+|+.|+|||.+.+..++.++|||||||+||+|+++   |......
T Consensus       173 -----------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~  223 (353)
T cd07850         173 -----------------------------MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHI  223 (353)
T ss_pred             -----------------------------CCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHH
Confidence                                         00133578889999999999999999999999999999986   4332221


Q ss_pred             HHHHHhcc----------------------ccC---------------CCCC----CCCCChhHHHHHHhccccCCCCCC
Q 001366          536 AAAMSDLR----------------------DRI---------------LPPS----FLSENPKEAGFCLWQLHPEPLSRP  574 (1092)
Q Consensus       536 ~~~~~~~~----------------------~~~---------------~p~~----~~~~~~~~~~li~~lL~~dP~~Rp  574 (1092)
                      ......+.                      .+.               .+..    ....++.+.+|+.+||++||++||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~  303 (353)
T cd07850         224 DQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRI  303 (353)
T ss_pred             HHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCc
Confidence            11111000                      000               0000    001234578999999999999999


Q ss_pred             CHHHHhhhhhhhhh
Q 001366          575 TTREILQSEVTNEF  588 (1092)
Q Consensus       575 sa~eiL~~~~~~~~  588 (1092)
                      |+.|+|+||||...
T Consensus       304 t~~eiL~~~~~~~~  317 (353)
T cd07850         304 SVDDALQHPYINVW  317 (353)
T ss_pred             CHHHHhcChhHhhc
Confidence            99999999999753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.94  E-value=7.7e-27  Score=256.84  Aligned_cols=238  Identities=18%  Similarity=0.145  Sum_probs=173.4

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      ++.|.||++...    ..+..++.|.+..............+...++..+|||++.+.+....+...+            
T Consensus        11 g~~g~v~~~~~~----~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~------------   74 (255)
T cd08219          11 GSFGRALLVQHV----NSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLY------------   74 (255)
T ss_pred             cCCeEEEEEEEc----CCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEE------------
Confidence            467888888652    2234444444322222233344445566778889999998776655433333            


Q ss_pred             cCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                          .+|+|+.|++|.+++.. .+..++...++.++.||+.||.|||++||+|+||||+||+++.++.++++|||+++..
T Consensus        75 ----lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~  150 (255)
T cd08219          75 ----IVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLL  150 (255)
T ss_pred             ----EEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceee
Confidence                37999999999999965 3445778789999999999999999999999999999999999999999999988654


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       151 ~~~~----------------------------------------------------------------------------  154 (255)
T cd08219         151 TSPG----------------------------------------------------------------------------  154 (255)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALA  536 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~  536 (1092)
                                                 .......|++.|+|||++.+..++.++|+|||||++|+|+++   |.......
T Consensus       155 ---------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~  207 (255)
T cd08219         155 ---------------------------AYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKN  207 (255)
T ss_pred             ---------------------------cccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHH
Confidence                                       000134578889999999988899999999999999999986   43332222


Q ss_pred             HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          537 AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      . ...+.....++.....+..+.+|+.+||..+|.+||++.+|+.-
T Consensus       208 ~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         208 L-ILKVCQGSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             H-HHHHhcCCCCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            2 22233333333344557889999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.94  E-value=7.8e-27  Score=262.57  Aligned_cols=247  Identities=16%  Similarity=0.168  Sum_probs=167.2

Q ss_pred             cccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ++.|.||+|....    .+..++.|+...... ........++...+... .|||++.+......+....    ....+ 
T Consensus        12 g~~g~vy~~~~~~----~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~----~~~~~-   82 (295)
T cd07837          12 GTYGKVYKARDKN----TGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNG----KPSLY-   82 (295)
T ss_pred             cCCeEEEEEEECC----CCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCC----CceEE-
Confidence            4689999997632    234445544321111 11112233344555555 5699987765544332200    11111 


Q ss_pred             cccCCCcccccCCCCCHHHHHhhc----CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc-CCcEEEecc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNAR----GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ-SNQVKYIGP  373 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~----~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~-~~~vkl~Df  373 (1092)
                            ++|+|++| +|.+++...    +..++...++.++.||+.||.|||++||+||||||+||+++. ++.+|++||
T Consensus        83 ------lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~df  155 (295)
T cd07837          83 ------LVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADL  155 (295)
T ss_pred             ------EEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeec
Confidence                  37999987 899998543    235788899999999999999999999999999999999998 889999999


Q ss_pred             cccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCC
Q 001366          374 IIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPH  453 (1092)
Q Consensus       374 g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  453 (1092)
                      |+++.+..+.                                                                      
T Consensus       156 g~~~~~~~~~----------------------------------------------------------------------  165 (295)
T cd07837         156 GLGRAFSIPV----------------------------------------------------------------------  165 (295)
T ss_pred             ccceecCCCc----------------------------------------------------------------------
Confidence            9876533100                                                                      


Q ss_pred             CCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---C
Q 001366          454 SHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---F  529 (1092)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f  529 (1092)
                                                       ...+...++++|+|||.+.+ ..++.++|||||||++|||+++   |
T Consensus       166 ---------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~  212 (295)
T cd07837         166 ---------------------------------KSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLF  212 (295)
T ss_pred             ---------------------------------cccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCC
Confidence                                             00012346788999999876 4579999999999999999986   4


Q ss_pred             CcHHHHHHHHHhccc------cC------------C---CC-----CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          530 DSERALAAAMSDLRD------RI------------L---PP-----SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       530 ~~~~~~~~~~~~~~~------~~------------~---p~-----~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      .+.............      ..            .   .+     .....++++.+||.+||+++|.+||++.|+|.||
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~~  292 (295)
T cd07837         213 PGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTHP  292 (295)
T ss_pred             CCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhcCC
Confidence            333333222221110      00            0   00     1134577889999999999999999999999999


Q ss_pred             hhh
Q 001366          584 VTN  586 (1092)
Q Consensus       584 ~~~  586 (1092)
                      ||+
T Consensus       293 ~~~  295 (295)
T cd07837         293 YFD  295 (295)
T ss_pred             CcC
Confidence            984

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.94  E-value=7.5e-27  Score=261.06  Aligned_cols=242  Identities=17%  Similarity=0.163  Sum_probs=168.9

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCch-h-hHhh---hhhhhhhccCCCCCCCccccceecCCCCCCCccCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-D-AALK---AAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTG  294 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1092)
                      .++.|.||++...+    .++.++.|+........ . ....   ....+++....||+++........+...+      
T Consensus         4 ~g~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------   73 (278)
T cd05606           4 RGGFGEVYGCRKAD----TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS------   73 (278)
T ss_pred             cCCCeEEEEEEEec----CCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEE------
Confidence            46789999887532    24556665543222111 1 1111   12223445567888876544433222222      


Q ss_pred             CCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          295 VPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       295 ~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                                .+|||+.|++|.+++...+ .+++.+++.++.|++.||.|||++||+||||||+||+++.++.+|++|||
T Consensus        74 ----------~v~e~~~g~~L~~~l~~~~-~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg  142 (278)
T cd05606          74 ----------FILDLMNGGDLHYHLSQHG-VFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLG  142 (278)
T ss_pred             ----------EEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCc
Confidence                      3799999999999997654 57788999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.+....                                                                       
T Consensus       143 ~~~~~~~~~-----------------------------------------------------------------------  151 (278)
T cd05606         143 LACDFSKKK-----------------------------------------------------------------------  151 (278)
T ss_pred             CccccCccC-----------------------------------------------------------------------
Confidence            876532100                                                                       


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC---CC
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                        .....|+..|+|||.+.++ .++.++||||+||++|||+++   |.
T Consensus       152 ----------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~  197 (278)
T cd05606         152 ----------------------------------PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFR  197 (278)
T ss_pred             ----------------------------------CcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCC
Confidence                                              0023578889999999754 689999999999999999986   32


Q ss_pred             cHH--HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          531 SER--ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       531 ~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      ...  ...... .......++.....++.+.+++.+||..+|.+||     ++.++++||||...
T Consensus       198 ~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~~~~~~~  261 (278)
T cd05606         198 QHKTKDKHEID-RMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSL  261 (278)
T ss_pred             CCCccchHHHH-HHhhccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhCccccCC
Confidence            221  111111 1111111122223478899999999999999999     99999999999774

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.94  E-value=1.4e-26  Score=259.67  Aligned_cols=245  Identities=17%  Similarity=0.193  Sum_probs=179.6

Q ss_pred             hhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          217 KTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       217 ~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      +...+|.|.||++....    .+..++.|+......  .......+..++...+|+|++........+...+        
T Consensus        26 ~l~~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~--------   91 (286)
T cd06614          26 KIGEGASGEVYKATDRA----TGKEVAIKKMRLRKQ--NKELIINEILIMKDCKHPNIVDYYDSYLVGDELW--------   91 (286)
T ss_pred             hccCCCCeEEEEEEEcc----CCcEEEEEEEecCch--hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEE--------
Confidence            44455789999998741    234455554432222  2333445556778889999988776655443333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              .+++|++|++|.+++......++..++..++.||+.||.|||+.||+|+||||+||+++.++.++++|||++
T Consensus        92 --------lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~  163 (286)
T cd06614          92 --------VVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFA  163 (286)
T ss_pred             --------EEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchh
Confidence                    379999999999999876656888899999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      .......                                                                         
T Consensus       164 ~~~~~~~-------------------------------------------------------------------------  170 (286)
T cd06614         164 AQLTKEK-------------------------------------------------------------------------  170 (286)
T ss_pred             hhhccch-------------------------------------------------------------------------
Confidence            5433100                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCC---CcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRF---DSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f---~~~~  533 (1092)
                                                    .......++..|+|||.+.+..++.++|+|||||+||+|+++.   ....
T Consensus       171 ------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~  220 (286)
T cd06614         171 ------------------------------SKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREP  220 (286)
T ss_pred             ------------------------------hhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCC
Confidence                                          0001335678899999999888999999999999999999863   2222


Q ss_pred             HHHHHHHhccccCCCC--CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPP--SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~--~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ......... ....++  .....+..+.+|+.+||+++|.+||++.++|+|+||..
T Consensus       221 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~  275 (286)
T cd06614         221 PLRALFLIT-TKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKK  275 (286)
T ss_pred             HHHHHHHHH-hcCCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHHhhChHhhc
Confidence            222222111 112221  11224677899999999999999999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.94  E-value=1.1e-26  Score=259.33  Aligned_cols=243  Identities=16%  Similarity=0.145  Sum_probs=175.8

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|.||+|....    .+..++.|+..............++...+....|||++.++.....+...+            
T Consensus        15 G~~~~vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~------------   78 (277)
T cd06641          15 GSFGEVFKGIDNR----TQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLW------------   78 (277)
T ss_pred             cCCeEEEEEEECC----CCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEE------------
Confidence            4679999996521    134455554422222222223334556677889999998766544333222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          ++|||+.|++|.+++...  .++...++.++.|++.+|.|||++||+|+||||+||+++.++.++++|||+++.+.
T Consensus        79 ----lv~e~~~~~~l~~~i~~~--~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~  152 (277)
T cd06641          79 ----IIMEYLGGGSALDLLEPG--PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT  152 (277)
T ss_pred             ----EEEEeCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecc
Confidence                489999999999999754  57788899999999999999999999999999999999999999999999876543


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ...                                                                             
T Consensus       153 ~~~-----------------------------------------------------------------------------  155 (277)
T cd06641         153 DTQ-----------------------------------------------------------------------------  155 (277)
T ss_pred             cch-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHH--HHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSER--ALAAA  538 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~--~~~~~  538 (1092)
                                                .......|+.+|+|||.+.+..++.++|+|||||++|+|+++..+..  .....
T Consensus       156 --------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~  209 (277)
T cd06641         156 --------------------------IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKV  209 (277)
T ss_pred             --------------------------hhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHH
Confidence                                      00013457888999999988888999999999999999999733321  11111


Q ss_pred             HHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          539 MSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       539 ~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ...+.....+......++.+.+|+.+||+.+|.+||++.++++||||...
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~~~~  259 (277)
T cd06641         210 LFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFIVRF  259 (277)
T ss_pred             HHHHhcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhhh
Confidence            11222222222233456788999999999999999999999999999774

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.94  E-value=1.4e-26  Score=267.11  Aligned_cols=253  Identities=15%  Similarity=0.133  Sum_probs=171.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCC--ccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLN--AFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  287 (1092)
                      .|.+.+.++  |.|+||++....  .... +..++.|+..............++...+... .|||++.++.........
T Consensus         8 ~~~~~~~lG~G~fg~V~~~~~~~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~   86 (343)
T cd05103           8 RLKLGKPLGRGAFGQVIEADAFGIDKTAT-CRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   86 (343)
T ss_pred             HhcccccccCCccceEEEEeeccCCcccc-ceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCc
Confidence            455555554  789999997421  1111 3445555543222222233444566666666 689988766543321110


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC--------------------------------------------
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG--------------------------------------------  323 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~--------------------------------------------  323 (1092)
                                     ...+||||+||+|.++|....                                            
T Consensus        87 ---------------~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (343)
T cd05103          87 ---------------LMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSG  151 (343)
T ss_pred             ---------------eEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhcccccccccccccc
Confidence                           113799999999999996532                                            


Q ss_pred             ----------------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccc
Q 001366          324 ----------------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLE  381 (1092)
Q Consensus       324 ----------------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~  381 (1092)
                                            ..++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~  231 (343)
T cd05103         152 FVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYK  231 (343)
T ss_pred             ccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEeccccccccc
Confidence                                  1245667788999999999999999999999999999999999999999998876431


Q ss_pred             cccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccc
Q 001366          382 SASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEH  461 (1092)
Q Consensus       382 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  461 (1092)
                      ....                                                                            
T Consensus       232 ~~~~----------------------------------------------------------------------------  235 (343)
T cd05103         232 DPDY----------------------------------------------------------------------------  235 (343)
T ss_pred             Ccch----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             cccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHHHH
Q 001366          462 HTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERALAA  537 (1092)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~~  537 (1092)
                                               .......++..|+|||.+.+..++.++|||||||++|||++ +   |........
T Consensus       236 -------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~  290 (343)
T cd05103         236 -------------------------VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE  290 (343)
T ss_pred             -------------------------hhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHH
Confidence                                     00001234566999999998899999999999999999986 4   332221122


Q ss_pred             HHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          538 AMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       538 ~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ....+.....++.....++++.+++.+||+++|.+||++.+|++|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~  335 (343)
T cd05103         291 FCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  335 (343)
T ss_pred             HHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            222232222222223346889999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.94  E-value=8.5e-27  Score=264.03  Aligned_cols=247  Identities=15%  Similarity=0.093  Sum_probs=167.6

Q ss_pred             chhHHHhhhc--cccceeeeCCCCCcccccccc--ccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCC
Q 001366          211 FSEFFVKTTL--KGKGIVCRGPPLNAFKERRGM--IDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       211 f~~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  285 (1092)
                      |..|.+...+  +|.|+||++...+.    +..  ++.+.+.............++...+... .|||++.+......+.
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~a~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~   81 (303)
T cd05088           6 WNDIKFQDVIGEGNFGQVLKARIKKD----GLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG   81 (303)
T ss_pred             hhhceeeeeecCCCCceEEEEEEccC----CceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCC
Confidence            4445555444  46899999975321    111  2222221111111112223344455555 8999998776654433


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCc
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGV  350 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gI  350 (1092)
                      ..+                .+|||++|++|.++|...+               ..++..+++.++.||+.||+|||++||
T Consensus        82 ~~~----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi  145 (303)
T cd05088          82 YLY----------------LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQF  145 (303)
T ss_pred             Cce----------------EEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence            333                3899999999999996543               246778899999999999999999999


Q ss_pred             cccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccc
Q 001366          351 TFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLF  430 (1092)
Q Consensus       351 vHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (1092)
                      +||||||+|||++.++.+|++|||+++......                                               
T Consensus       146 ~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~-----------------------------------------------  178 (303)
T cd05088         146 IHRDLAARNILVGENYVAKIADFGLSRGQEVYV-----------------------------------------------  178 (303)
T ss_pred             cccccchheEEecCCCcEEeCccccCcccchhh-----------------------------------------------
Confidence            999999999999999999999999875321000                                               


Q ss_pred             cCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCC
Q 001366          431 PSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCT  510 (1092)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t  510 (1092)
                                                                             .  -....++..|+|||.+.+..++
T Consensus       179 -------------------------------------------------------~--~~~~~~~~~y~aPE~~~~~~~~  201 (303)
T cd05088         179 -------------------------------------------------------K--KTMGRLPVRWMAIESLNYSVYT  201 (303)
T ss_pred             -------------------------------------------------------h--cccCCCcccccCHHHHhccCCc
Confidence                                                                   0  0011234569999999888899


Q ss_pred             ccccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          511 TSSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       511 ~~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .++|||||||+||||++ +   |...... .....+.....++.....++.+.+|+.+||+.+|++||++.++|++
T Consensus       202 ~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  276 (303)
T cd05088         202 TNSDVWSYGVLLWEIVSLGGTPYCGMTCA-ELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  276 (303)
T ss_pred             ccccchhhhhHHHHHHhcCCCCcccCChH-HHHHHHhcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            99999999999999996 4   3222211 1222222222222233456888999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.94  E-value=1.7e-26  Score=259.42  Aligned_cols=243  Identities=17%  Similarity=0.101  Sum_probs=169.0

Q ss_pred             ccccceeeeCCCCCcccc-ccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKE-RRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|.||++...+.... .+..++.|.....+ .........+...+....||+++.+......+...+          
T Consensus        15 ~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~----------   83 (288)
T cd05093          15 EGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS-DNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI----------   83 (288)
T ss_pred             CcCCeeEEeeEeccCCCCCcceEEEEEecCCcC-HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccE----------
Confidence            346899999875332221 11223333332111 112223344556777889999998766544332222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                            .+|||+.|++|.++|...+            ..+++..++.++.||+.||+|||++||+||||||+||+++.++
T Consensus        84 ------lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~  157 (288)
T cd05093          84 ------MVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENL  157 (288)
T ss_pred             ------EEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCC
Confidence                  3899999999999997543            2477889999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+|++|||+++........                                                             
T Consensus       158 ~~kl~dfg~~~~~~~~~~~-------------------------------------------------------------  176 (288)
T cd05093         158 LVKIGDFGMSRDVYSTDYY-------------------------------------------------------------  176 (288)
T ss_pred             cEEeccCCccccccCCcee-------------------------------------------------------------
Confidence            9999999988754310000                                                             


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              .......++..|+|||.+.+..++.++|||||||++|||+
T Consensus       177 ----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~  216 (288)
T cd05093         177 ----------------------------------------RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIF  216 (288)
T ss_pred             ----------------------------------------ecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHH
Confidence                                                    0000223567799999999888999999999999999999


Q ss_pred             C-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          527 G-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       527 ~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      + +   |........... +.....++.....++.+.+|+.+||+++|.+|||+.+++.
T Consensus       217 t~g~~p~~~~~~~~~~~~-i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~  274 (288)
T cd05093         217 TYGKQPWYQLSNNEVIEC-ITQGRVLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHS  274 (288)
T ss_pred             hCCCCCCCCCCHHHHHHH-HHcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            7 5   322222222222 2222233333345788999999999999999999999965

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.94  E-value=2e-26  Score=253.62  Aligned_cols=246  Identities=13%  Similarity=0.043  Sum_probs=172.3

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|+||+|...+. ......++.|.............-.++...+...+|||++.++..... ...           
T Consensus         4 g~g~~~~v~~~~~~~~-~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~-----------   70 (257)
T cd05040           4 GDGSFGVVRRGEWSTS-GGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPL-----------   70 (257)
T ss_pred             CccCcccEEeeeEecC-CCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeE-----------
Confidence            3478899999986431 110112344444332222233445566677888899999986655332 111           


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                           ..+|||+++++|.+++.... ..++...+..++.||+.||+|||++||+||||||+||+++.++.+|++|||+++
T Consensus        71 -----~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~  145 (257)
T cd05040          71 -----MMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMR  145 (257)
T ss_pred             -----EEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccc
Confidence                 13799999999999997754 467888999999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+......                                                                        
T Consensus       146 ~~~~~~~~------------------------------------------------------------------------  153 (257)
T cd05040         146 ALPQNEDH------------------------------------------------------------------------  153 (257)
T ss_pred             cccccccc------------------------------------------------------------------------
Confidence            65410000                                                                        


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-CCCc---HH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-RFDS---ER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~f~~---~~  533 (1092)
                                  |                .......++..|+|||.+.+..++.++|||||||++|||++ +..+   ..
T Consensus       154 ------------~----------------~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  205 (257)
T cd05040         154 ------------Y----------------VMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLS  205 (257)
T ss_pred             ------------e----------------ecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCC
Confidence                        0                00002235667999999998889999999999999999997 5322   22


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ..............++.....++.+.+++.+||..+|++||++.++++.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~  254 (257)
T cd05040         206 GSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTFAALREF  254 (257)
T ss_pred             HHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHH
Confidence            2222111111222222233456788999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.94  E-value=1.2e-26  Score=263.03  Aligned_cols=259  Identities=15%  Similarity=0.120  Sum_probs=175.9

Q ss_pred             cccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ++.|.||++....    .+..++.|.......  ........++..++...+|||++.++.....+...+          
T Consensus        12 g~~~~v~~~~~~~----~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~----------   77 (305)
T cd05609          12 GAYGAVYLVRHKE----TRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLC----------   77 (305)
T ss_pred             CCCeeEEEEEECC----CCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEE----------
Confidence            4678899887532    234444443322111  111223334556777889999998765544333222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            ++|||++|++|.++|+..+ .+++..+..++.|++.||.|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        78 ------lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~  150 (305)
T cd05609          78 ------MVMEYVEGGDCATLLKNIG-ALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKI  150 (305)
T ss_pred             ------EEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccc
Confidence                  3899999999999997765 467778999999999999999999999999999999999999999999998874


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ...+...            +...                                               ..        
T Consensus       151 ~~~~~~~------------~~~~-----------------------------------------------~~--------  163 (305)
T cd05609         151 GLMSLTT------------NLYE-----------------------------------------------GH--------  163 (305)
T ss_pred             cCcCccc------------cccc-----------------------------------------------cc--------
Confidence            2210000            0000                                               00        


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                         ...  ...........|+..|+|||.+.+..++.++|||||||+||||+++   |.+....
T Consensus       164 -------------------~~~--~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~  222 (305)
T cd05609         164 -------------------IEK--DTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPE  222 (305)
T ss_pred             -------------------ccc--chhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                               000  0000011134678889999999988899999999999999999986   4333222


Q ss_pred             HHHHHhcc-cc-CCCCCCCCCChhHHHHHHhccccCCCCCCC---HHHHhhhhhhhhhh
Q 001366          536 AAAMSDLR-DR-ILPPSFLSENPKEAGFCLWQLHPEPLSRPT---TREILQSEVTNEFQ  589 (1092)
Q Consensus       536 ~~~~~~~~-~~-~~p~~~~~~~~~~~~li~~lL~~dP~~Rps---a~eiL~~~~~~~~~  589 (1092)
                       ....... .. ..|......++.+.+|+.+||+++|.+||+   +.++|+||||....
T Consensus       223 -~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~~~~~~~  280 (305)
T cd05609         223 -ELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQHRFFLGLD  280 (305)
T ss_pred             -HHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChhhccCccCHHHHHhCccccCCC
Confidence             2222222 21 222222345778899999999999999998   79999999997643

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.1e-26  Score=256.52  Aligned_cols=240  Identities=19%  Similarity=0.182  Sum_probs=170.9

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchh-hH--hhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-AA--LKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .++.|.||++...+    .+..++.|+......... ..  .......+.....|||++.++.....+...+        
T Consensus         6 ~g~~~~v~~a~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~--------   73 (260)
T cd05611           6 KGAFGSVYLAKKRS----TGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLY--------   73 (260)
T ss_pred             cCCCeeEEEEEecC----CCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEE--------
Confidence            46789999997632    244555555432221111 11  1122222344558899887765544332222        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              .+|||+.|++|.++++..+ .++...+..++.||+.||.|||++||+||||+|+||+++.++.+|++|||++
T Consensus        74 --------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~  144 (260)
T cd05611          74 --------LVMEYLNGGDCASLIKTLG-GLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLS  144 (260)
T ss_pred             --------EEEeccCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccc
Confidence                    3799999999999997654 4677799999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +....                                                                           
T Consensus       145 ~~~~~---------------------------------------------------------------------------  149 (260)
T cd05611         145 RNGLE---------------------------------------------------------------------------  149 (260)
T ss_pred             eeccc---------------------------------------------------------------------------
Confidence            54220                                                                           


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                      .....|+..|+|||.+.+..++.++|||||||+||||+++   |....
T Consensus       150 --------------------------------~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  197 (260)
T cd05611         150 --------------------------------NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAET  197 (260)
T ss_pred             --------------------------------cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCC
Confidence                                            0023467779999999988899999999999999999986   43322


Q ss_pred             HHHHHHHhccc-c-CCCC-CCCCCChhHHHHHHhccccCCCCCCCH---HHHhhhhhhhhh
Q 001366          534 ALAAAMSDLRD-R-ILPP-SFLSENPKEAGFCLWQLHPEPLSRPTT---REILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~-~-~~p~-~~~~~~~~~~~li~~lL~~dP~~Rpsa---~eiL~~~~~~~~  588 (1092)
                      ... ....+.. . ..++ .....++.+.+|+.+||..+|++||++   .|+|.||||...
T Consensus       198 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~~~~~~~~  257 (260)
T cd05611         198 PDA-VFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSHPFFKSI  257 (260)
T ss_pred             HHH-HHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHcChHhhcC
Confidence            222 1111111 1 1222 222457889999999999999999955   799999999753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.94  E-value=1.2e-26  Score=260.08  Aligned_cols=251  Identities=17%  Similarity=0.127  Sum_probs=178.5

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      ..|.+.+.++  +.|.||++...+    .+..++.|+...............+..++...+|||++..+.........+ 
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~----~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~-   79 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIP----TGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNIC-   79 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcC----CCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEE-
Confidence            3455555554  689999988632    133444444322222222233345566677889999998776655433222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCCcE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                     .+|||+.|++|.+++...+ .++...+..++.|++.+|.|||+ +||+||||||+||+++.++.+
T Consensus        80 ---------------lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~  143 (284)
T cd06620          80 ---------------MCMEFMDCGSLDRIYKKGG-PIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQI  143 (284)
T ss_pred             ---------------EEEecCCCCCHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcE
Confidence                           3899999999999997654 46777899999999999999997 699999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      +++|||++.......                                                                 
T Consensus       144 ~l~d~gl~~~~~~~~-----------------------------------------------------------------  158 (284)
T cd06620         144 KLCDFGVSGELINSI-----------------------------------------------------------------  158 (284)
T ss_pred             EEccCCcccchhhhc-----------------------------------------------------------------
Confidence            999999875432000                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                              ....+|+..|+|||.+.+..++.++|||||||++|||+++
T Consensus       159 ----------------------------------------~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg  198 (284)
T cd06620         159 ----------------------------------------ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALG  198 (284)
T ss_pred             ----------------------------------------cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhC
Confidence                                                    0024578889999999888899999999999999999986


Q ss_pred             ---CCcHHH----------HHHHHHhccccCCCCCC-CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 ---FDSERA----------LAAAMSDLRDRILPPSF-LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~----------~~~~~~~~~~~~~p~~~-~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                         |.....          .............+... ...++++.+|+.+||.+||.+||++.|+++|+||...
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~~  272 (284)
T cd06620         199 KFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQA  272 (284)
T ss_pred             CCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccc
Confidence               332211          11112222211112111 1245778899999999999999999999999998654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.8e-26  Score=254.46  Aligned_cols=243  Identities=15%  Similarity=0.073  Sum_probs=169.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||+|.....-. ....++.|+..............++...+....||+++.+......+.              
T Consensus         5 ~G~~g~v~~~~~~~~~~-~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--------------   69 (257)
T cd05060           5 HGNFGSVVKGVYLMKSG-KEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEP--------------   69 (257)
T ss_pred             ccCceeEEEeEeeccCC-CcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCc--------------
Confidence            46789999986522110 113344444433333223334445566777789999988654322111              


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                         ...+|+|+.|++|.++|.... .+++..++.++.||+.+|+|||.+||+||||||+||+++.++.+|++|||+++.+
T Consensus        70 ---~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~  145 (257)
T cd05060          70 ---LMLVMELAPLGPLLKYLKKRR-EIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRAL  145 (257)
T ss_pred             ---eEEEEEeCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEecccccccee
Confidence               113899999999999997765 5777799999999999999999999999999999999999999999999988764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ......                                                                          
T Consensus       146 ~~~~~~--------------------------------------------------------------------------  151 (257)
T cd05060         146 GAGSDY--------------------------------------------------------------------------  151 (257)
T ss_pred             ecCCcc--------------------------------------------------------------------------
Confidence            310000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-CCCcHH--HHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-RFDSER--ALA  536 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~f~~~~--~~~  536 (1092)
                                                ........++..|+|||.+.+..++.++|||||||++|||++ +..+..  ...
T Consensus       152 --------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~  205 (257)
T cd05060         152 --------------------------YRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGA  205 (257)
T ss_pred             --------------------------cccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHH
Confidence                                      000001123456999999998889999999999999999997 533211  111


Q ss_pred             HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          537 AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      .....+......+.....++.+.+|+.+||.++|.+||++.++++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~  250 (257)
T cd05060         206 EVIAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELES  250 (257)
T ss_pred             HHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            222223222223334455788999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.7e-24  Score=248.58  Aligned_cols=310  Identities=17%  Similarity=0.248  Sum_probs=235.7

Q ss_pred             EeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCC
Q 001366          749 GAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNR  828 (1092)
Q Consensus       749 ~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~  828 (1092)
                      -++.||.+++|+...-+..     -.+.+|...|+++.|+..|..||+||.|+.|.+||+-..       .-.....+|+
T Consensus        82 VGYaDGsVqif~~~s~~~~-----~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E-------~Gl~rL~GHk  149 (888)
T KOG0306|consen   82 VGYADGSVQIFSLESEEIL-----ITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE-------EGLFRLRGHK  149 (888)
T ss_pred             EEecCceEEeeccCCCcee-----eeecccccceEEEEEcccCceEeecCCCccEEEEEeccc-------eeeEEeecch
Confidence            5689999999997654222     246799999999999999999999999999999998641       1223456899


Q ss_pred             CCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCC-----
Q 001366          829 SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE-----  903 (1092)
Q Consensus       829 ~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~-----  903 (1092)
                      ..|+..-|... .++|+|+|.|+.|++||+.+..|+.+...|...||++++.+   +.+++++.|+.+++|++..     
T Consensus       150 d~iT~~~F~~~-~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~  225 (888)
T KOG0306|consen  150 DSITQALFLNG-DSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEK  225 (888)
T ss_pred             HHHhHHhccCC-CeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccc
Confidence            99999888875 78999999999999999999999999999999999999976   7899999999999999810     


Q ss_pred             --------------------------------------------------------------------------------
Q 001366          904 --------------------------------------------------------------------------------  903 (1092)
Q Consensus       904 --------------------------------------------------------------------------------  903 (1092)
                                                                                                      
T Consensus       226 ~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~  305 (888)
T KOG0306|consen  226 ETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEK  305 (888)
T ss_pred             cccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhh
Confidence                                                                                            


Q ss_pred             ---------------------------Cce----------------------------eeeE---ecCCceEEEEEccCC
Q 001366          904 ---------------------------KNS----------------------------LATI---KNIANVCCVQFSAHS  925 (1092)
Q Consensus       904 ---------------------------~~~----------------------------l~~l---~~~~~V~sl~fsp~~  925 (1092)
                                                 +..                            +..+   .|...|.+++++.+.
T Consensus       306 sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~  385 (888)
T KOG0306|consen  306 SLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS  385 (888)
T ss_pred             hHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc
Confidence                                       000                            0000   022345666666554


Q ss_pred             CeEEEEEECCCeEEEEEcCCCCc---------------------------------------ceEEecCCCCCeEEEEEc
Q 001366          926 SHLLAFGSADYRTYCYDLRNARA---------------------------------------PWCVLAGHEKAVSYVKFL  966 (1092)
Q Consensus       926 ~~~latgs~Dg~I~vwDlr~~~~---------------------------------------~~~~l~~H~~~V~~v~fs  966 (1092)
                        .++..+..+.+++|+..+.+.                                       .+.+..+|.+.|++++.+
T Consensus       386 --~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~  463 (888)
T KOG0306|consen  386 --ILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS  463 (888)
T ss_pred             --eeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec
Confidence              344444566777777764432                                       122346799999999998


Q ss_pred             -CCCEEEEEECCCeEEEEEcCCCCCCCCCCCcee-----EEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCc
Q 001366          967 -DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACS-----LTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       967 -~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~-----~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                       ++..++|||.|.+|++||..--........+.+     +++ .-+..|.|+++||||++||.+=-|++|+||.+.+-+.
T Consensus       464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF  542 (888)
T KOG0306|consen  464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF  542 (888)
T ss_pred             CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence             677899999999999999863211110111111     112 2356799999999999999999999999998765432


Q ss_pred             eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1041 ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1041 i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ..              .+-||.-+|.+|..+||+++++|||.|..|+||=+
T Consensus       543 fl--------------sLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL  579 (888)
T KOG0306|consen  543 FL--------------SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL  579 (888)
T ss_pred             ee--------------eecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence            22              23578899999999999999999999999999954

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=8.2e-27  Score=258.73  Aligned_cols=245  Identities=15%  Similarity=0.125  Sum_probs=169.9

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||++....    .++.++.|++.....  .......+..++... .|+|++.+++.........   ....    
T Consensus        17 g~~~~v~~~~~~~----~~~~~~~k~~~~~~~--~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~---~~~~----   83 (275)
T cd06608          17 GTYGKVYKARHKK----TGQLVAIKIMDIIED--EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPG---NDDQ----   83 (275)
T ss_pred             CCCeEEEEEEECC----CCcEEEEEEEecCch--hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCC---cceE----
Confidence            4678999988632    234455555432221  122233344445555 7999998776655433210   0001    


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR---GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~---~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                         ..++|+|++|++|.+++...   +..++...+..++.||+.||.|||++||+|+||+|+||+++.++.+|++|||++
T Consensus        84 ---~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~  160 (275)
T cd06608          84 ---LWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVS  160 (275)
T ss_pred             ---EEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccc
Confidence               12489999999999998653   356788899999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      .......                                                                         
T Consensus       161 ~~~~~~~-------------------------------------------------------------------------  167 (275)
T cd06608         161 AQLDSTL-------------------------------------------------------------------------  167 (275)
T ss_pred             eecccch-------------------------------------------------------------------------
Confidence            6533100                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----CCCCccccchhhhHHHHHHcCC---
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----GVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                    .......|+..|+|||.+..     ..++.++|||||||+||+|+++   
T Consensus       168 ------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p  217 (275)
T cd06608         168 ------------------------------GRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPP  217 (275)
T ss_pred             ------------------------------hhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCC
Confidence                                          00013457888999998854     3478899999999999999986   


Q ss_pred             CCcHHHHHHHHHhccccCCCCC--CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          529 FDSERALAAAMSDLRDRILPPS--FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      |............... ..+..  ....+..+.+|+.+||.+||.+|||+.++++|||+
T Consensus       218 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~~~~  275 (275)
T cd06608         218 LCDMHPMRALFKIPRN-PPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLEHPFI  275 (275)
T ss_pred             ccccchHHHHHHhhcc-CCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhcCCCC
Confidence            4332222233332222 11111  11245678899999999999999999999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.94  E-value=1.8e-26  Score=256.52  Aligned_cols=244  Identities=18%  Similarity=0.171  Sum_probs=170.7

Q ss_pred             ccccceeeeCCCCCccccccccccccccc-cccCchh--------hHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFV-TTTMPSD--------AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .+|.|.||+|...+    .+..++.|.+. .......        ...-.++...+....|||++.++.........   
T Consensus        11 ~g~~~~vy~~~~~~----~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~---   83 (272)
T cd06629          11 KGTYGRVYLALNVT----TGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEYL---   83 (272)
T ss_pred             ccCceEEEEEeecC----CCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCce---
Confidence            34789999997632    24445554331 1111000        11123355667788899998765543322222   


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                   ..+|||+.|++|.+++...+ .++...++.++.||+.||.|||++|++||||||+||+++.++.+++
T Consensus        84 -------------~lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l  149 (272)
T cd06629          84 -------------SIFLEYVPGGSIGSCLRTYG-RFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKI  149 (272)
T ss_pred             -------------EEEEecCCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEE
Confidence                         23799999999999997764 5677789999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.......                                                                  
T Consensus       150 ~d~~~~~~~~~~~~------------------------------------------------------------------  163 (272)
T cd06629         150 SDFGISKKSDDIYD------------------------------------------------------------------  163 (272)
T ss_pred             eecccccccccccc------------------------------------------------------------------
Confidence            99998765321000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC--CCccccchhhhHHHHHHcCC
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV--CTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~--~t~~sDIwSLGvll~ell~~  528 (1092)
                                                         ........|+..|+|||.+....  ++.++|+|||||++|||+++
T Consensus       164 -----------------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g  208 (272)
T cd06629         164 -----------------------------------NDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAG  208 (272)
T ss_pred             -----------------------------------ccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhC
Confidence                                               00001345778899999988754  78999999999999999997


Q ss_pred             CCc---HHHHHHHHHhcc---ccCCCCC-CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          529 FDS---ERALAAAMSDLR---DRILPPS-FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       529 f~~---~~~~~~~~~~~~---~~~~p~~-~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ..+   ............   ...+++. ....+..+.+|+.+||.++|..||++.++|+||||
T Consensus       209 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~  272 (272)
T cd06629         209 RRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQHPFI  272 (272)
T ss_pred             CCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhCCCC
Confidence            332   222222222111   1122222 23446788999999999999999999999999996

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.94  E-value=1e-26  Score=257.45  Aligned_cols=239  Identities=17%  Similarity=0.168  Sum_probs=171.5

Q ss_pred             cccceeeeCCCCCcccccccccccccccccc-Cch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ++.|.||+|...    ..+..++.|...... ... .......+..++...+|||++.+.+........+          
T Consensus        13 g~~~~v~~~~~~----~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~----------   78 (267)
T cd08228          13 GQFSEVYRATCL----LDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELN----------   78 (267)
T ss_pred             CCCeeEEEEEEe----CCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEE----------
Confidence            357999999752    224555555332211 111 2223345667788889999998766544322222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                            .+++|++|++|.+++..   ....++...++.++.||+.||+|||++||+|+||||+||+++.++.++++|||+
T Consensus        79 ------~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~  152 (267)
T cd08228          79 ------IVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGL  152 (267)
T ss_pred             ------EEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECcccc
Confidence                  37999999999999853   334577778999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++......                                                                        
T Consensus       153 ~~~~~~~~------------------------------------------------------------------------  160 (267)
T cd08228         153 GRFFSSKT------------------------------------------------------------------------  160 (267)
T ss_pred             ceeccchh------------------------------------------------------------------------
Confidence            76543100                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                     .......|+..|+|||.+.+..++.++|||||||++|||+++   |...
T Consensus       161 -------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~  209 (267)
T cd08228         161 -------------------------------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             -------------------------------HHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccc
Confidence                                           000133577889999999988899999999999999999986   3221


Q ss_pred             -HHHHHHHHhccccCCCCCCC-CCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          533 -RALAAAMSDLRDRILPPSFL-SENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       533 -~~~~~~~~~~~~~~~p~~~~-~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       .........+.....|+... ..+..+.+|+.+||+.+|++||++.++++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~  261 (267)
T cd08228         210 KMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQI  261 (267)
T ss_pred             cccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHH
Confidence             12223333333333444332 345778999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.94  E-value=1.1e-26  Score=259.59  Aligned_cols=245  Identities=18%  Similarity=0.146  Sum_probs=170.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhh-hhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAG-AMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||++...    ..+..++.|................+ ..+++...|||++.++.....+...+          
T Consensus        11 ~g~~g~v~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~----------   76 (283)
T cd06617          11 RGAYGVVDKMRHV----PTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVW----------   76 (283)
T ss_pred             ccCCeEEEEEEEc----CCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEE----------
Confidence            4578999998763    23556666544322111122222222 33466678999998766544332222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhc-CccccCCCCCCeEEccCCcEEEeccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQ-GVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~-gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                            .+|||++ ++|.+++..   .+..+++..++.++.||+.||+|||++ +++||||||+||+++.++.+|++|||
T Consensus        77 ------lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg  149 (283)
T cd06617          77 ------ICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFG  149 (283)
T ss_pred             ------EEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecc
Confidence                  2688887 688888754   234678889999999999999999997 99999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.+....                                                                       
T Consensus       150 ~~~~~~~~~-----------------------------------------------------------------------  158 (283)
T cd06617         150 ISGYLVDSV-----------------------------------------------------------------------  158 (283)
T ss_pred             ccccccccc-----------------------------------------------------------------------
Confidence            876543100                                                                       


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC----CCCCccccchhhhHHHHHHcCCCC
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG----GVCTTSSNIYSLGVLFFELFGRFD  530 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~----~~~t~~sDIwSLGvll~ell~~f~  530 (1092)
                                                       ..+...|+..|+|||.+.+    ..++.++|+|||||+||||+++..
T Consensus       159 ---------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~  205 (283)
T cd06617         159 ---------------------------------AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRF  205 (283)
T ss_pred             ---------------------------------ccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCC
Confidence                                             0012357788999998865    446899999999999999998632


Q ss_pred             cH---HHHHHHHHhccccCCCCC-CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          531 SE---RALAAAMSDLRDRILPPS-FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       531 ~~---~~~~~~~~~~~~~~~p~~-~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      +.   ......+........+.. ....++.+.+|+.+||..+|.+||++.++++||||....
T Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  268 (283)
T cd06617         206 PYDSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQHPFFELHL  268 (283)
T ss_pred             CCCccccCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCchhhhcc
Confidence            22   111122222222222211 123467889999999999999999999999999998753

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2.7e-24  Score=255.79  Aligned_cols=257  Identities=15%  Similarity=0.188  Sum_probs=197.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCC-------CCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          780 NVICSISFDRDEDHFAAAGVSKKIKIFEFNALFN-------DSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       780 ~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~-------~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      ..|+....++++..+++++.+..+..|+......       .... ..+....+|.+.|.+++|+|.++++|++|+.|++
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~-~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA-SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCC-CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            3455555666766677777777777777543110       0001 1123456899999999999954789999999999


Q ss_pred             EEEEECCCC-------ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccC
Q 001366          853 VKLWDACTG-------QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAH  924 (1092)
Q Consensus       853 V~IWD~~tg-------~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~  924 (1092)
                      |+|||+.++       ..+..+.+|...|.+++|+|..+++|++|+.|++|+|||+++++.+..+. |...|.+++|+|+
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd  179 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD  179 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence            999999765       35678899999999999999556799999999999999999999888887 6778999999999


Q ss_pred             CCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCe-EEEEEc-CCCEEEEEE----CCCeEEEEEcCCCCCCCCCCCce
Q 001366          925 SSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAV-SYVKFL-DSGTLVTAS----TDNKLKLWDLKRTSHTGPSTNAC  998 (1092)
Q Consensus       925 ~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V-~~v~fs-~~~~L~Sgs----~Dg~I~vWDl~~~~~~~~~~~~~  998 (1092)
                      +. +|++|+.|+.|++||+++++ .+..+.+|.+.+ ..+.|. +++.+++++    .|+.|++||+++..       .+
T Consensus       180 G~-lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-------~p  250 (493)
T PTZ00421        180 GS-LLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-------SP  250 (493)
T ss_pred             CC-EEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-------Cc
Confidence            85 89999999999999999876 456778887653 456676 556666654    47999999998532       23


Q ss_pred             eEEEcC-CCCCeEEEEEecCCCEEEEEe-cCCcEEEEeCCCCCceeeeec
Q 001366          999 SLTFSG-HTNEKNFVGLSTADGYIACGS-ESNEVYAYHRSLPMPITSYKF 1046 (1092)
Q Consensus       999 ~~~l~~-h~~~V~~v~~spdg~~lasgs-~Dg~I~Iwd~~~~~~i~~~~~ 1046 (1092)
                      +..... +...+....|++++.+|++|+ .|+.|++|++..+.++....+
T Consensus       251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~  300 (493)
T PTZ00421        251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY  300 (493)
T ss_pred             eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence            333332 334556678999999988877 599999999998887776554

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.94  E-value=2.1e-26  Score=254.22  Aligned_cols=243  Identities=15%  Similarity=0.118  Sum_probs=174.6

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.+.+.++  |.|.||+|...+     +..++.|+...... ........+...++..+|||++.+..........+  
T Consensus         7 ~y~~~~~ig~g~~~~vy~~~~~~-----~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~--   78 (261)
T cd05148           7 EFTLERKLGSGYFGEVWEGLWKN-----RVRVAIKILKSDDL-LKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVY--   78 (261)
T ss_pred             HHHHhhhhccCCCccEEEeEecC-----CCcEEEEeccccch-hhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeE--
Confidence            466555554  689999998855     34455555433222 11223344556677889999987655433222211  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                    ++|||++|++|.+++.. .+..++...++.++.||+.||.|||++||+||||||+||+++.++.+|
T Consensus        79 --------------lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~k  144 (261)
T cd05148          79 --------------IITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCK  144 (261)
T ss_pred             --------------EEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEE
Confidence                          38999999999999965 344578888999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||++........                                                                 
T Consensus       145 l~d~g~~~~~~~~~~-----------------------------------------------------------------  159 (261)
T cd05148         145 VADFGLARLIKEDVY-----------------------------------------------------------------  159 (261)
T ss_pred             EccccchhhcCCccc-----------------------------------------------------------------
Confidence            999998865431000                                                                 


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~  528 (1092)
                                                            ......++..|+|||.+.+..++.++|||||||++|+|++ +
T Consensus       160 --------------------------------------~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g  201 (261)
T cd05148         160 --------------------------------------LSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYG  201 (261)
T ss_pred             --------------------------------------cccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCC
Confidence                                                  0001223556999999988889999999999999999997 3


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                         |....... ....+.....++.....++.+.+++.+||..+|.+|||+.+|++
T Consensus       202 ~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~  256 (261)
T cd05148         202 QVPYPGMNNHE-VYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALRE  256 (261)
T ss_pred             CCCCCcCCHHH-HHHHHHhCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence               43322222 22222222233444566788999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=8.8e-27  Score=281.61  Aligned_cols=210  Identities=12%  Similarity=0.081  Sum_probs=150.0

Q ss_pred             hhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC----CCCCHHHHHHHH
Q 001366          260 AAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG----HKGKRIECLYIF  335 (1092)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~----~~~~~~~~~~i~  335 (1092)
                      .++..++...+||||+.+++........+                .+|+++ +++|.+++....    ......+++.|+
T Consensus       211 ~~Ei~il~~l~HpnIv~l~~~~~~~~~~~----------------lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~i~  273 (501)
T PHA03210        211 ENEILALGRLNHENILKIEEILRSEANTY----------------MITQKY-DFDLYSFMYDEAFDWKDRPLLKQTRAIM  273 (501)
T ss_pred             HHHHHHHHhCCCCCcCcEeEEEEECCeeE----------------EEEecc-ccCHHHHHhhccccccccccHHHHHHHH
Confidence            45566788889999998877655433333                256666 457777774432    123345788999


Q ss_pred             HHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhc
Q 001366          336 RQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQ  415 (1092)
Q Consensus       336 ~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  415 (1092)
                      .||+.||+|||++||+||||||+||||+.++.+||+|||+++.+.....                               
T Consensus       274 ~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~-------------------------------  322 (501)
T PHA03210        274 KQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKERE-------------------------------  322 (501)
T ss_pred             HHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEeCCCceecCcccc-------------------------------
Confidence            9999999999999999999999999999999999999999876431000                               


Q ss_pred             ccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCccccccccccccccccccc
Q 001366          416 KFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEE  495 (1092)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  495 (1092)
                                                                                             ......+||
T Consensus       323 -----------------------------------------------------------------------~~~~~~~gt  331 (501)
T PHA03210        323 -----------------------------------------------------------------------AFDYGWVGT  331 (501)
T ss_pred             -----------------------------------------------------------------------cccccccCC
Confidence                                                                                   000135789


Q ss_pred             ccccCcccccCCCCCccccchhhhHHHHHHcCC-CCc-----HHHHHHHHHhccc-----cCCCC---------------
Q 001366          496 KWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-FDS-----ERALAAAMSDLRD-----RILPP---------------  549 (1092)
Q Consensus       496 ~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-f~~-----~~~~~~~~~~~~~-----~~~p~---------------  549 (1092)
                      ..|+|||++.+..++.++|||||||+||||+++ +.+     .....+....+..     ..+|.               
T Consensus       332 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~  411 (501)
T PHA03210        332 VATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEID  411 (501)
T ss_pred             cCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcc
Confidence            999999999999999999999999999999974 111     1111111111110     00110               


Q ss_pred             --------C--CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          550 --------S--FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       550 --------~--~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                              .  .....+.+.+++.+||++||.+|||+.|+|.||||...
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~hp~f~~~  460 (501)
T PHA03210        412 HAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLALPLFSAE  460 (501)
T ss_pred             cCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhhChhhhcC
Confidence                    0  01234567788999999999999999999999999764

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.94  E-value=6.7e-27  Score=261.74  Aligned_cols=241  Identities=16%  Similarity=0.194  Sum_probs=171.2

Q ss_pred             cccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|.||++...+    .+..++.|++..... .........+..++...+|||++.+......+...+           
T Consensus        12 g~~~~vy~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   76 (286)
T cd07846          12 GSYGMVMKCKHKE----TGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLY-----------   76 (286)
T ss_pred             CCCeEEEEEEECC----CCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEE-----------
Confidence            5789999988632    234455554422111 112233345566778889999998665543222222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|||++|++|.+++.... .++..+++.++.||+.||+|||++||+|+||+|+||+++.++.++++|||+++.+
T Consensus        77 -----lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~  150 (286)
T cd07846          77 -----LVFEFVDHTVLDDLEKYPN-GLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTL  150 (286)
T ss_pred             -----EEEecCCccHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeec
Confidence                 3899999999998876543 4788899999999999999999999999999999999999999999999988654


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       151 ~~~~----------------------------------------------------------------------------  154 (286)
T cd07846         151 AAPG----------------------------------------------------------------------------  154 (286)
T ss_pred             cCCc----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                 ...+...++.+|+|||.+.+ ..++.++|||||||++|||+++   |......
T Consensus       155 ---------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~  207 (286)
T cd07846         155 ---------------------------EVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDI  207 (286)
T ss_pred             ---------------------------cccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchH
Confidence                                       00113467889999999876 4578999999999999999986   4332221


Q ss_pred             HHHHHhcc--------------------ccCCC---------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          536 AAAMSDLR--------------------DRILP---------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       536 ~~~~~~~~--------------------~~~~p---------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ........                    ....|         ..++..++.+.+|+.+||+++|.+||++.+|++||||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         208 DQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             HHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcCCCC
Confidence            11111000                    00000         1123456778999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.94  E-value=1.6e-26  Score=256.01  Aligned_cols=248  Identities=15%  Similarity=0.143  Sum_probs=175.5

Q ss_pred             hccccceeeeCCCCCcccccccccccccccc-ccCch----hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVT-TTMPS----DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGART  293 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (1092)
                      ..++.|.||++..    ...+..++.|+..- .....    ......++.+.++..+|||++.+++........      
T Consensus         9 g~g~~~~v~~~~~----~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~------   78 (268)
T cd06630           9 GTGAFSSCYQARD----VKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHF------   78 (268)
T ss_pred             cCcCceEEEEEEE----cCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeE------
Confidence            3457899998864    22245555544421 11111    123345567788888999999876654322221      


Q ss_pred             CCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC-cEEEec
Q 001366          294 GVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN-QVKYIG  372 (1092)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~-~vkl~D  372 (1092)
                                ..+|+|+.|++|.++|+..+ .+++..++.+++||+.||.|||++||+||||||+||+++..+ .+|++|
T Consensus        79 ----------~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~d  147 (268)
T cd06630          79 ----------NLFVEWMAGGSVSHLLSKYG-AFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIAD  147 (268)
T ss_pred             ----------EEEEeccCCCcHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEcc
Confidence                      24899999999999997654 467778999999999999999999999999999999998775 599999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||+++........                                                                   
T Consensus       148 fg~~~~~~~~~~~-------------------------------------------------------------------  160 (268)
T cd06630         148 FGAAARLAAKGTG-------------------------------------------------------------------  160 (268)
T ss_pred             ccccccccccccc-------------------------------------------------------------------
Confidence            9988664411000                                                                   


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---C
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---F  529 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f  529 (1092)
                                                      .........|+..|+|||.+.+..++.++|||||||++|+|+++   |
T Consensus       161 --------------------------------~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~  208 (268)
T cd06630         161 --------------------------------AGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPW  208 (268)
T ss_pred             --------------------------------CCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCC
Confidence                                            00000034578889999999988899999999999999999986   3


Q ss_pred             CcHH--HHHHHHHhc-cccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          530 DSER--ALAAAMSDL-RDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       530 ~~~~--~~~~~~~~~-~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      ....  .....+... .....++.....++.+.+|+.+||.++|.+||++.++++||||.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~~~~~~  268 (268)
T cd06630         209 NAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLKHPVFR  268 (268)
T ss_pred             CCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhcCcccC
Confidence            2111  112222222 12222333334578899999999999999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.94  E-value=1.7e-26  Score=259.51  Aligned_cols=244  Identities=16%  Similarity=0.112  Sum_probs=169.6

Q ss_pred             ccccceeeeCCCCCcccc-ccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKE-RRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|.||+|........ ....++.|+...............+...+....|||++..+.....+...+          
T Consensus        10 ~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~----------   79 (290)
T cd05045          10 EGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLL----------   79 (290)
T ss_pred             CcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcE----------
Confidence            457899999875321100 012344444433222222333445566778889999998766544333222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC-----------------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCC
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG-----------------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDL  355 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~-----------------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDL  355 (1092)
                            .+|||+.|++|.++|....                       ..++...++.++.||+.||.|||++||+||||
T Consensus        80 ------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~di  153 (290)
T cd05045          80 ------LIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDL  153 (290)
T ss_pred             ------EEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhh
Confidence                  3799999999999986421                       23667788999999999999999999999999


Q ss_pred             CCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccC
Q 001366          356 KPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYG  435 (1092)
Q Consensus       356 KP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (1092)
                      ||+||+++.++.+|++|||+++.+......                                                  
T Consensus       154 kp~nill~~~~~~kl~dfg~~~~~~~~~~~--------------------------------------------------  183 (290)
T cd05045         154 AARNVLVAEGRKMKISDFGLSRDVYEEDSY--------------------------------------------------  183 (290)
T ss_pred             hhheEEEcCCCcEEeccccccccccCccch--------------------------------------------------
Confidence            999999999999999999988764310000                                                  


Q ss_pred             CcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccc
Q 001366          436 NKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNI  515 (1092)
Q Consensus       436 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDI  515 (1092)
                                                                         .......++..|+|||.+.+..++.++||
T Consensus       184 ---------------------------------------------------~~~~~~~~~~~y~apE~~~~~~~~~~~Di  212 (290)
T cd05045         184 ---------------------------------------------------VKRSKGRIPVKWMAIESLFDHIYTTQSDV  212 (290)
T ss_pred             ---------------------------------------------------hcccCCCCCccccCHHHHccCCcchHhHH
Confidence                                                               00001234556999999988889999999


Q ss_pred             hhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          516 YSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       516 wSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      |||||++|||++ +   |.+... ......+.....++.....++.+.+|+.+||+++|.+||++.+++.
T Consensus       213 ~slG~~l~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~  281 (290)
T cd05045         213 WSFGVLLWEIVTLGGNPYPGIAP-ERLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFADISK  281 (290)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCH-HHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence            999999999997 4   433222 2222222222223333455788999999999999999999999976

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.94  E-value=1.2e-26  Score=266.46  Aligned_cols=257  Identities=17%  Similarity=0.225  Sum_probs=176.2

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|+||++....    .+..++.|...... .........++..++...+|||++.+.+........     ..-   
T Consensus        15 ~g~~g~v~~~~~~~----~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~-----~~~---   82 (334)
T cd07855          15 SGAYGVVCSAIDTR----SGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGAD-----FKD---   82 (334)
T ss_pred             cCCCeEEEEEEEcC----CCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCC-----Cce---
Confidence            35789999997632    24455555443221 112223344566778888999999765532211100     000   


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                          .-++|+|+. ++|.+++...+ .++..+++.++.||+.||.|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        83 ----~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~  156 (334)
T cd07855          83 ----VYVVMDLME-SDLHHIIHSDQ-PLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARG  156 (334)
T ss_pred             ----EEEEEehhh-hhHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEeccccccee
Confidence                114788886 58999997654 478889999999999999999999999999999999999999999999998876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ......                                                                          
T Consensus       157 ~~~~~~--------------------------------------------------------------------------  162 (334)
T cd07855         157 LSSSPT--------------------------------------------------------------------------  162 (334)
T ss_pred             ecccCc--------------------------------------------------------------------------
Confidence            431000                                                                          


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                               .........+|+.+|+|||.+.+ ..++.++|||||||++|||+++   |.+...
T Consensus       163 -------------------------~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~  217 (334)
T cd07855         163 -------------------------EHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNY  217 (334)
T ss_pred             -------------------------CCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCCh
Confidence                                     00001124578899999999866 5689999999999999999986   433221


Q ss_pred             HHHHH--------------------------HhccccCC---CCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAAM--------------------------SDLRDRIL---PPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~~--------------------------~~~~~~~~---p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .....                          ........   ...+...++++.+|+.+||+.+|.+||++.+++.||||
T Consensus       218 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~  297 (334)
T cd07855         218 VHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFL  297 (334)
T ss_pred             HHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhh
Confidence            11110                          00000000   00123457889999999999999999999999999999


Q ss_pred             hhhhccch
Q 001366          586 NEFQEVCA  593 (1092)
Q Consensus       586 ~~~~~~~~  593 (1092)
                      ...+....
T Consensus       298 ~~~~~~~~  305 (334)
T cd07855         298 AQYHDPDD  305 (334)
T ss_pred             hhccCCcc
Confidence            87766554

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.94  E-value=1.8e-26  Score=254.78  Aligned_cols=235  Identities=17%  Similarity=0.112  Sum_probs=168.3

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|.||+|...+     +..++.|.......  ....-..+..++...+|+|++.+..........+            
T Consensus        17 g~~g~v~~~~~~~-----~~~v~iK~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~------------   77 (261)
T cd05072          17 GQFGEVWMGYYNN-----STKVAVKTLKPGTM--SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIY------------   77 (261)
T ss_pred             cCCceEEEEEecC-----CceEEEEEccCCch--hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcE------------
Confidence            4789999998654     23344443322111  1223344556677889999998655533222222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                          .+|+|+.|++|.++++.. +..++...++.++.||+.||+|||++|++||||||+||+++.++.+|++|||+++..
T Consensus        78 ----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~  153 (261)
T cd05072          78 ----IITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVI  153 (261)
T ss_pred             ----EEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceec
Confidence                379999999999999653 445777788999999999999999999999999999999999999999999988764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      .+...                                                                           
T Consensus       154 ~~~~~---------------------------------------------------------------------------  158 (261)
T cd05072         154 EDNEY---------------------------------------------------------------------------  158 (261)
T ss_pred             CCCce---------------------------------------------------------------------------
Confidence            31000                                                                           


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                 .......++..|+|||.+.+..++.++|||||||++|||++ +   |......
T Consensus       159 ---------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~  211 (261)
T cd05072         159 ---------------------------TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS  211 (261)
T ss_pred             ---------------------------eccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHH
Confidence                                       00002234567999999998889999999999999999997 4   4332222


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                       .....+.....++.....+.++.+|+.+||+++|++||++.++++
T Consensus       212 -~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  256 (261)
T cd05072         212 -DVMSALQRGYRMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQS  256 (261)
T ss_pred             -HHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence             222222322333444556778899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.94  E-value=1.6e-26  Score=262.07  Aligned_cols=252  Identities=16%  Similarity=0.150  Sum_probs=171.8

Q ss_pred             hHHHhhhc--cccceeeeCCCCCcc---ccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAF---KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  286 (1092)
                      .|.+.+.+  +|.|.||++...+.-   +.....++.|++..............+..++... +||+++.+......+..
T Consensus        19 ~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~   98 (307)
T cd05098          19 RLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP   98 (307)
T ss_pred             HeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCc
Confidence            35554444  367999988642210   1112234455443322222222333344455555 79999987665443332


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCcc
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVT  351 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIv  351 (1092)
                      .+                ++|||+.+++|.++|....               ..++..+++.++.||+.||+|||++||+
T Consensus        99 ~~----------------lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~  162 (307)
T cd05098          99 LY----------------VIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCI  162 (307)
T ss_pred             eE----------------EEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcc
Confidence            22                3899999999999997642               2466778999999999999999999999


Q ss_pred             ccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccccc
Q 001366          352 FLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFP  431 (1092)
Q Consensus       352 HrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (1092)
                      ||||||+||+++.++.+|++|||+++........                                              
T Consensus       163 H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~----------------------------------------------  196 (307)
T cd05098         163 HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY----------------------------------------------  196 (307)
T ss_pred             cccccHHheEEcCCCcEEECCCcccccccccchh----------------------------------------------
Confidence            9999999999999999999999988654310000                                              


Q ss_pred             CccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCc
Q 001366          432 SKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTT  511 (1092)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~  511 (1092)
                                                                             ...+...++..|+|||.+.+..++.
T Consensus       197 -------------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~  221 (307)
T cd05098         197 -------------------------------------------------------KKTTNGRLPVKWMAPEALFDRIYTH  221 (307)
T ss_pred             -------------------------------------------------------hccccCCCccceeChHHhccCCCCc
Confidence                                                                   0000112345699999999988999


Q ss_pred             cccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          512 SSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       512 ~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ++|||||||++|||++ +   |... ........+.....++.....++++.+|+.+||+.+|.+||++.++++.
T Consensus       222 ~~DvwslG~~l~el~~~g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~  295 (307)
T cd05098         222 QSDVWSFGVLLWEIFTLGGSPYPGV-PVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  295 (307)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCcC-CHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence            9999999999999997 3   3222 2223333333333333334557888999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.94  E-value=8.3e-27  Score=260.70  Aligned_cols=242  Identities=14%  Similarity=0.175  Sum_probs=170.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|.||+|....    .+..++.|...-............+..++...+|||++.+..........+           
T Consensus        10 ~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   74 (284)
T cd07836          10 EGTYATVYKGRNRT----TGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLM-----------   74 (284)
T ss_pred             cCCceEEEEEEECC----CCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEE-----------
Confidence            34789999998732    244455544322222222334445667788889999988766544332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARG--HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~--~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                           ++|||++| +|.+++...+  ..++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++
T Consensus        75 -----lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~  148 (284)
T cd07836          75 -----LVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLAR  148 (284)
T ss_pred             -----EEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhh
Confidence                 37999986 8999987654  457888999999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       149 ~~~~~~--------------------------------------------------------------------------  154 (284)
T cd07836         149 AFGIPV--------------------------------------------------------------------------  154 (284)
T ss_pred             hhcCCc--------------------------------------------------------------------------
Confidence            533100                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCCC---CcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGRF---DSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~f---~~~~  533 (1092)
                                                   .......+|.+|++||.+.+ ..++.++|||||||++|||+++.   ....
T Consensus       155 -----------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~  205 (284)
T cd07836         155 -----------------------------NTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTN  205 (284)
T ss_pred             -----------------------------cccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                         00013356888999999876 45789999999999999999873   2222


Q ss_pred             HHHHHHHhc--------------cc-----cCCCC--------CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          534 ALAAAMSDL--------------RD-----RILPP--------SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       534 ~~~~~~~~~--------------~~-----~~~p~--------~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .........              ..     ...|.        .++..++.+.+++.+||+.+|.+||++.++++||||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         206 NEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPWF  284 (284)
T ss_pred             cHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence            111111110              00     00010        012346778899999999999999999999999997

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.94  E-value=1.7e-26  Score=253.77  Aligned_cols=241  Identities=19%  Similarity=0.192  Sum_probs=174.0

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||++...+    .+..++.|........ .....-..+...++..+|||++.+......+...+          
T Consensus        10 ~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~----------   75 (256)
T cd08220          10 RGAFGIVHLCRRKA----DQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALM----------   75 (256)
T ss_pred             ccCceEEEEEEEcC----CCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEE----------
Confidence            34679999877532    2444555444322222 22233344556777889999887665433222222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC-cEEEeccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN-QVKYIGPIIQ  376 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~-~vkl~Dfg~~  376 (1092)
                            .+|||++|++|.+++... +..++...++.++.|++.+|+|||++||+|+||||+||+++.++ .+|++|||++
T Consensus        76 ------lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~  149 (256)
T cd08220          76 ------IVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGIS  149 (256)
T ss_pred             ------EEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCc
Confidence                  389999999999999764 44578888999999999999999999999999999999998654 5799999988


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +......                                                                         
T Consensus       150 ~~~~~~~-------------------------------------------------------------------------  156 (256)
T cd08220         150 KILSSKS-------------------------------------------------------------------------  156 (256)
T ss_pred             eecCCCc-------------------------------------------------------------------------
Confidence            6643100                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                     ......|+..|+|||.+.+..++.++|+|||||++|+|+++   |....
T Consensus       157 -------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~  205 (256)
T cd08220         157 -------------------------------KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAAN  205 (256)
T ss_pred             -------------------------------cccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCc
Confidence                                           00023577889999999988899999999999999999985   54433


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ........... ..++.....++.+.+|+.+||+++|.+|||+.|+++||||
T Consensus       206 ~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~p~~  256 (256)
T cd08220         206 LPALVLKIMSG-TFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQPIC  256 (256)
T ss_pred             hHHHHHHHHhc-CCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhhCCCC
Confidence            33333333322 2222233457889999999999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.94  E-value=2.2e-26  Score=257.64  Aligned_cols=245  Identities=17%  Similarity=0.064  Sum_probs=165.5

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|+||++...-.....+..++.|+..............++...+....|||++.+...........            
T Consensus        15 g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~------------   82 (283)
T cd05080          15 GHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKG------------   82 (283)
T ss_pred             CCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCce------------
Confidence            46799977543111111244455555433222222223345566788889999998655432211100            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                        .-.+|||+.|++|.+++...  .++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++.+.
T Consensus        83 --~~lv~e~~~~~~l~~~~~~~--~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  158 (283)
T cd05080          83 --LQLIMEYVPLGSLRDYLPKH--KLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  158 (283)
T ss_pred             --EEEEecCCCCCCHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccC
Confidence              11379999999999999764  47888999999999999999999999999999999999999999999999987643


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      .....                                                                           
T Consensus       159 ~~~~~---------------------------------------------------------------------------  163 (283)
T cd05080         159 EGHEY---------------------------------------------------------------------------  163 (283)
T ss_pred             Ccchh---------------------------------------------------------------------------
Confidence            10000                                                                           


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHH---HHH-
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSER---ALA-  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~---~~~-  536 (1092)
                                               ........++..|+|||.+.+..++.++|||||||++|||+++..+..   ... 
T Consensus       164 -------------------------~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~  218 (283)
T cd05080         164 -------------------------YRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFE  218 (283)
T ss_pred             -------------------------hccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhh
Confidence                                     000001223456999999998889999999999999999998632211   000 


Q ss_pred             HHH-------------HhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          537 AAM-------------SDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       537 ~~~-------------~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ..+             ..+.....++.....++.+.+|+..||.++|++||++.++++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~  276 (283)
T cd05080         219 EMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIP  276 (283)
T ss_pred             hhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence            000             001111112222344678999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.94  E-value=1.7e-26  Score=270.99  Aligned_cols=255  Identities=12%  Similarity=0.109  Sum_probs=176.2

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccCC-CCCCCccccceecCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNA-SPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  286 (1092)
                      +.+|.+...++  +.|.||++..... .......++.|+..............++.+++.... |||++.++.....+..
T Consensus        36 ~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~  115 (401)
T cd05107          36 RDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGP  115 (401)
T ss_pred             HHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCC
Confidence            34555544444  6899999975321 112234566665543222222223445666666665 9999987766544333


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC-------------------------------------------
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-------------------------------------------  323 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-------------------------------------------  323 (1092)
                      .+                .+||||.||+|.++|...+                                           
T Consensus       116 ~~----------------iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (401)
T cd05107         116 IY----------------IITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYM  179 (401)
T ss_pred             cE----------------EEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCcccc
Confidence            22                3899999999999996532                                           


Q ss_pred             ------------------------------------------------------CCCCHHHHHHHHHHHHHHHHHhhhcC
Q 001366          324 ------------------------------------------------------HKGKRIECLYIFRQIVALVDYHHTQG  349 (1092)
Q Consensus       324 ------------------------------------------------------~~~~~~~~~~i~~qil~~l~~lHs~g  349 (1092)
                                                                            ..++...++.|+.||+.||+|||++|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~  259 (401)
T cd05107         180 DMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKN  259 (401)
T ss_pred             ccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence                                                                  12445567889999999999999999


Q ss_pred             ccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccc
Q 001366          350 VTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSL  429 (1092)
Q Consensus       350 IvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (1092)
                      |+||||||+|||++..+.+|++|||+++.+.....                                             
T Consensus       260 ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~---------------------------------------------  294 (401)
T cd05107         260 CVHRDLAARNVLICEGKLVKICDFGLARDIMRDSN---------------------------------------------  294 (401)
T ss_pred             cCcccCCcceEEEeCCCEEEEEecCcceecccccc---------------------------------------------
Confidence            99999999999999999999999999876431000                                             


Q ss_pred             ccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC
Q 001366          430 FPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC  509 (1092)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~  509 (1092)
                                                                              ........++..|+|||.+.+..+
T Consensus       295 --------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~  318 (401)
T cd05107         295 --------------------------------------------------------YISKGSTFLPLKWMAPESIFNNLY  318 (401)
T ss_pred             --------------------------------------------------------cccCCCcCCCCceeChHHhcCCCC
Confidence                                                                    000012346778999999998889


Q ss_pred             CccccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          510 TTSSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       510 t~~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      +.++|||||||+||||++ +   |............+.....++.....++++.+|+.+||+++|.+||++++|++.
T Consensus       319 ~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~  395 (401)
T cd05107         319 TTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHL  395 (401)
T ss_pred             CcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            999999999999999996 3   432222222222222222223333457889999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.94  E-value=1.4e-26  Score=260.41  Aligned_cols=240  Identities=15%  Similarity=0.099  Sum_probs=176.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...+    .++.++.|+......  .........+..++....|||++.+++........+         
T Consensus        11 ~g~~~~vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~---------   77 (290)
T cd05580          11 TGSFGRVMLVRHKG----SGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLY---------   77 (290)
T ss_pred             cCCCeEEEEEEEcC----CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEE---------
Confidence            35789999988743    244555554422111  112223344556677888999998766544322222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+|||+.|++|.+++...+ .++...++.++.||+.||+|||++||+|+||||+||+++.++.+|++|||+++
T Consensus        78 -------~v~e~~~~~~L~~~~~~~~-~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~  149 (290)
T cd05580          78 -------LVMEYVPGGELFSHLRKSG-RFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAK  149 (290)
T ss_pred             -------EEEecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCcc
Confidence                   3899999999999997764 56777899999999999999999999999999999999999999999999876


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .....                                                                           
T Consensus       150 ~~~~~---------------------------------------------------------------------------  154 (290)
T cd05580         150 RVKGR---------------------------------------------------------------------------  154 (290)
T ss_pred             ccCCC---------------------------------------------------------------------------
Confidence            53310                                                                           


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                     .....|++.|+|||.+.+..++.++|||||||++|+|+++   |.....
T Consensus       155 -------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  203 (290)
T cd05580         155 -------------------------------TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNP  203 (290)
T ss_pred             -------------------------------CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH
Confidence                                           0033578889999999888899999999999999999986   333332


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      ...........  ++.....++.+.+++.+||..+|.+|+     +++|+++||||...
T Consensus       204 ~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~  260 (290)
T cd05580         204 IQIYEKILEGK--VRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGI  260 (290)
T ss_pred             HHHHHHHhcCC--ccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHHcCcccccC
Confidence            22222222211  112223478899999999999999999     99999999999764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-27  Score=261.89  Aligned_cols=180  Identities=18%  Similarity=0.271  Sum_probs=143.7

Q ss_pred             cccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccc
Q 001366          305 RQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESA  383 (1092)
Q Consensus       305 ~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~  383 (1092)
                      .+|..+.||+|.=.|-..| ..+++..++.|+.+|+.||++||+.+||.|||||+||||+..|+|+|.|+|||-++.+  
T Consensus       262 lVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~--  339 (591)
T KOG0986|consen  262 LVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPE--  339 (591)
T ss_pred             EEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCC--
Confidence            3788999999998885543 5688889999999999999999999999999999999999999999999999987652  


Q ss_pred             cCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccc
Q 001366          384 SLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHT  463 (1092)
Q Consensus       384 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  463 (1092)
                                                                                                      
T Consensus       340 --------------------------------------------------------------------------------  339 (591)
T KOG0986|consen  340 --------------------------------------------------------------------------------  339 (591)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHHHHHHHHH--h
Q 001366          464 NAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMS--D  541 (1092)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~~~~~~~~--~  541 (1092)
                                            .......+||..|||||++.++.|+++.|.|||||+||||+.|-.++..+....+  .
T Consensus       340 ----------------------g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eE  397 (591)
T KOG0986|consen  340 ----------------------GKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREE  397 (591)
T ss_pred             ----------------------CCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHH
Confidence                                  0112256999999999999999999999999999999999986444333222211  1


Q ss_pred             ccccCC--CCCC-CCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          542 LRDRIL--PPSF-LSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       542 ~~~~~~--p~~~-~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      +.++++  +..+ ...+++..+||..+|++||++|..     ++++.+||||...
T Consensus       398 vdrr~~~~~~ey~~kFS~eakslc~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~l  452 (591)
T KOG0986|consen  398 VDRRTLEDPEEYSDKFSEEAKSLCEGLLTKDPEKRLGCRGEGAQEVKEHPFFKDL  452 (591)
T ss_pred             HHHHHhcchhhcccccCHHHHHHHHHHHccCHHHhccCCCcCcchhhhCcccccC
Confidence            112211  1111 234788999999999999999964     5799999999874

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.94  E-value=2.4e-26  Score=254.57  Aligned_cols=247  Identities=15%  Similarity=0.161  Sum_probs=174.3

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC-c-hhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-P-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      .+|.+.+.++  +.|.||++...    ..+..++.|....... . ........+..++....|||++.++.....+...
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~----~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~   77 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCL----LDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNEL   77 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeec----CCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeE
Confidence            4566666554  68999999852    1244455543322111 1 1112333455677788999999866554332222


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                      +                .+|+|+.|++|.++++.   ....++...++.++.||+.||.|||++||+|+||||+||+++.
T Consensus        78 ~----------------~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~  141 (267)
T cd08229          78 N----------------IVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITA  141 (267)
T ss_pred             E----------------EEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcC
Confidence            2                37999999999999864   2345777789999999999999999999999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.++++|||++.......                                                             
T Consensus       142 ~~~~~l~dfg~~~~~~~~~-------------------------------------------------------------  160 (267)
T cd08229         142 TGVVKLGDLGLGRFFSSKT-------------------------------------------------------------  160 (267)
T ss_pred             CCCEEECcchhhhccccCC-------------------------------------------------------------
Confidence            9999999999876533100                                                             


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~e  524 (1092)
                                                                .......|+..|+|||.+.+..++.++|+|||||++||
T Consensus       161 ------------------------------------------~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~  198 (267)
T cd08229         161 ------------------------------------------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYE  198 (267)
T ss_pred             ------------------------------------------cccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHH
Confidence                                                      00013457888999999998889999999999999999


Q ss_pred             HcCCCCc---H-HHHHHHHHhccccCCCCCC-CCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          525 LFGRFDS---E-RALAAAMSDLRDRILPPSF-LSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       525 ll~~f~~---~-~~~~~~~~~~~~~~~p~~~-~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      |+++..+   . .........+.....++.. ...++.+.+|+.+||+.+|.+|||+.+|++
T Consensus       199 l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~  260 (267)
T cd08229         199 MAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYD  260 (267)
T ss_pred             HHhCCCCcccccchHHHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHHH
Confidence            9986322   1 1222222333322233222 235678999999999999999999998876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.94  E-value=1.3e-26  Score=258.76  Aligned_cols=244  Identities=16%  Similarity=0.204  Sum_probs=174.5

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++....    .+..++.|+......  .........+..++...+||+++........+...+         
T Consensus         3 ~g~~g~vy~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~---------   69 (277)
T cd05577           3 KGGFGEVCACQVKA----TGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLC---------   69 (277)
T ss_pred             CCCceeEEEEEEcC----CCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEE---------
Confidence            46789999986532    244555554422111  111222234666788888999987655543322222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                             ++|+|++|++|.++|...+ ..++..+++.++.||+.||.|||++||+||||||+||+++.++.+|++|||++
T Consensus        70 -------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~  142 (277)
T cd05577          70 -------LVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLA  142 (277)
T ss_pred             -------EEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcch
Confidence                   3899999999999996654 35788889999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       143 ~~~~~~--------------------------------------------------------------------------  148 (277)
T cd05577         143 VELKGG--------------------------------------------------------------------------  148 (277)
T ss_pred             hhhccC--------------------------------------------------------------------------
Confidence            653310                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    .......++..|+|||.+.+..++.++|||||||++|+|+++   |....
T Consensus       149 ------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  198 (277)
T cd05577         149 ------------------------------KKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRK  198 (277)
T ss_pred             ------------------------------CccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCc
Confidence                                          000023466779999999888899999999999999999986   32221


Q ss_pred             ---HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          534 ---ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       534 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                         ........... ...+.....++.+.+||.+||+.+|.+||     ++.+++.||||...
T Consensus       199 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~h~~~~~~  260 (277)
T cd05577         199 EKVEKEELKRRTLE-MAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDL  260 (277)
T ss_pred             ccccHHHHHhcccc-ccccCCccCCHHHHHHHHHHccCChhHccCCCcccHHHHHhChhhhcC
Confidence               11111111111 11122234578899999999999999999     88889999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.94  E-value=1.6e-26  Score=254.43  Aligned_cols=234  Identities=14%  Similarity=0.100  Sum_probs=163.6

Q ss_pred             hccccceeeeCCCCCcc------ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCcc
Q 001366          219 TLKGKGIVCRGPPLNAF------KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGAR  292 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (1092)
                      ..+|.|.||+|...+.-      +.....++.|+.....  .....-.++..+++...|||++.++..... ...     
T Consensus         4 g~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~-----   75 (259)
T cd05037           4 GQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH--RDSLAFFETASLMSQLSHKHLVKLYGVCVR-DEN-----   75 (259)
T ss_pred             cccccceEEEEEEeccCCccccCCccceeeeeeccccch--hhHHHHHHHHHHHHcCCCcchhheeeEEec-CCc-----
Confidence            45678999999885422      1111123333332211  112333445567788899999987655433 111     


Q ss_pred             CCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC------
Q 001366          293 TGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN------  366 (1092)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~------  366 (1092)
                                 ..+|||+.|++|.+++......++...++.+++||+.||+|||++||+||||||+||+++..+      
T Consensus        76 -----------~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~  144 (259)
T cd05037          76 -----------IMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYV  144 (259)
T ss_pred             -----------EEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCc
Confidence                       138999999999999987665678889999999999999999999999999999999999887      


Q ss_pred             -cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          367 -QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       367 -~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                       .+|++|||+++.....                                                               
T Consensus       145 ~~~kl~Dfg~a~~~~~~---------------------------------------------------------------  161 (259)
T cd05037         145 PFIKLSDPGIPITVLSR---------------------------------------------------------------  161 (259)
T ss_pred             eeEEeCCCCcccccccc---------------------------------------------------------------
Confidence             7999999988654310                                                               


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC--CCCccccchhhhHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG--VCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~--~~t~~sDIwSLGvll~  523 (1092)
                                                                  ....++..|+|||.+.+.  .++.++|||||||++|
T Consensus       162 --------------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~  197 (259)
T cd05037         162 --------------------------------------------EERVERIPWIAPECIRNGQASLTIAADKWSFGTTLL  197 (259)
T ss_pred             --------------------------------------------cccccCCCccChhhhcCCCCCcchhhHHHHHHHHHH
Confidence                                                        012345569999999886  7899999999999999


Q ss_pred             HHcCC-CCcHHH--HHHHHHhc-cccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          524 ELFGR-FDSERA--LAAAMSDL-RDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       524 ell~~-f~~~~~--~~~~~~~~-~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ||+++ ..+...  ........ .....|.   .....+.+|+.+||..+|.+||++.++++
T Consensus       198 ~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~il~  256 (259)
T cd05037         198 EICSNGEEPLSTLSSSEKERFYQDQHRLPM---PDCAELANLINQCWTYDPTKRPSFRAILR  256 (259)
T ss_pred             HHHhCCCCCcccCCchhHHHHHhcCCCCCC---CCchHHHHHHHHHhccChhhCCCHHHHHH
Confidence            99973 221111  11111111 1111111   12378889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.94  E-value=1.9e-26  Score=257.34  Aligned_cols=197  Identities=16%  Similarity=0.137  Sum_probs=144.5

Q ss_pred             hhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHH
Q 001366          260 AAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIV  339 (1092)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil  339 (1092)
                      ..+..++....|||++.+......+...+                .+|||++|++|..++......++...++.++.||+
T Consensus        64 ~~~~~~~~~l~h~niv~~~~~~~~~~~~~----------------lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~  127 (274)
T cd05076          64 FETASLMSQVSHIHLAFVHGVCVRGSENI----------------MVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLA  127 (274)
T ss_pred             HHHHHHHhcCCCCCeeeEEEEEEeCCceE----------------EEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            34455677789999998776655433333                38999999999999976555677889999999999


Q ss_pred             HHHHHhhhcCccccCCCCCCeEEccCC-------cEEEecccccccccccccCCCCCCchhhhhccccccccccccccch
Q 001366          340 ALVDYHHTQGVTFLDLKPSSFKLLQSN-------QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASA  412 (1092)
Q Consensus       340 ~~l~~lHs~gIvHrDLKP~Nill~~~~-------~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  412 (1092)
                      .||+|||++||+||||||+||+++..+       .+|++|||++.....                               
T Consensus       128 ~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~-------------------------------  176 (274)
T cd05076         128 SALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALS-------------------------------  176 (274)
T ss_pred             HHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCcccccccc-------------------------------
Confidence            999999999999999999999997643       378888886643210                               


Q ss_pred             hhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccc
Q 001366          413 KKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQ  492 (1092)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (1092)
                                                                                                  ....
T Consensus       177 ----------------------------------------------------------------------------~~~~  180 (274)
T cd05076         177 ----------------------------------------------------------------------------REER  180 (274)
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0012


Q ss_pred             cccccccCcccccC-CCCCccccchhhhHHHHHHc-CC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccc
Q 001366          493 LEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELF-GR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLH  567 (1092)
Q Consensus       493 ~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell-~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~  567 (1092)
                      .++..|+|||.+.+ ..++.++|||||||++|||+ ++   |..................|+   ...+.+.+|+.+||+
T Consensus       181 ~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~cl~  257 (274)
T cd05076         181 VERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKERFYEKKHRLPE---PSCKELATLISQCLT  257 (274)
T ss_pred             ccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHHHHHHhccCCCC---CCChHHHHHHHHHcc
Confidence            35666999999876 56899999999999999995 33   322211111111111112222   235789999999999


Q ss_pred             cCCCCCCCHHHHhhh
Q 001366          568 PEPLSRPTTREILQS  582 (1092)
Q Consensus       568 ~dP~~Rpsa~eiL~~  582 (1092)
                      .+|++||++.+||++
T Consensus       258 ~~p~~Rps~~~il~~  272 (274)
T cd05076         258 YEPTQRPSFRTILRD  272 (274)
T ss_pred             cChhhCcCHHHHHHh
Confidence            999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.94  E-value=2.3e-26  Score=252.23  Aligned_cols=241  Identities=17%  Similarity=0.124  Sum_probs=170.0

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|.||++...+     +..++.|+...............+..+++...||+++.+..........+          
T Consensus         4 g~g~~g~v~~~~~~~-----~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~----------   68 (251)
T cd05041           4 GKGNFGDVYKGVLKG-----NTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIY----------   68 (251)
T ss_pred             ccCCCceEEEEEEeC-----CCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeE----------
Confidence            346789999998743     34444544433322222233445566788889999887665433222222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+|+|+.|++|.+++......++...++.++.|++.+|+|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        69 ------~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~  142 (251)
T cd05041          69 ------IVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRE  142 (251)
T ss_pred             ------EEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeecccccc
Confidence                  37999999999999977655677888999999999999999999999999999999999999999999998865


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .......                                                                         
T Consensus       143 ~~~~~~~-------------------------------------------------------------------------  149 (251)
T cd05041         143 EEGGIYT-------------------------------------------------------------------------  149 (251)
T ss_pred             ccCCcce-------------------------------------------------------------------------
Confidence            3310000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~  534 (1092)
                                          .      .  -....++..|+|||.+.+..++.++|||||||++|||++ +   |.....
T Consensus       150 --------------------~------~--~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~  201 (251)
T cd05041         150 --------------------V------S--DGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSN  201 (251)
T ss_pred             --------------------e------c--cccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCH
Confidence                                0      0  001112345999999998889999999999999999997 3   333222


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      . .....+.....++.....+..+.+|+.+||..+|.+||++.|+++.
T Consensus       202 ~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~  248 (251)
T cd05041         202 Q-QTRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNE  248 (251)
T ss_pred             H-HHHHHHhcCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHHH
Confidence            1 1222222222222233456788999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.94  E-value=5.9e-26  Score=257.52  Aligned_cols=246  Identities=14%  Similarity=0.095  Sum_probs=174.1

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchh--hHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD--AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.++  +.|.||+|....    .++.++.|..........  .....++..++...+|||++........+...+ 
T Consensus        17 y~~~~~lg~g~~g~vy~~~~~~----~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~-   91 (307)
T cd06607          17 FTDLREIGHGSFGAVYFARDVR----TNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAW-   91 (307)
T ss_pred             hhhheeecCCCCeEEEEEEEcC----CCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEE-
Confidence            44444333  579999997632    244555554432222222  223445666788889999998665544322222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     ++|||+. ++|.+++......+++.++..++.||+.||.|||++||+||||+|+||+++.++.+|
T Consensus        92 ---------------lv~e~~~-g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~k  155 (307)
T cd06607          92 ---------------LVMEYCL-GSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVK  155 (307)
T ss_pred             ---------------EEHHhhC-CCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEE
Confidence                           3788987 578888765555688889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++....                                                                    
T Consensus       156 L~dfg~~~~~~~--------------------------------------------------------------------  167 (307)
T cd06607         156 LADFGSASLVSP--------------------------------------------------------------------  167 (307)
T ss_pred             EeecCcceecCC--------------------------------------------------------------------
Confidence            999998754220                                                                    


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc---CCCCCccccchhhhHHHHHHc
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS---GGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~---~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                             .....|+..|+|||.+.   ...++.++|||||||++|||+
T Consensus       168 ---------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~  208 (307)
T cd06607         168 ---------------------------------------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA  208 (307)
T ss_pred             ---------------------------------------CCCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHH
Confidence                                                   00234677799999885   356889999999999999999


Q ss_pred             CCCC---cHHHHHHHHHhccccCCCCC-CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GRFD---SERALAAAMSDLRDRILPPS-FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~f~---~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ++..   ........... .....+.. ....+..+.+|+.+||.++|.+||++.+|+.||||...
T Consensus       209 tg~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  273 (307)
T cd06607         209 ERKPPLFNMNAMSALYHI-AQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRFVLRE  273 (307)
T ss_pred             cCCCCCCCccHHHHHHHH-hcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHhcChhhccc
Confidence            9732   22222222222 22121211 12246778999999999999999999999999999764

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.94  E-value=1.2e-26  Score=261.46  Aligned_cols=253  Identities=14%  Similarity=0.116  Sum_probs=179.1

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.++  +.|+||++....    .+..++.|...... .........+..++....|||++.+.+........+  
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~----~~~~v~iK~~~~~~-~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~--   92 (293)
T cd06647          20 KYTRFEKIGQGASGTVYTAIDVA----TGQEVAIKQMNLQQ-QPKKELIINEILVMRENKHPNIVNYLDSYLVGDELW--   92 (293)
T ss_pred             hceeeeEecCCCCeEEEEEEEcC----CCCEEEEEEecccc-chHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEE--
Confidence            455544444  679999997421    13344544432211 122233445556778889999987665433222222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    .++||++|++|.+++...  .++..+++.++.||+.||.|||++||+||||||+||+++.++.+|+
T Consensus        93 --------------lv~e~~~~~~L~~~~~~~--~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL  156 (293)
T cd06647          93 --------------VVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKL  156 (293)
T ss_pred             --------------EEEecCCCCcHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEE
Confidence                          379999999999999764  4677789999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||++.......                                                                   
T Consensus       157 ~dfg~~~~~~~~~-------------------------------------------------------------------  169 (293)
T cd06647         157 TDFGFCAQITPEQ-------------------------------------------------------------------  169 (293)
T ss_pred             ccCcceecccccc-------------------------------------------------------------------
Confidence            9999876533100                                                                   


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC--
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                          .......|++.|+|||.+.+..++.++|+|||||++|+|+++  
T Consensus       170 ------------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~  213 (293)
T cd06647         170 ------------------------------------SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEP  213 (293)
T ss_pred             ------------------------------------cccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence                                                000134578889999999888899999999999999999986  


Q ss_pred             -CCcHHHHHHHHHhccccCC-CCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhcc
Q 001366          529 -FDSERALAAAMSDLRDRIL-PPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEV  591 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~  591 (1092)
                       |.................. .+.....++.+.+|+.+||..+|.+||++.+++.|+||......
T Consensus       214 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h~~~~~~~~~  278 (293)
T cd06647         214 PYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHPFLKIAKPL  278 (293)
T ss_pred             CCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcCccc
Confidence             4333332222111111111 11122346778999999999999999999999999999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.94  E-value=2.9e-26  Score=260.91  Aligned_cols=244  Identities=16%  Similarity=0.142  Sum_probs=166.6

Q ss_pred             cccceeeeCCCCCcc---ccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCC
Q 001366          221 KGKGIVCRGPPLNAF---KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      +|.|.||++...+..   ......++.|+...............+..++... .|||++.++.....+...+        
T Consensus        23 G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~--------   94 (314)
T cd05099          23 GCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLY--------   94 (314)
T ss_pred             CCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceE--------
Confidence            468999998642110   1112334444443222222223334455566666 6999998766544322222        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeE
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFK  361 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nil  361 (1092)
                              .+|||+.|++|.++|....               ..++..+++.++.||+.||+|||++||+||||||+||+
T Consensus        95 --------lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nil  166 (314)
T cd05099          95 --------VIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVL  166 (314)
T ss_pred             --------EEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEE
Confidence                    3799999999999996532               24677788999999999999999999999999999999


Q ss_pred             EccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          362 LLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       362 l~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      ++.++.+|++|||+++........                                                        
T Consensus       167 l~~~~~~kL~Dfg~~~~~~~~~~~--------------------------------------------------------  190 (314)
T cd05099         167 VTEDNVMKIADFGLARGVHDIDYY--------------------------------------------------------  190 (314)
T ss_pred             EcCCCcEEEccccccccccccccc--------------------------------------------------------
Confidence            999999999999998764310000                                                        


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                                                                   .......++..|+|||.+.+..++.++|||||||+
T Consensus       191 ---------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~  225 (314)
T cd05099         191 ---------------------------------------------KKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGIL  225 (314)
T ss_pred             ---------------------------------------------cccccCCCCccccCHHHHccCCcCccchhhHHHHH
Confidence                                                         00001123356999999999899999999999999


Q ss_pred             HHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          522 FFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       522 l~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      +|||++ +   |..... ......+.....++.....+.++.+|+.+||..+|.+||++.++++.
T Consensus       226 l~el~~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~  289 (314)
T cd05099         226 MWEIFTLGGSPYPGIPV-EELFKLLREGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEA  289 (314)
T ss_pred             HHHHHhCCCCCCCCCCH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            999997 3   333221 12222222222222233456788999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=4.1e-26  Score=252.14  Aligned_cols=236  Identities=16%  Similarity=0.091  Sum_probs=168.5

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||+|...+     +..++.|.......  ....-.++...+...+|||++.+......+...+           
T Consensus        16 ~g~~~~v~~~~~~~-----~~~v~iK~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   77 (261)
T cd05068          16 AGQFGEVWEGLWNN-----TTPVAVKTLKPGTM--DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIY-----------   77 (261)
T ss_pred             ccCCccEEEEEecC-----CeEEEEEeeCCCcc--cHHHHHHHHHHHHHCCCCCccceeEEEecCCCee-----------
Confidence            35789999988644     23345544322221  1222334556777888999987665543322222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .+|||+.|++|.+++... +..++..++..++.||+.||.|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        78 -----lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~  152 (261)
T cd05068          78 -----IVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARV  152 (261)
T ss_pred             -----eeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEE
Confidence                 379999999999999654 35678889999999999999999999999999999999999999999999999877


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .......                                                                         
T Consensus       153 ~~~~~~~-------------------------------------------------------------------------  159 (261)
T cd05068         153 IKEDIYE-------------------------------------------------------------------------  159 (261)
T ss_pred             ccCCccc-------------------------------------------------------------------------
Confidence            5411000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~  534 (1092)
                                                   .......+..|+|||.+.+..++.++|||||||++|||++ +   |.+...
T Consensus       160 -----------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  210 (261)
T cd05068         160 -----------------------------AREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTN  210 (261)
T ss_pred             -----------------------------ccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH
Confidence                                         0000112346999999998889999999999999999997 4   433322


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      .. ....+.....++.....+..+.+++.+||+.+|.+||++.+|++
T Consensus       211 ~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~  256 (261)
T cd05068         211 AE-VLQQVDQGYRMPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQW  256 (261)
T ss_pred             HH-HHHHHHcCCCCCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence            22 22222222222333455788999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.94  E-value=2.5e-26  Score=255.07  Aligned_cols=244  Identities=15%  Similarity=0.097  Sum_probs=162.4

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..++.|+||+|...++..  ...++.+...............++...+...+|||++.++.........+          
T Consensus         4 g~G~fg~v~~~~~~~~~~--~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~----------   71 (269)
T cd05042           4 GNGWFGKVLLGEAHRGMS--KARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYL----------   71 (269)
T ss_pred             CccCCceEEEEEEecCCC--CeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceE----------
Confidence            346789999986533221  12233333222222222333345556677889999998776544322222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCC----CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGH----KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~----~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                            .+|||+.|++|.++|.....    ..+...++.++.||+.||+|||++||+||||||+|||++.++.+|++|||
T Consensus        72 ------lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg  145 (269)
T cd05042          72 ------LVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYG  145 (269)
T ss_pred             ------EEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccc
Confidence                  37999999999999966432    23556788999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++........                                                                     
T Consensus       146 ~~~~~~~~~~~---------------------------------------------------------------------  156 (269)
T cd05042         146 LALEQYPEDYY---------------------------------------------------------------------  156 (269)
T ss_pred             cccccccchhe---------------------------------------------------------------------
Confidence            87653210000                                                                     


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-------CCCCccccchhhhHHHHHHcC
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-------GVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-------~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                      .......++..|+|||++..       ..++.++|||||||++|||++
T Consensus       157 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~  204 (269)
T cd05042         157 --------------------------------ITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFT  204 (269)
T ss_pred             --------------------------------eccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHh
Confidence                                            00002345667999998743       456889999999999999997


Q ss_pred             -C---CCcHHHHHHHHHhcccc---CCCCC-CCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          528 -R---FDSERALAAAMSDLRDR---ILPPS-FLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       528 -~---f~~~~~~~~~~~~~~~~---~~p~~-~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       +   |............+...   ...+. ....++.+..++..|+ .||++||++.+|++-
T Consensus       205 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~  266 (269)
T cd05042         205 AADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHEL  266 (269)
T ss_pred             CCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cCcccccCHHHHHHH
Confidence             3   43333332222222221   11222 2234566778888888 599999999999863

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=8.1e-25  Score=260.63  Aligned_cols=272  Identities=21%  Similarity=0.292  Sum_probs=234.9

Q ss_pred             CCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccce
Q 001366          743 NPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPA  822 (1092)
Q Consensus       743 ~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~  822 (1092)
                      ..+.....+.|.++++|+........    ..+.+|.+.|.+++|..-+.+|++|+.|.+++|||..+       ..+..
T Consensus       217 ~~~~~~~~s~~~tl~~~~~~~~~~i~----~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-------g~C~~  285 (537)
T KOG0274|consen  217 HDGFFKSGSDDSTLHLWDLNNGYLIL----TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-------GECTH  285 (537)
T ss_pred             ecCeEEecCCCceeEEeecccceEEE----eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-------CcEEE
Confidence            34455677888999999865543322    23679999999999998888999999999999999765       34556


Q ss_pred             eeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 001366          823 VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN  902 (1092)
Q Consensus       823 ~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~  902 (1092)
                      ...+|.+.|.|+...+   ..+++||.|.+|++|++.++.++..+.+|..+|.+|..+   +..+++|+.|++|++||+.
T Consensus       286 ~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  286 SLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             EecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhh
Confidence            6778999999998875   488999999999999999999999999999999999996   5799999999999999999


Q ss_pred             CCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEE
Q 001366          903 EKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLK  981 (1092)
Q Consensus       903 ~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~  981 (1092)
                      +++++.++. |...|.++.+.+.  ..+++|+.|++|++||+++...++.++.+|...|..+.+ .+++|++++.|++|+
T Consensus       360 ~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~-~~~~Lvs~~aD~~Ik  436 (537)
T KOG0274|consen  360 TGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL-RDNFLVSSSADGTIK  436 (537)
T ss_pred             hceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc-ccceeEeccccccEE
Confidence            999999998 6788999988875  489999999999999999884567899999999987776 478999999999999


Q ss_pred             EEEcCCCCCCCCCCCceeEEEcC-CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeee
Q 001366          982 LWDLKRTSHTGPSTNACSLTFSG-HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSY 1044 (1092)
Q Consensus       982 vWDl~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~ 1044 (1092)
                      +||..        .+.++.++.+ |...|.++++.  ...+++++.|+++++||+.+++.+...
T Consensus       437 ~WD~~--------~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  437 LWDAE--------EGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             Eeecc--------cCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            99998        5678899988 67888888776  458999999999999999998877654

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.94  E-value=2.3e-26  Score=265.35  Aligned_cols=251  Identities=18%  Similarity=0.223  Sum_probs=175.0

Q ss_pred             ccccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||++...    ..+..++.|+.... ...........+..++...+|||++.+.+....+....     .    
T Consensus        25 ~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-----~----   91 (343)
T cd07880          25 SGAYGTVCSALDR----RTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD-----R----   91 (343)
T ss_pred             ecCCeEEEEEEEC----CCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc-----c----
Confidence            3467999998752    12444555543221 11112223446667788889999998766544332221     0    


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                       +...-.+|+|+ |++|.++++..  .++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        92 -~~~~~lv~e~~-~~~l~~~~~~~--~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~  167 (343)
T cd07880          92 -FHDFYLVMPFM-GTDLGKLMKHE--KLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQ  167 (343)
T ss_pred             -cceEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccccc
Confidence             01112478887 88999998753  577889999999999999999999999999999999999999999999998765


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ....                                                                            
T Consensus       168 ~~~~----------------------------------------------------------------------------  171 (343)
T cd07880         168 TDSE----------------------------------------------------------------------------  171 (343)
T ss_pred             cccC----------------------------------------------------------------------------
Confidence            3200                                                                            


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                    .....++++|+|||.+.+ ..++.++|+|||||++|+|+++   |.....
T Consensus       172 ------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~  221 (343)
T cd07880         172 ------------------------------MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDH  221 (343)
T ss_pred             ------------------------------ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence                                          002356888999999876 4588999999999999999986   333222


Q ss_pred             HHHHHHhccccC---------------------CC--------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAAMSDLRDRI---------------------LP--------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~~~~~~~~~---------------------~p--------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ............                     +|        ......++.+.+++.+||+.||.+|||+.+++.||||
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~  301 (343)
T cd07880         222 LDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYF  301 (343)
T ss_pred             HHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccH
Confidence            212111111000                     00        1123456778999999999999999999999999999


Q ss_pred             hhhhccch
Q 001366          586 NEFQEVCA  593 (1092)
Q Consensus       586 ~~~~~~~~  593 (1092)
                      ....+...
T Consensus       302 ~~~~~~~~  309 (343)
T cd07880         302 EEFHDPED  309 (343)
T ss_pred             hhhcCccc
Confidence            88755443

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.94  E-value=3.8e-26  Score=253.29  Aligned_cols=245  Identities=16%  Similarity=0.100  Sum_probs=169.7

Q ss_pred             ccccceeeeCCCCCcc--ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAF--KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|+||+|...+..  ......++.|.............-.++...+...+|||++.+......+...+         
T Consensus         5 ~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~---------   75 (269)
T cd05044           5 SGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQY---------   75 (269)
T ss_pred             cccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeE---------
Confidence            4578999999875422  11123344444322221223333445666788889999998665533222222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhc------CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC-----
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNAR------GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN-----  366 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~------~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~-----  366 (1092)
                             .+|+|+.|++|.++|...      ...++..+++.++.||+.||.|||++||+|+||||+||+++..+     
T Consensus        76 -------~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~  148 (269)
T cd05044          76 -------IIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADR  148 (269)
T ss_pred             -------EEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCc
Confidence                   379999999999999642      22366778999999999999999999999999999999999887     


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+|++|||+++........                                                             
T Consensus       149 ~~~l~dfg~~~~~~~~~~~-------------------------------------------------------------  167 (269)
T cd05044         149 VVKIGDFGLARDIYKSDYY-------------------------------------------------------------  167 (269)
T ss_pred             ceEECCccccccccccccc-------------------------------------------------------------
Confidence            8999999988764310000                                                             


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              .......++..|+|||.+.++.++.++|||||||++|||+
T Consensus       168 ----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ell  207 (269)
T cd05044         168 ----------------------------------------RKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEIL  207 (269)
T ss_pred             ----------------------------------------ccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHH
Confidence                                                    0000123456799999999999999999999999999999


Q ss_pred             C-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          527 G-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       527 ~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      + +   |....... ....+.....+......++.+.+|+.+||.++|.+||++.+|++.
T Consensus       208 t~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~  266 (269)
T cd05044         208 TLGQQPYPALNNQE-VLQHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEI  266 (269)
T ss_pred             HcCCCCCcccCHHH-HHHHHhcCCccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHH
Confidence            6 4   43322222 222222222222333456778899999999999999999998763

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.94  E-value=2.8e-26  Score=257.46  Aligned_cols=244  Identities=16%  Similarity=0.100  Sum_probs=169.2

Q ss_pred             ccccceeeeCCCCCccc-cccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFK-ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|+|.||++......+ ..+..++.|+............-..+..++....|||++.+......+...+          
T Consensus        15 ~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~----------   84 (288)
T cd05050          15 QGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMC----------   84 (288)
T ss_pred             ccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccE----------
Confidence            35789999987532111 1234555555433222222233334566778889999998665433222222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC---------------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCC
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG---------------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKP  357 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~---------------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP  357 (1092)
                            .+|||+.|++|.++|....                     ..++..+++.++.||+.||+|||++||+||||||
T Consensus        85 ------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p  158 (288)
T cd05050          85 ------LLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLAT  158 (288)
T ss_pred             ------EEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccH
Confidence                  3799999999999996432                     2356678899999999999999999999999999


Q ss_pred             CCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCc
Q 001366          358 SSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNK  437 (1092)
Q Consensus       358 ~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (1092)
                      +||+++.++.+|++|||+++.+......                                                    
T Consensus       159 ~nil~~~~~~~~l~dfg~~~~~~~~~~~----------------------------------------------------  186 (288)
T cd05050         159 RNCLVGENMVVKIADFGLSRNIYSADYY----------------------------------------------------  186 (288)
T ss_pred             hheEecCCCceEECccccceecccCccc----------------------------------------------------
Confidence            9999999999999999987654310000                                                    


Q ss_pred             ccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchh
Q 001366          438 IETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYS  517 (1092)
Q Consensus       438 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwS  517 (1092)
                                                                       ........+..|+|||.+.+..++.++||||
T Consensus       187 -------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s  217 (288)
T cd05050         187 -------------------------------------------------KASENDAIPIRWMPPESIFYNRYTTESDVWA  217 (288)
T ss_pred             -------------------------------------------------cccCCCccChhhcCHHHHhcCCCCchhHHHH
Confidence                                                             0000112345699999999889999999999


Q ss_pred             hhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          518 LGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       518 LGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      |||++|||++ +   |.+... ......+.....++.....++.+.+|+.+||..+|.+|||+.|+++
T Consensus       218 lG~il~el~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~  284 (288)
T cd05050         218 YGVVLWEIFSYGMQPYYGMAH-EEVIYYVRDGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINR  284 (288)
T ss_pred             HHHHHHHHHhCCCCCCCCCCH-HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence            9999999996 3   322222 2233333333333333445788999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.94  E-value=4.1e-26  Score=257.23  Aligned_cols=252  Identities=14%  Similarity=0.103  Sum_probs=170.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCc----------cccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccc
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNA----------FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTA  280 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (1092)
                      +|.+.+.++  |.|+||++...+.          .......++.|+............-.++...+...+|||++.+.+.
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~   85 (295)
T cd05097           6 QLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGV   85 (295)
T ss_pred             hCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEE
Confidence            455555544  7899998765320          0000112333433221111122233445667888899999987776


Q ss_pred             eecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC-----------CCCCHHHHHHHHHHHHHHHHHhhhcC
Q 001366          281 VVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-----------HKGKRIECLYIFRQIVALVDYHHTQG  349 (1092)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-----------~~~~~~~~~~i~~qil~~l~~lHs~g  349 (1092)
                      ...+...+                .+|||+.|++|.+++....           ..++...++.++.||+.||.|||++|
T Consensus        86 ~~~~~~~~----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~  149 (295)
T cd05097          86 CVSDDPLC----------------MITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLN  149 (295)
T ss_pred             EcCCCccE----------------EEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            55433332                3899999999999996532           13566788999999999999999999


Q ss_pred             ccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccc
Q 001366          350 VTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSL  429 (1092)
Q Consensus       350 IvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (1092)
                      |+||||||+||+++.++.+|++|||+++.+.....                                             
T Consensus       150 i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~---------------------------------------------  184 (295)
T cd05097         150 FVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDY---------------------------------------------  184 (295)
T ss_pred             eeccccChhhEEEcCCCcEEecccccccccccCcc---------------------------------------------
Confidence            99999999999999999999999998865431000                                             


Q ss_pred             ccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC
Q 001366          430 FPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC  509 (1092)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~  509 (1092)
                                                                              ........++..|+|||.+.+..+
T Consensus       185 --------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~  208 (295)
T cd05097         185 --------------------------------------------------------YRIQGRAVLPIRWMAWESILLGKF  208 (295)
T ss_pred             --------------------------------------------------------eeccCcCcCceeecChhhhccCCc
Confidence                                                                    000012344667999999998899


Q ss_pred             CccccchhhhHHHHHHcCC-----CCcHHHHH--HHH----HhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHH
Q 001366          510 TTSSNIYSLGVLFFELFGR-----FDSERALA--AAM----SDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTRE  578 (1092)
Q Consensus       510 t~~sDIwSLGvll~ell~~-----f~~~~~~~--~~~----~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e  578 (1092)
                      +.++|||||||++|||++.     |.......  ...    ...............++.+.+|+.+||..+|.+||++.+
T Consensus       209 ~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~  288 (295)
T cd05097         209 TTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNK  288 (295)
T ss_pred             CchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHH
Confidence            9999999999999999872     33221111  111    111111222223345688999999999999999999999


Q ss_pred             Hhh
Q 001366          579 ILQ  581 (1092)
Q Consensus       579 iL~  581 (1092)
                      |++
T Consensus       289 i~~  291 (295)
T cd05097         289 IHH  291 (295)
T ss_pred             HHH
Confidence            976

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.94  E-value=3.7e-26  Score=253.37  Aligned_cols=245  Identities=13%  Similarity=0.090  Sum_probs=169.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|+||+|.....-.. ...++.|................+..++....|||++.+..........+           
T Consensus        15 ~g~~g~vy~~~~~~~~~~-~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   82 (268)
T cd05063          15 AGEFGEVFRGILKMPGRK-EVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAM-----------   82 (268)
T ss_pred             CCCCccEEEEEEecCCCC-ceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcE-----------
Confidence            346799999986321000 11233333211111222223344556778889999987655443222222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|||+.|++|.+++......++..+++.++.|++.||+|||++||+||||||+||+++.++.+|++|||++...
T Consensus        83 -----lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~  157 (268)
T cd05063          83 -----IITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVL  157 (268)
T ss_pred             -----EEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceec
Confidence                 389999999999999776566788899999999999999999999999999999999999999999999988654


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ......                                                                          
T Consensus       158 ~~~~~~--------------------------------------------------------------------------  163 (268)
T cd05063         158 EDDPEG--------------------------------------------------------------------------  163 (268)
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            310000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                .........+..|+|||.+.+..++.++|||||||++|||++ +   |..... 
T Consensus       164 --------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~-  216 (268)
T cd05063         164 --------------------------TYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN-  216 (268)
T ss_pred             --------------------------ceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH-
Confidence                                      000001122346999999998889999999999999999986 4   322222 


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ...+..+......|.....++.+.+|+.+||..+|.+||++.+|++.
T Consensus       217 ~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~  263 (268)
T cd05063         217 HEVMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNL  263 (268)
T ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            22333333333334444567888999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.94  E-value=2e-26  Score=253.60  Aligned_cols=241  Identities=17%  Similarity=0.173  Sum_probs=174.2

Q ss_pred             cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||++....    .+..++.|...... ..........+...++..+|||++.+.+....+...+           
T Consensus        11 g~~g~~~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~-----------   75 (256)
T cd08218          11 GSFGKAILVKSKE----DGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLY-----------   75 (256)
T ss_pred             CCceEEEEEEEcC----CCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEE-----------
Confidence            3567888776522    13344444332211 1222234455566778889999887655533222222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           +++||+.|++|.+++... ...++..+++.++.||+.||.|||++||+|+||+|+||+++.++.++++|||++..
T Consensus        76 -----lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~  150 (256)
T cd08218          76 -----IVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARV  150 (256)
T ss_pred             -----EEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceee
Confidence                 379999999999999653 34567878999999999999999999999999999999999999999999998865


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       151 ~~~~~---------------------------------------------------------------------------  155 (256)
T cd08218         151 LNSTV---------------------------------------------------------------------------  155 (256)
T ss_pred             cCcch---------------------------------------------------------------------------
Confidence            33100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                  .......|++.|+|||.+.+..++.++|+|||||++|+|+++   |......
T Consensus       156 ----------------------------~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~  207 (256)
T cd08218         156 ----------------------------ELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMK  207 (256)
T ss_pred             ----------------------------hhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHH
Confidence                                        000123577889999999988899999999999999999987   3333333


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ......+. ...++.....++.+.++|.+||+++|.+||++.++|+||||
T Consensus       208 ~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~~~~  256 (256)
T cd08218         208 NLVLKIIR-GSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILEKNFI  256 (256)
T ss_pred             HHHHHHhc-CCCCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHhhCcCC
Confidence            33333332 23333444567889999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.9e-25  Score=243.87  Aligned_cols=243  Identities=21%  Similarity=0.283  Sum_probs=210.9

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      +.-....|+++.|-.||++||+|+..|.|+|||+.+       -........|..+|..+.|+|+++.+|++|+.|+.++
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k  136 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK  136 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence            345577899999999999999999999999999654       1122345679999999999999899999999999999


Q ss_pred             EEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC-ceeeeEecCCceEEEEEccCCCeEEEEEE
Q 001366          855 LWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK-NSLATIKNIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~-~~l~~l~~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      +||+.+......+.+|++.|.|.+|+|.++.+++|||+||+|++||+++. ..+.++.|..+|.++.|-|.|. ++|+++
T Consensus       137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-~iasAg  215 (487)
T KOG0310|consen  137 YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-LIASAG  215 (487)
T ss_pred             EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-EEEEcC
Confidence            99999988777889999999999999988889999999999999999987 7888999999999999999986 666554


Q ss_pred             CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEE
Q 001366          934 ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v 1012 (1092)
                       ...|++||+-++.+.+..+..|.+.|+|+++. ++..|+||+-|+.+++||+.+        .+.+..+. ..++|.++
T Consensus       216 -Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~--------~Kvv~s~~-~~~pvLsi  285 (487)
T KOG0310|consen  216 -GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN--------YKVVHSWK-YPGPVLSI  285 (487)
T ss_pred             -CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc--------eEEEEeee-cccceeeE
Confidence             56899999998877666666799999999997 778999999999999999773        34455553 57899999


Q ss_pred             EEecCCCEEEEEecCCcEEEEeC
Q 001366         1013 GLSTADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus      1013 ~~spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                      +++|++..++.|..||.+.+=+.
T Consensus       286 avs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  286 AVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             EecCCCceEEEecccceeeeehh
Confidence            99999999999999998877743

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.94  E-value=3.9e-26  Score=253.61  Aligned_cols=241  Identities=15%  Similarity=0.091  Sum_probs=170.2

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|.||+|...+.-.. ...++.|................+..++....|||++..+.....+.               
T Consensus        17 g~~g~v~~~~~~~~~~~-~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~---------------   80 (270)
T cd05056          17 GQFGDVYQGVYMSPENE-KIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENP---------------   80 (270)
T ss_pred             ccceeEEEEEEecCCCC-CcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCCC---------------
Confidence            57899999976331100 12233343322222222333444556777889999998665422111               


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                        ...+|||+.+++|.++|......++...++.++.||+.||+|||++|++||||||+||+++.++.+|++|||+++...
T Consensus        81 --~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~  158 (270)
T cd05056          81 --VWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLE  158 (270)
T ss_pred             --cEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeecc
Confidence              113899999999999998766667888999999999999999999999999999999999999999999999887643


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      .....                                                                           
T Consensus       159 ~~~~~---------------------------------------------------------------------------  163 (270)
T cd05056         159 DESYY---------------------------------------------------------------------------  163 (270)
T ss_pred             cccce---------------------------------------------------------------------------
Confidence            10000                                                                           


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERALA  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~  536 (1092)
                                                 ..+...++..|+|||.+....++.++|||||||++|||++ +   |.......
T Consensus       164 ---------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~  216 (270)
T cd05056         164 ---------------------------KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNND  216 (270)
T ss_pred             ---------------------------ecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence                                       0001123456999999988889999999999999999885 3   44433333


Q ss_pred             HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          537 AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .... +.....++.....++.+.+|+.+||.++|.+|||+.+++..
T Consensus       217 ~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~  261 (270)
T cd05056         217 VIGR-IENGERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQ  261 (270)
T ss_pred             HHHH-HHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            3322 22222223334557889999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.94  E-value=3.6e-26  Score=278.14  Aligned_cols=185  Identities=17%  Similarity=0.155  Sum_probs=131.5

Q ss_pred             CcccccCCCCCHHHHHhhcCCC-------------------CCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          304 LRQGSSDHGVNLREWLNARGHK-------------------GKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       304 ~~~~~~~~GgsL~~~l~~~~~~-------------------~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                      .++++|+.+++|.+++......                   .....+..|+.||+.||+|||++||+||||||+|||++.
T Consensus       211 ~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~NILl~~  290 (566)
T PLN03225        211 WLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFSE  290 (566)
T ss_pred             EEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHHEEEeC
Confidence            3589999999999999754321                   122346689999999999999999999999999999986


Q ss_pred             -CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCc
Q 001366          365 -SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANE  443 (1092)
Q Consensus       365 -~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1092)
                       .+.+|++|||+++.+.....                                                           
T Consensus       291 ~~~~~KL~DFGlA~~l~~~~~-----------------------------------------------------------  311 (566)
T PLN03225        291 GSGSFKIIDLGAAADLRVGIN-----------------------------------------------------------  311 (566)
T ss_pred             CCCcEEEEeCCCccccccccc-----------------------------------------------------------
Confidence             57899999999976431000                                                           


Q ss_pred             cccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC----------------
Q 001366          444 SDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG----------------  507 (1092)
Q Consensus       444 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~----------------  507 (1092)
                                                                 ......+||+.|||||.+...                
T Consensus       312 -------------------------------------------~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~s  348 (566)
T PLN03225        312 -------------------------------------------YIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALS  348 (566)
T ss_pred             -------------------------------------------cCCcccccCCCccChHHhhccCCCCCCcccccccccc
Confidence                                                       000145778899999976432                


Q ss_pred             ------CCCccccchhhhHHHHHHcCC-CCcHHHHHHHHHhcccc---------CCCCCC-----------CCCChhHHH
Q 001366          508 ------VCTTSSNIYSLGVLFFELFGR-FDSERALAAAMSDLRDR---------ILPPSF-----------LSENPKEAG  560 (1092)
Q Consensus       508 ------~~t~~sDIwSLGvll~ell~~-f~~~~~~~~~~~~~~~~---------~~p~~~-----------~~~~~~~~~  560 (1092)
                            .++.++|||||||+||||+++ |............+...         ..++..           ........+
T Consensus       349 p~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~d  428 (566)
T PLN03225        349 PVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWE  428 (566)
T ss_pred             chhccccCCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHH
Confidence                  234567999999999999986 44443333332222211         011110           111223458


Q ss_pred             HHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          561 FCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       561 li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      ||.+||++||.+|||+.++|+||||.....
T Consensus       429 Li~~mL~~dP~kR~ta~e~L~Hpff~~~~~  458 (566)
T PLN03225        429 LLKSMMRFKGRQRISAKAALAHPYFDREGL  458 (566)
T ss_pred             HHHHHccCCcccCCCHHHHhCCcCcCCCCc
Confidence            999999999999999999999999987544

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.94  E-value=2.3e-26  Score=257.91  Aligned_cols=245  Identities=15%  Similarity=0.112  Sum_probs=166.0

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..++.|.||++....    .+..++.|...............++...+... .|||++.++.........+         
T Consensus        13 g~G~~g~vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~---------   79 (288)
T cd06616          13 GRGAFGTVNKMLHKP----SGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCW---------   79 (288)
T ss_pred             CCCCceEEEEEEECC----CCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEE---------
Confidence            345789999987632    24445555443222222233333444445455 5999998665433211111         


Q ss_pred             ccccCCCcccccCCCCCHHHHH---hh-cCCCCCHHHHHHHHHHHHHHHHHhhhc-CccccCCCCCCeEEccCCcEEEec
Q 001366          298 SCWIGGLRQGSSDHGVNLREWL---NA-RGHKGKRIECLYIFRQIVALVDYHHTQ-GVTFLDLKPSSFKLLQSNQVKYIG  372 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l---~~-~~~~~~~~~~~~i~~qil~~l~~lHs~-gIvHrDLKP~Nill~~~~~vkl~D  372 (1092)
                             ..|+|+.+ +|.++.   .. ....+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+|++|
T Consensus        80 -------~~~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~d  151 (288)
T cd06616          80 -------ICMELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCD  151 (288)
T ss_pred             -------EEEecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEee
Confidence                   25777654 555443   22 234678889999999999999999974 999999999999999999999999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||+++.+..+.                                                                     
T Consensus       152 fg~~~~~~~~~---------------------------------------------------------------------  162 (288)
T cd06616         152 FGISGQLVDSI---------------------------------------------------------------------  162 (288)
T ss_pred             cchhHHhccCC---------------------------------------------------------------------
Confidence            99886543100                                                                     


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC---CCCccccchhhhHHHHHHcCCC
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG---VCTTSSNIYSLGVLFFELFGRF  529 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~---~~t~~sDIwSLGvll~ell~~f  529 (1092)
                                                         ......|+..|+|||.+.+.   .++.++|||||||++|||++|.
T Consensus       163 -----------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~  207 (288)
T cd06616         163 -----------------------------------AKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGK  207 (288)
T ss_pred             -----------------------------------ccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCC
Confidence                                               00123567889999999876   6899999999999999999863


Q ss_pred             ---CcHHHHHHHHHhccccCCCC----CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          530 ---DSERALAAAMSDLRDRILPP----SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       530 ---~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                         .........+........|.    .....++++.+|+.+||+++|++|||+.+|+.||||...
T Consensus       208 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~~~~~~~  273 (288)
T cd06616         208 FPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEHPFIKDY  273 (288)
T ss_pred             CCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhch
Confidence               32222222222222222111    112356788999999999999999999999999999764

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.94  E-value=1.3e-26  Score=286.94  Aligned_cols=259  Identities=19%  Similarity=0.170  Sum_probs=172.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||+|...    .++..++.|+.......  ....+-.++...+...+|||++.++.....+...+         
T Consensus        12 kGgfG~VYlA~d~----~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~ly---------   78 (932)
T PRK13184         12 KGGMGEVYLAYDP----VCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVY---------   78 (932)
T ss_pred             cCCCEEEEEEEEC----CCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEE---------
Confidence            4578999999762    23555666554322111  12233445667788889999998766544333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcC----------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARG----------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~----------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                             .+|+|++|++|.++|....          ...+...++.++.||+.||+|||++||+||||||+||+++..+.
T Consensus        79 -------LVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~  151 (932)
T PRK13184         79 -------YTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGE  151 (932)
T ss_pred             -------EEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCC
Confidence                   2799999999999996421          12344567899999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +|++|||+++..........                                                            
T Consensus       152 vKLiDFGLAk~i~~~~~~~~------------------------------------------------------------  171 (932)
T PRK13184        152 VVILDWGAAIFKKLEEEDLL------------------------------------------------------------  171 (932)
T ss_pred             EEEEecCcceeccccccccc------------------------------------------------------------
Confidence            99999999987531100000                                                            


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                      +..... .+.                        ...........+||+.|||||.+.+..++.++|||||||+||||++
T Consensus       172 ~l~~~~-~~s------------------------~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLT  226 (932)
T PRK13184        172 DIDVDE-RNI------------------------CYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLT  226 (932)
T ss_pred             cccccc-ccc------------------------cccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHH
Confidence            000000 000                        0000011124579999999999999999999999999999999998


Q ss_pred             C---CCcHHHHHHHHHhcc-ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          528 R---FDSERALAAAMSDLR-DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      +   |.............. .......+...++.+.+++.+||++||.+||++.+.|...
T Consensus       227 G~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~  286 (932)
T PRK13184        227 LSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQD  286 (932)
T ss_pred             CCCCCCCcchhhhhhhhhccChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            6   333222211111111 1111112335678889999999999999998877766554

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.94  E-value=8.8e-26  Score=257.01  Aligned_cols=243  Identities=14%  Similarity=0.115  Sum_probs=173.8

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      -..++.|.||+|....    .+..++.|+........  .......+..++...+|||++.+......+...+       
T Consensus        29 lg~g~~g~v~~~~~~~----~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-------   97 (313)
T cd06633          29 IGHGSFGAVYFATNSH----TNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAW-------   97 (313)
T ss_pred             eccCCCeEEEEEEECC----CCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEE-------
Confidence            3456789999997522    24455555543222211  1122334556777889999997665544332222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               ++|||+. ++|.+++......++..+++.++.||+.+|.|||++||+|+||||+||+++.++.+|++|||+
T Consensus        98 ---------lv~e~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~  167 (313)
T cd06633          98 ---------LVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGS  167 (313)
T ss_pred             ---------EEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCC
Confidence                     3799996 578888876666788889999999999999999999999999999999999999999999997


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      +.....                                                                          
T Consensus       168 ~~~~~~--------------------------------------------------------------------------  173 (313)
T cd06633         168 ASKSSP--------------------------------------------------------------------------  173 (313)
T ss_pred             CcccCC--------------------------------------------------------------------------
Confidence            643110                                                                          


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc---CCCCCccccchhhhHHHHHHcCCC---
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS---GGVCTTSSNIYSLGVLFFELFGRF---  529 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~---~~~~t~~sDIwSLGvll~ell~~f---  529 (1092)
                                                       .....|+..|+|||.+.   ...++.++|||||||++|||+++.   
T Consensus       174 ---------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~  220 (313)
T cd06633         174 ---------------------------------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL  220 (313)
T ss_pred             ---------------------------------CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                                             01335778899999984   356889999999999999999863   


Q ss_pred             CcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          530 DSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      .........................+..+.+|+.+||+++|.+||++.+++.||||...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~~~~~~~  279 (313)
T cd06633         221 FNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELLRHDFVRRD  279 (313)
T ss_pred             CCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCC
Confidence            33333333332222221111222345678999999999999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.94  E-value=4.4e-26  Score=257.11  Aligned_cols=245  Identities=12%  Similarity=0.083  Sum_probs=166.2

Q ss_pred             ccccceeeeCCCCCcccc------------ccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKE------------RRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      .+|.|.||++...+....            ....++.|+..............++...+...+|||++.++.....+...
T Consensus        15 ~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~   94 (296)
T cd05095          15 EGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPL   94 (296)
T ss_pred             CCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            347899998764331110            01123333332211112222334556678888999999877765543333


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCC----------CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCC
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH----------KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKP  357 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~----------~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP  357 (1092)
                      +                .+|||+.|++|.+++.....          .++..+++.++.||+.||+|||++||+||||||
T Consensus        95 ~----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp  158 (296)
T cd05095          95 C----------------MITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLAT  158 (296)
T ss_pred             E----------------EEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCCh
Confidence            3                38999999999999965431          355567999999999999999999999999999


Q ss_pred             CCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCc
Q 001366          358 SSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNK  437 (1092)
Q Consensus       358 ~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (1092)
                      +||+++.++.++++|||+++.+......                                                    
T Consensus       159 ~Nili~~~~~~~l~dfg~~~~~~~~~~~----------------------------------------------------  186 (296)
T cd05095         159 RNCLVGKNYTIKIADFGMSRNLYSGDYY----------------------------------------------------  186 (296)
T ss_pred             heEEEcCCCCEEeccCcccccccCCcce----------------------------------------------------
Confidence            9999999999999999988764310000                                                    


Q ss_pred             ccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchh
Q 001366          438 IETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYS  517 (1092)
Q Consensus       438 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwS  517 (1092)
                                                                       .......++..|++||.+.++.++.++||||
T Consensus       187 -------------------------------------------------~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwS  217 (296)
T cd05095         187 -------------------------------------------------RIQGRAVLPIRWMSWESILLGKFTTASDVWA  217 (296)
T ss_pred             -------------------------------------------------eccCcCcCccccCCHHHHhcCCccchhhhhH
Confidence                                                             0000123356699999988888999999999


Q ss_pred             hhHHHHHHcC--C---CCcHHHHHHH------HHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          518 LGVLFFELFG--R---FDSERALAAA------MSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       518 LGvll~ell~--~---f~~~~~~~~~------~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      |||+||||++  +   |.........      ..........+.....++.+.+|+.+||+.+|.+||++.+|++
T Consensus       218 lG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~  292 (296)
T cd05095         218 FGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHA  292 (296)
T ss_pred             HHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            9999999996  2   3222111111      1111111222233345688899999999999999999999976

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.93  E-value=2.6e-26  Score=252.46  Aligned_cols=241  Identities=17%  Similarity=0.162  Sum_probs=175.1

Q ss_pred             cccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|.||++...+    .+..++.|....... ........++...++..+|+|++.++.....+...+           
T Consensus        11 g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~-----------   75 (257)
T cd08225          11 GSFGKIYLAKAKS----DSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLF-----------   75 (257)
T ss_pred             CCcceEEEEEEcC----CCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEE-----------
Confidence            4678999988743    233344444322211 122333445666788889999998766543332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc-EEEecccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ-VKYIGPIIQK  377 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~-vkl~Dfg~~~  377 (1092)
                           +++||+.|++|.+++... +..++...++.++.||+.||.|||++||+|+||||+||+++.++. +|++|||.+.
T Consensus        76 -----lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~  150 (257)
T cd08225          76 -----IVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIAR  150 (257)
T ss_pred             -----EEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccch
Confidence                 389999999999999653 345788889999999999999999999999999999999998754 6999999776


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       151 ~~~~~~--------------------------------------------------------------------------  156 (257)
T cd08225         151 QLNDSM--------------------------------------------------------------------------  156 (257)
T ss_pred             hccCCc--------------------------------------------------------------------------
Confidence            533100                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                   .......|+..|+|||.+.+..++.++|+|||||++|||+++   |.....
T Consensus       157 -----------------------------~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  207 (257)
T cd08225         157 -----------------------------ELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNL  207 (257)
T ss_pred             -----------------------------ccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccH
Confidence                                         000123577889999999888899999999999999999986   333322


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ....+ ......+++.....+..+.+++.+||..+|++|||+.+++.||||
T Consensus       208 ~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~~~~  257 (257)
T cd08225         208 HQLVL-KICQGYFAPISPNFSRDLRSLISQLFKVSPRDRPSITSILKRPFL  257 (257)
T ss_pred             HHHHH-HHhcccCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhhCCCC
Confidence            22222 233333444445567889999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.93  E-value=4.2e-26  Score=256.34  Aligned_cols=245  Identities=14%  Similarity=0.076  Sum_probs=166.4

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|+||++...+    .+..++.|+......  ....-.++...+... +|||++.++..........    .+-    
T Consensus        33 g~~~~vy~~~~~~----~~~~~aik~~~~~~~--~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~----~~~----   98 (291)
T cd06639          33 GTYGKVYKVTNKK----DGSLAAVKILDPISD--VDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLV----GGQ----   98 (291)
T ss_pred             CCCeEEEEEEECC----CCCEEEEEEeccccc--HHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccC----CCe----
Confidence            4668999987632    234445544422111  111112233344444 7999987665533211100    011    


Q ss_pred             ccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                         ...+|||++|++|.++++.   .+..+++..++.++.||+.||+|||++||+||||||+||+++.++.+|++|||++
T Consensus        99 ---~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~  175 (291)
T cd06639          99 ---LWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVS  175 (291)
T ss_pred             ---eEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccc
Confidence               1248999999999999863   3456788899999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.......                                                                        
T Consensus       176 ~~~~~~~~------------------------------------------------------------------------  183 (291)
T cd06639         176 AQLTSTRL------------------------------------------------------------------------  183 (291)
T ss_pred             hhcccccc------------------------------------------------------------------------
Confidence            76431000                                                                        


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-----CCCccccchhhhHHHHHHcCCC--
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-----VCTTSSNIYSLGVLFFELFGRF--  529 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-----~~t~~sDIwSLGvll~ell~~f--  529 (1092)
                                                     ......|+..|+|||.+...     .++.++|||||||++|||+++.  
T Consensus       184 -------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p  232 (291)
T cd06639         184 -------------------------------RRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPP  232 (291)
T ss_pred             -------------------------------cccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCC
Confidence                                           00023577889999998653     3689999999999999999873  


Q ss_pred             -CcHHHHHHHHHhccccCCCC--CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          530 -DSERALAAAMSDLRDRILPP--SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       530 -~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                       .............+ ...+.  ......+.+.+|+.+||+++|++||++.+|++||||+
T Consensus       233 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~~~~~  291 (291)
T cd06639         233 LFDMHPVKTLFKIPR-NPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFIK  291 (291)
T ss_pred             CCCCcHHHHHHHHhc-CCCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHhcCcccC
Confidence             33222222222222 21111  1223456788999999999999999999999999984

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.93  E-value=4.7e-26  Score=251.50  Aligned_cols=241  Identities=16%  Similarity=0.089  Sum_probs=169.9

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||++...+     +..++.|.+.......  ..-.++...+...+||+++.++.... ...     
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~-----~~~~~~k~~~~~~~~~--~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~-----   74 (260)
T cd05070           8 LQLIKKLGNGQFGEVWMGTWNG-----NTKVAVKTLKPGTMSP--ESFLEEAQIMKKLRHDKLVQLYAVVS-EEP-----   74 (260)
T ss_pred             hhhhheeccccCceEEEEEecC-----CceeEEEEecCCCCCH--HHHHHHHHHHHhcCCCceEEEEeEEC-CCC-----
Confidence            3444443  4789999997643     3344554443322211  12234455677889999887654321 111     


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                          .       ..+|+|+.|++|.+++... ...++...++.++.||+.||.|||++||+||||||+||+++.++.+|+
T Consensus        75 ----~-------~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l  143 (260)
T cd05070          75 ----I-------YIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKI  143 (260)
T ss_pred             ----c-------EEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEe
Confidence                1       1389999999999999653 345788889999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||++..+.....                                                                  
T Consensus       144 ~dfg~~~~~~~~~~------------------------------------------------------------------  157 (260)
T cd05070         144 ADFGLARLIEDNEY------------------------------------------------------------------  157 (260)
T ss_pred             CCceeeeeccCccc------------------------------------------------------------------
Confidence            99998865431000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......++..|+|||.+.+..++.++|||||||++|||++ + 
T Consensus       158 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~  201 (260)
T cd05070         158 ------------------------------------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR  201 (260)
T ss_pred             ------------------------------------ccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCC
Confidence                                                00001234557999999988889999999999999999997 4 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                        |...... .....+.....++.....+..+.+|+.+||.++|++|||+++++.
T Consensus       202 ~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  255 (260)
T cd05070         202 VPYPGMNNR-EVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQS  255 (260)
T ss_pred             CCCCCCCHH-HHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence              4332222 222233333333444556788899999999999999999998874

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.93  E-value=5.6e-26  Score=252.31  Aligned_cols=243  Identities=14%  Similarity=0.050  Sum_probs=162.4

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|+||+|...+...  ...++.|...............++..++...+|||++.++.........+          
T Consensus         4 g~G~~g~Vy~~~~~~~~~--~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~----------   71 (269)
T cd05087           4 GNGWFGKVILGEVNSGYT--PAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYL----------   71 (269)
T ss_pred             cccCCceEEEEEEcCCCC--ceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcE----------
Confidence            346789999997533221  12233333222222222234455667788889999997655433222111          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC----CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG----HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~----~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                            .+|||+.|++|.++|....    ...+...++.++.|++.||+|||++||+||||||+||+++.++.+|++|||
T Consensus        72 ------lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg  145 (269)
T cd05087          72 ------LVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYG  145 (269)
T ss_pred             ------EEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCcc
Confidence                  3899999999999996532    234566778899999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.......                                                                      
T Consensus       146 ~~~~~~~~~~----------------------------------------------------------------------  155 (269)
T cd05087         146 LSHNKYKEDY----------------------------------------------------------------------  155 (269)
T ss_pred             ccccccCcce----------------------------------------------------------------------
Confidence            8754321000                                                                      


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-------CCCccccchhhhHHHHHHcC
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-------VCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-------~~t~~sDIwSLGvll~ell~  527 (1092)
                                                     ........|+..|+|||++.+.       .++.++|||||||++|||++
T Consensus       156 -------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~  204 (269)
T cd05087         156 -------------------------------YVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFE  204 (269)
T ss_pred             -------------------------------eecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHh
Confidence                                           0000123567789999998642       35789999999999999985


Q ss_pred             -C---CCcHHHHHHHHHhccc---cCCCCC-CCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          528 -R---FDSERALAAAMSDLRD---RILPPS-FLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       528 -~---f~~~~~~~~~~~~~~~---~~~p~~-~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                       +   |...............   ....|. ....++.+.+++..|+ .+|.+|||+.||+.
T Consensus       205 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~  265 (269)
T cd05087         205 LGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHL  265 (269)
T ss_pred             CCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHH
Confidence             4   4332222221111111   111222 2245677889999998 68999999999985

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-23  Score=252.49  Aligned_cols=324  Identities=13%  Similarity=0.190  Sum_probs=212.0

Q ss_pred             ceEEeeEEeeeecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCC
Q 001366          764 FEVQGMLRTGEFNNSANVICSISFDRDE-DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKN  842 (1092)
Q Consensus       764 ~~~~~~l~~~~l~~h~~~V~sl~fspdg-~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~  842 (1092)
                      |.+.|.+..+ +..|+..|..++.++.. .+|+|||.||+|+||+......+...........-..+.+.++...+. ++
T Consensus      1034 W~p~G~lVAh-L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~-~~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAH-LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN-GD 1111 (1431)
T ss_pred             CCccceEeeh-hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC-CC
Confidence            4555655543 56788888888887654 999999999999999987643322222222222226788999988886 88


Q ss_pred             EEEEEECCCcEEEEECCCC-------ceEEEeeccC--ccEEEEEEecCCCC-EEEEEeCCCcEEEEecCCCceeeeEec
Q 001366          843 YLASADYDGVVKLWDACTG-------QTVSHYIEHE--KRAWSVDFSQVHPT-KLASGSDDCSVKLWNINEKNSLATIKN  912 (1092)
Q Consensus       843 ~LaSgs~DgtV~IWD~~tg-------~~i~~l~~h~--~~V~sv~fsp~~~~-~laSgs~Dg~I~iWDl~~~~~l~~l~~  912 (1092)
                      .+|.++.||.|++.+++--       .+.+....+.  .-|..-+|...... .++.+..-+.|..||++....++++++
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            9999999999999998752       1222222222  22344444443445 677788889999999999988888874


Q ss_pred             ---CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc--CC--CEEEE-EE-CCCeEEEE
Q 001366          913 ---IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL--DS--GTLVT-AS-TDNKLKLW  983 (1092)
Q Consensus       913 ---~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs--~~--~~L~S-gs-~Dg~I~vW  983 (1092)
                         .+.|++++.+|.+. +++.|+..|.+.+||+|=.......-.++..++..|..+  .+  ...++ ++ ..+.|.+|
T Consensus      1192 ~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             CccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence               57799999999995 999999999999999996544333334566788877765  23  34444 44 57789999


Q ss_pred             EcCCCCCCCC---CCCceeEEEc--------CCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCcee-eeecccc--
Q 001366          984 DLKRTSHTGP---STNACSLTFS--------GHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPIT-SYKFGSI-- 1049 (1092)
Q Consensus       984 Dl~~~~~~~~---~~~~~~~~l~--------~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~-~~~~~~~-- 1049 (1092)
                      ++.++.....   ..........        .+.-.....++.--+.++.+|+.|..|+.||...+.... .+.-++.  
T Consensus      1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~ 1350 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSY 1350 (1431)
T ss_pred             ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccc
Confidence            9986431100   0000000000        122223344455556799999999999999987665441 1110000  


Q ss_pred             ---------CCCCC----------------------------c--cccCCCCCCEEEEEEeC-CCCEEEEEecCCeEEEE
Q 001366         1050 ---------DPISG----------------------------K--ETDDDNGLFVSSVCWRR-RSDMVVAANSSGCIKVL 1089 (1092)
Q Consensus      1050 ---------~~i~~----------------------------~--~~~~~h~~~V~sva~sp-d~~~Lasgs~DG~V~vW 1089 (1092)
                               ..+.+                            .  .....|-..|+++++-. +..+|++++.||.|+||
T Consensus      1351 ~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1351 STNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred             cccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence                     00000                            0  01123677888888665 35689999999999999


Q ss_pred             E
Q 001366         1090 Q 1090 (1092)
Q Consensus      1090 ~ 1090 (1092)
                      .
T Consensus      1431 k 1431 (1431)
T KOG1240|consen 1431 K 1431 (1431)
T ss_pred             C
Confidence            5

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.93  E-value=4.2e-26  Score=253.02  Aligned_cols=243  Identities=13%  Similarity=0.116  Sum_probs=167.4

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      ++.|+||+|..... ...+..++.|................+...+...+|||++........+...+            
T Consensus        15 g~~g~v~~~~~~~~-~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~------------   81 (267)
T cd05066          15 GEFGEVCSGRLKLP-GKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVM------------   81 (267)
T ss_pred             cCCCceEEEEEecC-CCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccE------------
Confidence            46789999865210 00112333333321111222223344556677789999998655543222222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          .+|||++|++|.+++......++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++...
T Consensus        82 ----lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd05066          82 ----IVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLE  157 (267)
T ss_pred             ----EEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccccc
Confidence                3799999999999998766667888999999999999999999999999999999999999999999999887643


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      .....                                                                           
T Consensus       158 ~~~~~---------------------------------------------------------------------------  162 (267)
T cd05066         158 DDPEA---------------------------------------------------------------------------  162 (267)
T ss_pred             cccce---------------------------------------------------------------------------
Confidence            10000                                                                           


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-CCCc---HHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-RFDS---ERALA  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~f~~---~~~~~  536 (1092)
                                               ........++..|+|||.+.+..++.++|+|||||++|||++ +..+   .....
T Consensus       163 -------------------------~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~  217 (267)
T cd05066         163 -------------------------AYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQD  217 (267)
T ss_pred             -------------------------eeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHH
Confidence                                     000001223457999999998889999999999999999885 5222   11111


Q ss_pred             HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          537 AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                       ....+.....++.....++.+.+|+.+||+++|.+||++.++++
T Consensus       218 -~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  261 (267)
T cd05066         218 -VIKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVS  261 (267)
T ss_pred             -HHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHH
Confidence             22222222223344456788999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.93  E-value=4.3e-26  Score=253.54  Aligned_cols=239  Identities=16%  Similarity=0.082  Sum_probs=164.0

Q ss_pred             hccccceeeeCCCCCcccccccc--ccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGM--IDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ..+|.|.||+|...+    .+..  ++.|.............-..+...+... .|||++.+++....+...+       
T Consensus         4 g~g~~g~v~~~~~~~----~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~-------   72 (270)
T cd05047           4 GEGNFGQVLKARIKK----DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLY-------   72 (270)
T ss_pred             CCCCCceEEEEEEcC----CCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCce-------
Confidence            346889999998633    1221  2233322111111222233444555556 8999998766544333222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCe
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSF  360 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Ni  360 (1092)
                               .+|||+.+++|.++|....               ..++..+++.++.||+.||+|||++||+||||||+||
T Consensus        73 ---------lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~ni  143 (270)
T cd05047          73 ---------LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNI  143 (270)
T ss_pred             ---------EEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceE
Confidence                     3899999999999996542               2366778999999999999999999999999999999


Q ss_pred             EEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccc
Q 001366          361 KLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIET  440 (1092)
Q Consensus       361 ll~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1092)
                      +++.++.+|++|||+++......                                                         
T Consensus       144 li~~~~~~kl~dfgl~~~~~~~~---------------------------------------------------------  166 (270)
T cd05047         144 LVGENYVAKIADFGLSRGQEVYV---------------------------------------------------------  166 (270)
T ss_pred             EEcCCCeEEECCCCCccccchhh---------------------------------------------------------
Confidence            99999999999999875311000                                                         


Q ss_pred             cCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhH
Q 001366          441 ANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGV  520 (1092)
Q Consensus       441 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGv  520 (1092)
                                                                   ..  .....+..|+|||.+.+..++.++|||||||
T Consensus       167 ---------------------------------------------~~--~~~~~~~~y~apE~~~~~~~~~~~Di~slG~  199 (270)
T cd05047         167 ---------------------------------------------KK--TMGRLPVRWMAIESLNYSVYTTNSDVWSYGV  199 (270)
T ss_pred             ---------------------------------------------hc--cCCCCccccCChHHHccCCCCchhhHHHHHH
Confidence                                                         00  0111244699999998888999999999999


Q ss_pred             HHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          521 LFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       521 ll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ++|||++ +   |.... .......+.....++.....++.+.+|+.+||+.+|.+||++.+++..
T Consensus       200 il~el~~~g~~pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  264 (270)
T cd05047         200 LLWEIVSLGGTPYCGMT-CAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  264 (270)
T ss_pred             HHHHHHcCCCCCccccC-HHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHH
Confidence            9999996 4   32221 112222222222222333456788999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.93  E-value=2.3e-26  Score=256.61  Aligned_cols=241  Identities=17%  Similarity=0.224  Sum_probs=172.2

Q ss_pred             cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||++....    .+..++.|...... ..........+...+...+|++++.+......+...+           
T Consensus        10 g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~-----------   74 (283)
T cd05118          10 GTYGVVYKARDKL----TGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLY-----------   74 (283)
T ss_pred             CCCceEEEEEcCC----CCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEE-----------
Confidence            4679999987632    23444554432221 1122333444556677778999998766654332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           +++||+++ +|.+++......++..+++.++.||+.||.|||++||+|+||||+||+++.++.+|++|||.+...
T Consensus        75 -----~v~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~  148 (283)
T cd05118          75 -----LVFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSF  148 (283)
T ss_pred             -----EEEeccCC-CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEec
Confidence                 37889876 999999776567888899999999999999999999999999999999999999999999987664


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       149 ~~~~----------------------------------------------------------------------------  152 (283)
T cd05118         149 GSPV----------------------------------------------------------------------------  152 (283)
T ss_pred             CCCc----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                 .......++.+|+|||.+.+. .++.++|||||||++|+|+++   |+.....
T Consensus       153 ---------------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~  205 (283)
T cd05118         153 ---------------------------RPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEI  205 (283)
T ss_pred             ---------------------------ccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                       001134577889999999876 789999999999999999986   4333322


Q ss_pred             HHHHHhccc--cC--------------------------CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          536 AAAMSDLRD--RI--------------------------LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       536 ~~~~~~~~~--~~--------------------------~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .........  ..                          .+......++++.+|+.+||++||.+||++.+++.||||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         206 DQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF  283 (283)
T ss_pred             HHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhCCCC
Confidence            221111110  00                          001122346788999999999999999999999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=4.2e-26  Score=256.08  Aligned_cols=246  Identities=20%  Similarity=0.191  Sum_probs=173.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|.||++...+    .+..++.|++...........-.++...+....|||++.++........       ...+  
T Consensus        11 ~g~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-------~~~~--   77 (287)
T cd06621          11 EGAGGSVTKCRLKN----TGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESS-------SSIG--   77 (287)
T ss_pred             cCCceEEEEEEECC----CCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCC-------CeEE--
Confidence            45679999998743    2455555555332222233444556667888899999976543321110       0011  


Q ss_pred             ccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                           .+|||++|++|.+++..   ....++...+..++.||+.||.|||++|++|+||+|+||+++.++.++++|||++
T Consensus        78 -----lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~  152 (287)
T cd06621          78 -----IAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVS  152 (287)
T ss_pred             -----EEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeecccc
Confidence                 37999999999998753   3445777789999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      .......                                                                         
T Consensus       153 ~~~~~~~-------------------------------------------------------------------------  159 (287)
T cd06621         153 GELVNSL-------------------------------------------------------------------------  159 (287)
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            6533100                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                      .....++..|+|||.+.+..++.++|||||||++|||+++   |....
T Consensus       160 --------------------------------~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~  207 (287)
T cd06621         160 --------------------------------AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEG  207 (287)
T ss_pred             --------------------------------cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCccc
Confidence                                            0022456779999999988999999999999999999986   32220


Q ss_pred             ----HHHHHHHhccc---cCCCCCC---CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          534 ----ALAAAMSDLRD---RILPPSF---LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       534 ----~~~~~~~~~~~---~~~p~~~---~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                          ........+..   ..++...   ...++.+.+|+.+||+++|++|||+.|+++||||...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~~~~~~~  272 (287)
T cd06621         208 EPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHPWIKAQ  272 (287)
T ss_pred             CCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhCcccccc
Confidence                11111121111   1111111   1234678899999999999999999999999999543

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.93  E-value=6.5e-26  Score=251.89  Aligned_cols=242  Identities=14%  Similarity=0.062  Sum_probs=161.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|.||+|...+....  ...+.+.+...........-.++...++..+|||++.++.........+           
T Consensus         5 ~G~~g~v~~~~~~~~~~~--~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~-----------   71 (268)
T cd05086           5 NGWFGKVLLSEIYTDTGV--ARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYL-----------   71 (268)
T ss_pred             CCcCceEEEEEEEcCCCc--ceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccE-----------
Confidence            467899999864321111  1122222211112222344455556677889999998776644332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARG---HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~---~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                           .+|||++|++|.+++....   .......++.++.||+.||+|||++||+||||||+|||++.++.+|++|||++
T Consensus        72 -----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~  146 (268)
T cd05086          72 -----LVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIG  146 (268)
T ss_pred             -----EEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccc
Confidence                 3899999999999997542   23455567899999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      ........                                                                        
T Consensus       147 ~~~~~~~~------------------------------------------------------------------------  154 (268)
T cd05086         147 PSRYKEDY------------------------------------------------------------------------  154 (268)
T ss_pred             cccCcchh------------------------------------------------------------------------
Confidence            53220000                                                                        


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-------CCCCccccchhhhHHHHHHcCC-
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-------GVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-------~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                   ........|+..|+|||++..       ..++.++|||||||++|||+++ 
T Consensus       155 -----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~  205 (268)
T cd05086         155 -----------------------------IETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENA  205 (268)
T ss_pred             -----------------------------hhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCC
Confidence                                         000013456788999999753       2457899999999999999852 


Q ss_pred             ---CCcHHHHHHHHHhcccc---CCCCC-CCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          529 ---FDSERALAAAMSDLRDR---ILPPS-FLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~---~~p~~-~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                         |............++..   ...|. ....++.+.+++..|+ .+|.+||++++|++
T Consensus       206 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~  264 (268)
T cd05086         206 AQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCW-LSPEKRATAEEVHR  264 (268)
T ss_pred             CCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHHh-hCcccCCCHHHHHH
Confidence               43333322222222221   12222 2345678889999999 67999999999976

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.93  E-value=5.8e-26  Score=251.45  Aligned_cols=241  Identities=15%  Similarity=0.079  Sum_probs=169.7

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||+|...+     ...++.|+......  ....-.++...+....|||++.+..... ...     
T Consensus         8 ~~~~~~lg~g~~~~v~~~~~~~-----~~~valK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~-----   74 (262)
T cd05071           8 LRLEVKLGQGCFGEVWMGTWNG-----TTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEP-----   74 (262)
T ss_pred             eeEeeecCCCCCCcEEEEEecC-----CceEEEEecccCcc--CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCC-----
Confidence            3344444  4679999997643     22355555433222  1122344556777788999987654321 111     


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                          .+       .+|+|+.|++|.+++... +..++...++.++.|++.||+|+|++||+||||||+||+++.++.+|+
T Consensus        75 ----~~-------lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L  143 (262)
T cd05071          75 ----IY-------IVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKV  143 (262)
T ss_pred             ----cE-------EEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEe
Confidence                11       389999999999999753 345777789999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||.++.+.....                                                                  
T Consensus       144 ~dfg~~~~~~~~~~------------------------------------------------------------------  157 (262)
T cd05071         144 ADFGLARLIEDNEY------------------------------------------------------------------  157 (262)
T ss_pred             ccCCceeecccccc------------------------------------------------------------------
Confidence            99998865431000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......++..|+|||.+.+..++.++|||||||++|||++ + 
T Consensus       158 ------------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~  201 (262)
T cd05071         158 ------------------------------------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR  201 (262)
T ss_pred             ------------------------------------ccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCC
Confidence                                                00002235667999999988889999999999999999998 3 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                        |........ +..+.....++.....++.+.+|+.+||+++|.+||++.++++
T Consensus       202 ~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~  255 (262)
T cd05071         202 VPYPGMVNREV-LDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQA  255 (262)
T ss_pred             CCCCCCChHHH-HHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence              433322222 2222222222333455788999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.93  E-value=4.8e-26  Score=254.42  Aligned_cols=242  Identities=17%  Similarity=0.175  Sum_probs=170.3

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCC-CCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNA-SPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|.|.||+|...+    .+..++.|...............++...+...+ |||++.++.....+...+         
T Consensus         8 g~g~~g~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~---------   74 (283)
T cd07830           8 GDGTFGSVYLARNKE----TGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELY---------   74 (283)
T ss_pred             ccCCceEEEEEEECC----CCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEE---------
Confidence            345789999998743    133344443322222222333444555666667 999998766544333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                             .+|+|+ +++|.+++.... ..++..+++.++.||+.+|.|||++||+|+||||+||+++.++.++++|||++
T Consensus        75 -------lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~  146 (283)
T cd07830          75 -------FVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLA  146 (283)
T ss_pred             -------EEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccc
Confidence                   389999 889999997654 56788899999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +......                                                                         
T Consensus       147 ~~~~~~~-------------------------------------------------------------------------  153 (283)
T cd07830         147 REIRSRP-------------------------------------------------------------------------  153 (283)
T ss_pred             eeccCCC-------------------------------------------------------------------------
Confidence            6533100                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                     ..+...++..|+|||.+.. ..++.++|+|||||++|||+++   |+..
T Consensus       154 -------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~  202 (283)
T cd07830         154 -------------------------------PYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGS  202 (283)
T ss_pred             -------------------------------CcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCC
Confidence                                           0113457888999998865 4579999999999999999986   3332


Q ss_pred             HHHHHHHHhcc--------------------ccCCC--------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          533 RALAAAMSDLR--------------------DRILP--------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       533 ~~~~~~~~~~~--------------------~~~~p--------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      ...........                    ....+        ..+...++.+.+|+.+||+.+|.+||++.|++.|||
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~~~  282 (283)
T cd07830         203 SEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQHPY  282 (283)
T ss_pred             ChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhCCC
Confidence            22211111100                    00001        112233577899999999999999999999999999


Q ss_pred             h
Q 001366          585 T  585 (1092)
Q Consensus       585 ~  585 (1092)
                      |
T Consensus       283 ~  283 (283)
T cd07830         283 F  283 (283)
T ss_pred             C
Confidence            7

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.93  E-value=2.7e-26  Score=256.63  Aligned_cols=242  Identities=17%  Similarity=0.190  Sum_probs=168.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||+|....    .+..++.|+........ .......+...+...+||+++.+......+...+          
T Consensus         9 ~g~~~~vy~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~----------   74 (283)
T cd07835           9 EGTYGVVYKARDKL----TGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLY----------   74 (283)
T ss_pred             CCCCeEEEEEEEcC----CCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEE----------
Confidence            34679999997532    23444554442221111 1122334556677788999998766543222222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                            ++|+|+. ++|.+++.... ..++...++.++.||+.||+|||++|++||||+|+||+++.++.++++|||+++
T Consensus        75 ------iv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~  147 (283)
T cd07835          75 ------LVFEFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLAR  147 (283)
T ss_pred             ------EEEeccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeeccccc
Confidence                  3788885 69999996654 457888999999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+...                                                                           
T Consensus       148 ~~~~~---------------------------------------------------------------------------  152 (283)
T cd07835         148 AFGVP---------------------------------------------------------------------------  152 (283)
T ss_pred             ccCCC---------------------------------------------------------------------------
Confidence            53210                                                                           


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                  ........++..|+|||.+.+. .++.++|||||||++|||+++   |....
T Consensus       153 ----------------------------~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  204 (283)
T cd07835         153 ----------------------------VRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDS  204 (283)
T ss_pred             ----------------------------ccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                        0001123467889999988764 578999999999999999996   43332


Q ss_pred             HHHHHHHhccc---------------------------cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          534 ALAAAMSDLRD---------------------------RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       534 ~~~~~~~~~~~---------------------------~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .........+.                           ..........++.+.+|+.+||+++|.+||++.|+++||||
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~  283 (283)
T cd07835         205 EIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQHPYF  283 (283)
T ss_pred             HHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcCCCC
Confidence            22221111110                           00011123445778999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.93  E-value=1.9e-26  Score=254.17  Aligned_cols=239  Identities=15%  Similarity=0.120  Sum_probs=175.0

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      +|.|.||++...    ..+..++.|+..-....  .......++...++..+|||++.++.........+          
T Consensus        11 g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~----------   76 (258)
T cd05578          11 GAFGKVCIVQKR----DTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMY----------   76 (258)
T ss_pred             CCCceEEEEEEc----cCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEE----------
Confidence            477899998763    23455555554322211  12334455566788889999998665543322222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            ++++|+.|++|.+++... ..++..+++.++.||++||.|||++||+|+||||+||+++.++.++++|||++..
T Consensus        77 ------lv~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~  149 (258)
T cd05578          77 ------LVVDLLLGGDLRYHLSQK-VKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATK  149 (258)
T ss_pred             ------EEEeCCCCCCHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccc
Confidence                  379999999999999776 4577779999999999999999999999999999999999999999999998765


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       150 ~~~~~---------------------------------------------------------------------------  154 (258)
T cd05578         150 VTPDT---------------------------------------------------------------------------  154 (258)
T ss_pred             cCCCc---------------------------------------------------------------------------
Confidence            33100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH-
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA-  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~-  534 (1092)
                                                   ......|+..|+|||.+.+..++.++|+|||||++|+|++|   |..... 
T Consensus       155 -----------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~  205 (258)
T cd05578         155 -----------------------------LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT  205 (258)
T ss_pred             -----------------------------cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc
Confidence                                         00123467789999999988899999999999999999986   332221 


Q ss_pred             -HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH--HHHhhhhhh
Q 001366          535 -LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT--REILQSEVT  585 (1092)
Q Consensus       535 -~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa--~eiL~~~~~  585 (1092)
                       .......... ..+......++.+.+|+.+||..+|.+||++  .|++.||||
T Consensus       206 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~~~~~~  258 (258)
T cd05578         206 IRDQIRAKQET-ADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLKNHPYF  258 (258)
T ss_pred             HHHHHHHHhcc-ccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHhcCCCC
Confidence             2222222221 1222223346889999999999999999999  999999997

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.93  E-value=3.5e-26  Score=252.38  Aligned_cols=246  Identities=19%  Similarity=0.201  Sum_probs=170.0

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|.||++.....-....-.+..++...............+..+++..+|||++.+..........         + 
T Consensus         9 g~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~---------~-   78 (260)
T cd08222           9 GKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAF---------C-   78 (260)
T ss_pred             cCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCce---------E-
Confidence            345789999886532100000001111111111122222333455677788999998765543322211         1 


Q ss_pred             cccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                            .++||+.|++|.+++..   .+..++..+++.++.|++.||+|||++||+|+||||+||+++ ++.+|++|||+
T Consensus        79 ------lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~-~~~~~l~d~g~  151 (260)
T cd08222          79 ------IITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLK-NNLLKIGDFGV  151 (260)
T ss_pred             ------EEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEee-cCCEeecccCc
Confidence                  37999999999999853   345688889999999999999999999999999999999996 47799999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++.......                                                                       
T Consensus       152 ~~~~~~~~~-----------------------------------------------------------------------  160 (260)
T cd08222         152 SRLLMGSCD-----------------------------------------------------------------------  160 (260)
T ss_pred             eeecCCCcc-----------------------------------------------------------------------
Confidence            866431000                                                                       


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                      ......|++.|+|||.+.+..++.++|+||||+++|+|+++   |...
T Consensus       161 --------------------------------~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~  208 (260)
T cd08222         161 --------------------------------LATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQ  208 (260)
T ss_pred             --------------------------------cccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence                                            00023467789999999888889999999999999999985   4433


Q ss_pred             HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          533 RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ..... ...+.....|......++.+.+++.+||..+|++||++.++++||||
T Consensus       209 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  260 (260)
T cd08222         209 NFLSV-VLRIVEGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILRNPFI  260 (260)
T ss_pred             cHHHH-HHHHHcCCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhhCCCC
Confidence            33322 22233333333334456788999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.93  E-value=5.1e-26  Score=256.32  Aligned_cols=248  Identities=19%  Similarity=0.227  Sum_probs=178.6

Q ss_pred             HhhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          216 VKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       216 ~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      .+...++.|.||++....    .+..++.|... ............+...+...+|+|++...+....+...+       
T Consensus        26 ~~lg~g~~g~v~~~~~~~----~~~~v~iK~~~-~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~-------   93 (292)
T cd06657          26 IKIGEGSTGIVCIATVKS----SGKLVAVKKMD-LRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELW-------   93 (292)
T ss_pred             HHcCCCCCeEEEEEEEcC----CCeEEEEEEec-ccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEE-------
Confidence            456667789999986622    24445554331 111122233344555677888999998766544322222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               ++|||+.|++|.+++...  .++...++.++.||+.+|.|||++||+|+||||+||+++.++.++++|||+
T Consensus        94 ---------lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~  162 (292)
T cd06657          94 ---------VVMEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGF  162 (292)
T ss_pred             ---------EEEecCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEccccc
Confidence                     389999999999988643  467778999999999999999999999999999999999999999999997


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      +.......                                                                        
T Consensus       163 ~~~~~~~~------------------------------------------------------------------------  170 (292)
T cd06657         163 CAQVSKEV------------------------------------------------------------------------  170 (292)
T ss_pred             ceeccccc------------------------------------------------------------------------
Confidence            75432100                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                     .......|+..|+|||.+.+..++.++|+|||||++|||+++   |...
T Consensus       171 -------------------------------~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~  219 (292)
T cd06657         171 -------------------------------PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  219 (292)
T ss_pred             -------------------------------ccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                                           000134578889999999888899999999999999999986   3332


Q ss_pred             HHHHHHHHhccccCCCC---CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhcc
Q 001366          533 RALAAAMSDLRDRILPP---SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEV  591 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~---~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~  591 (1092)
                      ... .....+.. .+|+   .....++.+.+|+.+||..+|.+||++.++|+||||.....+
T Consensus       220 ~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~~~~~~~~~~  279 (292)
T cd06657         220 PPL-KAMKMIRD-NLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPP  279 (292)
T ss_pred             CHH-HHHHHHHh-hCCcccCCcccCCHHHHHHHHHHHhCCcccCcCHHHHhcChHHhccCCC
Confidence            221 11112211 1222   233457889999999999999999999999999999876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.93  E-value=2.6e-26  Score=258.51  Aligned_cols=246  Identities=18%  Similarity=0.220  Sum_probs=170.3

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||+|....    .+..++.|........ ........+...+...+|||++.+......+...+           
T Consensus        13 g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   77 (294)
T PLN00009         13 GTYGVVYKARDRV----TNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLY-----------   77 (294)
T ss_pred             CCCEEEEEEEecC----CCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEE-----------
Confidence            3679999998632    2344555444221111 11123345566788889999998776654333222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc-CCcEEEecccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ-SNQVKYIGPIIQK  377 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~-~~~vkl~Dfg~~~  377 (1092)
                           .+|||+. ++|.+++.... ...+...+..++.||+.||+|||++||+||||||+||+++. .+.+|++|||+++
T Consensus        78 -----lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~  151 (294)
T PLN00009         78 -----LVFEYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLAR  151 (294)
T ss_pred             -----EEEeccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEccccccc
Confidence                 3799986 58888886543 33567788899999999999999999999999999999985 4579999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .....                                                                           
T Consensus       152 ~~~~~---------------------------------------------------------------------------  156 (294)
T PLN00009        152 AFGIP---------------------------------------------------------------------------  156 (294)
T ss_pred             ccCCC---------------------------------------------------------------------------
Confidence            53310                                                                           


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                  ....+...+++.|+|||.+.+ ..++.++|||||||++|+|+++   |....
T Consensus       157 ----------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~  208 (294)
T PLN00009        157 ----------------------------VRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDS  208 (294)
T ss_pred             ----------------------------ccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                        000113456888999999877 4579999999999999999997   33322


Q ss_pred             HHHHHHHhccc--cC--------------------CCC-----CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          534 ALAAAMSDLRD--RI--------------------LPP-----SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       534 ~~~~~~~~~~~--~~--------------------~p~-----~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      ...........  ..                    .++     .....++++.+|+.+||+.+|++||++.++|+||||.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~~~~~  288 (294)
T PLN00009        209 EIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEHEYFK  288 (294)
T ss_pred             HHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcCchHh
Confidence            22222211110  00                    000     0124567889999999999999999999999999998


Q ss_pred             hhhc
Q 001366          587 EFQE  590 (1092)
Q Consensus       587 ~~~~  590 (1092)
                      +.++
T Consensus       289 ~~~~  292 (294)
T PLN00009        289 DLGD  292 (294)
T ss_pred             HHhc
Confidence            8654

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.93  E-value=5.3e-26  Score=252.42  Aligned_cols=246  Identities=14%  Similarity=0.109  Sum_probs=167.8

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|.||+|.....-.. +..++.|+............-..+...++...|||++........+...+            
T Consensus        15 g~~g~vy~~~~~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~------------   81 (269)
T cd05065          15 GEFGEVCRGRLKLPGKR-EIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVM------------   81 (269)
T ss_pred             CCCCeEEEEEEecCCCC-ceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceE------------
Confidence            46799999886331111 12344444322211222233344556777889999998655533222222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          .+|||+.|++|.+++......++..+++.++.|++.||+|||++|++||||||+||+++.++.+|++|||+++...
T Consensus        82 ----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~  157 (269)
T cd05065          82 ----IITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLE  157 (269)
T ss_pred             ----EEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccc
Confidence                3799999999999998766667888999999999999999999999999999999999999999999999886543


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ......                                                                          
T Consensus       158 ~~~~~~--------------------------------------------------------------------------  163 (269)
T cd05065         158 DDTSDP--------------------------------------------------------------------------  163 (269)
T ss_pred             cCcccc--------------------------------------------------------------------------
Confidence            100000                                                                          


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERALA  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~  536 (1092)
                                              ..........+..|+|||.+.+..++.++|||||||++|||++ +   |.......
T Consensus       164 ------------------------~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~  219 (269)
T cd05065         164 ------------------------TYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQD  219 (269)
T ss_pred             ------------------------ccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHH
Confidence                                    0000001112456999999998899999999999999999885 4   32222211


Q ss_pred             HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          537 AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       ....+......+.....++.+.+++.+||.++|.+||++.+|+..
T Consensus       220 -~~~~i~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~  264 (269)
T cd05065         220 -VINAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVST  264 (269)
T ss_pred             -HHHHHHcCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence             111222211222334556788999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.93  E-value=5.3e-26  Score=251.02  Aligned_cols=246  Identities=19%  Similarity=0.169  Sum_probs=173.9

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||+|....    .+..++.|+....... ........+...+...+|++++.++.........+          
T Consensus        10 ~G~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~----------   75 (264)
T cd06626          10 GGTFGKVYTAVNLD----TGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVY----------   75 (264)
T ss_pred             cCCCcEEEEEEECC----CCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEE----------
Confidence            35779999987522    1344455444332222 23344445556677889999987666533222222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .++||++|++|.+++...+ .++...++.++.||+.||.|||++||+|+||||+||+++.++.+|++|||++..
T Consensus        76 ------lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~  148 (264)
T cd06626          76 ------IFMEYCSGGTLEELLEHGR-ILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVK  148 (264)
T ss_pred             ------EEEecCCCCcHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccc
Confidence                  3799999999999997654 467778999999999999999999999999999999999999999999998876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .......                                                                         
T Consensus       149 ~~~~~~~-------------------------------------------------------------------------  155 (264)
T cd06626         149 LKNNTTT-------------------------------------------------------------------------  155 (264)
T ss_pred             cCCCCCc-------------------------------------------------------------------------
Confidence            4411000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC---CCccccchhhhHHHHHHcCC---CCcH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV---CTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~---~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                .........++..|+|||.+.+..   ++.++|||||||++|||+++   |...
T Consensus       156 --------------------------~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~  209 (264)
T cd06626         156 --------------------------MGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSEL  209 (264)
T ss_pred             --------------------------ccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCC
Confidence                                      000011235677899999998866   89999999999999999986   3322


Q ss_pred             HHHHHHHHhccccCCC--CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          533 RALAAAMSDLRDRILP--PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p--~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .........+.....+  |.....++.+.+|+.+||+.+|.+||++.+++.|||+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~~~~~  264 (264)
T cd06626         210 DNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQHPFV  264 (264)
T ss_pred             cchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            1222222122222222  2233347888999999999999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.93  E-value=4.9e-26  Score=254.22  Aligned_cols=245  Identities=14%  Similarity=0.133  Sum_probs=172.5

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|+||+|...+.-+..+..++.|+..............++...+....|||++.++.....+..        .+   
T Consensus        16 ~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~--------~~---   84 (280)
T cd05043          16 EGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGE--------PP---   84 (280)
T ss_pred             ccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC--------CC---
Confidence            4578999999864311111344445544333233334445566667788899999987665443211        11   


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcC-------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEec
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARG-------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIG  372 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~-------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~D  372 (1092)
                          ..+++|+.+++|.++|....       ..++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|
T Consensus        85 ----~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d  160 (280)
T cd05043          85 ----FVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITD  160 (280)
T ss_pred             ----EEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECC
Confidence                13688999999999996532       3577889999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||+++.+......                                                                   
T Consensus       161 ~g~~~~~~~~~~~-------------------------------------------------------------------  173 (280)
T cd05043         161 NALSRDLFPMDYH-------------------------------------------------------------------  173 (280)
T ss_pred             CCCcccccCCceE-------------------------------------------------------------------
Confidence            9998765411000                                                                   


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---  528 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---  528 (1092)
                                                        .......++..|+|||.+.+..++.++|||||||++|||++ +   
T Consensus       174 ----------------------------------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p  219 (280)
T cd05043         174 ----------------------------------CLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTP  219 (280)
T ss_pred             ----------------------------------EeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCC
Confidence                                              00001123556999999998889999999999999999997 4   


Q ss_pred             CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          529 FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      |...... .....+.....++.....++.+.+++.+||+++|++|||+.++++
T Consensus       220 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  271 (280)
T cd05043         220 YVEIDPF-EMAAYLKDGYRLAQPINCPDELFAVMACCWALDPEERPSFSQLVQ  271 (280)
T ss_pred             cCcCCHH-HHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            4332222 222222222222333345678899999999999999999999986

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.93  E-value=6.4e-26  Score=253.84  Aligned_cols=249  Identities=15%  Similarity=0.080  Sum_probs=169.1

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|.||++....--...+..++.|.+... .......-.++...+...+|||++............           
T Consensus        13 g~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~-----------   80 (284)
T cd05081          13 GKGNFGSVELCRYDPLQDNTGEVVAVKKLQHS-TAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR-----------   80 (284)
T ss_pred             cCCCCceEEEEEecCCcCCCCcEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCC-----------
Confidence            34577999998642111122344555443221 222223334566678888999998765432211000           


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                         ...++|||+.|++|.+++......++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        81 ---~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~  157 (284)
T cd05081          81 ---NLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKV  157 (284)
T ss_pred             ---ceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCccccc
Confidence               01147999999999999977655678889999999999999999999999999999999999999999999998876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +......                                                                         
T Consensus       158 ~~~~~~~-------------------------------------------------------------------------  164 (284)
T cd05081         158 LPQDKEY-------------------------------------------------------------------------  164 (284)
T ss_pred             ccCCCcc-------------------------------------------------------------------------
Confidence            4310000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcH----HH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSE----RA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~----~~  534 (1092)
                                                 ........++..|+|||.+.+..++.++|||||||++|||+++....    ..
T Consensus       165 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~  217 (284)
T cd05081         165 ---------------------------YKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAE  217 (284)
T ss_pred             ---------------------------eeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchh
Confidence                                       00000111234599999999888999999999999999999852111    00


Q ss_pred             HH--------------HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          535 LA--------------AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       535 ~~--------------~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ..              .....+.....++.....++.+.+|+.+||.++|++|||+.+|++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~  279 (284)
T cd05081         218 FMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQ  279 (284)
T ss_pred             hhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHH
Confidence            00              0111122222333444567889999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.93  E-value=5.9e-26  Score=260.78  Aligned_cols=246  Identities=16%  Similarity=0.138  Sum_probs=169.4

Q ss_pred             ccccceeeeCCCCCc---cccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCC
Q 001366          220 LKGKGIVCRGPPLNA---FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      .+|.|.||++.....   .......++.|+..............++..++... .|||++.++.....+...+       
T Consensus        22 ~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~-------   94 (334)
T cd05100          22 EGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLY-------   94 (334)
T ss_pred             cccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceE-------
Confidence            346889998853210   01112234444443222222333445566667676 7999998766544333222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCe
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSF  360 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Ni  360 (1092)
                               .+|||+.+++|.++|....               ..+...+++.++.||+.||+|||++||+||||||+||
T Consensus        95 ---------lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Ni  165 (334)
T cd05100          95 ---------VLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNV  165 (334)
T ss_pred             ---------EEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceE
Confidence                     3799999999999997532               2356678889999999999999999999999999999


Q ss_pred             EEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccc
Q 001366          361 KLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIET  440 (1092)
Q Consensus       361 ll~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1092)
                      +++.++.+|++|||+++........                                                       
T Consensus       166 ll~~~~~~kL~Dfg~~~~~~~~~~~-------------------------------------------------------  190 (334)
T cd05100         166 LVTEDNVMKIADFGLARDVHNIDYY-------------------------------------------------------  190 (334)
T ss_pred             EEcCCCcEEECCcccceeccccccc-------------------------------------------------------
Confidence            9999999999999988764310000                                                       


Q ss_pred             cCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhH
Q 001366          441 ANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGV  520 (1092)
Q Consensus       441 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGv  520 (1092)
                                                                    .......++..|+|||++.+..++.++|||||||
T Consensus       191 ----------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  224 (334)
T cd05100         191 ----------------------------------------------KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGV  224 (334)
T ss_pred             ----------------------------------------------ccccCCCcCceEcCHHHhccCCcCchhhhHHHHH
Confidence                                                          0000122345699999999989999999999999


Q ss_pred             HHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          521 LFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       521 ll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      +||||++ +   |... ........+.....++.....+..+.+|+.+||+.+|.+||++.+++++.
T Consensus       225 il~el~~~g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l  290 (334)
T cd05100         225 LLWEIFTLGGSPYPGI-PVEELFKLLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDL  290 (334)
T ss_pred             HHHHHHhcCCCCCCCC-CHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHH
Confidence            9999997 3   3322 22223333333333333445577889999999999999999999998853

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.93  E-value=5.3e-26  Score=255.93  Aligned_cols=252  Identities=13%  Similarity=0.068  Sum_probs=170.7

Q ss_pred             HHHhhhcc--ccceeeeCCCCCc------------cccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCcccc
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNA------------FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGT  279 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (1092)
                      |.+.+.++  |.|.||++...+.            .......++.|+............-.++...+...+|||++.+..
T Consensus         7 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~   86 (296)
T cd05051           7 LNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLG   86 (296)
T ss_pred             CcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEE
Confidence            44444443  6789998765320            001122334444433222223333445666778889999988665


Q ss_pred             ceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC----------CCCCHHHHHHHHHHHHHHHHHhhhcC
Q 001366          280 AVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG----------HKGKRIECLYIFRQIVALVDYHHTQG  349 (1092)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~----------~~~~~~~~~~i~~qil~~l~~lHs~g  349 (1092)
                      ....+....                .+|||+.|++|.++|....          ..++...++.++.||+.||+|||++|
T Consensus        87 ~~~~~~~~~----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~  150 (296)
T cd05051          87 VCTVDPPLC----------------MIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLN  150 (296)
T ss_pred             EEecCCCcE----------------EEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            544332222                3799999999999996654          25778889999999999999999999


Q ss_pred             ccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccc
Q 001366          350 VTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSL  429 (1092)
Q Consensus       350 IvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (1092)
                      |+||||||+||+++.++.++++|||+++.+......                                            
T Consensus       151 i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~--------------------------------------------  186 (296)
T cd05051         151 FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYY--------------------------------------------  186 (296)
T ss_pred             ccccccchhceeecCCCceEEccccceeecccCcce--------------------------------------------
Confidence            999999999999999999999999988654310000                                            


Q ss_pred             ccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC
Q 001366          430 FPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC  509 (1092)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~  509 (1092)
                                                                               .......++..|+|||.+.+..+
T Consensus       187 ---------------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~  209 (296)
T cd05051         187 ---------------------------------------------------------RVQGRAPLPIRWMAWESVLLGKF  209 (296)
T ss_pred             ---------------------------------------------------------eecCcCCCCceecCHHHhhcCCC
Confidence                                                                     00002345677999999998889


Q ss_pred             CccccchhhhHHHHHHcCC-----CCcHHHHHHHHH--hc----cccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHH
Q 001366          510 TTSSNIYSLGVLFFELFGR-----FDSERALAAAMS--DL----RDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTRE  578 (1092)
Q Consensus       510 t~~sDIwSLGvll~ell~~-----f~~~~~~~~~~~--~~----~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e  578 (1092)
                      +.++|||||||++|||++.     |...........  ..    ......+.....++++.+|+.+||.++|.+|||+.+
T Consensus       210 ~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~e  289 (296)
T cd05051         210 TTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFRE  289 (296)
T ss_pred             CccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHH
Confidence            9999999999999999862     222111111111  11    111112222334578899999999999999999999


Q ss_pred             Hhhh
Q 001366          579 ILQS  582 (1092)
Q Consensus       579 iL~~  582 (1092)
                      |++.
T Consensus       290 l~~~  293 (296)
T cd05051         290 IHLF  293 (296)
T ss_pred             HHHH
Confidence            9763

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.93  E-value=4.5e-27  Score=255.39  Aligned_cols=196  Identities=17%  Similarity=0.216  Sum_probs=142.5

Q ss_pred             cccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccC
Q 001366          307 GSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASL  385 (1092)
Q Consensus       307 ~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~  385 (1092)
                      .-...|.++.++|+..+ ..++-..++.+.+||+++|.|||+.+++|-||||+|||+..+..++.-.-+...        
T Consensus       169 vfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~--------  240 (415)
T KOG0671|consen  169 VFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKV--------  240 (415)
T ss_pred             EEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCcc--------
Confidence            55667889999998754 457777899999999999999999999999999999999877766653332210        


Q ss_pred             CCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccC
Q 001366          386 DIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNA  465 (1092)
Q Consensus       386 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  465 (1092)
                                                                      +..+.......++=|||.++-+....      
T Consensus       241 ------------------------------------------------~~~r~~ks~~I~vIDFGsAtf~~e~h------  266 (415)
T KOG0671|consen  241 ------------------------------------------------CFIRPLKSTAIKVIDFGSATFDHEHH------  266 (415)
T ss_pred             ------------------------------------------------ceeccCCCcceEEEecCCcceeccCc------
Confidence                                                            00011111234456677554332111      


Q ss_pred             CCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH--HHHHHHH
Q 001366          466 GFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER--ALAAAMS  540 (1092)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~--~~~~~~~  540 (1092)
                                              +..+.|+.|+|||++.|..++.++||||+||||+||.+|   |.+.+  ++-+.|.
T Consensus       267 ------------------------s~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMe  322 (415)
T KOG0671|consen  267 ------------------------STIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMME  322 (415)
T ss_pred             ------------------------ceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHH
Confidence                                    256889999999999999999999999999999999998   54443  4445555


Q ss_pred             hccccCCCCC----------------------------------------CCCCC---hhHHHHHHhccccCCCCCCCHH
Q 001366          541 DLRDRILPPS----------------------------------------FLSEN---PKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       541 ~~~~~~~p~~----------------------------------------~~~~~---~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                      .+.+ ++|..                                        ....+   ..+.+|+.+||.+||.+|+|++
T Consensus       323 rIlG-p~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~  401 (415)
T KOG0671|consen  323 RILG-PIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLR  401 (415)
T ss_pred             HhhC-CCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHH
Confidence            4444 22211                                        01111   2367999999999999999999


Q ss_pred             HHhhhhhhhhhh
Q 001366          578 EILQSEVTNEFQ  589 (1092)
Q Consensus       578 eiL~~~~~~~~~  589 (1092)
                      |+|.||||+...
T Consensus       402 EAL~HpFF~~~~  413 (415)
T KOG0671|consen  402 EALSHPFFARLT  413 (415)
T ss_pred             HHhcCHHhhcCC
Confidence            999999998653

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.93  E-value=2.1e-25  Score=254.30  Aligned_cols=247  Identities=15%  Similarity=0.110  Sum_probs=176.4

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |...+.++  +.|.||++...+    .+..++.|++.......  ....-..+...+...+|||++........+...+ 
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~----~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~-  101 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVR----TNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAW-  101 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcC----CCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEE-
Confidence            44444443  679999987632    24455555543222211  2223344566777889999987666544332222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     .+|+|+.| +|.+++......++..++..++.||+.||.|||++||+||||||+||+++.++.+|
T Consensus       102 ---------------lv~e~~~g-~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~k  165 (317)
T cd06635         102 ---------------LVMEYCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVK  165 (317)
T ss_pred             ---------------EEEeCCCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEE
Confidence                           37999975 78888876666788889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||++.....                                                                    
T Consensus       166 l~dfg~~~~~~~--------------------------------------------------------------------  177 (317)
T cd06635         166 LADFGSASIASP--------------------------------------------------------------------  177 (317)
T ss_pred             EecCCCccccCC--------------------------------------------------------------------
Confidence            999997654220                                                                    


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc---CCCCCccccchhhhHHHHHHc
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS---GGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~---~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                             .....|+..|+|||.+.   .+.++.++|||||||++|||+
T Consensus       178 ---------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~  218 (317)
T cd06635         178 ---------------------------------------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA  218 (317)
T ss_pred             ---------------------------------------cccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHH
Confidence                                                   00235677899999984   356899999999999999999


Q ss_pred             CCCC---cHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GRFD---SERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~f~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ++..   .................+......++.+.+|+.+||+.+|.+||++.++++|+|+...
T Consensus       219 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~  283 (317)
T cd06635         219 ERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRE  283 (317)
T ss_pred             hCCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhcc
Confidence            8632   2222222222222222222333456788999999999999999999999999998653

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.93  E-value=3.4e-26  Score=263.84  Aligned_cols=250  Identities=17%  Similarity=0.219  Sum_probs=173.4

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||+|....    .+..++.|+..... .........++...++...|||++.+......+....    .     
T Consensus        25 ~g~~g~vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~----~-----   91 (343)
T cd07851          25 SGAYGQVCSAFDTK----TGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLE----D-----   91 (343)
T ss_pred             cCCceEEEEEEECC----CCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccc----c-----
Confidence            34789999998732    24455555442211 1222233345666788889999987655433222100    0     


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                       +.....+++|+ |++|.+++...  .++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|||++..
T Consensus        92 -~~~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~  167 (343)
T cd07851          92 -FQDVYLVTHLM-GADLNNIVKCQ--KLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARH  167 (343)
T ss_pred             -cccEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEcccccccc
Confidence             00011356666 77999999763  578889999999999999999999999999999999999999999999998765


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ....                                                                            
T Consensus       168 ~~~~----------------------------------------------------------------------------  171 (343)
T cd07851         168 TDDE----------------------------------------------------------------------------  171 (343)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            3200                                                                            


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                    .....++.+|+|||.+.+ ..++.++|||||||++|||+++   |.....
T Consensus       172 ------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~  221 (343)
T cd07851         172 ------------------------------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDH  221 (343)
T ss_pred             ------------------------------ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh
Confidence                                          013356788999999876 4678999999999999999986   433322


Q ss_pred             HHHHHHhccccC-----------------------------CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAAMSDLRDRI-----------------------------LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~~~~~~~~~-----------------------------~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .......+....                             ++..+...++++.+|+.+||+++|.+|||+.+|++||||
T Consensus       222 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~  301 (343)
T cd07851         222 IDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAHPYL  301 (343)
T ss_pred             HHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcCCCc
Confidence            221111111000                             011123457889999999999999999999999999999


Q ss_pred             hhhhccc
Q 001366          586 NEFQEVC  592 (1092)
Q Consensus       586 ~~~~~~~  592 (1092)
                      .......
T Consensus       302 ~~~~~~~  308 (343)
T cd07851         302 AEYHDPE  308 (343)
T ss_pred             cccCCCc
Confidence            8765444

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.93  E-value=6.3e-26  Score=250.87  Aligned_cols=239  Identities=15%  Similarity=0.169  Sum_probs=173.3

Q ss_pred             ccccceeeeCCCCCcccccccccccccccc-ccCchh-hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVT-TTMPSD-AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||+|...    ..+..++.|.... ...... ...-.++...++..+|++++..+.....+...+         
T Consensus        12 ~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~---------   78 (267)
T cd08224          12 KGQFSVVYKAICL----LDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELN---------   78 (267)
T ss_pred             cCCceEEEEEEEc----CCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEE---------
Confidence            3468999999874    2244555544321 112222 233345566778889999987666544322222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                             .+|||++|++|.+++..   .+..++...++.++.||+.||.|||++||+||||||+||+++.++.++++|||
T Consensus        79 -------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~  151 (267)
T cd08224          79 -------IVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLG  151 (267)
T ss_pred             -------EEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccc
Confidence                   37999999999999954   23457888999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.+....                                                                       
T Consensus       152 ~~~~~~~~~-----------------------------------------------------------------------  160 (267)
T cd08224         152 LGRFFSSKT-----------------------------------------------------------------------  160 (267)
T ss_pred             eeeeccCCC-----------------------------------------------------------------------
Confidence            876533100                                                                       


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCc---
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDS---  531 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~---  531 (1092)
                                                      .......++..|+|||.+.+..++.++|||||||++|+|+++..+   
T Consensus       161 --------------------------------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  208 (267)
T cd08224         161 --------------------------------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG  208 (267)
T ss_pred             --------------------------------cccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCccc
Confidence                                            000133577889999999988899999999999999999986322   


Q ss_pred             -HHHHHHHHHhccccCCCCCCC-CCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          532 -ERALAAAMSDLRDRILPPSFL-SENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       532 -~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                       ..........+.....++... ..+..+.+++.+||+++|++||++.+|++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~  260 (267)
T cd08224         209 DKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQ  260 (267)
T ss_pred             CCccHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence             122233333444444444333 45678899999999999999999999886

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.93  E-value=7.1e-26  Score=249.17  Aligned_cols=237  Identities=14%  Similarity=0.115  Sum_probs=167.9

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.+  +|.|.||+|...+      ..++.|+....   .....-.++...+...+|||++........+..    
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~------~~~~iK~~~~~---~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~----   73 (254)
T cd05083           7 KLTLGEIIGEGEFGAVLQGEYTG------QKVAVKNIKCD---VTAQAFLEETAVMTKLHHKNLVRLLGVILHNGL----   73 (254)
T ss_pred             HceeeeeeccCCCCceEecccCC------CceEEEeecCc---chHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCc----
Confidence            34444433  4789999987633      33444433211   111223445566778899999987655432221    


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                   -.+|||+.|++|.+++.... ..++...++.++.||+.||.|||++|++||||||+||+++.++.+|
T Consensus        74 -------------~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~k  140 (254)
T cd05083          74 -------------YIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAK  140 (254)
T ss_pred             -------------EEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEE
Confidence                         13799999999999997643 3577878999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++......                                                                  
T Consensus       141 l~Dfg~~~~~~~~~------------------------------------------------------------------  154 (254)
T cd05083         141 VSDFGLARVGSMGV------------------------------------------------------------------  154 (254)
T ss_pred             ECCCccceeccccC------------------------------------------------------------------
Confidence            99999876422000                                                                  


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~  528 (1092)
                                                              .....+..|+|||.+.+..++.++|+|||||++|||++ +
T Consensus       155 ----------------------------------------~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g  194 (254)
T cd05083         155 ----------------------------------------DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYG  194 (254)
T ss_pred             ----------------------------------------CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCC
Confidence                                                    01112345999999998899999999999999999996 4


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                         |....... ....+.....++.....++.+.+|+.+||..+|.+||++.++++.
T Consensus       195 ~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  250 (254)
T cd05083         195 RAPYPKMSLKE-VKECVEKGYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLREK  250 (254)
T ss_pred             CCCCccCCHHH-HHHHHhCCCCCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence               33322211 122222222222334557888999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=4.8e-25  Score=242.72  Aligned_cols=261  Identities=21%  Similarity=0.265  Sum_probs=211.9

Q ss_pred             ecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc----------eEEEeeccCccEEEEEEecCCCCEEEEEeCCC
Q 001366          825 MSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ----------TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC  894 (1092)
Q Consensus       825 ~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~----------~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg  894 (1092)
                      +.|.+.|+.+...|.+..++|+.+..+.|.|||..+..          .-..+.+|.+.-.+++|++.....|++|+.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            45889999999999989999999999999999986532          11278899998899999998888999999999


Q ss_pred             cEEEEecCCCce-------eeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCC-CCcceEEecCCCCCeEEEEE
Q 001366          895 SVKLWNINEKNS-------LATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRN-ARAPWCVLAGHEKAVSYVKF  965 (1092)
Q Consensus       895 ~I~iWDl~~~~~-------l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~-~~~~~~~l~~H~~~V~~v~f  965 (1092)
                      +|++||+.....       ...+. |...|..++|++....+|++.+.|+.+.|||+|+ ..++.....+|.+.|.|++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            999999985432       22233 6778999999998888999999999999999996 44466778899999999999


Q ss_pred             c--CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecC-CCEEEEEecCCcEEEEeCCCCCcee
Q 001366          966 L--DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTA-DGYIACGSESNEVYAYHRSLPMPIT 1042 (1092)
Q Consensus       966 s--~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~I~Iwd~~~~~~i~ 1042 (1092)
                      +  ++..|||||.|++|.+||+|+.       ..++.++.+|...|..|.|||+ ...||+++.|+.+.|||+..-...+
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL-------~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNL-------NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhc-------ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence            8  6667999999999999999964       3578999999999999999997 4588999999999999987533222


Q ss_pred             eeeccccCCCCCccccCCCCCCEEEEEEeCCCC-EEEEEecCCeEEEEEcC
Q 001366         1043 SYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD-MVVAANSSGCIKVLQMV 1092 (1092)
Q Consensus      1043 ~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~-~Lasgs~DG~V~vW~lv 1092 (1092)
                      .-..+.-.+.....+-.||...|+.+.|+|... .++|.+.|+.+.||++.
T Consensus       354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            211111111111123357899999999999765 56788999999999973

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.93  E-value=1.2e-26  Score=264.14  Aligned_cols=239  Identities=16%  Similarity=0.152  Sum_probs=172.4

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhh-hhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAA-GAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+-+|.||||..       -..+|+|++--.+.-.++..+|+ +++.++.-+|.||+....+           +...+.
T Consensus       401 GsGsFGtV~Rg~w-------hGdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~-----------~~~p~~  462 (678)
T KOG0193|consen  401 GSGSFGTVYRGRW-------HGDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGA-----------CMNPPL  462 (678)
T ss_pred             ccccccceeeccc-------ccceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehh-----------hcCCce
Confidence            3445899999999       55677777754444334555555 4555666699998853333           222211


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                      +      ++...|+|-+|+.+|.-...+++....+.|++||+.|++|||.++|||||||..||+|..++.|||.||||+.
T Consensus       463 A------IiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLat  536 (678)
T KOG0193|consen  463 A------IITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLAT  536 (678)
T ss_pred             e------eeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEeccccee
Confidence            1      3678899999999997766788888999999999999999999999999999999999999999999999985


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .-.                 |. .+                                                       
T Consensus       537 vk~-----------------~w-~g-------------------------------------------------------  543 (678)
T KOG0193|consen  537 VKT-----------------RW-SG-------------------------------------------------------  543 (678)
T ss_pred             eee-----------------ee-cc-------------------------------------------------------
Confidence            422                 00 00                                                       


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC---CCCCccccchhhhHHHHHHcCC---CCc
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG---GVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~---~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                  ...+....|..-|||||+++.   .+|++.+||||+||++|||+++   |..
T Consensus       544 ----------------------------~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi  595 (678)
T KOG0193|consen  544 ----------------------------EQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSI  595 (678)
T ss_pred             ----------------------------ccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCC
Confidence                                        000012234556999999976   6799999999999999999996   553


Q ss_pred             HHHHHHHHHhccccCCCC--CCCCCCh-hHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          532 ERALAAAMSDLRDRILPP--SFLSENP-KEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~~p~--~~~~~~~-~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ......++..-+....|.  ......| ++.+|+..||.+++++||.+.+||..
T Consensus       596 ~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~  649 (678)
T KOG0193|consen  596 QNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSK  649 (678)
T ss_pred             CChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHH
Confidence            322333333333322222  2223345 77899999999999999999999984

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.93  E-value=5.2e-26  Score=249.35  Aligned_cols=241  Identities=20%  Similarity=0.201  Sum_probs=178.1

Q ss_pred             cccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|.||++....    .+..++.|+...... .........+...++..+|||++...+.........           
T Consensus        11 g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~-----------   75 (258)
T cd08215          11 GSFGKVYLVRRKS----DGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLC-----------   75 (258)
T ss_pred             CCCeEEEEEEEcC----CCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEE-----------
Confidence            5779999988742    133444444432222 233344555666777888999887665543321111           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR---GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~---~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                           ++++|++|++|.+++...   +..++..++..++.||+.||.|||++|++|+||+|+||+++.++.++++|||.+
T Consensus        76 -----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~  150 (258)
T cd08215          76 -----IVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGIS  150 (258)
T ss_pred             -----EEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccce
Confidence                 379999999999999765   366888899999999999999999999999999999999999999999999987


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      .......                                                                         
T Consensus       151 ~~~~~~~-------------------------------------------------------------------------  157 (258)
T cd08215         151 KVLSSTV-------------------------------------------------------------------------  157 (258)
T ss_pred             eecccCc-------------------------------------------------------------------------
Confidence            6543100                                                                         


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    .......|++.|+|||.+.+..++.++|+||||+++|+|+++   |....
T Consensus       158 ------------------------------~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~  207 (258)
T cd08215         158 ------------------------------DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN  207 (258)
T ss_pred             ------------------------------ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc
Confidence                                          000134578889999999988899999999999999999986   33322


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                       ............+++.....+..+.+++.+||..+|++||++.++|+||||
T Consensus       208 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  258 (258)
T cd08215         208 -LLELALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQSPFI  258 (258)
T ss_pred             -HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCCCC
Confidence             222333333333444444567889999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.93  E-value=7.4e-26  Score=250.06  Aligned_cols=236  Identities=16%  Similarity=0.061  Sum_probs=166.6

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|.||++...+     ...++.|+......  ....-.++...+...+||+++.+......+          ..  
T Consensus        15 g~g~~~~v~~~~~~~-----~~~~~lK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~----------~~--   75 (260)
T cd05069          15 GQGCFGEVWMGTWNG-----TTKVAIKTLKPGTM--MPEAFLQEAQIMKKLRHDKLVPLYAVVSEE----------PI--   75 (260)
T ss_pred             cCcCCCeEEEEEEcC-----CceEEEEEcccCCc--cHHHHHHHHHHHHhCCCCCeeeEEEEEcCC----------Cc--
Confidence            346789999987643     22344443322221  112223455677788999988754332110          01  


Q ss_pred             cccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                           ..+|+|+.|++|.+++... +..++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++
T Consensus        76 -----~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~  150 (260)
T cd05069          76 -----YIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLAR  150 (260)
T ss_pred             -----EEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccce
Confidence                 1389999999999999653 3457787899999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .......                                                                         
T Consensus       151 ~~~~~~~-------------------------------------------------------------------------  157 (260)
T cd05069         151 LIEDNEY-------------------------------------------------------------------------  157 (260)
T ss_pred             EccCCcc-------------------------------------------------------------------------
Confidence            5431000                                                                         


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~  533 (1092)
                                                   .......++..|+|||.+.+..++.++|||||||++|||++ +   |....
T Consensus       158 -----------------------------~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  208 (260)
T cd05069         158 -----------------------------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMV  208 (260)
T ss_pred             -----------------------------cccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence                                         00001234566999999988889999999999999999997 4   43322


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ... .+..+.....++.....++.+.+|+.+||+++|.+||+++++++
T Consensus       209 ~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  255 (260)
T cd05069         209 NRE-VLEQVERGYRMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQS  255 (260)
T ss_pred             HHH-HHHHHHcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            222 22233333333334455778899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=9.9e-27  Score=245.78  Aligned_cols=248  Identities=17%  Similarity=0.199  Sum_probs=181.5

Q ss_pred             hHHHhhhcc----ccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          213 EFFVKTTLK----GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       213 ~~~~~~~~~----g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      .|.+.+.|+    ||.+.||-...+.+++      .||.--+-+..  ..+-...+-+.|...+||-...+.-..+.+.-
T Consensus       169 dFdfLKvLGkGTFGKVIL~rEKat~k~YA------iKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~dr  242 (516)
T KOG0690|consen  169 DFDFLKVLGKGTFGKVILCREKATGKLYA------IKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDR  242 (516)
T ss_pred             hhhHHHHhcCCccceEEEEeecccCceee------hhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCce
Confidence            355555554    6777888777666555      33321111111  11223444556677788876654433332222


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                                 .|     .+|||..||.|.-.|.+. +.+++..++.+-..|+.||.|||+++||.||||-+|+||+.+|
T Consensus       243 -----------lC-----FVMeyanGGeLf~HLsre-r~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDG  305 (516)
T KOG0690|consen  243 -----------LC-----FVMEYANGGELFFHLSRE-RVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDG  305 (516)
T ss_pred             -----------EE-----EEEEEccCceEeeehhhh-hcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCC
Confidence                       22     289999999999888664 4677778999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      ++||+|||++++-..                                                                 
T Consensus       306 HIKitDFGLCKE~I~-----------------------------------------------------------------  320 (516)
T KOG0690|consen  306 HIKITDFGLCKEEIK-----------------------------------------------------------------  320 (516)
T ss_pred             ceEeeecccchhccc-----------------------------------------------------------------
Confidence            999999999987320                                                                 


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                        +|                                    ...++.||||.|.|||+|.+..|+.++|.|.+||++|||+
T Consensus       321 --~g------------------------------------~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMm  362 (516)
T KOG0690|consen  321 --YG------------------------------------DTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMM  362 (516)
T ss_pred             --cc------------------------------------ceeccccCChhhcCchhhccccccceeehhhhhHHHHHHH
Confidence              00                                    1123789999999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      ||   |...++......++...+..|..  .+|+...|+..+|.+||.+|..     |.||.+|+||...
T Consensus       363 CGRLPFyn~dh~kLFeLIl~ed~kFPr~--ls~eAktLLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v  430 (516)
T KOG0690|consen  363 CGRLPFYNKDHEKLFELILMEDLKFPRT--LSPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASV  430 (516)
T ss_pred             hccCcccccchhHHHHHHHhhhccCCcc--CCHHHHHHHHHHhhcChHhhcCCCchhHHHHHhhhhhccC
Confidence            96   65554433333334333333333  3899999999999999999964     6899999999764

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.93  E-value=4.4e-26  Score=262.26  Aligned_cols=253  Identities=19%  Similarity=0.244  Sum_probs=174.1

Q ss_pred             cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|+||++....    ++..++.|...... ..........+..++...+|||++.+.+.........    .      
T Consensus        16 G~~~~vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~----~------   81 (337)
T cd07858          16 GAYGIVCSAKNSE----TNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREA----F------   81 (337)
T ss_pred             CCCeEEEEEEecC----CCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccc----c------
Confidence            5789999988632    34555554432211 1112233445666778889999998665433211000    0      


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                       ...-.+++|+. ++|.++++..+ .++...++.++.||+.||.|||++||+||||||+||+++.++.+|++|||+++..
T Consensus        82 -~~~~lv~e~~~-~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~  158 (337)
T cd07858          82 -NDVYIVYELMD-TDLHQIIRSSQ-TLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTT  158 (337)
T ss_pred             -CcEEEEEeCCC-CCHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCcccccc
Confidence             00123788885 68999997654 4777799999999999999999999999999999999999999999999988653


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       159 ~~~~----------------------------------------------------------------------------  162 (337)
T cd07858         159 SEKG----------------------------------------------------------------------------  162 (337)
T ss_pred             CCCc----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                 .......++.+|+|||.+.+ ..++.++|||||||++|+|+++   |......
T Consensus       163 ---------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~  215 (337)
T cd07858         163 ---------------------------DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYV  215 (337)
T ss_pred             ---------------------------ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChH
Confidence                                       00013457888999998875 5689999999999999999986   3222110


Q ss_pred             --HHHHHh------------------------ccccC---CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          536 --AAAMSD------------------------LRDRI---LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       536 --~~~~~~------------------------~~~~~---~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                        ......                        +....   +.......++++.+|+.+||+++|++|||+.++|+||||.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~  295 (337)
T cd07858         216 HQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLA  295 (337)
T ss_pred             HHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchh
Confidence              000000                        00000   0111335678889999999999999999999999999998


Q ss_pred             hhhccch
Q 001366          587 EFQEVCA  593 (1092)
Q Consensus       587 ~~~~~~~  593 (1092)
                      .......
T Consensus       296 ~~~~~~~  302 (337)
T cd07858         296 SLHDPSD  302 (337)
T ss_pred             hhcCccc
Confidence            7655543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=5.2e-24  Score=253.38  Aligned_cols=234  Identities=15%  Similarity=0.191  Sum_probs=184.1

Q ss_pred             ecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          775 FNNSANVICSISFDR-DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       775 l~~h~~~V~sl~fsp-dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      +.+|.+.|.+++|+| ++++||+|+.|++|+|||+.................+|...|.+++|+|+..++|++|+.|++|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            668999999999999 8899999999999999998752111111112234567999999999999856899999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecC-C-ceEEEEEccCCCeEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI-A-NVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~-~-~V~sl~fsp~~~~~lat  931 (1092)
                      +|||+.+++.+..+.+|...|.+++|+| ++.+|++|+.|++|+|||+++++.+.++..+ . .+..+.|.+++..++++
T Consensus       151 rIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        151 NVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             EEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence            9999999999999999999999999999 8999999999999999999999988887743 3 34577899987655555


Q ss_pred             E---ECCCeEEEEEcCCCCcceEEecCCC-CCeEEEEEc-CCCEEEEEE-CCCeEEEEEcCCCCCCCCCCCceeEEEc-C
Q 001366          932 G---SADYRTYCYDLRNARAPWCVLAGHE-KAVSYVKFL-DSGTLVTAS-TDNKLKLWDLKRTSHTGPSTNACSLTFS-G 1004 (1092)
Q Consensus       932 g---s~Dg~I~vwDlr~~~~~~~~l~~H~-~~V~~v~fs-~~~~L~Sgs-~Dg~I~vWDl~~~~~~~~~~~~~~~~l~-~ 1004 (1092)
                      |   +.|+.|++||+++...++.....+. ..+....|+ +++.|++++ .|+.|++||+.+.        ..+.... .
T Consensus       230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~--------~~~~~~~~~  301 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE--------RLTFCSSYS  301 (493)
T ss_pred             ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC--------ceEEEeecc
Confidence            5   2489999999998776666555443 345555666 667787777 5999999999843        3333332 2


Q ss_pred             CCCCeEEEEEecC
Q 001366         1005 HTNEKNFVGLSTA 1017 (1092)
Q Consensus      1005 h~~~V~~v~~spd 1017 (1092)
                      +..++..++|.|.
T Consensus       302 s~~~~~g~~~~pk  314 (493)
T PTZ00421        302 SVEPHKGLCMMPK  314 (493)
T ss_pred             CCCCCcceEeccc
Confidence            4556778888885

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=4.2e-24  Score=225.00  Aligned_cols=273  Identities=17%  Similarity=0.278  Sum_probs=221.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      ...+.|+++.|+|.++.|+++++||++++|++...        .....+.|..++++++|.+  ...+++|+.||.|+.+
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~   80 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------SLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRY   80 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--------hhhhheecCCceeeeeccC--CceEEEeccCceEEEE
Confidence            34778999999999999999999999999998752        2334556899999999998  4789999999999999


Q ss_pred             ECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCC
Q 001366          857 DACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADY  936 (1092)
Q Consensus       857 D~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg  936 (1092)
                      |+.+++.... ..|...|.||.+++ ....+++||+|++|++||.+....+.++.....|.|+....   +.|++|+.|.
T Consensus        81 Dln~~~~~~i-gth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g---~~LvVg~~~r  155 (323)
T KOG1036|consen   81 DLNTGNEDQI-GTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG---NRLVVGTSDR  155 (323)
T ss_pred             EecCCcceee-ccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccC---CEEEEeecCc
Confidence            9998876544 46999999999998 66789999999999999999988888888888999998863   4788999999


Q ss_pred             eEEEEEcCCCCcceEE-ecCCCCCeEEEEEcC-CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCC-------
Q 001366          937 RTYCYDLRNARAPWCV-LAGHEKAVSYVKFLD-SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTN------- 1007 (1092)
Q Consensus       937 ~I~vwDlr~~~~~~~~-l~~H~~~V~~v~fs~-~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~------- 1007 (1092)
                      .|.+||+|+...+... ...-+-.++||++.| +.-++++|.||.|.+=.+.....    .....+.|+.|..       
T Consensus       156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~----~~skkyaFkCHr~~~~~~~~  231 (323)
T KOG1036|consen  156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE----AQSKKYAFKCHRLSEKDTEI  231 (323)
T ss_pred             eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchH----HhhhceeEEeeecccCCceE
Confidence            9999999987765422 123455788998874 44578899999998877764321    1233456666643       


Q ss_pred             --CeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec
Q 001366         1008 --EKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS 1082 (1092)
Q Consensus      1008 --~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~ 1082 (1092)
                        +|++++|+|-.+.+|+|+.||.|-+||....+.+..+.              .-...|.+++|+.+|..||.|++
T Consensus       232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~--------------~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA--------------KYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc--------------CCCCceEEEEeccCCCeEEEEec
Confidence              68999999998899999999999999988777665443              12346999999999999999874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.1e-24  Score=246.78  Aligned_cols=273  Identities=19%  Similarity=0.247  Sum_probs=226.1

Q ss_pred             ccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccccc
Q 001366          741 IQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYY  820 (1092)
Q Consensus       741 ~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~  820 (1092)
                      +|+....+.......+-+|+....++......     +...|+++.|+++|.+||+|..+|.|.|||.....      ..
T Consensus       184 dWss~n~laValg~~vylW~~~s~~v~~l~~~-----~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k------~~  252 (484)
T KOG0305|consen  184 DWSSANVLAVALGQSVYLWSASSGSVTELCSF-----GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK------KT  252 (484)
T ss_pred             hcccCCeEEEEecceEEEEecCCCceEEeEec-----CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc------cc
Confidence            46766677777778899999877665544332     28899999999999999999999999999986521      11


Q ss_pred             ceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEE-eeccCccEEEEEEecCCCCEEEEEeCCCcEEEE
Q 001366          821 PAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSH-YIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW  899 (1092)
Q Consensus       821 ~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~-l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iW  899 (1092)
                      +.....|...|.|++|+.   ..+.+|+.|+.|..+|+...+.... +.+|...|+.++|++ ++.++|+|+.|+.+.||
T Consensus       253 ~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iw  328 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIW  328 (484)
T ss_pred             ccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEec
Confidence            122223899999999994   5899999999999999998875444 889999999999999 99999999999999999


Q ss_pred             ecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEE--CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEE--
Q 001366          900 NINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGS--ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVT--  973 (1092)
Q Consensus       900 Dl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs--~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~S--  973 (1092)
                      |.....++..+. |.+.|..++|+|....+||+|+  .|++|++||..++......  .-...|+.|.|+ ..+.|++  
T Consensus       329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v--dtgsQVcsL~Wsk~~kEi~sth  406 (484)
T KOG0305|consen  329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV--DTGSQVCSLIWSKKYKELLSTH  406 (484)
T ss_pred             cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc--ccCCceeeEEEcCCCCEEEEec
Confidence            997777776665 8899999999999888999975  6999999999987643222  235679999999 4555665  


Q ss_pred             EECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCC
Q 001366          974 ASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLP 1038 (1092)
Q Consensus       974 gs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~ 1038 (1092)
                      |..++.|.||+..        +...+..+.+|+..|..+++||||..|++|+.|.++++|++-..
T Consensus       407 G~s~n~i~lw~~p--------s~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  407 GYSENQITLWKYP--------SMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCCCcEEEEecc--------ccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            4467889999998        45678899999999999999999999999999999999997654

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.93  E-value=9.2e-26  Score=247.83  Aligned_cols=243  Identities=17%  Similarity=0.164  Sum_probs=173.3

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|+||++...+.-......++.|+...............+..++....|++++.++.....+...+           
T Consensus         9 ~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~-----------   77 (258)
T smart00219        9 EGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLM-----------   77 (258)
T ss_pred             cCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeE-----------
Confidence            357899999988552211124445555433222212333444556667779999988766544332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHK-GKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~-~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .+|+|+.|++|.+++...... ++...++.++.||+.||.|||++||+||||||+||+++.++.++++|||+++.
T Consensus        78 -----~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~  152 (258)
T smart00219       78 -----IVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRD  152 (258)
T ss_pred             -----EEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCcee
Confidence                 379999999999999765443 78889999999999999999999999999999999999999999999998876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .......                                                                         
T Consensus       153 ~~~~~~~-------------------------------------------------------------------------  159 (258)
T smart00219      153 LYDDDYY-------------------------------------------------------------------------  159 (258)
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            4411000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~  534 (1092)
                                                 ..  ....++..|+|||.+.+..++.++|||||||++|||++ +   |... .
T Consensus       160 ---------------------------~~--~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~-~  209 (258)
T smart00219      160 ---------------------------KK--KGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGM-S  209 (258)
T ss_pred             ---------------------------cc--ccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCC-C
Confidence                                       00  01125677999999988889999999999999999997 3   3222 2


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      .......+.....++.....+..+.+++.+||.++|++|||+.++++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      210 NEEVLEYLKKGYRLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVE  256 (258)
T ss_pred             HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHh
Confidence            22223333333333334446788999999999999999999999986

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.93  E-value=7.4e-26  Score=249.03  Aligned_cols=236  Identities=17%  Similarity=0.137  Sum_probs=166.4

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|.||++...+     +..++.|+.......  ...-..+...+....||+++.++.........+            
T Consensus        15 g~~g~v~~~~~~~-----~~~~~~k~~~~~~~~--~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~------------   75 (256)
T cd05112          15 GQFGLVWLGYWLE-----KRKVAIKTIREGAMS--EEDFIEEAQVMMKLSHPKLVQLYGVCTERSPIC------------   75 (256)
T ss_pred             cccceEEEEEEeC-----CCeEEEEECCCCCCC--HHHHHHHHHHHHhCCCCCeeeEEEEEccCCceE------------
Confidence            4679999987642     334455444322221  222344566777889999887655433222111            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          .+|+|+.|++|.+++......++...++.++.|++.+|+|||++||+||||||+||+++.++.+|++|||+++...
T Consensus        76 ----~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~  151 (256)
T cd05112          76 ----LVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVL  151 (256)
T ss_pred             ----EEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecc
Confidence                3899999999999997765567787899999999999999999999999999999999999999999999886543


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ....                                                                            
T Consensus       152 ~~~~----------------------------------------------------------------------------  155 (256)
T cd05112         152 DDQY----------------------------------------------------------------------------  155 (256)
T ss_pred             cCcc----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERALA  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~  536 (1092)
                                                .......++..|+|||.+.+..++.++|||||||++|||++ +   |..... .
T Consensus       156 --------------------------~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-~  208 (256)
T cd05112         156 --------------------------TSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSN-S  208 (256)
T ss_pred             --------------------------cccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCH-H
Confidence                                      00001223557999999998889999999999999999997 4   332221 2


Q ss_pred             HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          537 AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .....+.....+......+..+.+|+.+||+.+|.+||++.++++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~  254 (256)
T cd05112         209 EVVETINAGFRLYKPRLASQSVYELMQHCWKERPEDRPSFSLLLHQ  254 (256)
T ss_pred             HHHHHHhCCCCCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHh
Confidence            2222222211111112246788999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.93  E-value=9.8e-26  Score=248.37  Aligned_cols=230  Identities=15%  Similarity=0.117  Sum_probs=163.3

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|+||++...      +..++.|....   +.....-..+..+++...|++++............             
T Consensus        17 g~~~~v~~~~~~------~~~~~~k~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~-------------   74 (256)
T cd05082          17 GEFGDVMLGDYR------GNKVAVKCIKN---DATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG-------------   74 (256)
T ss_pred             cCCCeEEEEEEc------CCcEEEEEeCC---CchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCc-------------
Confidence            367899998653      23334433321   11122234455667788899988766543322111             


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGH-KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~-~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                        ...+|||++|++|.++++..+. .++...++.++.||+.||.|||++||+||||||+||+++.++.+|++|||+++..
T Consensus        75 --~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~  152 (256)
T cd05082          75 --LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEA  152 (256)
T ss_pred             --eEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceec
Confidence              1137999999999999976543 4677789999999999999999999999999999999999999999999987653


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       153 ~~~~----------------------------------------------------------------------------  156 (256)
T cd05082         153 SSTQ----------------------------------------------------------------------------  156 (256)
T ss_pred             cccC----------------------------------------------------------------------------
Confidence            2100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                    ....++..|+|||.+.+..++.++|||||||++|||++ +   |... ..
T Consensus       157 ------------------------------~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~-~~  205 (256)
T cd05082         157 ------------------------------DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI-PL  205 (256)
T ss_pred             ------------------------------CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCC-CH
Confidence                                          01122346999999998889999999999999999996 4   3322 12


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ......+.....+......++.+.+|+.+||+.+|++|||+.++++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  251 (256)
T cd05082         206 KDVVPRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLRE  251 (256)
T ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            2222222222222333445788899999999999999999999976

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.93  E-value=7.8e-26  Score=247.79  Aligned_cols=246  Identities=17%  Similarity=0.121  Sum_probs=179.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|.||+|...+    .+..++.|+...... ........++...++...|||++.+.........       ...  
T Consensus        10 ~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-------~~~--   76 (260)
T cd06606          10 RGSFGSVYLALDKD----TGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEK-------NTL--   76 (260)
T ss_pred             ecCceEEEEEEECC----CCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCC-------CeE--
Confidence            45789999998742    244455554433222 1233444556667788889999987665553310       011  


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .+++||+.|++|.+++.... .++..++..++.|++.+|.|||++|++|+||+|+||+++.++.++++|||.+..
T Consensus        77 -----~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~  150 (260)
T cd06606          77 -----NIFLEYVSGGSLSSLLKKFG-KLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKR  150 (260)
T ss_pred             -----EEEEEecCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEe
Confidence                 13799999999999997765 678889999999999999999999999999999999999999999999998876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .......                                                                         
T Consensus       151 ~~~~~~~-------------------------------------------------------------------------  157 (260)
T cd06606         151 LGDIETG-------------------------------------------------------------------------  157 (260)
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            4411000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                  .......++..|+|||.+.+..++.++|||||||++|+|+++   |......
T Consensus       158 ----------------------------~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~  209 (260)
T cd06606         158 ----------------------------EGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNP  209 (260)
T ss_pred             ----------------------------ccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch
Confidence                                        000133567789999999888899999999999999999985   3333322


Q ss_pred             HHHHHhccc-cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          536 AAAMSDLRD-RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       536 ~~~~~~~~~-~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ...+..+.. ...+......++.+.+|+.+||.++|.+||++.+++.||||
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~~~~  260 (260)
T cd06606         210 MAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQHPFL  260 (260)
T ss_pred             HHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhhCCCC
Confidence            233333332 23333333447889999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.93  E-value=6.2e-26  Score=261.56  Aligned_cols=257  Identities=19%  Similarity=0.154  Sum_probs=169.9

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC---CccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL---GARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  296 (1092)
                      .+|.|+||+|...    .++..++.|....... .......++...+...+|||++.+++....+.....   .......
T Consensus        15 ~g~~g~vy~~~~~----~~~~~v~iK~i~~~~~-~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~   89 (342)
T cd07854          15 CGSNGLVFSAVDS----DCDKRVAVKKIVLTDP-QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELN   89 (342)
T ss_pred             CCCCEEEEEEEEC----CCCcEEEEEEEecCCC-chHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccc
Confidence            3578999999763    2344455543322211 222334455667788899999976655332221110   0000111


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc-CCcEEEecccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ-SNQVKYIGPII  375 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~-~~~vkl~Dfg~  375 (1092)
                      .     ...+|||+. ++|.+++...  .++...++.++.||+.||+|||++||+||||||+||+++. ++.+|++|||+
T Consensus        90 ~-----~~lv~e~~~-~~L~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~  161 (342)
T cd07854          90 S-----VYIVQEYME-TDLANVLEQG--PLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGL  161 (342)
T ss_pred             e-----EEEEeeccc-ccHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCccc
Confidence            1     124788887 5999988643  4677799999999999999999999999999999999974 45789999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++.+......                                                                      
T Consensus       162 ~~~~~~~~~~----------------------------------------------------------------------  171 (342)
T cd07854         162 ARIVDPHYSH----------------------------------------------------------------------  171 (342)
T ss_pred             ceecCCcccc----------------------------------------------------------------------
Confidence            8654310000                                                                      


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCc
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                    ....+...|+.+|+|||.+.+ ..++.++|||||||++|||+++   |..
T Consensus       172 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~  221 (342)
T cd07854         172 ------------------------------KGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAG  221 (342)
T ss_pred             ------------------------------ccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                                          000012357888999998765 5678999999999999999985   433


Q ss_pred             HHHHHHHHHhcccc----------------------CCC------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          532 ERALAAAMSDLRDR----------------------ILP------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~----------------------~~p------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      ..........+...                      ..+      ......++++.+|+.+||.+||.+|||+.++|.||
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~  301 (342)
T cd07854         222 AHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMHP  301 (342)
T ss_pred             CCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCCC
Confidence            32222221111100                      000      11234567788999999999999999999999999


Q ss_pred             hhhhhh
Q 001366          584 VTNEFQ  589 (1092)
Q Consensus       584 ~~~~~~  589 (1092)
                      ||....
T Consensus       302 ~~~~~~  307 (342)
T cd07854         302 YMSCYS  307 (342)
T ss_pred             cccccc
Confidence            998643

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.93  E-value=7e-26  Score=259.45  Aligned_cols=256  Identities=17%  Similarity=0.184  Sum_probs=176.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|.||++...+    .+..++.|....... ........++...+...+|||++.+.........           .
T Consensus        10 ~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-----------~   74 (330)
T cd07834          10 SGAYGVVCSAVDKR----TGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSP-----------E   74 (330)
T ss_pred             CCCCeEEEEEEeCC----CCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCc-----------c
Confidence            35789999998633    234444444322211 1222334445566777789999876655332211           0


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                      ++...-++|+|+.+ +|.+++...+ .++...++.++.||+.||+|||++||+||||||+||+++.++.++++|||++..
T Consensus        75 ~~~~~~lv~e~~~~-~l~~~l~~~~-~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~  152 (330)
T cd07834          75 DFNDVYIVTELMET-DLHKVIKSPQ-PLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARG  152 (330)
T ss_pred             cccceEEEecchhh-hHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEe
Confidence            11112247888874 8999997655 678879999999999999999999999999999999999999999999998876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ......                                                                          
T Consensus       153 ~~~~~~--------------------------------------------------------------------------  158 (330)
T cd07834         153 VDPDED--------------------------------------------------------------------------  158 (330)
T ss_pred             eccccc--------------------------------------------------------------------------
Confidence            441000                                                                          


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                .........+|++|+|||.+.+. .++.++|||||||++|+|+++   |.+...
T Consensus       159 --------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~  212 (330)
T cd07834         159 --------------------------EKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDY  212 (330)
T ss_pred             --------------------------ccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCH
Confidence                                      00011245678999999999887 789999999999999999986   333222


Q ss_pred             HHHHHHhcc--ccC---------------------------CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAAMSDLR--DRI---------------------------LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~~~~~~--~~~---------------------------~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .........  ...                           +...+...++.+.+|+.+||+++|.+||++.++++||||
T Consensus       213 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~  292 (330)
T cd07834         213 IDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYL  292 (330)
T ss_pred             HHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccH
Confidence            111110000  000                           000123356778999999999999999999999999999


Q ss_pred             hhhhccc
Q 001366          586 NEFQEVC  592 (1092)
Q Consensus       586 ~~~~~~~  592 (1092)
                      .......
T Consensus       293 ~~~~~~~  299 (330)
T cd07834         293 AQLHDPE  299 (330)
T ss_pred             Hhhcccc
Confidence            8876543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.93  E-value=6.5e-26  Score=260.42  Aligned_cols=261  Identities=15%  Similarity=0.143  Sum_probs=175.5

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchh-------------hHhhhhhhhhhccCCCCCCCccccceecCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-------------AALKAAGAMMVASNASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (1092)
                      ..+|.|+||++....    .+..++.|+.........             .....++..++...+|||++.+.+....+.
T Consensus        18 g~G~~g~vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         18 GEGTYGKVEKAYDTL----TGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             cCCCceeEEEEEECC----CCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            345789999997532    244555554422211110             012345566788889999998766544332


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                      ..+                .+|||+. ++|.+++.... .++...+..++.||+.||.|||++||+|+||||+||+++..
T Consensus        94 ~~~----------------lv~e~~~-~~l~~~l~~~~-~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~  155 (335)
T PTZ00024         94 FIN----------------LVMDIMA-SDLKKVVDRKI-RLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSK  155 (335)
T ss_pred             cEE----------------EEEeccc-cCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCC
Confidence            222                3788887 59999997654 46777999999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+|++|||+++....+.........                                                      
T Consensus       156 ~~~kl~dfg~~~~~~~~~~~~~~~~~------------------------------------------------------  181 (335)
T PTZ00024        156 GICKIADFGLARRYGYPPYSDTLSKD------------------------------------------------------  181 (335)
T ss_pred             CCEEECCccceeeccccccccccccc------------------------------------------------------
Confidence            99999999998765421110000000                                                      


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~e  524 (1092)
                               .                          ............++.+|+|||.+.+. .++.++|||||||++||
T Consensus       182 ---------~--------------------------~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~e  226 (335)
T PTZ00024        182 ---------E--------------------------TMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAE  226 (335)
T ss_pred             ---------c--------------------------cccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHH
Confidence                     0                          00000111234578899999999874 46999999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhc--cccCC--------------------CC----CCCCCChhHHHHHHhccccCCCCCCC
Q 001366          525 LFGR---FDSERALAAAMSDL--RDRIL--------------------PP----SFLSENPKEAGFCLWQLHPEPLSRPT  575 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~--~~~~~--------------------p~----~~~~~~~~~~~li~~lL~~dP~~Rps  575 (1092)
                      |+++   |.............  .....                    |+    .+...+.++.+|+.+||.++|++||+
T Consensus       227 l~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s  306 (335)
T PTZ00024        227 LLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERIS  306 (335)
T ss_pred             HHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccC
Confidence            9986   33333222211111  00000                    00    12234677889999999999999999


Q ss_pred             HHHHhhhhhhhhhhc
Q 001366          576 TREILQSEVTNEFQE  590 (1092)
Q Consensus       576 a~eiL~~~~~~~~~~  590 (1092)
                      +.|+|.||||.....
T Consensus       307 ~~~~l~~~~~~~~~~  321 (335)
T PTZ00024        307 AKEALKHEYFKSDPL  321 (335)
T ss_pred             HHHHhcCcccCCCCC
Confidence            999999999987543

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.93  E-value=9e-26  Score=246.22  Aligned_cols=239  Identities=15%  Similarity=0.188  Sum_probs=172.1

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .++.|.||++....    .+..++.|+...... .......++..++...+||+++.+......+..             
T Consensus        10 ~g~~~~v~~~~~~~----~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~-------------   71 (253)
T cd05122          10 KGGFGEVYKARHKR----TGKEVAIKVIKLESK-EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDE-------------   71 (253)
T ss_pred             cCCceEEEEEEECC----CCcEEEEEEecccch-hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCe-------------
Confidence            34679999998742    133444444422222 233344455566777789998876554333221             


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                         ..++++|+.|++|.+++......++...+..++.|++.+|.|||.+|++|+||+|+||+++.++.++|+|||.+...
T Consensus        72 ---~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~  148 (253)
T cd05122          72 ---LWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQL  148 (253)
T ss_pred             ---EEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeeccccccc
Confidence               12479999999999999776556888899999999999999999999999999999999999999999999987654


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       149 ~~~~----------------------------------------------------------------------------  152 (253)
T cd05122         149 SDTK----------------------------------------------------------------------------  152 (253)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALA  536 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~  536 (1092)
                                               .   .....|+..|+|||.+.+..++.++|+|||||++|+|+++   |.......
T Consensus       153 -------------------------~---~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~  204 (253)
T cd05122         153 -------------------------A---RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMK  204 (253)
T ss_pred             -------------------------c---ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHH
Confidence                                     0   0134567789999999988899999999999999999986   33321222


Q ss_pred             HHHHhccccCCCCCCCC--CChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          537 AAMSDLRDRILPPSFLS--ENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       537 ~~~~~~~~~~~p~~~~~--~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      ....... ...+.....  .+..+.+|+.+||..+|++|||+.++|+|||
T Consensus       205 ~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~~~~  253 (253)
T cd05122         205 ALFKIAT-NGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKHPF  253 (253)
T ss_pred             HHHHHHh-cCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHHhcCCC
Confidence            2211111 222211111  2677899999999999999999999999998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.93  E-value=8e-26  Score=260.98  Aligned_cols=251  Identities=17%  Similarity=0.221  Sum_probs=171.7

Q ss_pred             ccccceeeeCCCCCcccccccccccccccc-ccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVT-TTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||++....    .+..++.|.... ...........++...+...+|||++.+.+.........     .....
T Consensus        27 ~G~~g~v~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~-----~~~~~   97 (345)
T cd07877          27 SGAYGSVCAAFDTK----TGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE-----EFNDV   97 (345)
T ss_pred             ecCCeEEEEEEEcC----CCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeeccccc-----ccccE
Confidence            45789999997522    244555544322 111222233445667788889999997655432111100     00011


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                      |      +.+++.|++|.++++..  .++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        98 ~------lv~~~~~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~  169 (345)
T cd07877          98 Y------LVTHLMGADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARH  169 (345)
T ss_pred             E------EEehhcccCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEeccccccc
Confidence            1      34445689999988654  477888999999999999999999999999999999999999999999998765


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ...                                                                             
T Consensus       170 ~~~-----------------------------------------------------------------------------  172 (345)
T cd07877         170 TDD-----------------------------------------------------------------------------  172 (345)
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            320                                                                             


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                   ......++++|+|||.+.+ ..++.++|||||||++|||+++   |.....
T Consensus       173 -----------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~  223 (345)
T cd07877         173 -----------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH  223 (345)
T ss_pred             -----------------------------cccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence                                         0013457889999999877 5688999999999999999986   432211


Q ss_pred             HHHHHHhcc--c----------------------cCCC-----CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAAMSDLR--D----------------------RILP-----PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~~~~~~--~----------------------~~~p-----~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .......++  .                      ...|     ..+...++.+.+|+.+||+++|.+||++.++|.||||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f  303 (345)
T cd07877         224 IDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYF  303 (345)
T ss_pred             HHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcChhh
Confidence            111100000  0                      0001     1122457788999999999999999999999999999


Q ss_pred             hhhhccch
Q 001366          586 NEFQEVCA  593 (1092)
Q Consensus       586 ~~~~~~~~  593 (1092)
                      .....+..
T Consensus       304 ~~~~~~~~  311 (345)
T cd07877         304 AQYHDPDD  311 (345)
T ss_pred             hhcCCCCc
Confidence            87655444

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.93  E-value=3.2e-26  Score=260.03  Aligned_cols=249  Identities=17%  Similarity=0.169  Sum_probs=169.5

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||+|.....  ..+..++.|++....  .........++..++...+|||++.+.........       ... 
T Consensus        10 ~g~~g~v~~~~~~~~--~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~-------~~~-   79 (316)
T cd07842          10 RGTYGRVYKAKRKNG--KDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHAD-------KSV-   79 (316)
T ss_pred             cCCcEEEEEEEecCC--CCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCC-------ceE-
Confidence            457899999998431  124566666554321  11112334455667888899999987665443210       011 


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhc----CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc----CCcEE
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNAR----GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ----SNQVK  369 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~----~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~----~~~vk  369 (1092)
                            ..+|||+++ +|.+++...    ...++...++.++.||+.||+|||++||+||||||+||+++.    ++.+|
T Consensus        80 ------~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~k  152 (316)
T cd07842          80 ------YLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVK  152 (316)
T ss_pred             ------EEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEE
Confidence                  137888875 777777432    225677789999999999999999999999999999999999    89999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++.......                                                                 
T Consensus       153 l~Dfg~~~~~~~~~~-----------------------------------------------------------------  167 (316)
T cd07842         153 IGDLGLARLFNAPLK-----------------------------------------------------------------  167 (316)
T ss_pred             ECCCccccccCCCcc-----------------------------------------------------------------
Confidence            999998876431100                                                                 


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                         .........+|.+|+|||.+.+ ..++.++|||||||+||||+++
T Consensus       168 -----------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~  212 (316)
T cd07842         168 -----------------------------------PLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTL  212 (316)
T ss_pred             -----------------------------------cccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhc
Confidence                                               0000113467899999998877 4579999999999999999985


Q ss_pred             ---CCcHHH------------HHHHHHhc------------------------cccCCCC--------CCCCCChhHHHH
Q 001366          529 ---FDSERA------------LAAAMSDL------------------------RDRILPP--------SFLSENPKEAGF  561 (1092)
Q Consensus       529 ---f~~~~~------------~~~~~~~~------------------------~~~~~p~--------~~~~~~~~~~~l  561 (1092)
                         |.....            .......+                        .....+.        .....++++.++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (316)
T cd07842         213 EPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDL  292 (316)
T ss_pred             CCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHH
Confidence               321111            00000000                        0000010        001456778899


Q ss_pred             HHhccccCCCCCCCHHHHhhhhhh
Q 001366          562 CLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       562 i~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      +.+||++||++|||+.|+++||||
T Consensus       293 i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         293 LRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             HHHHhcCCcccCcCHHHHhcCCCC
Confidence            999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.3e-25  Score=250.74  Aligned_cols=244  Identities=16%  Similarity=0.056  Sum_probs=169.6

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|+||+|...+.-......++.|+..............++...+....|||++.++..... ...           
T Consensus        16 g~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~-----------   83 (279)
T cd05057          16 GSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQV-----------   83 (279)
T ss_pred             cCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-Cce-----------
Confidence            34578999998753211111112333333222222233344556667788899999986655432 111           


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           ..+|||+.|++|.+++......+++..++.++.||+.||+|||++||+||||||+||+++..+.+|++|||+++.
T Consensus        84 -----~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~  158 (279)
T cd05057          84 -----QLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKL  158 (279)
T ss_pred             -----EEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCccccc
Confidence                 137999999999999987666688889999999999999999999999999999999999999999999998876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +......                                                                         
T Consensus       159 ~~~~~~~-------------------------------------------------------------------------  165 (279)
T cd05057         159 LDVDEKE-------------------------------------------------------------------------  165 (279)
T ss_pred             ccCcccc-------------------------------------------------------------------------
Confidence            4310000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~  534 (1092)
                                                  .......++..|+|||.+....++.++|||||||++|||++ +   |.....
T Consensus       166 ----------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~  217 (279)
T cd05057         166 ----------------------------YHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPA  217 (279)
T ss_pred             ----------------------------eecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCH
Confidence                                        00001112456999999988889999999999999999997 5   333222


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      .. ....+......+.....+..+.+++..||..+|.+||++.++++
T Consensus       218 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~  263 (279)
T cd05057         218 VE-IPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAESRPTFKELIN  263 (279)
T ss_pred             HH-HHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            21 12222222222333345688899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.93  E-value=4.2e-27  Score=246.06  Aligned_cols=248  Identities=15%  Similarity=0.107  Sum_probs=189.2

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.|...|+  ..|.|||+.-    ++.+..++.|-. .  .+++-..-+++..++...+.|..++.+             
T Consensus        35 FDi~~KLGEGSYGSV~KAIH----~EsG~v~AIK~V-P--V~sDLQEIIKEISIMQQC~S~yVVKYY-------------   94 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIH----RESGHVLAIKKV-P--VDTDLQEIIKEISIMQQCKSKYVVKYY-------------   94 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHH----hccCcEEEEEec-C--ccchHHHHHHHHHHHHHcCCchhhhhh-------------
Confidence            56665555  5799999876    444555555322 2  234445566777778888888766522             


Q ss_pred             cCCCCCcccc--CCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          292 RTGVPASCWI--GGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       292 ~~~~~~~~~~--~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                           ++||.  .-+++||||..|++.|.++.++..+.+.++..|++..|.||+|||...-||||||..||||.-+|..|
T Consensus        95 -----GSYFK~sDLWIVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AK  169 (502)
T KOG0574|consen   95 -----GSYFKHSDLWIVMEYCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAK  169 (502)
T ss_pred             -----hhhccCCceEeehhhcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhh
Confidence                 33442  25669999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||++-.+.+.-            +|                                                    
T Consensus       170 LADFGVAGQLTDTM------------AK----------------------------------------------------  185 (502)
T KOG0574|consen  170 LADFGVAGQLTDTM------------AK----------------------------------------------------  185 (502)
T ss_pred             hhhccccchhhhhH------------Hh----------------------------------------------------
Confidence            99999987755210            00                                                    


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCC
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRF  529 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f  529 (1092)
                                                             -++.+|||+|||||++..-.|+.++||||||++..||..|-
T Consensus       186 ---------------------------------------RNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~  226 (502)
T KOG0574|consen  186 ---------------------------------------RNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGR  226 (502)
T ss_pred             ---------------------------------------hCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCC
Confidence                                                   12678999999999999999999999999999999999874


Q ss_pred             CcHHHHHHHHHhcccc-CCCCCCC---CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          530 DSERALAAAMSDLRDR-ILPPSFL---SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       530 ~~~~~~~~~~~~~~~~-~~p~~~~---~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ++-.+..-......-. ..||.|.   ..+.++.+|++.||.+.|++|.||-++++|+|+...+
T Consensus       227 PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H~FiknA~  290 (502)
T KOG0574|consen  227 PPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEHTFIKNAP  290 (502)
T ss_pred             CCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCCC
Confidence            4433322222222222 2344443   2356688999999999999999999999999997653

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=5.5e-26  Score=261.13  Aligned_cols=249  Identities=23%  Similarity=0.223  Sum_probs=174.9

Q ss_pred             CCchhHHHhhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          209 SGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       209 ~~f~~~~~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .+|++-. +...+|.|.||+|...|+     ..+++|......... ...-..+...+.+.+|||++.++.-......  
T Consensus        75 ~~Fs~~~-~ig~Ggfg~VYkG~l~~~-----~~vAVK~~~~~~~~~-~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~--  145 (361)
T KOG1187|consen   75 NNFSESN-LIGEGGFGTVYKGVLSDG-----TVVAVKRLSSNSGQG-EREFLNEVEILSRLRHPNLVKLLGYCLEGGE--  145 (361)
T ss_pred             hCCchhc-ceecCCCeEEEEEEECCC-----CEEEEEEecCCCCcc-hhHHHHHHHHHhcCCCcCcccEEEEEecCCc--
Confidence            3555433 345568999999999884     445555333322221 2224556667888899999875433221110  


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHhhhcC---ccccCCCCCCeEEcc
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH-KGKRIECLYIFRQIVALVDYHHTQG---VTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~-~~~~~~~~~i~~qil~~l~~lHs~g---IvHrDLKP~Nill~~  364 (1092)
                                   ...++.||+..|+|.++|..... .+++...+.|+.+++.||+|||...   ||||||||+||||+.
T Consensus       146 -------------~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~  212 (361)
T KOG1187|consen  146 -------------HRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDE  212 (361)
T ss_pred             -------------eEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECC
Confidence                         02458999999999999976554 7899999999999999999999854   999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      +.+.|++|||+++.....                                                              
T Consensus       213 ~~~aKlsDFGLa~~~~~~--------------------------------------------------------------  230 (361)
T KOG1187|consen  213 DFNAKLSDFGLAKLGPEG--------------------------------------------------------------  230 (361)
T ss_pred             CCCEEccCccCcccCCcc--------------------------------------------------------------
Confidence            999999999999654310                                                              


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccc-cccccccCcccccCCCCCccccchhhhHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQ-LEEKWYASPEELSGGVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~  523 (1092)
                                                               ....... .||.+|++||.+..+..|.++||||+||+|.
T Consensus       231 -----------------------------------------~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvll  269 (361)
T KOG1187|consen  231 -----------------------------------------DTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLL  269 (361)
T ss_pred             -----------------------------------------ccceeeecCCCCccCChhhhccCCcCcccccccchHHHH
Confidence                                                     0000122 7899999999999899999999999999999


Q ss_pred             HHcCCC---Cc-----HHHHHHH-HHhcc----ccCCCCCCC-CCC------hhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          524 ELFGRF---DS-----ERALAAA-MSDLR----DRILPPSFL-SEN------PKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       524 ell~~f---~~-----~~~~~~~-~~~~~----~~~~p~~~~-~~~------~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||+++-   +.     ......+ ...+.    ..++.|... ...      .++..+..+|++++|..||++.++++.
T Consensus       270 Elitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~  348 (361)
T KOG1187|consen  270 ELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKE  348 (361)
T ss_pred             HHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHH
Confidence            999962   11     1112222 11111    123334432 222      235688999999999999999997553

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.93  E-value=1.5e-25  Score=254.47  Aligned_cols=248  Identities=13%  Similarity=0.069  Sum_probs=174.8

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+...+  ++.|.||+|....    .+..++.+........  .......++..+++...|+|++.+..........+
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   91 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVR----NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAW   91 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcC----CCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeE
Confidence            34443333  3679999998632    2344444443221111  11222335566788889999988666544332222


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+|+|+. ++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+
T Consensus        92 ----------------lv~e~~~-~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~  154 (308)
T cd06634          92 ----------------LVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLV  154 (308)
T ss_pred             ----------------EEEEccC-CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcE
Confidence                            3799997 58888886665667888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||++.....                                                                   
T Consensus       155 kl~dfg~~~~~~~-------------------------------------------------------------------  167 (308)
T cd06634         155 KLGDFGSASIMAP-------------------------------------------------------------------  167 (308)
T ss_pred             EECCcccceeecC-------------------------------------------------------------------
Confidence            9999998754320                                                                   


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC---CCCCccccchhhhHHHHHH
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG---GVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~---~~~t~~sDIwSLGvll~el  525 (1092)
                                                              .....|+..|+|||.+.+   ..++.++|||||||++|||
T Consensus       168 ----------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el  207 (308)
T cd06634         168 ----------------------------------------ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL  207 (308)
T ss_pred             ----------------------------------------cccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHH
Confidence                                                    002346778999999853   5678999999999999999


Q ss_pred             cCCCCc---HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          526 FGRFDS---ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       526 l~~f~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +++..+   .......................+..+.+|+.+||.++|.+||++.+++.|||+...
T Consensus       208 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~~  273 (308)
T cd06634         208 AERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRE  273 (308)
T ss_pred             HcCCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHhhCcccccc
Confidence            986322   222222222222222222233456778999999999999999999999999999774

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.93  E-value=8.7e-26  Score=255.74  Aligned_cols=261  Identities=15%  Similarity=0.164  Sum_probs=171.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|+||++....    .+..++.|+...... ........++..++...+|||++.+.+......... .......  
T Consensus        18 ~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-~~~~~~~--   90 (311)
T cd07866          18 EGTFGEVYKARQIK----TGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKS-KRKRGSV--   90 (311)
T ss_pred             cCCCEEEEEEEECC----CCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccc-cccCceE--
Confidence            34789999998632    234445544322211 111123345666788889999998765433211110 0000111  


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           ..+|+|+.+ +|.+++...+..++..+++.++.||++||+|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        91 -----~lv~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  164 (311)
T cd07866          91 -----YMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARP  164 (311)
T ss_pred             -----EEEEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchh
Confidence                 136777765 78888766666788889999999999999999999999999999999999999999999999876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ........                                                               .     .  
T Consensus       165 ~~~~~~~~---------------------------------------------------------------~-----~--  174 (311)
T cd07866         165 YDGPPPNP---------------------------------------------------------------K-----G--  174 (311)
T ss_pred             ccCCCccc---------------------------------------------------------------c-----c--
Confidence            44111000                                                               0     0  


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCCCCc---HHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGRFDS---ERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~f~~---~~~  534 (1092)
                                            .........+...|+++|+|||.+.+ ..++.++|||||||++|||+++.+.   ...
T Consensus       175 ----------------------~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~  232 (311)
T cd07866         175 ----------------------GGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSD  232 (311)
T ss_pred             ----------------------CCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCH
Confidence                                  00000112235678999999998876 4579999999999999999997332   222


Q ss_pred             HHHH--HHhccccC----------------------CC----CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAA--MSDLRDRI----------------------LP----PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~--~~~~~~~~----------------------~p----~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ....  +.......                      .+    ..+....+.+.+|+.+||..+|.+|||+.|++.||||
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         233 IDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             HHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcCCCC
Confidence            1111  11100000                      01    1123345678899999999999999999999999997

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.93  E-value=9.9e-26  Score=258.70  Aligned_cols=256  Identities=16%  Similarity=0.196  Sum_probs=169.3

Q ss_pred             cccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ++.|+||++...+.. . +..++.|..... ..........++..++... .|||++..+.........           
T Consensus        11 G~~g~vy~~~~~~~~-~-~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~-----------   77 (332)
T cd07857          11 GAYGIVCSARNAETS-E-EETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGN-----------   77 (332)
T ss_pred             cCCeEEEEEEeCCCC-c-CceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeecccc-----------
Confidence            478999999974310 0 334455443211 1111122233444455555 699999865543211000           


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                       +.....+|+++. ++|.+++.... .++..+++.++.||+.||+|||++||+||||||+||+++.++.+||+|||+++.
T Consensus        78 -~~~~~~~~e~~~-~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~  154 (332)
T cd07857          78 -FNELYLYEELME-ADLHQIIRSGQ-PLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARG  154 (332)
T ss_pred             -CCcEEEEEeccc-CCHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCcee
Confidence             011112466664 69999996543 577889999999999999999999999999999999999999999999999876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +......                                                                         
T Consensus       155 ~~~~~~~-------------------------------------------------------------------------  161 (332)
T cd07857         155 FSENPGE-------------------------------------------------------------------------  161 (332)
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            4410000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                ........+||..|+|||.+.+ ..++.++|||||||++|+|+++   |.....
T Consensus       162 --------------------------~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~  215 (332)
T cd07857         162 --------------------------NAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDY  215 (332)
T ss_pred             --------------------------ccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCH
Confidence                                      0001124578999999998766 5689999999999999999986   332211


Q ss_pred             HHHH---HH-----------------------hccc---cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAA---MS-----------------------DLRD---RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~---~~-----------------------~~~~---~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ....   +.                       ....   ..++......++.+.+|+.+||+++|.+|||+.+++.|||+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~  295 (332)
T cd07857         216 VDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYL  295 (332)
T ss_pred             HHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhh
Confidence            1110   00                       0000   01111223346788999999999999999999999999999


Q ss_pred             hhhhcc
Q 001366          586 NEFQEV  591 (1092)
Q Consensus       586 ~~~~~~  591 (1092)
                      .+..++
T Consensus       296 ~~~~~~  301 (332)
T cd07857         296 AIWHDP  301 (332)
T ss_pred             hhhcCc
Confidence            876543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=1.3e-25  Score=248.79  Aligned_cols=246  Identities=15%  Similarity=0.071  Sum_probs=172.7

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc----CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT----MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      .+|.|.||+|...    ..+..++.|+.....    .........++...+...+|||++.+.........       ..
T Consensus        12 ~g~~g~v~~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~-------~~   80 (264)
T cd06653          12 RGAFGEVYLCYDA----DTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEE-------KK   80 (264)
T ss_pred             cCCCeEEEEEEEc----CCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCC-------CE
Confidence            3578999999763    234555555432111    11112233345567788899999876554221100       00


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                             ...+|||+.|++|.+++...+. ++...++.++.||+.||.|||++||+|+||||+||+++.++.++++|||+
T Consensus        81 -------~~~v~e~~~~~~L~~~~~~~~~-l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~  152 (264)
T cd06653          81 -------LSIFVEYMPGGSIKDQLKAYGA-LTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGA  152 (264)
T ss_pred             -------EEEEEEeCCCCcHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcccc
Confidence                   1137899999999999976654 66778999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++.......                                                                       
T Consensus       153 ~~~~~~~~~-----------------------------------------------------------------------  161 (264)
T cd06653         153 SKRIQTICM-----------------------------------------------------------------------  161 (264)
T ss_pred             ccccccccc-----------------------------------------------------------------------
Confidence            876431000                                                                       


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                   .....+...|+..|+|||.+.+..++.++|+|||||++|||+++   |...
T Consensus       162 -----------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  212 (264)
T cd06653         162 -----------------------------SGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEY  212 (264)
T ss_pred             -----------------------------cCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc
Confidence                                         00001134578889999999988889999999999999999986   3333


Q ss_pred             HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          533 RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ...............+......++.+.+|+..||. +|..||++.+++.|||.
T Consensus       213 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~~~~~  264 (264)
T cd06653         213 EAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLRHPFV  264 (264)
T ss_pred             CHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhcCCCC
Confidence            33333333333222222233456889999999998 57999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.3e-25  Score=247.26  Aligned_cols=231  Identities=16%  Similarity=0.149  Sum_probs=168.0

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      ++.|+||++...+      ..++.|.......  ......++..+++..+|+|++..+.........             
T Consensus        17 g~~g~v~~~~~~~------~~v~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~-------------   75 (256)
T cd05039          17 GEFGDVMLGDYRG------QKVAVKCLKDDST--AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPL-------------   75 (256)
T ss_pred             CCCceEEEEEecC------cEEEEEEeccchh--HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCe-------------
Confidence            4679999998743      3445544433222  334455666778888999998765554322222             


Q ss_pred             cCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                         ..+|||+.+++|.++++... ..++...++.++.|++.||.|||++||+||||||+||+++.++.+|++|||.++..
T Consensus        76 ---~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~  152 (256)
T cd05039          76 ---YIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEA  152 (256)
T ss_pred             ---EEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEccccccccc
Confidence               23899999999999997654 25788899999999999999999999999999999999999999999999988664


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       153 ~~~~----------------------------------------------------------------------------  156 (256)
T cd05039         153 SQGQ----------------------------------------------------------------------------  156 (256)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            2100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                    ....++..|+|||.+.+..++.++|||||||++|||++ +   |.... .
T Consensus       157 ------------------------------~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~-~  205 (256)
T cd05039         157 ------------------------------DSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP-L  205 (256)
T ss_pred             ------------------------------ccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCC-H
Confidence                                          01112345999999988889999999999999999986 4   32221 1


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ......+.....+......++.+.+|+.+||.++|++||++.+++..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  252 (256)
T cd05039         206 KDVVPHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQ  252 (256)
T ss_pred             HHHHHHHhcCCCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHHH
Confidence            22222222222222233456888999999999999999999999863

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.93  E-value=9.7e-26  Score=259.95  Aligned_cols=248  Identities=17%  Similarity=0.213  Sum_probs=170.7

Q ss_pred             cccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||+|...    ..+..++.|..... ..........++..+++..+|||++.+...........          .
T Consensus        26 g~~g~v~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~----------~   91 (342)
T cd07879          26 GAYGSVCSAIDK----RTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGD----------E   91 (342)
T ss_pred             cCCeEEEEEEeC----CCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCC----------C
Confidence            578999999752    22445555443221 11111223345667788889999997665533222111          0


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                      +.....+|+|+. .+|.+++.   ..++..++..++.||+.||+|||++||+||||||+||+++.++.+|++|||+++..
T Consensus        92 ~~~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~  167 (342)
T cd07879          92 FQDFYLVMPYMQ-TDLQKIMG---HPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHA  167 (342)
T ss_pred             CceEEEEecccc-cCHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCC
Confidence            011124677775 47877653   34777789999999999999999999999999999999999999999999987642


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ..                                                                              
T Consensus       168 ~~------------------------------------------------------------------------------  169 (342)
T cd07879         168 DA------------------------------------------------------------------------------  169 (342)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            20                                                                              


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                  ......+|++|+|||.+.+ ..++.++|||||||+||||++|   |......
T Consensus       170 ----------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~  221 (342)
T cd07879         170 ----------------------------EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL  221 (342)
T ss_pred             ----------------------------CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                        0013456888999999877 5689999999999999999986   4433221


Q ss_pred             HHHHHhccc------------------------cCCC-----CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          536 AAAMSDLRD------------------------RILP-----PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       536 ~~~~~~~~~------------------------~~~p-----~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      ......+..                        ...+     ..++..++++.+|+.+||+.||.+||++.++|.||||.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~  301 (342)
T cd07879         222 DQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFD  301 (342)
T ss_pred             HHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchh
Confidence            111111100                        0001     11234567889999999999999999999999999998


Q ss_pred             hhhccc
Q 001366          587 EFQEVC  592 (1092)
Q Consensus       587 ~~~~~~  592 (1092)
                      ..+...
T Consensus       302 ~~~~~~  307 (342)
T cd07879         302 SFRDAD  307 (342)
T ss_pred             hccccc
Confidence            876543

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.93  E-value=2.1e-25  Score=248.33  Aligned_cols=244  Identities=16%  Similarity=0.085  Sum_probs=168.8

Q ss_pred             ccccceeeeCCCCCccc-cccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFK-ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|.||++....... .....++.|+...............+..++....|||++.++.........+          
T Consensus        15 ~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~----------   84 (275)
T cd05046          15 RGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY----------   84 (275)
T ss_pred             ccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce----------
Confidence            35789999998532110 1122333444422222212233445566788889999988665433222222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC--------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG--------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~--------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                            .+|||++|++|.++|....        ..++...++.++.||+.||.|||++||+||||||+||+++..+.+++
T Consensus        85 ------lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l  158 (275)
T cd05046          85 ------MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKV  158 (275)
T ss_pred             ------EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEE
Confidence                  3899999999999997644        14778899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++......                                                                   
T Consensus       159 ~~~~~~~~~~~~~-------------------------------------------------------------------  171 (275)
T cd05046         159 SLLSLSKDVYNSE-------------------------------------------------------------------  171 (275)
T ss_pred             cccccccccCccc-------------------------------------------------------------------
Confidence            9999876432100                                                                   


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                         ........++..|+|||.+.+..++.++|||||||++|+|++ + 
T Consensus       172 -----------------------------------~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~  216 (275)
T cd05046         172 -----------------------------------YYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGE  216 (275)
T ss_pred             -----------------------------------ccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence                                               000012345667999999988888999999999999999997 3 


Q ss_pred             --CCcHHHHHHHHHhccccCC-CCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 --FDSERALAAAMSDLRDRIL-PPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                        |....... .........+ .+.....++.+.+++.+||..+|.+||++.+++..
T Consensus       217 ~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~  272 (275)
T cd05046         217 LPFYGLSDEE-VLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSA  272 (275)
T ss_pred             CCccccchHH-HHHHHHcCCcCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHH
Confidence              43222222 2222222222 22233456788999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.93  E-value=1.4e-25  Score=250.07  Aligned_cols=243  Identities=16%  Similarity=0.203  Sum_probs=171.5

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..++.|.||+|...+    .++.++.|+...... .........+...+...+|++++.+..........          
T Consensus         8 g~g~~~~vy~~~~~~----~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~----------   73 (282)
T cd07829           8 GEGTYGVVYKARDKK----TGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKL----------   73 (282)
T ss_pred             cccCcceEEEeeecC----CCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCce----------
Confidence            345789999998743    245555555543321 11222333455566777899988755543322111          


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                            ..+++|+.+ +|.++|......++...++.++.||+.||.|||++||+||||+|+||+++.++.+|++|||+++
T Consensus        74 ------~~v~e~~~~-~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~  146 (282)
T cd07829          74 ------YLVFEYCDM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLAR  146 (282)
T ss_pred             ------EEEecCcCc-CHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCccc
Confidence                  137888885 9999998765568888999999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       147 ~~~~~~--------------------------------------------------------------------------  152 (282)
T cd07829         147 AFGIPL--------------------------------------------------------------------------  152 (282)
T ss_pred             ccCCCc--------------------------------------------------------------------------
Confidence            543100                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                   .......++.+|+|||.+.+. .++.++|||||||++|||+++   |....
T Consensus       153 -----------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~  203 (282)
T cd07829         153 -----------------------------RTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDS  203 (282)
T ss_pred             -----------------------------cccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCcc
Confidence                                         001123456789999998876 789999999999999999986   33322


Q ss_pred             HHHHHHHhcc-------------------ccCCC--------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          534 ALAAAMSDLR-------------------DRILP--------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       534 ~~~~~~~~~~-------------------~~~~p--------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ..........                   ....+        ..++..++.+.+|+..||..+|++||++.+++.||||
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         204 EIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKHPYF  282 (282)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhhCcCC
Confidence            2211111000                   00111        1123346778999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=1.4e-25  Score=245.68  Aligned_cols=241  Identities=17%  Similarity=0.192  Sum_probs=175.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||++...+    .+..++.|.+...... .....-.++..++...+||+++.+..........+          
T Consensus        10 ~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~----------   75 (254)
T cd06627          10 RGAFGVVYKGLNLE----TGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLY----------   75 (254)
T ss_pred             ccCCeEEEEEEEcC----CCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEE----------
Confidence            34679999986532    1344555544333221 22233445556677778999887665544322222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            ++|+|++|++|.+++... ..+++..+..++.|++.+|.|||++||+||||||+||+++.++.++++|||++..
T Consensus        76 ------~v~e~~~~~~L~~~~~~~-~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~  148 (254)
T cd06627          76 ------IILEYAENGSLRQIIKKF-GPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATK  148 (254)
T ss_pred             ------EEEecCCCCcHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEecccccee
Confidence                  379999999999999776 3578889999999999999999999999999999999999999999999998876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ......                                                                          
T Consensus       149 ~~~~~~--------------------------------------------------------------------------  154 (254)
T cd06627         149 LNDVSK--------------------------------------------------------------------------  154 (254)
T ss_pred             cCCCcc--------------------------------------------------------------------------
Confidence            441000                                                                          


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                   ......++..|+|||.+.+..++.++||||||+++|+|+++   |......
T Consensus       155 -----------------------------~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~  205 (254)
T cd06627         155 -----------------------------DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPM  205 (254)
T ss_pred             -----------------------------cccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHH
Confidence                                         00133567789999999888889999999999999999986   3332322


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ....... ....++.....++.+.+|+.+||.++|++||++.+++.||||
T Consensus       206 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~~  254 (254)
T cd06627         206 AALFRIV-QDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLKHPWI  254 (254)
T ss_pred             HHHHHHh-ccCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhcCCCC
Confidence            2222222 223333334457889999999999999999999999999997

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.3e-24  Score=237.81  Aligned_cols=274  Identities=24%  Similarity=0.362  Sum_probs=214.7

Q ss_pred             EEEEEcccceEEeeEEeeeecCCCCCEEEEEEcC-------CCCEEEEEeCCCcEEEEEcCCCCCCCcccccce------
Q 001366          756 CKYARYSKFEVQGMLRTGEFNNSANVICSISFDR-------DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPA------  822 (1092)
Q Consensus       756 ~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fsp-------dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~------  822 (1092)
                      +-+|-|..- ....+.++++.-..-++| ++|.-       -|+|+|.|..|..|.|||+.-.     +...|.      
T Consensus       152 LEvYVyn~~-e~nlYvHHD~ilpafPLC-~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~-----d~v~P~~~LGs~  224 (463)
T KOG0270|consen  152 LEVYVYNEE-EENLYVHHDFILPAFPLC-IEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIV-----DAVLPCVTLGSK  224 (463)
T ss_pred             EEEEEEcCC-CcceeEecceeccCcchh-hhhhhcCCCCCCCcceEEEeccCceeEEeccccc-----cccccceeechh
Confidence            445555432 245556666655555554 56642       3789999999999999998631     111121      


Q ss_pred             -------------eeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEE
Q 001366          823 -------------VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLAS  889 (1092)
Q Consensus       823 -------------~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laS  889 (1092)
                                   ...+|+..|..++|+....+.|||||.|.||++||+.+|++..++..|++.|.++.|+|..+..|++
T Consensus       225 ~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLs  304 (463)
T KOG0270|consen  225 ASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLS  304 (463)
T ss_pred             hhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEe
Confidence                         1235888899999999888999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEecCCCc-eeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc--
Q 001366          890 GSDDCSVKLWNINEKN-SLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL--  966 (1092)
Q Consensus       890 gs~Dg~I~iWDl~~~~-~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs--  966 (1092)
                      ||.|++|.+.|+|... .-..++..+.|-.++|+|...+.++++..||+|+-+|+|+...++.++.+|...|++|+++  
T Consensus       305 Gs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~  384 (463)
T KOG0270|consen  305 GSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQ  384 (463)
T ss_pred             ccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCC
Confidence            9999999999999533 3345667788999999999999999999999999999999988999999999999999997  


Q ss_pred             CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC-EEEEEecCCcEEEEeCCCCCcee
Q 001366          967 DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG-YIACGSESNEVYAYHRSLPMPIT 1042 (1092)
Q Consensus       967 ~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~I~Iwd~~~~~~i~ 1042 (1092)
                      ..+.++|++.|+++++|++.......    ...+.+.  -....|.++.|+-. ++|.|+..+.++|||+.+..++.
T Consensus       385 ~p~~l~t~s~d~~Vklw~~~~~~~~~----v~~~~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  385 TPGLLSTASTDKVVKLWKFDVDSPKS----VKEHSFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             CCcceeeccccceEEEEeecCCCCcc----ccccccc--ccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            66789999999999999998533211    0011111  11244556777644 67888888899999988776654

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.93  E-value=9.9e-26  Score=252.36  Aligned_cols=243  Identities=15%  Similarity=0.179  Sum_probs=171.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||++...+    .++.++.|++... ..........++...+....|+|++.+++....+...+          
T Consensus        11 ~g~~~~v~~~~~~~----~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~----------   76 (288)
T cd07833          11 EGAYGVVLKCRNKA----TGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLY----------   76 (288)
T ss_pred             ccCCeeEEEEEeCC----CCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEE----------
Confidence            35779999987633    2344555544221 12222233445566777788999998776655433333          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+|||++++.|..++... ..++..++..++.||+.||.|||++||+||||||+||+++.++.+|++|||++..
T Consensus        77 ------iv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~  149 (288)
T cd07833          77 ------LVFEYVERTLLELLEASP-GGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARA  149 (288)
T ss_pred             ------EEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccc
Confidence                  379999997777666544 3477779999999999999999999999999999999999999999999998866


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ......                                                                          
T Consensus       150 ~~~~~~--------------------------------------------------------------------------  155 (288)
T cd07833         150 LRARPA--------------------------------------------------------------------------  155 (288)
T ss_pred             cCCCcc--------------------------------------------------------------------------
Confidence            441000                                                                          


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                  .......++.+|+|||.+.+. .++.++|||||||+||+|+++   |.....
T Consensus       156 ----------------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~  207 (288)
T cd07833         156 ----------------------------SPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSD  207 (288)
T ss_pred             ----------------------------ccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence                                        001134678899999999887 789999999999999999986   332222


Q ss_pred             HHHHHHhcc--------------------ccCCCC---------CCCC-CChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          535 LAAAMSDLR--------------------DRILPP---------SFLS-ENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       535 ~~~~~~~~~--------------------~~~~p~---------~~~~-~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      .........                    ...+++         .++. .++++.+|+.+||.++|++||+++++++|||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~  287 (288)
T cd07833         208 IDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHPY  287 (288)
T ss_pred             HHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhcCCC
Confidence            111111000                    000010         1112 2677899999999999999999999999999


Q ss_pred             h
Q 001366          585 T  585 (1092)
Q Consensus       585 ~  585 (1092)
                      |
T Consensus       288 f  288 (288)
T cd07833         288 F  288 (288)
T ss_pred             C
Confidence            7

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.93  E-value=6.8e-26  Score=278.40  Aligned_cols=242  Identities=18%  Similarity=0.203  Sum_probs=183.5

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      +-+|+||+|...+.--. ...+++++|...-.-+  ....-.++..++...+||||++++.......+..          
T Consensus       703 G~FG~VY~g~~~~~~~~-~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~----------  771 (1025)
T KOG1095|consen  703 GAFGEVYEGTYSDVPGS-VSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPL----------  771 (1025)
T ss_pred             ccccceEEEEEecCCCC-ccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcE----------
Confidence            35799999998763322 2255666665444422  2333455566677889999998776655444444          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhc------CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEec
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNAR------GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIG  372 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~------~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~D  372 (1092)
                            +++||++||+|..+|+..      ...+...+.+.++.||+.|..||+++++|||||-..|+||+....|||+|
T Consensus       772 ------i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaD  845 (1025)
T KOG1095|consen  772 ------ILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIAD  845 (1025)
T ss_pred             ------EEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcc
Confidence                  489999999999999887      66788889999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||+||++-+...+..                                              .|                 
T Consensus       846 FGlArDiy~~~yyr~----------------------------------------------~~-----------------  862 (1025)
T KOG1095|consen  846 FGLARDIYDKDYYRK----------------------------------------------HG-----------------  862 (1025)
T ss_pred             cchhHhhhhchheec----------------------------------------------cC-----------------
Confidence            999997653221100                                              00                 


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC----C
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG----R  528 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~----~  528 (1092)
                                                            ...---.|||||.+.++.+|.++|||||||+|||+|+    |
T Consensus       863 --------------------------------------~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~P  904 (1025)
T KOG1095|consen  863 --------------------------------------EAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATP  904 (1025)
T ss_pred             --------------------------------------ccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCC
Confidence                                                  0000123899999999999999999999999999997    4


Q ss_pred             CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          529 FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      |+...........++...+++.. -+..++-+++..||+.+|++||+++.|++
T Consensus       905 Y~~~~n~~v~~~~~~ggRL~~P~-~CP~~ly~lM~~CW~~~pe~RP~F~~i~~  956 (1025)
T KOG1095|consen  905 YPSRSNFEVLLDVLEGGRLDPPS-YCPEKLYQLMLQCWKHDPEDRPSFRTIVE  956 (1025)
T ss_pred             CCCcchHHHHHHHHhCCccCCCC-CCChHHHHHHHHHccCChhhCccHHHHHh
Confidence            66665555555456665554332 33566779999999999999999999987

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.93  E-value=1.7e-25  Score=249.86  Aligned_cols=248  Identities=15%  Similarity=0.076  Sum_probs=171.3

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|.||++...+.-...+..++.|+............-..+...+....|||++............       .     
T Consensus        15 g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~-------~-----   82 (284)
T cd05038          15 GHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGR-------S-----   82 (284)
T ss_pred             CCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCC-------c-----
Confidence            5789999998643212224556666553322221233444555677888999998765433221110       0     


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                        ...+|||++|++|.+++......++...++.++.||+.||+|||++||+||||||+||+++.++.++++|||+++...
T Consensus        83 --~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05038          83 --LRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLP  160 (284)
T ss_pred             --eEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccc
Confidence              123799999999999998766568888999999999999999999999999999999999999999999999887644


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      .....                                                                           
T Consensus       161 ~~~~~---------------------------------------------------------------------------  165 (284)
T cd05038         161 EDKDY---------------------------------------------------------------------------  165 (284)
T ss_pred             cCCcc---------------------------------------------------------------------------
Confidence            10000                                                                           


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHHH------
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERA------  534 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~~------  534 (1092)
                                               ........++..|+|||.+.+..++.++|||||||++|||+++..+...      
T Consensus       166 -------------------------~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~  220 (284)
T cd05038         166 -------------------------YYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFL  220 (284)
T ss_pred             -------------------------eeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhc
Confidence                                     0000011234459999999888899999999999999999986322110      


Q ss_pred             -----------HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          535 -----------LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       535 -----------~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                                 .......+......+.....+.++.+|+.+||.++|.+||++.||++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~  279 (284)
T cd05038         221 RMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILI  279 (284)
T ss_pred             cccccccccccHHHHHHHHHcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence                       111111112222222233445788999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.93  E-value=1.1e-25  Score=280.37  Aligned_cols=140  Identities=19%  Similarity=0.151  Sum_probs=104.7

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc-h-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-S-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .++.|.||++....    .+..++.|++...... . ......++..++...+||+|+.++.........+         
T Consensus        14 ~G~fg~Vy~a~~~~----~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~---------   80 (669)
T cd05610          14 RGAFGKVYLGRKKN----NSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVY---------   80 (669)
T ss_pred             cCCCeEEEEEEECC----CCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEE---------
Confidence            34789999998732    2455666655322211 1 1123344555677789999998765443322222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||+.|++|.++|...+ .++...++.|+.||+.||+|||++||+||||||+||||+.++.+||+|||+++
T Consensus        81 -------lVmEy~~g~~L~~li~~~~-~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          81 -------LVMEYLIGGDVKSLLHIYG-YFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             -------EEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence                   3899999999999997654 46777899999999999999999999999999999999999999999999998


Q ss_pred             ccc
Q 001366          378 ETL  380 (1092)
Q Consensus       378 ~~~  380 (1092)
                      ...
T Consensus       153 ~~~  155 (669)
T cd05610         153 VTL  155 (669)
T ss_pred             ccc
Confidence            653

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.6e-24  Score=245.39  Aligned_cols=270  Identities=16%  Similarity=0.246  Sum_probs=222.9

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceE
Q 001366          785 ISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTV  864 (1092)
Q Consensus       785 l~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i  864 (1092)
                      ++|+ ..+.||+|. ...|++|+.....      ......++ ...|+++.|+++ +.+|++|..+|+|.|||+.+.+.+
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s~~------v~~l~~~~-~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~  252 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASSGS------VTELCSFG-EELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKT  252 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCCCc------eEEeEecC-CCceEEEEECCC-CCEEEEeecCCeEEEEehhhcccc
Confidence            6788 455777775 4589999976521      11122222 789999999998 999999999999999999999999


Q ss_pred             EEeec-cCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeee-Ee-cCCceEEEEEccCCCeEEEEEECCCeEEEE
Q 001366          865 SHYIE-HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLAT-IK-NIANVCCVQFSAHSSHLLAFGSADYRTYCY  941 (1092)
Q Consensus       865 ~~l~~-h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~-l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vw  941 (1092)
                      ..+.+ |...|-+++|+   ...+.+|+.|+.|..+|++....... +. |...||.++|++++. ++|+|+.|+.+.||
T Consensus       253 ~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iw  328 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIW  328 (484)
T ss_pred             ccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceEec
Confidence            99998 99999999997   47899999999999999998876655 54 678899999999995 99999999999999


Q ss_pred             EcCCCCcceEEecCCCCCeEEEEEc--CCCEEEEEE--CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecC
Q 001366          942 DLRNARAPWCVLAGHEKAVSYVKFL--DSGTLVTAS--TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTA 1017 (1092)
Q Consensus       942 Dlr~~~~~~~~l~~H~~~V~~v~fs--~~~~L~Sgs--~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd 1017 (1092)
                      |..... +...+..|..+|.+++|+  ..+.||+|+  .|+.|++||+.        .+.++..+. -...|.++.|++.
T Consensus       329 d~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~--------~g~~i~~vd-tgsQVcsL~Wsk~  398 (484)
T KOG0305|consen  329 DGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN--------TGARIDSVD-TGSQVCSLIWSKK  398 (484)
T ss_pred             cCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC--------CCcEecccc-cCCceeeEEEcCC
Confidence            996554 567888999999999998  567888865  79999999998        345555554 3467999999999


Q ss_pred             CCEEEEEe--cCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEcC
Q 001366         1018 DGYIACGS--ESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092 (1092)
Q Consensus      1018 g~~lasgs--~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~lv 1092 (1092)
                      .+-|+++-  .++.|.||...+.+++.              ...+|...|..++|+|||..+++|+.|.++++|+++
T Consensus       399 ~kEi~sthG~s~n~i~lw~~ps~~~~~--------------~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  399 YKELLSTHGYSENQITLWKYPSMKLVA--------------ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             CCEEEEecCCCCCcEEEEeccccceee--------------eecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence            86555543  57889999877644433              346889999999999999999999999999999974

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.93  E-value=1.4e-25  Score=252.91  Aligned_cols=253  Identities=17%  Similarity=0.137  Sum_probs=171.5

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhh-hhhccCCCCCCCccccceecCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGA-MMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      +..|.+.+.++  +.|.||++...+    .+..++.|+..............++. .+.....|||++..++........
T Consensus        14 ~~~~~~~~~lg~g~~~~v~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~   89 (296)
T cd06618          14 LNDLENLGEIGSGTCGQVYKMRFKK----TGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDV   89 (296)
T ss_pred             cchheeeeEeeccCCeEEEEEEECC----CCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeE
Confidence            34455555543  579999998743    23445555543222222222222223 233444689999876654433322


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCC
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~  366 (1092)
                      +                .+|+|+. ++|.+++......++...+..++.||+.||.|||+ +||+||||||+||+++.++
T Consensus        90 ~----------------~v~e~~~-~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~  152 (296)
T cd06618          90 F----------------ICMELMS-TCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASG  152 (296)
T ss_pred             E----------------EEeeccC-cCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCC
Confidence            2                2677764 58888887655578888899999999999999997 6999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||++..+.....                                                              
T Consensus       153 ~~kL~dfg~~~~~~~~~~--------------------------------------------------------------  170 (296)
T cd06618         153 NVKLCDFGISGRLVDSKA--------------------------------------------------------------  170 (296)
T ss_pred             CEEECccccchhccCCCc--------------------------------------------------------------
Confidence            999999998765331000                                                              


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC----CCccccchhhhHHH
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV----CTTSSNIYSLGVLF  522 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~----~t~~sDIwSLGvll  522 (1092)
                                                                .....++..|+|||.+.+..    ++.++|||||||++
T Consensus       171 ------------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il  208 (296)
T cd06618         171 ------------------------------------------KTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISL  208 (296)
T ss_pred             ------------------------------------------ccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHH
Confidence                                                      00223567799999987643    78999999999999


Q ss_pred             HHHcCC---CCcHHHHHHHH-Hhcccc-CCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          523 FELFGR---FDSERALAAAM-SDLRDR-ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       523 ~ell~~---f~~~~~~~~~~-~~~~~~-~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |||+++   |.......... ..+... ...+.....++++.+|+.+||+++|.+||++.++++||||...
T Consensus       209 ~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  279 (296)
T cd06618         209 VELATGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHPFIRRY  279 (296)
T ss_pred             HHHHhCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhcc
Confidence            999986   33322222222 222221 1112222357789999999999999999999999999999753

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=1e-24  Score=241.25  Aligned_cols=298  Identities=15%  Similarity=0.194  Sum_probs=221.8

Q ss_pred             hhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 001366          726 LRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKI  805 (1092)
Q Consensus       726 l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~I  805 (1092)
                      +.++.-++.++..  +.+....+++++|-++++|++......-..-..........|++++|++.|..|++.+....++|
T Consensus       163 l~hgtk~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  163 LKHGTKIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             ccCCceEEEEeee--cCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            4555556666543  23333456889999999999976654321111112245568999999999999999998999999


Q ss_pred             EEcCCCCCC-----CcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc-eEEEee-----ccCccE
Q 001366          806 FEFNALFND-----SVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ-TVSHYI-----EHEKRA  874 (1092)
Q Consensus       806 wd~~~~~~~-----~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~-~i~~l~-----~h~~~V  874 (1092)
                      +|-+.....     ..-........+|...++|.+|+|.+...++||++||++||||+...+ .+..++     +..-++
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~  320 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV  320 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence            997642111     111222345678999999999999999999999999999999998653 222222     233468


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEecCCCce--eeeEe--cC--CceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc
Q 001366          875 WSVDFSQVHPTKLASGSDDCSVKLWNINEKNS--LATIK--NI--ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA  948 (1092)
Q Consensus       875 ~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~--l~~l~--~~--~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~  948 (1092)
                      ++++|++ ++.+||+|+.||+|.+||......  ...++  |.  ..|+||.|+++|+ +|++-+.|+++++||+|+.+.
T Consensus       321 tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  321 TSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             eeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccccc
Confidence            9999999 899999999999999999864432  22222  43  4899999999995 899999999999999999988


Q ss_pred             ceEEecCCC--CCeEEEEEcCC-CEEEEEE------CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC
Q 001366          949 PWCVLAGHE--KAVSYVKFLDS-GTLVTAS------TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG 1019 (1092)
Q Consensus       949 ~~~~l~~H~--~~V~~v~fs~~-~~L~Sgs------~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~ 1019 (1092)
                      ++.+..+-.  .+-+.++|+|. +.|++|+      ..|++.+||..+        ...++.+.-.+..|..+.|+|-=+
T Consensus       399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t--------~d~v~ki~i~~aSvv~~~WhpkLN  470 (641)
T KOG0772|consen  399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT--------LDTVYKIDISTASVVRCLWHPKLN  470 (641)
T ss_pred             chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc--------eeeEEEecCCCceEEEEeecchhh
Confidence            877765532  35577899954 5566765      357899999884        445666666678888999999877


Q ss_pred             EEEEEecCCcEEEEeC
Q 001366         1020 YIACGSESNEVYAYHR 1035 (1092)
Q Consensus      1020 ~lasgs~Dg~I~Iwd~ 1035 (1092)
                      .|..|+.||.++||.-
T Consensus       471 Qi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  471 QIFAGSGDGTAHVYYD  486 (641)
T ss_pred             heeeecCCCceEEEEC
Confidence            8889999999999863

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=2.6e-26  Score=276.13  Aligned_cols=197  Identities=18%  Similarity=0.134  Sum_probs=159.3

Q ss_pred             CCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCc
Q 001366          271 SPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGV  350 (1092)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gI  350 (1092)
                      .+=|+.+.-|..-+.++|+                +|+|+.||+|..+|...+ .+++..++.|...|+.||+-+|+.|+
T Consensus       134 s~Wiv~LhyAFQD~~~LYl----------------VMdY~pGGDlltLlSk~~-~~pE~~ArFY~aEiVlAldslH~mgy  196 (1317)
T KOG0612|consen  134 SEWIVQLHYAFQDERYLYL----------------VMDYMPGGDLLTLLSKFD-RLPEDWARFYTAEIVLALDSLHSMGY  196 (1317)
T ss_pred             cHHHHHHHHHhcCccceEE----------------EEecccCchHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHhccc
Confidence            4445555555555555553                899999999999998887 67787999999999999999999999


Q ss_pred             cccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccc
Q 001366          351 TFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLF  430 (1092)
Q Consensus       351 vHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (1092)
                      |||||||+||||+..|+||++|||.+-.+...++.                                             
T Consensus       197 VHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V---------------------------------------------  231 (1317)
T KOG0612|consen  197 VHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTV---------------------------------------------  231 (1317)
T ss_pred             eeccCCcceeEecccCcEeeccchhHHhcCCCCcE---------------------------------------------
Confidence            99999999999999999999999988665421110                                             


Q ss_pred             cCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC----
Q 001366          431 PSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG----  506 (1092)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~----  506 (1092)
                                                                              . -...+|||-|.|||+|..    
T Consensus       232 --------------------------------------------------------~-s~~aVGTPDYISPEvLqs~~~~  254 (1317)
T KOG0612|consen  232 --------------------------------------------------------R-SSVAVGTPDYISPEVLQSQGDG  254 (1317)
T ss_pred             --------------------------------------------------------E-eccccCCCCccCHHHHHhhcCC
Confidence                                                                    0 115799999999999964    


Q ss_pred             -CCCCccccchhhhHHHHHHcC---CCCcHHHHHHHHHhccc---cCCCCCCCCCChhHHHHHHhccccCCCCCCC---H
Q 001366          507 -GVCTTSSNIYSLGVLFFELFG---RFDSERALAAAMSDLRD---RILPPSFLSENPKEAGFCLWQLHPEPLSRPT---T  576 (1092)
Q Consensus       507 -~~~t~~sDIwSLGvll~ell~---~f~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps---a  576 (1092)
                       +.|+..+|+|||||++||||+   ||..+.-...+-++..+   -.+| .....++...+||..+|+ +|+.|..   +
T Consensus       255 ~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP-~~~~VSeeakdLI~~ll~-~~e~RLgrngi  332 (1317)
T KOG0612|consen  255 KGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFP-DETDVSEEAKDLIEALLC-DREVRLGRNGI  332 (1317)
T ss_pred             ccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCC-cccccCHHHHHHHHHHhc-ChhhhcccccH
Confidence             568999999999999999996   58777665555455444   3455 444589999999999996 6888988   9


Q ss_pred             HHHhhhhhhhhh
Q 001366          577 REILQSEVTNEF  588 (1092)
Q Consensus       577 ~eiL~~~~~~~~  588 (1092)
                      .+|..||||.+.
T Consensus       333 edik~HpFF~g~  344 (1317)
T KOG0612|consen  333 EDIKNHPFFEGI  344 (1317)
T ss_pred             HHHHhCccccCC
Confidence            999999999864

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.93  E-value=2.3e-25  Score=246.03  Aligned_cols=236  Identities=15%  Similarity=0.104  Sum_probs=168.7

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|.||++...+     +..++.|........  ...-.++..++....|||++....... +..         .+ 
T Consensus        15 g~G~~g~v~~~~~~~-----~~~~a~K~~~~~~~~--~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~---------~~-   76 (260)
T cd05067          15 GAGQFGEVWMGYYNG-----HTKVAIKSLKQGSMS--PEAFLAEANLMKQLQHPRLVRLYAVVT-QEP---------IY-   76 (260)
T ss_pred             ccCccceEEeeecCC-----CceEEEEEecCCCCc--HHHHHHHHHHHHhcCCcCeeeEEEEEc-cCC---------cE-
Confidence            345789999998754     344566554332222  122234556778889999987654321 111         11 


Q ss_pred             cccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                            .+|+|+.|++|.+++.. .+..++..+++.++.||+.||+|||+.||+||||||+||+++.++.++++|||+++
T Consensus        77 ------~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  150 (260)
T cd05067          77 ------IITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLAR  150 (260)
T ss_pred             ------EEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCccee
Confidence                  37999999999999965 34467888899999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .......                                                                         
T Consensus       151 ~~~~~~~-------------------------------------------------------------------------  157 (260)
T cd05067         151 LIEDNEY-------------------------------------------------------------------------  157 (260)
T ss_pred             ecCCCCc-------------------------------------------------------------------------
Confidence            5431000                                                                         


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~  533 (1092)
                                                   .......++..|+|||.+.+..++.++|||||||++|||++ +   |....
T Consensus       158 -----------------------------~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  208 (260)
T cd05067         158 -----------------------------TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMT  208 (260)
T ss_pred             -----------------------------ccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCC
Confidence                                         00002234567999999998889999999999999999997 4   43322


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      .. .....+.....++.....+..+.+|+.+||.++|++||++++++.
T Consensus       209 ~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05067         209 NP-EVIQNLERGYRMPRPDNCPEELYELMRLCWKEKPEERPTFEYLRS  255 (260)
T ss_pred             hH-HHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            22 222222222223333445678999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.6e-25  Score=253.77  Aligned_cols=286  Identities=22%  Similarity=0.276  Sum_probs=226.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 001366          781 VICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT  860 (1092)
Q Consensus       781 ~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t  860 (1092)
                      ..+.|+.+++-..++.+|.. .++||.+........-.+.......-...+..|+|+....++||||+..|.|-+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            34556677888889998865 78899876521110000000000111234567889876689999999999999999987


Q ss_pred             ---CceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec-CCceEEEEEccCCCeEEEEEECCC
Q 001366          861 ---GQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN-IANVCCVQFSAHSSHLLAFGSADY  936 (1092)
Q Consensus       861 ---g~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~-~~~V~sl~fsp~~~~~latgs~Dg  936 (1092)
                         .+.+..|..|+..|.+++|++..+.+|+|||.||+||+||++..+...++.. ...|..|+|+|...+.|+++...|
T Consensus       120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG  199 (839)
T KOG0269|consen  120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG  199 (839)
T ss_pred             cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence               4567788999999999999999999999999999999999999998888875 567999999998888999999999


Q ss_pred             eEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEe
Q 001366          937 RTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLS 1015 (1092)
Q Consensus       937 ~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s 1015 (1092)
                      .+++||+|........+.+|.++|.|+.|+ +..+|+||+.|++|+|||+....      ...+.++. ...+|..|.|-
T Consensus       200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~------~~~~~tIn-Tiapv~rVkWR  272 (839)
T KOG0269|consen  200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR------AKPKHTIN-TIAPVGRVKWR  272 (839)
T ss_pred             eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC------ccceeEEe-ecceeeeeeec
Confidence            999999999988888899999999999999 56689999999999999998532      23344443 35689999999


Q ss_pred             cCCC-EEEEEe--cCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC-CCCEEEEEecCCeEE
Q 001366         1016 TADG-YIACGS--ESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR-RSDMVVAANSSGCIK 1087 (1092)
Q Consensus      1016 pdg~-~lasgs--~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp-d~~~Lasgs~DG~V~ 1087 (1092)
                      |... .||+++  .|-.|+|||+..+-.-             ......|...|+.++|.. |...|.+++.||.|.
T Consensus       273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP-------------~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  273 PARSYHLATCSMVVDTSVHVWDVRRPYIP-------------YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             cCccchhhhhhccccceEEEEeecccccc-------------ceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            9866 467666  5788999998765422             234467889999999987 667888999999863

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.93  E-value=1.5e-25  Score=257.76  Aligned_cols=259  Identities=19%  Similarity=0.225  Sum_probs=175.9

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.+  +|.|.||+|....    .+..++.|..... ..........++..++... +|||++.+.+....+...  
T Consensus         9 y~~~~~lg~g~~~~v~~~~~~~----~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~--   82 (337)
T cd07852           9 YEILQKLGKGAYGIVWKAIDRR----TKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDK--   82 (337)
T ss_pred             HHHhHhhcCCCCeeEEEEEEcC----CCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCc--
Confidence            4444444  4789999997632    1334444433211 1122233344566677788 999999876543211100  


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                           .+       ..+|||+.+ +|.+++...  .+++..++.++.||+.||.|||++||+||||||+||+++.++.+|
T Consensus        83 -----~~-------~lv~e~~~~-~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~k  147 (337)
T cd07852          83 -----DI-------YLVFEYMET-DLHAVIRAN--ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVK  147 (337)
T ss_pred             -----eE-------EEEeccccc-CHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEE
Confidence                 01       137899975 999999765  677778899999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++.+......                                                                
T Consensus       148 l~d~g~~~~~~~~~~~----------------------------------------------------------------  163 (337)
T cd07852         148 LADFGLARSLSELEEN----------------------------------------------------------------  163 (337)
T ss_pred             Eeeccchhcccccccc----------------------------------------------------------------
Confidence            9999988764410000                                                                


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                        ..........||.+|+|||.+.+ ..++.++|||||||++|||+++
T Consensus       164 ----------------------------------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg  209 (337)
T cd07852         164 ----------------------------------PENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLG  209 (337)
T ss_pred             ----------------------------------ccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhC
Confidence                                              00011124568999999998866 5578999999999999999986


Q ss_pred             ---CCcHHHHHHHH--------------------------Hhccc---cCCCCCCCCCChhHHHHHHhccccCCCCCCCH
Q 001366          529 ---FDSERALAAAM--------------------------SDLRD---RILPPSFLSENPKEAGFCLWQLHPEPLSRPTT  576 (1092)
Q Consensus       529 ---f~~~~~~~~~~--------------------------~~~~~---~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa  576 (1092)
                         |..........                          .....   ..+...+...++.+.+|+.+||+.+|++|||+
T Consensus       210 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~  289 (337)
T cd07852         210 KPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTA  289 (337)
T ss_pred             CCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCH
Confidence               33221111100                          00000   01111223357788999999999999999999


Q ss_pred             HHHhhhhhhhhhhcc
Q 001366          577 REILQSEVTNEFQEV  591 (1092)
Q Consensus       577 ~eiL~~~~~~~~~~~  591 (1092)
                      .++++|||+......
T Consensus       290 ~~il~~~~~~~~~~~  304 (337)
T cd07852         290 EEALEHPYVAQFHNP  304 (337)
T ss_pred             HHHhhChhhhhhccC
Confidence            999999999876443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.93  E-value=5.5e-26  Score=235.83  Aligned_cols=240  Identities=16%  Similarity=0.142  Sum_probs=168.2

Q ss_pred             cceeeeCCCCCccccccccccccccccccCchhhHhhhhhh-hhhccCCCCCCCccccceecCCCCCCCccCCCCCcccc
Q 001366          223 KGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGA-MMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWI  301 (1092)
Q Consensus       223 ~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (1092)
                      -|+|.+....    -.+..+|+|...-+.......+-.... -++.+...|.|+.-+.-.+.|....             
T Consensus       105 cG~V~k~~~r----s~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~-------------  167 (391)
T KOG0983|consen  105 CGQVWKMRFR----STGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVF-------------  167 (391)
T ss_pred             ccceEEEEEc----ccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHH-------------
Confidence            4777777651    123344444433332222222211111 1233445677776554444443333             


Q ss_pred             CCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          302 GGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       302 ~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          .-+.+.+..+..+|++-...+++..+-++..-++.||.||.. +||+|||+||+|||++..|+||++|||++-.+.
T Consensus       168 ----IcMelMs~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlv  243 (391)
T KOG0983|consen  168 ----ICMELMSTCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLV  243 (391)
T ss_pred             ----HHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceee
Confidence                223344566778887766678887888999999999999985 699999999999999999999999999987655


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ++-                                                                             
T Consensus       244 dSk-----------------------------------------------------------------------------  246 (391)
T KOG0983|consen  244 DSK-----------------------------------------------------------------------------  246 (391)
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            311                                                                             


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC---CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG---GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~---~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                 .-+...|.+.|||||.+.-   ..|+.++|+||||+.|+||.|+   |.+...
T Consensus       247 ---------------------------AhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~t  299 (391)
T KOG0983|consen  247 ---------------------------AHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKT  299 (391)
T ss_pred             ---------------------------ccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCc
Confidence                                       1124568899999999865   4689999999999999999996   555545


Q ss_pred             HHHHHHhccccCCCCCCC---CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          535 LAAAMSDLRDRILPPSFL---SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~---~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      .+..+..+.. ..||.++   ..+|.+.+|+..||.+|+.+||.-.++|+|||+...
T Consensus       300 dFe~ltkvln-~ePP~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h~Fi~~y  355 (391)
T KOG0983|consen  300 DFEVLTKVLN-EEPPLLPGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEHPFIKRY  355 (391)
T ss_pred             cHHHHHHHHh-cCCCCCCcccCcCHHHHHHHHHHhhcCcccCcchHHHhcCcceeec
Confidence            5555555544 2333332   368999999999999999999999999999998653

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.93  E-value=3.2e-26  Score=253.32  Aligned_cols=243  Identities=20%  Similarity=0.206  Sum_probs=168.2

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +..|.||+|.....-...+..++.|+............-.++...+...+|||++.++..........            
T Consensus        10 G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~------------   77 (259)
T PF07714_consen   10 GSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLF------------   77 (259)
T ss_dssp             ESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEE------------
T ss_pred             CCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccc------------
Confidence            45789999887521112234455555533323333445555667777889999998776655222222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                          +++|||.+|+|.++|... ...++..+...|+.||+.||.|||+++|+|+||+|+||+++.++.+||+|||+++..
T Consensus        78 ----lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~  153 (259)
T PF07714_consen   78 ----LVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPI  153 (259)
T ss_dssp             ----EEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEET
T ss_pred             ----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                389999999999999876 567888899999999999999999999999999999999999999999999988764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ......                                                                          
T Consensus       154 ~~~~~~--------------------------------------------------------------------------  159 (259)
T PF07714_consen  154 SEKSKY--------------------------------------------------------------------------  159 (259)
T ss_dssp             TTSSSE--------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            210000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                 .......+...|+|||.+.+..++.++||||||+++|||++ +   |..... 
T Consensus       160 ---------------------------~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~-  211 (259)
T PF07714_consen  160 ---------------------------KNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDN-  211 (259)
T ss_dssp             ---------------------------EESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCH-
T ss_pred             ---------------------------cccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence                                       00002234556999999999889999999999999999998 3   333222 


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ......+.....++.....+..+..++..||+.+|.+||++.+|++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~  257 (259)
T PF07714_consen  212 EEIIEKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQ  257 (259)
T ss_dssp             HHHHHHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH
T ss_pred             ccccccccccccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence            2222233332223334445788999999999999999999999986

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.93  E-value=3.1e-25  Score=245.14  Aligned_cols=235  Identities=15%  Similarity=0.092  Sum_probs=166.7

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||++...+     +..++.|+...  .........++..+++...|+|++.+...... ..         +   
T Consensus        16 ~g~~~~vy~~~~~~-----~~~~~iK~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~---------~---   75 (260)
T cd05073          16 AGQFGEVWMATYNK-----HTKVAVKTMKP--GSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EP---------I---   75 (260)
T ss_pred             CccceEEEEEEecC-----CccEEEEecCC--ChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CC---------e---
Confidence            34678999997543     22334443321  11112233445567888899999976544332 11         1   


Q ss_pred             ccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                          ..+|||+.|++|.+++.. .+...+..+++.++.||+.||.|||+.|++||||||+||+++..+.+|++|||+++.
T Consensus        76 ----~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~  151 (260)
T cd05073          76 ----YIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARV  151 (260)
T ss_pred             ----EEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceee
Confidence                137999999999999965 345577778899999999999999999999999999999999999999999998865


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +.....                                                                          
T Consensus       152 ~~~~~~--------------------------------------------------------------------------  157 (260)
T cd05073         152 IEDNEY--------------------------------------------------------------------------  157 (260)
T ss_pred             ccCCCc--------------------------------------------------------------------------
Confidence            431000                                                                          


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~  534 (1092)
                                                  .......++..|+|||.+....++.++|||||||++|+|++ +   |.....
T Consensus       158 ----------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~  209 (260)
T cd05073         158 ----------------------------TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN  209 (260)
T ss_pred             ----------------------------ccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCH
Confidence                                        00001224456999999998889999999999999999997 4   433222


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      . .....+......+.....+..+.+++.+||+++|.+||++.+++.
T Consensus       210 ~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05073         210 P-EVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQS  255 (260)
T ss_pred             H-HHHHHHhCCCCCCCcccCCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence            2 222233333333344556788999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=2.3e-25  Score=245.88  Aligned_cols=235  Identities=14%  Similarity=0.087  Sum_probs=166.6

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|+||++...+.     ..++.|.......  ....-.++...+...+|||++.+......+...+            
T Consensus        17 g~~~~v~~~~~~~~-----~~~~vK~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~------------   77 (261)
T cd05034          17 GQFGEVWMGTWNGT-----TKVAVKTLKPGTM--SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIY------------   77 (261)
T ss_pred             CcceEEEEEEEcCC-----ceEEEEEecCCcc--CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceE------------
Confidence            57899999876442     2234444432222  1222344556777888999988665533222222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                          .+|+|++|++|.+++... +..++..+++.++.||+.||.|||++||+|+||||+||+++.++.+|++|||+++.+
T Consensus        78 ----~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~  153 (261)
T cd05034          78 ----IVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLI  153 (261)
T ss_pred             ----EEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceec
Confidence                379999999999999664 356788899999999999999999999999999999999999999999999988664


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ......                                                                          
T Consensus       154 ~~~~~~--------------------------------------------------------------------------  159 (261)
T cd05034         154 EDDEYT--------------------------------------------------------------------------  159 (261)
T ss_pred             cchhhh--------------------------------------------------------------------------
Confidence            310000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                  ......++..|+|||.+.+..++.++|||||||++|||++ +   |.+....
T Consensus       160 ----------------------------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~  211 (261)
T cd05034         160 ----------------------------AREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNR  211 (261)
T ss_pred             ----------------------------hhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence                                        0001112456999999998889999999999999999997 4   4333222


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ... ..+.....++.....++.+.+++.+||..+|.+||++.++++
T Consensus       212 ~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  256 (261)
T cd05034         212 EVL-EQVERGYRMPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQS  256 (261)
T ss_pred             HHH-HHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence            222 222222222333344678899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.93  E-value=7.2e-26  Score=239.26  Aligned_cols=267  Identities=13%  Similarity=0.139  Sum_probs=183.5

Q ss_pred             ch-hHHHhhhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCC
Q 001366          211 FS-EFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       211 f~-~~~~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  288 (1092)
                      |. -|.+...+-|.|.-.+-+---.++ .+.+.++||.--.-+.+. .+-++++..+... -|+||+.+++-.-.+...|
T Consensus        75 F~d~YkLt~e~LGeGAyasVqtcv~i~-t~~EYAVKiidKq~gHsR-~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FY  152 (463)
T KOG0607|consen   75 FEDMYKLTSELLGEGAYASVQTCVSIQ-TGKEYAVKIIDKQPGHSR-SRVFREVETFYQCQGHKNILQLIEFFEDDTRFY  152 (463)
T ss_pred             HHHHHHhHHHHhcCccceeeeeeeeec-cchhhhhhhhhcCCchHH-HHHHHHHHHHHHhcCCccHHHHHHHhcccceEE
Confidence            44 345555555665422211100111 245566666533323333 3344554444444 7899998877766555555


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc-
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ-  367 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~-  367 (1092)
                                      ++||-+.||.|...|..+.. +++.++..+.+.|+.||+|||.+||+||||||+|||-...+. 
T Consensus       153 ----------------LVfEKm~GGplLshI~~~~~-F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~v  215 (463)
T KOG0607|consen  153 ----------------LVFEKMRGGPLLSHIQKRKH-FNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKV  215 (463)
T ss_pred             ----------------EEEecccCchHHHHHHHhhh-ccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCc
Confidence                            38999999999999977654 677799999999999999999999999999999999987665 


Q ss_pred             --EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          368 --VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       368 --vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                        |||+||-+...+.                                    ++.+.                        
T Consensus       216 sPvKiCDfDLgSg~k------------------------------------~~~~~------------------------  235 (463)
T KOG0607|consen  216 SPVKICDFDLGSGIK------------------------------------LNNDC------------------------  235 (463)
T ss_pred             Cceeeeccccccccc------------------------------------cCCCC------------------------
Confidence              7999996653322                                    01100                        


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----CCCCccccchhhhH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----GVCTTSSNIYSLGV  520 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----~~~t~~sDIwSLGv  520 (1092)
                                +                          ....+.+.+.+|+..|||||+..-     ..|+.++|.|||||
T Consensus       236 ----------s--------------------------pastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGv  279 (463)
T KOG0607|consen  236 ----------S--------------------------PASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGV  279 (463)
T ss_pred             ----------C--------------------------CCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHH
Confidence                      0                          011334567899999999998643     45899999999999


Q ss_pred             HHHHHcCCCCcH--------------------HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHh
Q 001366          521 LFFELFGRFDSE--------------------RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREIL  580 (1092)
Q Consensus       521 ll~ell~~f~~~--------------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL  580 (1092)
                      |||-||+|++++                    ..++.-++.-........+...+.+..+++..+|..++.+|.+|.+++
T Consensus       280 IlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vl  359 (463)
T KOG0607|consen  280 ILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVL  359 (463)
T ss_pred             HHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhcc
Confidence            999999875443                    222332333333333345666778888999999999999999999999


Q ss_pred             hhhhhhhhhccc
Q 001366          581 QSEVTNEFQEVC  592 (1092)
Q Consensus       581 ~~~~~~~~~~~~  592 (1092)
                      +|||++......
T Consensus       360 nhPw~~~~~~ek  371 (463)
T KOG0607|consen  360 NHPWVQRCAPEK  371 (463)
T ss_pred             CCccccccchhc
Confidence            999998765443

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.93  E-value=1.7e-25  Score=249.98  Aligned_cols=243  Identities=17%  Similarity=0.185  Sum_probs=170.6

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecC--CCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSN--GSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  296 (1092)
                      -+|.|.||+|...+    .+..++.|+..... .........++...+...+|||++.+.+....+  ...+        
T Consensus         9 ~g~~~~vy~~~~~~----~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~--------   76 (287)
T cd07840           9 EGTYGQVYKARNKK----TGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIY--------   76 (287)
T ss_pred             cCCCeEEEEEEECC----CCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEE--------
Confidence            35789999997643    24455555553322 112222334455667777899998876654433  1111        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              .+|+|+.+ +|.+++......++..+++.++.||+.||+|||++|++|+||||+||+++.++.+|++|||++
T Consensus        77 --------lv~e~~~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~  147 (287)
T cd07840          77 --------MVFEYMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLA  147 (287)
T ss_pred             --------EEeccccc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccce
Confidence                    37888875 999999776567888899999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      ........                                                                        
T Consensus       148 ~~~~~~~~------------------------------------------------------------------------  155 (287)
T cd07840         148 RPYTKRNS------------------------------------------------------------------------  155 (287)
T ss_pred             eeccCCCc------------------------------------------------------------------------
Confidence            76431000                                                                        


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                    ...+...++.+|+|||.+.+ ..++.++|||||||++|||+++   |...
T Consensus       156 ------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~  205 (287)
T cd07840         156 ------------------------------ADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGS  205 (287)
T ss_pred             ------------------------------ccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                                          00112356788999998776 4579999999999999999986   3322


Q ss_pred             HHHHHHHHhcc--ccCC--------------------------CCCCCC-CChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          533 RALAAAMSDLR--DRIL--------------------------PPSFLS-ENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       533 ~~~~~~~~~~~--~~~~--------------------------p~~~~~-~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      ...........  ....                          ...+.. .++.+.+++.+||.++|.+||++.++++||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~~  285 (287)
T cd07840         206 TELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQHE  285 (287)
T ss_pred             ChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhhCc
Confidence            21111111000  0000                          001122 267888999999999999999999999999


Q ss_pred             hh
Q 001366          584 VT  585 (1092)
Q Consensus       584 ~~  585 (1092)
                      ||
T Consensus       286 ~~  287 (287)
T cd07840         286 YF  287 (287)
T ss_pred             CC
Confidence            97

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.93  E-value=2.5e-25  Score=248.78  Aligned_cols=245  Identities=18%  Similarity=0.128  Sum_probs=165.4

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhh-H---hhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDA-A---LKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      ++.|.||+|...+    .+..++.|+.......... .   ..+...+.+...+|||++.+...........    ....
T Consensus        10 g~~~~v~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~----~~~~   81 (287)
T cd07838          10 GAYGTVYKARDLN----TGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDR----ELKL   81 (287)
T ss_pred             cCceEEEEEEECC----CCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCC----Ccee
Confidence            4679999999743    2344555444221111111 1   1122222344557999988766544322100    0111


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                      +       .+|+|+.+ +|.+++.... ..++...++.++.||+.||.|||++||+|+||||+||+++.++.+|++|||+
T Consensus        82 ~-------l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~  153 (287)
T cd07838          82 T-------LVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGL  153 (287)
T ss_pred             E-------EEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCc
Confidence            1       36888875 8999997643 3578889999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      +..+....                                                                        
T Consensus       154 ~~~~~~~~------------------------------------------------------------------------  161 (287)
T cd07838         154 ARIYSFEM------------------------------------------------------------------------  161 (287)
T ss_pred             ceeccCCc------------------------------------------------------------------------
Confidence            76643100                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCC---CcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRF---DSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f---~~~  532 (1092)
                                                      ......++..|+|||.+.+..++.++|||||||++|||+++.   ...
T Consensus       162 --------------------------------~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~  209 (287)
T cd07838         162 --------------------------------ALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGT  209 (287)
T ss_pred             --------------------------------ccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCC
Confidence                                            001234678899999999988999999999999999999863   322


Q ss_pred             HHHHHHHHhcccc-----------------CCCC--------CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          533 RALAAAMSDLRDR-----------------ILPP--------SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       533 ~~~~~~~~~~~~~-----------------~~p~--------~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .............                 .++.        .....++.+.+||.+||.+||.+||++.++++||||
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         210 SEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             ChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhcCcCC
Confidence            2211111111100                 0000        011234667899999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.93  E-value=2.2e-25  Score=244.70  Aligned_cols=239  Identities=20%  Similarity=0.186  Sum_probs=173.3

Q ss_pred             cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||++...    ..+..++.|...... ..........+...+...+|||++.+......+...            
T Consensus        11 g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~------------   74 (256)
T cd08530          11 GSYGSVYKVKRL----SDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKL------------   74 (256)
T ss_pred             CCceeEEEEEEC----CCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEE------------
Confidence            467889987642    123344444432222 222223334556677888899999765443322111            


Q ss_pred             ccCCCcccccCCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNAR---GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~---~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                          ..+++|+.|++|.+++...   +..+++..+..++.||+.||.|||++|++|+||+|+||+++.++.+|++|||++
T Consensus        75 ----~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~  150 (256)
T cd08530          75 ----CIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGIS  150 (256)
T ss_pred             ----EEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccch
Confidence                1379999999999999652   345788789999999999999999999999999999999999999999999988


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       151 ~~~~~~--------------------------------------------------------------------------  156 (256)
T cd08530         151 KVLKKN--------------------------------------------------------------------------  156 (256)
T ss_pred             hhhccC--------------------------------------------------------------------------
Confidence            664310                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                     ......++..|+|||.+.+..++.++|+||||+++|||+++   |....
T Consensus       157 -------------------------------~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~  205 (256)
T cd08530         157 -------------------------------MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARS  205 (256)
T ss_pred             -------------------------------CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                                           00023467789999999998899999999999999999986   33322


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .. ...........++.....+..+.+++.+||+++|.+||++.++++||++
T Consensus       206 ~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~p~~  256 (256)
T cd08530         206 MQ-DLRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILASPAV  256 (256)
T ss_pred             HH-HHHHHHhcCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhcCCCC
Confidence            22 1222223334444444567889999999999999999999999999974

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.92  E-value=1.9e-25  Score=248.61  Aligned_cols=260  Identities=14%  Similarity=0.118  Sum_probs=176.4

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCC-CCCCCccccceecCCCCCCCccCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNA-SPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ..+|.|.||++....    .+..++.|++.....  .........+..++.... |||++.++.....+...+       
T Consensus        10 g~g~~~~vy~~~~~~----~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~-------   78 (280)
T cd05581          10 GEGSFSTVVLAKEKE----TNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLY-------   78 (280)
T ss_pred             cCCCceEEEEEEEcC----CCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEE-------
Confidence            345789999998632    244555555432211  112233344445566666 999987655433222222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               ++|++++|++|.+++...+ .++...++.++.||+.||.|||++|++|+||||+||+++.++.++++|||+
T Consensus        79 ---------lv~e~~~~~~L~~~l~~~~-~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~  148 (280)
T cd05581          79 ---------FVLEYAPNGELLQYIRKYG-SLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGT  148 (280)
T ss_pred             ---------EEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCcc
Confidence                     3899999999999998765 578889999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      +............. .+.                                                    ..++.     
T Consensus       149 ~~~~~~~~~~~~~~-~~~----------------------------------------------------~~~~~-----  170 (280)
T cd05581         149 AKVLDPNSSPESNK-GDA----------------------------------------------------TNIDS-----  170 (280)
T ss_pred             ccccCCccccccCC-CCC----------------------------------------------------ccccc-----
Confidence            87655321110000 000                                                    00000     


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCC---cH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFD---SE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~---~~  532 (1092)
                                               .............|+..|+|||.+.+..++.++|||||||++|+|+++..   ..
T Consensus       171 -------------------------~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  225 (280)
T cd05581         171 -------------------------QIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGS  225 (280)
T ss_pred             -------------------------cccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCc
Confidence                                     00000011124568889999999988889999999999999999998633   22


Q ss_pred             HHHHHHHHhcc-ccCCCCCCCCCChhHHHHHHhccccCCCCCCCH----HHHhhhhhh
Q 001366          533 RALAAAMSDLR-DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT----REILQSEVT  585 (1092)
Q Consensus       533 ~~~~~~~~~~~-~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa----~eiL~~~~~  585 (1092)
                      ........... ...+|   ...++.+.+|+.+||+.+|.+||++    .++|+||||
T Consensus       226 ~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         226 NEYLTFQKILKLEYSFP---PNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             cHHHHHHHHHhcCCCCC---CccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhcCCCC
Confidence            22221111111 11222   2337889999999999999999999    999999997

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.6e-23  Score=220.16  Aligned_cols=297  Identities=15%  Similarity=0.223  Sum_probs=217.0

Q ss_pred             eeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC
Q 001366          772 TGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG  851 (1092)
Q Consensus       772 ~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg  851 (1092)
                      ...|.+|...|++++|+.||++|||++.|++|+||++..-.+............+   --+.|.|.||....++++-...
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcceEEEEEccCC
Confidence            3467899999999999999999999999999999998753222211111122223   3478899999888888888888


Q ss_pred             cEEEEECCCC---ceEEE--------e-eccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec-CCceEE
Q 001366          852 VVKLWDACTG---QTVSH--------Y-IEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN-IANVCC  918 (1092)
Q Consensus       852 tV~IWD~~tg---~~i~~--------l-~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~-~~~V~s  918 (1092)
                      ++++|.....   .....        | +.|.-.+-++-... ++.+|+|++.|.+|.+||++ |+.+.++.. ...-..
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~  233 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD  233 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence            9999986532   21111        1 12445555655554 67889999999999999999 899988874 556777


Q ss_pred             EEEccCCCeEEEEEECCCeEEEEEcCCCC-------cceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCC
Q 001366          919 VQFSAHSSHLLAFGSADYRTYCYDLRNAR-------APWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSH  990 (1092)
Q Consensus       919 l~fsp~~~~~latgs~Dg~I~vwDlr~~~-------~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~  990 (1092)
                      .+.+|+|. ++|+++..-.|++|.+--++       ..+..+.||+..|..++|+ +...++|.|.||+++|||+.-.=.
T Consensus       234 aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~  312 (420)
T KOG2096|consen  234 AAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE  312 (420)
T ss_pred             eeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence            89999995 89999999999999874221       1356789999999999999 667899999999999999872100


Q ss_pred             CCCCCCceeEEE----cCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEE
Q 001366          991 TGPSTNACSLTF----SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVS 1066 (1092)
Q Consensus       991 ~~~~~~~~~~~l----~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~ 1066 (1092)
                      .. .....+++.    ..-...--.++++|.|+.||... ...+++|....++....+             ...|...|.
T Consensus       313 ~~-qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~-------------e~~h~~~Is  377 (420)
T KOG2096|consen  313 AG-QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL-------------EDIHSTTIS  377 (420)
T ss_pred             cC-CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH-------------HHhhcCcee
Confidence            00 011112211    11222233789999999887655 457999988776654333             256888999


Q ss_pred             EEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1067 SVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1067 sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      +|+|+++|+++||+| |..++|+.
T Consensus       378 ~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  378 SISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             eEEecCCCcEEeeec-ceeeeeec
Confidence            999999999999987 67787764

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.92  E-value=1e-25  Score=264.67  Aligned_cols=237  Identities=17%  Similarity=0.207  Sum_probs=170.8

Q ss_pred             ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhcc-CCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVAS-NASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +.++||+|...      ++.+|+|.+..+    -..++.+++.++.. ++|||++..+-.-..+..+++           
T Consensus       522 ~Gt~Vf~G~ye------~R~VAVKrll~e----~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YI-----------  580 (903)
T KOG1027|consen  522 NGTVVFRGVYE------GREVAVKRLLEE----FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYI-----------  580 (903)
T ss_pred             CCcEEEEEeeC------CceehHHHHhhH----hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEE-----------
Confidence            45799999983      567777666432    34566777777665 599999986554444444442           


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC-----CcEEEec
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKG---KRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS-----NQVKYIG  372 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~---~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~-----~~vkl~D  372 (1092)
                           ..|.|. .+|.|+++..+...   .....+.++.|+++||++||+.+||||||||.||||+..     ..++|+|
T Consensus       581 -----alELC~-~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSD  654 (903)
T KOG1027|consen  581 -----ALELCA-CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISD  654 (903)
T ss_pred             -----EehHhh-hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecc
Confidence                 466665 69999997742221   213568899999999999999999999999999999862     4589999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||+++.+...                                                                      
T Consensus       655 fglsKkl~~~----------------------------------------------------------------------  664 (903)
T KOG1027|consen  655 FGLSKKLAGG----------------------------------------------------------------------  664 (903)
T ss_pred             cccccccCCC----------------------------------------------------------------------
Confidence            9999986610                                                                      


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC----
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR----  528 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~----  528 (1092)
                                         .+           .....+...||..|+|||++....-+.++|||||||++|+.+++    
T Consensus       665 -------------------~s-----------S~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~Hp  714 (903)
T KOG1027|consen  665 -------------------KS-----------SFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHP  714 (903)
T ss_pred             -------------------cc-----------hhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccC
Confidence                               00           01113367799999999999998888999999999999999984    


Q ss_pred             CCcHHHHHHHHHhccccCCCCCCCCCCh--hHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 FDSERALAAAMSDLRDRILPPSFLSENP--KEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |.....+..-  +++. ..--..+...+  +..+||.+||+++|..||+|.++|.||+|-..
T Consensus       715 FGd~~~R~~N--Il~~-~~~L~~L~~~~d~eA~dLI~~ml~~dP~~RPsa~~VL~HPlFW~~  773 (903)
T KOG1027|consen  715 FGDSLERQAN--ILTG-NYTLVHLEPLPDCEAKDLISRMLNPDPQLRPSATDVLNHPLFWDS  773 (903)
T ss_pred             CCchHHhhhh--hhcC-ccceeeeccCchHHHHHHHHHhcCCCcccCCCHHHHhCCCccCCh
Confidence            5444333222  2221 11111111122  67799999999999999999999999999874

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=6.1e-23  Score=245.31  Aligned_cols=223  Identities=16%  Similarity=0.246  Sum_probs=177.8

Q ss_pred             EECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc--------eeeeEe-cCCceE
Q 001366          847 ADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN--------SLATIK-NIANVC  917 (1092)
Q Consensus       847 gs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~--------~l~~l~-~~~~V~  917 (1092)
                      |+.++.|++|+..+...+..+.+|...|++++|+|.++.+||||+.|++|+|||+.++.        ++..+. |...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            66789999999888888889999999999999999658899999999999999998642        233444 667899


Q ss_pred             EEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCC
Q 001366          918 CVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTN  996 (1092)
Q Consensus       918 sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~  996 (1092)
                      +++|+|++..+|++|+.|++|++||++++.. ...+. |...|.+++|+ ++..|++++.|++|+|||++        .+
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~R--------sg  199 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR--------KQ  199 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECC--------CC
Confidence            9999999877788999999999999998764 33443 56789999998 77788889999999999999        45


Q ss_pred             ceeEEEcCCCCCeEE-----EEEecCCCEEEEEecCC----cEEEEeCCC-CCceeeeeccccCCCCCccccCCCCCCEE
Q 001366          997 ACSLTFSGHTNEKNF-----VGLSTADGYIACGSESN----EVYAYHRSL-PMPITSYKFGSIDPISGKETDDDNGLFVS 1066 (1092)
Q Consensus       997 ~~~~~l~~h~~~V~~-----v~~spdg~~lasgs~Dg----~I~Iwd~~~-~~~i~~~~~~~~~~i~~~~~~~~h~~~V~ 1066 (1092)
                      ..+.++.+|.+.+..     ..|++++.+|++++.|+    .|+|||+.. ..++.....            +.+...+.
T Consensus       200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l------------d~~~~~L~  267 (568)
T PTZ00420        200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI------------DNASAPLI  267 (568)
T ss_pred             cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe------------cCCccceE
Confidence            567788899876543     34568889999988764    799999874 556654431            22233333


Q ss_pred             EEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1067 SVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1067 sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .....+++.++++|+.|+.|++|++
T Consensus       268 p~~D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        268 PHYDESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             EeeeCCCCCEEEEEECCCeEEEEEc
Confidence            3434556889999999999999996

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.92  E-value=3.1e-25  Score=250.50  Aligned_cols=258  Identities=18%  Similarity=0.170  Sum_probs=172.7

Q ss_pred             HHHhhhcc--ccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCC-CCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNG-SLDL  289 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  289 (1092)
                      |.+.+.++  +.|.||+|...+    .+..++.|+..... ..........+..++...+|||++.+........ ....
T Consensus         9 ~~~~~~lg~g~~g~v~~~~~~~----~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           9 FDIIGQIGEGTYGQVYKARDKD----TGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hheeeeecccCCEEEEEEEECC----CCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            44444443  679999999743    23445554432211 1222233345566777889999998655433221 0000


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                      ....+.       ...+++|+.| +|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+|
T Consensus        85 ~~~~~~-------~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~k  156 (302)
T cd07864          85 KKDKGA-------FYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIK  156 (302)
T ss_pred             cccCCc-------EEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEE
Confidence            000001       1247889887 78888876655688889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++.......                                                                 
T Consensus       157 l~dfg~~~~~~~~~~-----------------------------------------------------------------  171 (302)
T cd07864         157 LADFGLARLYNSEES-----------------------------------------------------------------  171 (302)
T ss_pred             eCcccccccccCCcc-----------------------------------------------------------------
Confidence            999998876431000                                                                 


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                           .......++..|+|||.+.+ ..++.++|||||||++|||+++
T Consensus       172 -------------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g  214 (302)
T cd07864         172 -------------------------------------RPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTK  214 (302)
T ss_pred             -------------------------------------cccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhC
Confidence                                                 00012345677999998876 4578999999999999999986


Q ss_pred             ---CCcHHHHHHH--HHhccccCCC--------------------------CCCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          529 ---FDSERALAAA--MSDLRDRILP--------------------------PSFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       529 ---f~~~~~~~~~--~~~~~~~~~p--------------------------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                         |.........  +........+                          ..+...++.+.+|+.+||+.+|.+||++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~  294 (302)
T cd07864         215 KPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAE  294 (302)
T ss_pred             CCCCCCCChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHH
Confidence               3322221111  1111111111                          01223567889999999999999999999


Q ss_pred             HHhhhhhh
Q 001366          578 EILQSEVT  585 (1092)
Q Consensus       578 eiL~~~~~  585 (1092)
                      +++.||||
T Consensus       295 ~il~~~~~  302 (302)
T cd07864         295 EALNSPWL  302 (302)
T ss_pred             HHhcCCCC
Confidence            99999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3e-24  Score=218.85  Aligned_cols=247  Identities=20%  Similarity=0.280  Sum_probs=196.6

Q ss_pred             cCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCC---ceEEEeeccCccEEEEEEe-cCCCCEEEEEeCCCcEEEEec
Q 001366          826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTG---QTVSHYIEHEKRAWSVDFS-QVHPTKLASGSDDCSVKLWNI  901 (1092)
Q Consensus       826 ~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg---~~i~~l~~h~~~V~sv~fs-p~~~~~laSgs~Dg~I~iWDl  901 (1092)
                      .|...|.++...-+ +.+|||||.|++|+|+.+...   +.+.+|.+|.++||.++|. |.-|++|||||+||.|.||.-
T Consensus         9 ~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            46666666665555 889999999999999998764   4688999999999999995 545789999999999999998


Q ss_pred             CCCceeeeEe---cCCceEEEEEccCC-CeEEEEEECCCeEEEEEcCCCC--cceEEecCCCCCeEEEEEcCC-------
Q 001366          902 NEKNSLATIK---NIANVCCVQFSAHS-SHLLAFGSADYRTYCYDLRNAR--APWCVLAGHEKAVSYVKFLDS-------  968 (1092)
Q Consensus       902 ~~~~~l~~l~---~~~~V~sl~fsp~~-~~~latgs~Dg~I~vwDlr~~~--~~~~~l~~H~~~V~~v~fs~~-------  968 (1092)
                      ..++-.....   |.+.|++|+|.|.+ ..+|++++.||.|.|.+.++..  ..-.....|.-.|++++|.|.       
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            8874333222   67899999999975 2478999999999999988651  122445789999999999733       


Q ss_pred             --------CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCC----CEEEEEecCCcEEEEeCC
Q 001366          969 --------GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTAD----GYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       969 --------~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg----~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                              ..|+||+.|+.|+||+.....      ...-.++.+|...|+.++|.|.-    .+||++|.||+|.||-..
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDS------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcc------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence                    469999999999999998532      23345689999999999999973    489999999999999755


Q ss_pred             CCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1037 LPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1037 ~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      ....-..           ...+......++.+.|++.|++|+.++.|..|.+|.
T Consensus       242 ~e~e~wk-----------~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  242 EEYEPWK-----------KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             CccCccc-----------ccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            2111111           012233456899999999999999999999999996

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.92  E-value=3.9e-25  Score=248.42  Aligned_cols=250  Identities=18%  Similarity=0.150  Sum_probs=172.3

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccC---chhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM---PSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTG  294 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1092)
                      ..+|.|.||++....+.. .+..++.|++.....   .........+.+++... .|++++.+......+...+      
T Consensus         9 g~G~~g~v~~~~~~~~~~-~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~------   81 (290)
T cd05613           9 GTGAYGKVFLVRKVSGHD-SGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLH------   81 (290)
T ss_pred             ccCCcceEEEEEeccCCC-CCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEE------
Confidence            345789999876532111 245556655432211   11112223344555555 5888887655543332222      


Q ss_pred             CCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          295 VPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       295 ~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                                ++|||++|++|.++|.... .++...+..++.||+.||.|||++||+||||||+||+++.++.+|++|||
T Consensus        82 ----------lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg  150 (290)
T cd05613          82 ----------LILDYINGGELFTHLSQRE-RFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFG  150 (290)
T ss_pred             ----------EEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCc
Confidence                      3799999999999997664 46677889999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.......                                                                      
T Consensus       151 ~~~~~~~~~~----------------------------------------------------------------------  160 (290)
T cd05613         151 LSKEFHEDEV----------------------------------------------------------------------  160 (290)
T ss_pred             cceecccccc----------------------------------------------------------------------
Confidence            8865331000                                                                      


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC--CCCCccccchhhhHHHHHHcCCCCcH
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG--GVCTTSSNIYSLGVLFFELFGRFDSE  532 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~--~~~t~~sDIwSLGvll~ell~~f~~~  532 (1092)
                                                      .......|+..|+|||.+.+  ..++.++|||||||++|+|+++..+.
T Consensus       161 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~  208 (290)
T cd05613         161 --------------------------------ERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPF  208 (290)
T ss_pred             --------------------------------cccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCC
Confidence                                            00013467888999999876  34688999999999999999873221


Q ss_pred             H------HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhhh
Q 001366          533 R------ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEFQ  589 (1092)
Q Consensus       533 ~------~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~~  589 (1092)
                      .      ........+.. ..++.....++.+.+|+.+||..+|.+||     ++.+++.||||....
T Consensus       209 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~  275 (290)
T cd05613         209 TVDGEKNSQAEISRRILK-SEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKIN  275 (290)
T ss_pred             CcCCccccHHHHHHHhhc-cCCCCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcCcccccCC
Confidence            1      11111122211 11222334578899999999999999997     889999999997753

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=9.6e-24  Score=217.06  Aligned_cols=239  Identities=16%  Similarity=0.234  Sum_probs=202.5

Q ss_pred             eeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEE--eeccCccEEEEEEecCCCCEEEEEeCCCcEEEEe
Q 001366          823 VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSH--YIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN  900 (1092)
Q Consensus       823 ~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~--l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWD  900 (1092)
                      ...+|..+|.+|+|+-+ +..|++|+.|+++++|++...+....  +.+|++.|-.++|.|.++.+|++++.|.+|++||
T Consensus        15 ~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HhhhhhhcceEEEEccc-CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            34568899999999998 99999999999999999988755443  5689999999999999999999999999999999


Q ss_pred             cCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCe
Q 001366          901 INEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNK  979 (1092)
Q Consensus       901 l~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~  979 (1092)
                      ++++++...+.....-.-+.|+|+|. ++++|+.|..|...|.|+.+.. .. ..-...+.-+.|+ ++..++....-|+
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~-~~-~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIV-NE-EQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCC-EEEEecCcccEEEEEeccccee-eh-hcccceeeeeeecCCCCEEEEecCCce
Confidence            99999999998776666789999996 8999999999999999987532 22 2234567778887 6667766677799


Q ss_pred             EEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccC
Q 001366          980 LKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDD 1059 (1092)
Q Consensus       980 I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~ 1059 (1092)
                      |.|-...        .-+++.+++.|.....||.|+|+|+|+|+||.|..+-+||+..--++..+              .
T Consensus       171 v~ILsyp--------sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i--------------s  228 (313)
T KOG1407|consen  171 VEILSYP--------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI--------------S  228 (313)
T ss_pred             EEEEecc--------ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee--------------c
Confidence            9998877        34678899999999999999999999999999999999998754444333              3


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEecCCeEE
Q 001366         1060 DNGLFVSSVCWRRRSDMVVAANSSGCIK 1087 (1092)
Q Consensus      1060 ~h~~~V~sva~spd~~~Lasgs~DG~V~ 1087 (1092)
                      .+.-+|..|.|+.||++||+|+.|..|-
T Consensus       229 RldwpVRTlSFS~dg~~lASaSEDh~ID  256 (313)
T KOG1407|consen  229 RLDWPVRTLSFSHDGRMLASASEDHFID  256 (313)
T ss_pred             cccCceEEEEeccCcceeeccCccceEE
Confidence            4567899999999999999999999883

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.92  E-value=9.9e-25  Score=242.45  Aligned_cols=251  Identities=13%  Similarity=0.060  Sum_probs=169.9

Q ss_pred             hccccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|.|.||+|..... ...+..++.|++...- .........++...++...|||++.+++.........   ...++.
T Consensus         8 g~g~~g~v~~~~~~~~-~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~---~~~~~~   83 (273)
T cd05074           8 GKGEFGSVREAQLKSE-DGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKG---RLPIPM   83 (273)
T ss_pred             cCCCCCCEEeeEeecc-CCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCC---cccceE
Confidence            3457899999975211 1113455555553321 2223334455667888899999998776544322111   011122


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcC-----CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEec
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARG-----HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIG  372 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~-----~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~D  372 (1092)
                             .+++|+.+++|.+++....     ..++...++.++.||+.||+|||++||+||||||+||+++.++.+|++|
T Consensus        84 -------~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~d  156 (273)
T cd05074          84 -------VILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVAD  156 (273)
T ss_pred             -------EEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECc
Confidence                   2578999999999874321     2356778999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||+++........                                                                   
T Consensus       157 fg~~~~~~~~~~~-------------------------------------------------------------------  169 (273)
T cd05074         157 FGLSKKIYSGDYY-------------------------------------------------------------------  169 (273)
T ss_pred             ccccccccCCcce-------------------------------------------------------------------
Confidence            9988764310000                                                                   


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---  528 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---  528 (1092)
                                                        .......++..|++||.+.+..++.++|||||||++|||++ +   
T Consensus       170 ----------------------------------~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p  215 (273)
T cd05074         170 ----------------------------------RQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTP  215 (273)
T ss_pred             ----------------------------------ecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCC
Confidence                                              00001123456999999998889999999999999999997 4   


Q ss_pred             CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |...... .....+.....++.....++.+.+++.+||.++|++||++.++++.
T Consensus       216 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~  268 (273)
T cd05074         216 YAGVENS-EIYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQ  268 (273)
T ss_pred             CCCCCHH-HHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            3222221 2222222211122223456889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.92  E-value=2.5e-25  Score=258.22  Aligned_cols=192  Identities=19%  Similarity=0.171  Sum_probs=158.1

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      +.||.|-||+|+.    ++.|+.+|+|.+-.+...-...+--++...++..+|||||..++..-...+ +  +.++.|-.
T Consensus        22 G~Ga~g~V~rgrn----ketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~-~--~~~~~~vl   94 (732)
T KOG4250|consen   22 GKGAFGNVYRGRN----KETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFL-G--LVTRLPVL   94 (732)
T ss_pred             cCCccceeeeecc----cccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCcccc-C--cccccceE
Confidence            4568999999996    667899999998777767777777788888999999999987665443333 2  24455444


Q ss_pred             cccCCCcccccCCCCCHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC--Cc--EEEec
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNAR--GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS--NQ--VKYIG  372 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~--~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~--~~--vkl~D  372 (1092)
                             +||||.||||+..|++.  ..-+++.+.+.++..++.|+.|||.+||+||||||.||++-..  |+  .||+|
T Consensus        95 -------vmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtD  167 (732)
T KOG4250|consen   95 -------VMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTD  167 (732)
T ss_pred             -------EEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeec
Confidence                   79999999999999653  2357777999999999999999999999999999999999643  33  69999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||.||.+.+.                                                                      
T Consensus       168 fG~Arel~d~----------------------------------------------------------------------  177 (732)
T KOG4250|consen  168 FGAARELDDN----------------------------------------------------------------------  177 (732)
T ss_pred             ccccccCCCC----------------------------------------------------------------------
Confidence            9999986620                                                                      


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                        ..+++.+||+.|.+||++.. +.|+..+|.||+||++||..||
T Consensus       178 ----------------------------------s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG  220 (732)
T KOG4250|consen  178 ----------------------------------SLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATG  220 (732)
T ss_pred             ----------------------------------CeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhcc
Confidence                                              12448899999999999984 8899999999999999999996

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.92  E-value=6.6e-25  Score=240.26  Aligned_cols=240  Identities=18%  Similarity=0.171  Sum_probs=173.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...+    .++.++.|++......  ........+..+++...||+++.+......+...+         
T Consensus         3 ~G~~~~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~---------   69 (250)
T cd05123           3 KGSFGKVLLVRKKD----TGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLY---------   69 (250)
T ss_pred             CCCceEEEEEEECC----CCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeE---------
Confidence            46788999987632    2344455444222211  12233444556677888999998765543332222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+|+|+.|++|.+++...+ .+++.++..++.||+.||.|+|++|++|+||||+||+++.++.++++|||++.
T Consensus        70 -------~v~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~  141 (250)
T cd05123          70 -------LVLEYAPGGELFSHLSKEG-RFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAK  141 (250)
T ss_pred             -------EEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcce
Confidence                   3799999999999997664 46777999999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       142 ~~~~~~--------------------------------------------------------------------------  147 (250)
T cd05123         142 ELSSEG--------------------------------------------------------------------------  147 (250)
T ss_pred             ecccCC--------------------------------------------------------------------------
Confidence            643100                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                   .......++..|+|||.+.+..++.++|+|||||++|||+++   |.....
T Consensus       148 -----------------------------~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~  198 (250)
T cd05123         148 -----------------------------SRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR  198 (250)
T ss_pred             -----------------------------CcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH
Confidence                                         000134567789999999988889999999999999999986   433332


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH---HHHhhhhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT---REILQSEVT  585 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa---~eiL~~~~~  585 (1092)
                       ......+.... ++.....+..+.+|+.+||..||.+||++   .+++.||||
T Consensus       199 -~~~~~~~~~~~-~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~~~~f  250 (250)
T cd05123         199 -KEIYEKILKDP-LRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPFF  250 (250)
T ss_pred             -HHHHHHHhcCC-CCCCCCCCHHHHHHHHHHhcCCHhhCCCcccHHHHHhCCCC
Confidence             22222222211 22222336788999999999999999999   999999997

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2e-24  Score=244.93  Aligned_cols=249  Identities=20%  Similarity=0.297  Sum_probs=208.4

Q ss_pred             CCCCEE---EEEEc-CCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          778 SANVIC---SISFD-RDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       778 h~~~V~---sl~fs-pdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      |...|.   .+..+ |.++||.|||.||.|++|++........ ..+......|..+|+.+....+ ++.|+|+|.|-+|
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s-~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTV   97 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS-TPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTV   97 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc-cchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceE
Confidence            444444   44444 4677899999999999999875332111 1133444568899999988776 7899999999999


Q ss_pred             EEEECCCC--ceEEEeeccCccEEEEEE-ecCCCCEEEEEeCCCcEEEEecCCC--ceeeeEe----------cCCceEE
Q 001366          854 KLWDACTG--QTVSHYIEHEKRAWSVDF-SQVHPTKLASGSDDCSVKLWNINEK--NSLATIK----------NIANVCC  918 (1092)
Q Consensus       854 ~IWD~~tg--~~i~~l~~h~~~V~sv~f-sp~~~~~laSgs~Dg~I~iWDl~~~--~~l~~l~----------~~~~V~s  918 (1092)
                      ++|+...+  -|+.++..|.+-|.|++. .+ +..++||||.|+.|.+||++++  ..+.++.          +...|.+
T Consensus        98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS  176 (735)
T KOG0308|consen   98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS  176 (735)
T ss_pred             EEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence            99999887  578889999999999999 55 7889999999999999999987  3344332          3457999


Q ss_pred             EEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCc
Q 001366          919 VQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNA  997 (1092)
Q Consensus       919 l~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~  997 (1092)
                      ++.++.| .++++|+..+.+++||.|+.+. +..+.||+..|..+..+ ++..++|+|+||+|++||+.        ...
T Consensus       177 LA~N~t~-t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg--------qQr  246 (735)
T KOG0308|consen  177 LAMNQTG-TIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG--------QQR  246 (735)
T ss_pred             eecCCcc-eEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc--------ccc
Confidence            9999998 5999999999999999999875 56677999999999998 77799999999999999999        578


Q ss_pred             eeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCC
Q 001366          998 CSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPM 1039 (1092)
Q Consensus       998 ~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~ 1039 (1092)
                      |+.++..|...|+++..+|+=..+.+|+.|+.|+.=|+.+..
T Consensus       247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence            999999999999999999999999999999999999988753

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.1e-25  Score=263.62  Aligned_cols=241  Identities=18%  Similarity=0.149  Sum_probs=185.8

Q ss_pred             ccceeeeCCCCCccccccccccccccccccCchh--hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD--AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      -+|.||+|...+-.+. +....+.||.-.+...+  +..--++..|++...|||||+++....-+.++++          
T Consensus       498 aFGkVf~a~~~~l~p~-~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~M----------  566 (774)
T KOG1026|consen  498 AFGKVFLAEAYGLLPG-QDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCM----------  566 (774)
T ss_pred             hhhhhhhhhccCCCCC-ccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEE----------
Confidence            5899999999776655 44444444433333333  2334566778999999999998888777777774          


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCC---------C----CCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGH---------K----GKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~---------~----~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                            +.||+..|||.++|+.+..         .    ++..+.++|+.||+.|++||-++.+|||||-..|+||.+.-
T Consensus       567 ------vFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l  640 (774)
T KOG1026|consen  567 ------VFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENL  640 (774)
T ss_pred             ------EEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccce
Confidence                  8999999999999976532         2    66779999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .|||+|||++|+.-.++.+.                              ++++                          
T Consensus       641 ~VKIsDfGLsRdiYssDYYk------------------------------~~~~--------------------------  664 (774)
T KOG1026|consen  641 VVKISDFGLSRDIYSSDYYK------------------------------VRGN--------------------------  664 (774)
T ss_pred             EEEecccccchhhhhhhhhc------------------------------ccCC--------------------------
Confidence            99999999999865322210                              0000                          


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                                  +.+ -..|||||.|..++||.+|||||+||+|||++
T Consensus       665 --------------------------------------------t~l-PIRWMppEsIly~kFTteSDVWs~GVvLWEIF  699 (774)
T KOG1026|consen  665 --------------------------------------------TLL-PIRWMPPESILYGKFTTESDVWSFGVVLWEIF  699 (774)
T ss_pred             --------------------------------------------cee-eeecCCHHHhhcCcccchhhhhhhhhhhhhhh
Confidence                                                        001 12489999999999999999999999999999


Q ss_pred             C----CCCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          527 G----RFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       527 ~----~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      +    |+.+. ...+.+..++.+.+-+.....++++..|+..|++.+|++||++.||-.
T Consensus       700 syG~QPy~gl-Sn~EVIe~i~~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~  757 (774)
T KOG1026|consen  700 SYGKQPYYGL-SNQEVIECIRAGQLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIHS  757 (774)
T ss_pred             ccccCccccc-chHHHHHHHHcCCcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence            8    23333 234455556666666666777889999999999999999999999843

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.7e-23  Score=217.04  Aligned_cols=243  Identities=15%  Similarity=0.226  Sum_probs=202.5

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCC-CCEEEEEECCCc
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI-KNYLASADYDGV  852 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~LaSgs~Dgt  852 (1092)
                      .+..|..+|++++.+  +.++|+||.|.+|+|||+...       ........|.+.|+++.|.++. .+.|++|+.||.
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~-------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~  108 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKR-------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH  108 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccch-------hhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence            366899999999975  889999999999999999762       2233456789999999998862 348999999999


Q ss_pred             EEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEE
Q 001366          853 VKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latg  932 (1092)
                      |.+|++....++.++++|.+.|+.++.+| .+++.++.+.|+.++.||+-+|+.-..+.....-+.|.|+|.|. .|+.+
T Consensus       109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd-~F~v~  186 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD-HFVVS  186 (362)
T ss_pred             EEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC-EEEEE
Confidence            99999999999999999999999999999 88999999999999999999998877776655556699999997 45555


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEE
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v 1012 (1092)
                      .. ..|-+|-+.+.+.. .. ......+.++.|.++++|++|..|+.|++||..        ...+...+.+|.+.|-.+
T Consensus       187 ~~-~~i~i~q~d~A~v~-~~-i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~d--------s~~~~~~~~AH~~RVK~i  255 (362)
T KOG0294|consen  187 GR-NKIDIYQLDNASVF-RE-IENPKRILCATFLDGSELLVGGDNEWISLKDTD--------SDTPLTEFLAHENRVKDI  255 (362)
T ss_pred             ec-cEEEEEecccHhHh-hh-hhccccceeeeecCCceEEEecCCceEEEeccC--------CCccceeeecchhheeee
Confidence            54 45788888765421 11 122356889999999999999999999999998        356788899999999988


Q ss_pred             EE--ecCCCEEEEEecCCcEEEEeCCCC
Q 001366         1013 GL--STADGYIACGSESNEVYAYHRSLP 1038 (1092)
Q Consensus      1013 ~~--spdg~~lasgs~Dg~I~Iwd~~~~ 1038 (1092)
                      .+  .|++.||+++|.||.|+|||+...
T Consensus       256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  256 ASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEEecCCceEEEEeccCceEEEEEcccc
Confidence            74  456889999999999999998765

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.92  E-value=7.2e-25  Score=247.21  Aligned_cols=176  Identities=14%  Similarity=0.134  Sum_probs=127.1

Q ss_pred             ccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccC
Q 001366          306 QGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASL  385 (1092)
Q Consensus       306 ~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~  385 (1092)
                      .|+++ +.++.+.++... ..++..++.|+.||+.||+|||++||+||||||+|||++..+.++++|||+++.+......
T Consensus       105 ~~~~~-~~~~~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~  182 (294)
T PHA02882        105 LLEKL-VENTKEIFKRIK-CKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKH  182 (294)
T ss_pred             EEehh-ccCHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcc
Confidence            34443 346777776543 3456688999999999999999999999999999999999999999999999875411000


Q ss_pred             CCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccC
Q 001366          386 DIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNA  465 (1092)
Q Consensus       386 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  465 (1092)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (294)
T PHA02882        183 --------------------------------------------------------------------------------  182 (294)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHH------
Q 001366          466 GFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALA------  536 (1092)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~------  536 (1092)
                                      ............||+.|+|||.+.+..++.++|||||||+||||+++   |.......      
T Consensus       183 ----------------~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~  246 (294)
T PHA02882        183 ----------------IEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAA  246 (294)
T ss_pred             ----------------cccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHh
Confidence                            00000011134699999999999999999999999999999999986   43221111      


Q ss_pred             --HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          537 --AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       537 --~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                        .....+.....  .....++.+.+|+..|+..+|++||++.+|++
T Consensus       247 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~  291 (294)
T PHA02882        247 KCDFIKRLHEGKI--KIKNANKFIYDFIECVTKLSYEEKPDYDALIK  291 (294)
T ss_pred             HHHHHHHhhhhhh--ccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence              11122222111  12233577889999999999999999999986

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.92  E-value=2.2e-25  Score=257.63  Aligned_cols=243  Identities=16%  Similarity=0.140  Sum_probs=183.7

Q ss_pred             ccccceeeeCCCCCcccccccccccccccc--ccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVT--TTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      -+-+|.||+|.....-......+|.+...+  .....+...-.++.++++..+|||++.++..++.+.++++        
T Consensus       167 eGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~i--------  238 (474)
T KOG0194|consen  167 EGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLML--------  238 (474)
T ss_pred             cccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEE--------
Confidence            345899999998332110011145544433  2234456667888999999999999999998888888884        


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                              +||+|.||+|.++|+..+..++..+.+.++.+.+.||+|||++++|||||-..|+|++.++.+||+|||+++
T Consensus       239 --------vmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~  310 (474)
T KOG0194|consen  239 --------VMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSR  310 (474)
T ss_pred             --------EEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCcccccc
Confidence                    899999999999998887778888999999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ....-.+..                                                                       
T Consensus       311 ~~~~~~~~~-----------------------------------------------------------------------  319 (474)
T KOG0194|consen  311 AGSQYVMKK-----------------------------------------------------------------------  319 (474)
T ss_pred             CCcceeecc-----------------------------------------------------------------------
Confidence            632000000                                                                       


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC----CCCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG----RFDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~----~f~~~~  533 (1092)
                                                    .. ..+ -..|+|||.+..+.|++++||||+||++||+++    ||++..
T Consensus       320 ------------------------------~~-~kl-PirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~  367 (474)
T KOG0194|consen  320 ------------------------------FL-KKL-PIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMK  367 (474)
T ss_pred             ------------------------------cc-ccC-cceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCC
Confidence                                          00 000 123899999999999999999999999999997    366655


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ........+......+......+....++..|+..+|++||++.++.+
T Consensus       368 ~~~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~  415 (474)
T KOG0194|consen  368 NYEVKAKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKK  415 (474)
T ss_pred             HHHHHHHHHhcCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHH
Confidence            554444443433333333344566679999999999999999998876

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=7.1e-24  Score=248.91  Aligned_cols=245  Identities=16%  Similarity=0.229  Sum_probs=197.9

Q ss_pred             cCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC--------------------------------C------------
Q 001366          826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT--------------------------------G------------  861 (1092)
Q Consensus       826 ~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t--------------------------------g------------  861 (1092)
                      .|.+.|+++.|++| |.+||+||.||.|+||.+..                                .            
T Consensus       265 ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            58999999999999 99999999999999998644                                0            


Q ss_pred             ----------------ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCC
Q 001366          862 ----------------QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHS  925 (1092)
Q Consensus       862 ----------------~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~  925 (1092)
                                      ++++.|.||...|.++.|+.  .++|+|+|.|.|||+|++....|+..|.|..-|+||+|+|.+
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvD  421 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVD  421 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccC
Confidence                            23456778999999999996  578999999999999999999999999999999999999998


Q ss_pred             CeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEE---
Q 001366          926 SHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLT--- 1001 (1092)
Q Consensus       926 ~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~--- 1001 (1092)
                      .++|++|+-||.|+||++...+.  .....-...|++++|. +|+..+.|+.+|.+++|++.......   ...+..   
T Consensus       422 DryFiSGSLD~KvRiWsI~d~~V--v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~---~~~I~~~~~  496 (712)
T KOG0283|consen  422 DRYFISGSLDGKVRLWSISDKKV--VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS---DFHIRLHNK  496 (712)
T ss_pred             CCcEeecccccceEEeecCcCee--EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE---eeeEeeccC
Confidence            89999999999999999987542  2333344789999999 77889999999999999998543211   000000   


Q ss_pred             -EcCCCCCeEEEEEecCC-CEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEE
Q 001366         1002 -FSGHTNEKNFVGLSTAD-GYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVA 1079 (1092)
Q Consensus      1002 -l~~h~~~V~~v~~spdg-~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Las 1079 (1092)
                       -..|. .|+.+.|.|.. .-|+..+.|..|+|||.....++..++- .           .....-..-.|+.||++|++
T Consensus       497 Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG-~-----------~n~~SQ~~Asfs~Dgk~IVs  563 (712)
T KOG0283|consen  497 KKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG-F-----------RNTSSQISASFSSDGKHIVS  563 (712)
T ss_pred             ccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc-c-----------ccCCcceeeeEccCCCEEEE
Confidence             01123 79999998854 3577888999999999987777776651 0           01122355689999999999


Q ss_pred             EecCCeEEEEEc
Q 001366         1080 ANSSGCIKVLQM 1091 (1092)
Q Consensus      1080 gs~DG~V~vW~l 1091 (1092)
                      |+.|..|+||++
T Consensus       564 ~seDs~VYiW~~  575 (712)
T KOG0283|consen  564 ASEDSWVYIWKN  575 (712)
T ss_pred             eecCceEEEEeC
Confidence            999999999986

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=2.7e-24  Score=225.38  Aligned_cols=275  Identities=16%  Similarity=0.241  Sum_probs=232.2

Q ss_pred             cCCCCc--EEeEcCCeEEEEEcccceEEeeEEe---eeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCc
Q 001366          742 QNPTDR--LGAFFDGLCKYARYSKFEVQGMLRT---GEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSV  816 (1092)
Q Consensus       742 ~~~~~~--l~~~~D~~~k~w~~~~~~~~~~l~~---~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~  816 (1092)
                      ++|++.  ++++-||.+.+|+|...+....++.   ..|.-+.++|.|+.|+.|.+.||+|+.||+|+||.+.+..    
T Consensus       221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~----  296 (508)
T KOG0275|consen  221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ----  296 (508)
T ss_pred             eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch----
Confidence            456654  4778999999999988777666542   2455689999999999999999999999999999987621    


Q ss_pred             ccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcE
Q 001366          817 DVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSV  896 (1092)
Q Consensus       817 ~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I  896 (1092)
                        ........|...|+|+.|+.| +..++++|.|.+|+|--+.+|++++.|++|+.-|+.+.|.+ +|..++++|.||+|
T Consensus       297 --ClRrFdrAHtkGvt~l~FSrD-~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtv  372 (508)
T KOG0275|consen  297 --CLRRFDRAHTKGVTCLSFSRD-NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTV  372 (508)
T ss_pred             --HHHHhhhhhccCeeEEEEccC-cchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccE
Confidence              122233468999999999998 88899999999999999999999999999999999999999 99999999999999


Q ss_pred             EEEecCCCceeeeEec---CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEec-C--C-CCCeEEEEEcCCC
Q 001366          897 KLWNINEKNSLATIKN---IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA-G--H-EKAVSYVKFLDSG  969 (1092)
Q Consensus       897 ~iWDl~~~~~l~~l~~---~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~-~--H-~~~V~~v~fs~~~  969 (1092)
                      ++|+..+..|+.+++.   ..+|+++-.-|.++..++++...++|++.++...  .+..+. |  . ...|.++--..+.
T Consensus       373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVrsfsSGkREgGdFi~~~lSpkGe  450 (508)
T KOG0275|consen  373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKREGGDFINAILSPKGE  450 (508)
T ss_pred             EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEeeeccCCccCCceEEEEecCCCc
Confidence            9999999999999984   4579999999988888999999999999998743  344442 2  1 2234444333788


Q ss_pred             EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          970 TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       970 ~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      ++++.+.|+.+..|.+.        ++..-.++.-|...+..++-+|..+.||+-++||.+++|.
T Consensus       451 wiYcigED~vlYCF~~~--------sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  451 WIYCIGEDGVLYCFSVL--------SGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEEccCcEEEEEEee--------cCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999998        4667788889999999999999999999999999999993

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=6e-22  Score=199.07  Aligned_cols=291  Identities=15%  Similarity=0.242  Sum_probs=226.1

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCC----CCccccccee----eecCCCCeEEEEEecCCCCEEEEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFN----DSVDVYYPAV----EMSNRSKLSCVCWNNYIKNYLASAD  848 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~----~~~~~~~~~~----~~~h~~~V~~v~~sp~~~~~LaSgs  848 (1092)
                      ..+..|.+++|+|.|.+.|+|+..++++|..+.....    .......|.+    ...|++.|.|++|+|+ +.+|++||
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliatgs  108 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIATGS  108 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEecC
Confidence            3467899999999999999999999999987654211    1111222232    3458899999999998 99999999


Q ss_pred             CCCcEEEEECCCCce-----EEEeeccCccEEEEEEecC---CCCEEEEEe-CCCcEEEEecCCCceeeeEe-cCCceEE
Q 001366          849 YDGVVKLWDACTGQT-----VSHYIEHEKRAWSVDFSQV---HPTKLASGS-DDCSVKLWNINEKNSLATIK-NIANVCC  918 (1092)
Q Consensus       849 ~DgtV~IWD~~tg~~-----i~~l~~h~~~V~sv~fsp~---~~~~laSgs-~Dg~I~iWDl~~~~~l~~l~-~~~~V~s  918 (1092)
                      .|++|++.-.+...+     -..|.-|.+.|..++|...   .+.+|++++ .|..|.+-|..+|...+.+. |.+.|.+
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila  188 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA  188 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence            999999976654322     2356779999999999752   245677766 57888899999999988887 4566765


Q ss_pred             EEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecC-------CCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCC
Q 001366          919 VQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG-------HEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSH  990 (1092)
Q Consensus       919 l~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~-------H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~  990 (1092)
                      +- +-++ .++++|+.|.+|++||+|-... +.++..       ..++|.+|+.. .+..|++|-.|....+||++    
T Consensus       189 ly-swn~-~m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir----  261 (350)
T KOG0641|consen  189 LY-SWNG-AMFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR----  261 (350)
T ss_pred             EE-EecC-cEEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee----
Confidence            52 2234 5899999999999999996543 333321       23678999988 56678899999999999999    


Q ss_pred             CCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCC--ceeeeeccccCCCCCccccCCCCCCEEEE
Q 001366          991 TGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPM--PITSYKFGSIDPISGKETDDDNGLFVSSV 1068 (1092)
Q Consensus       991 ~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~--~i~~~~~~~~~~i~~~~~~~~h~~~V~sv 1068 (1092)
                          .+..++.+..|+..|.+|.|||.--|+++||.|..|++-|+..--  .+..            .+...|...+-.+
T Consensus       262 ----g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~------------~vv~ehkdk~i~~  325 (350)
T KOG0641|consen  262 ----GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPI------------MVVAEHKDKAIQC  325 (350)
T ss_pred             ----CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCce------------EEEEeccCceEEE
Confidence                467889999999999999999999999999999999999875321  1111            1234677888999


Q ss_pred             EEeCCCCEEEEEecCCeEEEEEc
Q 001366         1069 CWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1069 a~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .|+|..-.+++.+.|.++.+|-+
T Consensus       326 rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  326 RWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             EecCccceeeeccCcceEEEecc
Confidence            99999999999999999999964

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.91  E-value=8.4e-25  Score=245.43  Aligned_cols=248  Identities=19%  Similarity=0.168  Sum_probs=168.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC---chhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM---PSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      .+|.|.||++...... ..+..++.|+......   .........+..++... .||+++.+......+...+       
T Consensus        10 ~G~~~~vy~~~~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~-------   81 (288)
T cd05583          10 TGAYGKVFLVRKVGGH-DAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH-------   81 (288)
T ss_pred             cCCCceEEEEEEeccc-cCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE-------
Confidence            3467899987642111 1123344443321111   11122233445555566 5899887665543322222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               .+|+|+.|++|.+++...+ .++..+++.++.|++.+|+|||+.|++||||||+||+++.++.++++|||+
T Consensus        82 ---------lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~  151 (288)
T cd05583          82 ---------LILDYVNGGELFTHLYQRE-HFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGL  151 (288)
T ss_pred             ---------EEEecCCCCcHHHHHhhcC-CcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECcc
Confidence                     3799999999999997653 467778999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++.......                                                                       
T Consensus       152 ~~~~~~~~~-----------------------------------------------------------------------  160 (288)
T cd05583         152 SKEFLAEEE-----------------------------------------------------------------------  160 (288)
T ss_pred             ccccccccc-----------------------------------------------------------------------
Confidence            765431000                                                                       


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC--CCccccchhhhHHHHHHcCCCCcHH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV--CTTSSNIYSLGVLFFELFGRFDSER  533 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~--~t~~sDIwSLGvll~ell~~f~~~~  533 (1092)
                                                     .......|+..|+|||.+.+..  .+.++||||||+++|||+++..+..
T Consensus       161 -------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~  209 (288)
T cd05583         161 -------------------------------ERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFT  209 (288)
T ss_pred             -------------------------------cccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcc
Confidence                                           0000235778899999987754  7889999999999999999633321


Q ss_pred             ------HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC---HHHHhhhhhhhhh
Q 001366          534 ------ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT---TREILQSEVTNEF  588 (1092)
Q Consensus       534 ------~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps---a~eiL~~~~~~~~  588 (1092)
                            ........... ..++.....++.+.+|+.+||.++|++|||   +.++|+||||...
T Consensus       210 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~~~~~~  272 (288)
T cd05583         210 VDGEQNSQSEISRRILK-SKPPFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHPFFQGI  272 (288)
T ss_pred             cCcccchHHHHHHHHHc-cCCCCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCcccccC
Confidence                  11111111111 122333345788999999999999999998   5678999999764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.91  E-value=1.9e-23  Score=226.60  Aligned_cols=260  Identities=17%  Similarity=0.208  Sum_probs=212.3

Q ss_pred             EeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCC
Q 001366          749 GAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNR  828 (1092)
Q Consensus       749 ~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~  828 (1092)
                      .+.+|..|++|+..-..   .-....|.+..+.|++++|++++.++++++.|+.+++|+++.       .......-+|.
T Consensus       192 tgg~Dr~Ik~W~v~~~k---~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-------~r~~~TLsGHt  261 (459)
T KOG0288|consen  192 TGGSDRIIKLWNVLGEK---SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-------LRLRHTLSGHT  261 (459)
T ss_pred             hcchhhhhhhhhcccch---hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-------hhhhhhhcccc
Confidence            66789999999854322   112345778889999999999999999999999999999875       23344556799


Q ss_pred             CCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceee
Q 001366          829 SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLA  908 (1092)
Q Consensus       829 ~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~  908 (1092)
                      .+|+++.|... ...+++|+.|.+|++||+....|.+++- ....+..|..++   ..++||-.|++|++||+++..+..
T Consensus       262 dkVt~ak~~~~-~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~  336 (459)
T KOG0288|consen  262 DKVTAAKFKLS-HSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTR  336 (459)
T ss_pred             cceeeehhhcc-ccceeeccccchhhhhhhhhhheecccc-ccccccceEecc---eeeeecccccceEEEeccCCceee
Confidence            99999999886 4459999999999999999988888765 344566666653   578999999999999999999999


Q ss_pred             eEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecC----CCCCeEEEEEc-CCCEEEEEECCCeEEEE
Q 001366          909 TIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG----HEKAVSYVKFL-DSGTLVTASTDNKLKLW  983 (1092)
Q Consensus       909 ~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~----H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vW  983 (1092)
                      +....+.|+++..++++. -+.+.+.|.++.+.|+|+... ..++.+    ..+.++.+.|+ ++.|+++||.||.|+||
T Consensus       337 sv~~gg~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI-~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW  414 (459)
T KOG0288|consen  337 SVPLGGRVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEI-RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIW  414 (459)
T ss_pred             EeecCcceeeEeeccCCe-EEeeecCCCceeeeecccccE-EEEeeccccccccccceeEECCCCceeeeccCCCcEEEE
Confidence            999999999999999996 566669999999999998653 233322    12348889999 66789999999999999


Q ss_pred             EcCCCCCCCCCCCceeEEEcCCCC--CeEEEEEecCCCEEEEEecCCcEEEE
Q 001366          984 DLKRTSHTGPSTNACSLTFSGHTN--EKNFVGLSTADGYIACGSESNEVYAY 1033 (1092)
Q Consensus       984 Dl~~~~~~~~~~~~~~~~l~~h~~--~V~~v~~spdg~~lasgs~Dg~I~Iw 1033 (1092)
                      ++.        ++++...+.....  .|++++|+|.|.++++++.++.+.+|
T Consensus       415 ~v~--------tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  415 SVF--------TGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             Ecc--------CceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            998        4556666665333  59999999999999999999999999

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=6.3e-23  Score=213.59  Aligned_cols=298  Identities=17%  Similarity=0.227  Sum_probs=227.0

Q ss_pred             cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCCCCc----ccc----cceeeecCCCCeEEEEEecCCCCEEEE
Q 001366          776 NNSANVICSISFDR-DEDHFAAAGVSKKIKIFEFNALFNDSV----DVY----YPAVEMSNRSKLSCVCWNNYIKNYLAS  846 (1092)
Q Consensus       776 ~~h~~~V~sl~fsp-dg~~latgg~D~~I~Iwd~~~~~~~~~----~~~----~~~~~~~h~~~V~~v~~sp~~~~~LaS  846 (1092)
                      ..|.+.|+++...+ .|+|+++|+.||.|.|||+......+.    -.+    ......+|+-.|.++.|.|-+..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            36889999999998 589999999999999999975321110    001    111234578889999999988889999


Q ss_pred             EECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCC--CEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEcc
Q 001366          847 ADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP--TKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSA  923 (1092)
Q Consensus       847 gs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~--~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp  923 (1092)
                      +|.|.++++||.++-+....|+ ..+.|++-+++|...  .++|+|..|-.|++.|+.+|.+-+++. |...|.+|.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            9999999999999999888886 577888888888533  468889999999999999999999998 678999999999


Q ss_pred             CCCeEEEEEECCCeEEEEEcCCCCcceE--------------EecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCC
Q 001366          924 HSSHLLAFGSADYRTYCYDLRNARAPWC--------------VLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRT  988 (1092)
Q Consensus       924 ~~~~~latgs~Dg~I~vwDlr~~~~~~~--------------~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~  988 (1092)
                      .....|++|+.||.|++||+|...-...              +-..|.+.|..++|. ++.++++++.|..+++|+..++
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence            9989999999999999999986422222              234677889999997 8889999999999999999876


Q ss_pred             CCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEE
Q 001366          989 SHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSV 1068 (1092)
Q Consensus       989 ~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sv 1068 (1092)
                      .......+.....-..|  ....+. +.+...++---.++.+.++++-.+..|...              ..|...|.+.
T Consensus       279 ~ntl~~~g~~~~n~~~~--~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l--------------~~h~k~i~c~  341 (397)
T KOG4283|consen  279 RNTLREFGPIIHNQTTS--FAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL--------------STHLKRINCA  341 (397)
T ss_pred             ccccccccccccccccc--ceEEEe-ecccceEEEEecCCeEEEEEccCceEEEee--------------ecccceeeEE
Confidence            54322222211111111  111122 333334444445577888887777766554              3456779999


Q ss_pred             EEeCCCCEEEEEecCCeEEEEEc
Q 001366         1069 CWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1069 a~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++.|+=+.+.+|..||.|..|-.
T Consensus       342 ~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  342 AYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eecCchhhhhccccCCccccccc
Confidence            99999999999999999998853

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.91  E-value=9.9e-25  Score=250.09  Aligned_cols=247  Identities=17%  Similarity=0.230  Sum_probs=169.2

Q ss_pred             hccccceeeeCCCCCcccccccccccccccc-ccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVT-TTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|.|.||++....    .+..++.|...- ............+...+...+|||++.+..........          
T Consensus        19 g~g~~g~v~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~----------   84 (328)
T cd07856          19 GMGAFGLVCSARDQL----TGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLED----------   84 (328)
T ss_pred             cccCCeEEEEEEECC----CCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc----------
Confidence            335789999987532    244555543321 11111122233456677788999999765543321111          


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                           .-++|+|+ |++|.++++..  .++...+..++.||++||.|||++||+||||||+||+++.++.+|++|||+++
T Consensus        85 -----~~lv~e~~-~~~L~~~~~~~--~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~  156 (328)
T cd07856          85 -----IYFVTELL-GTDLHRLLTSR--PLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLAR  156 (328)
T ss_pred             -----EEEEeehh-ccCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCcccccc
Confidence                 11367887 67999988754  45666788999999999999999999999999999999999999999999875


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ....                                                                            
T Consensus       157 ~~~~----------------------------------------------------------------------------  160 (328)
T cd07856         157 IQDP----------------------------------------------------------------------------  160 (328)
T ss_pred             ccCC----------------------------------------------------------------------------
Confidence            4220                                                                            


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    ......++..|+|||.+.+ ..++.++|||||||++|||+++   |....
T Consensus       161 ------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~  210 (328)
T cd07856         161 ------------------------------QMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKD  210 (328)
T ss_pred             ------------------------------CcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                          0012356778999999876 5689999999999999999986   43322


Q ss_pred             HHHH--H------------------------HHhcccc-CCC--CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          534 ALAA--A------------------------MSDLRDR-ILP--PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       534 ~~~~--~------------------------~~~~~~~-~~p--~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      ....  .                        +..+... ..|  ......++.+.+|+.+||.++|++||++.+++.|||
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~~~  290 (328)
T cd07856         211 HVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAHPY  290 (328)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCCc
Confidence            1100  0                        0001100 111  112345678999999999999999999999999999


Q ss_pred             hhhhhccch
Q 001366          585 TNEFQEVCA  593 (1092)
Q Consensus       585 ~~~~~~~~~  593 (1092)
                      |...+.+..
T Consensus       291 ~~~~~~~~~  299 (328)
T cd07856         291 LAPYHDPTD  299 (328)
T ss_pred             cccccCCcc
Confidence            976655443

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.91  E-value=4.7e-24  Score=217.55  Aligned_cols=267  Identities=14%  Similarity=0.175  Sum_probs=218.3

Q ss_pred             cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeec
Q 001366          747 RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       747 ~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~  826 (1092)
                      .++++-|+...+-.-...+..     ++|.+|...|.+..++.+...-|+++.|-+.+|||.-+..        ....+.
T Consensus        32 lisa~kd~~pmlr~g~tgdwi-----gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd--------elhsf~   98 (334)
T KOG0278|consen   32 LISASKDGKPMLRNGDTGDWI-----GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD--------ELHSFE   98 (334)
T ss_pred             EEEeccCCCchhccCCCCCcE-----EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh--------hhhhhh
Confidence            457777776655443333333     3577999999999999999999999999999999965421        123456


Q ss_pred             CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc-eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 001366          827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ-TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN  905 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~-~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~  905 (1092)
                      |+.-|.+++|+.| .++|++|+.++.+||||++..+ ....+.+|++.|..+-|+. ..+.++|+++|++||+||.++++
T Consensus        99 hkhivk~~af~~d-s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt  176 (334)
T KOG0278|consen   99 HKHIVKAVAFSQD-SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGT  176 (334)
T ss_pred             hhheeeeEEeccc-chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCc
Confidence            8888999999998 8899999999999999998764 6778899999999999998 66778888999999999999999


Q ss_pred             eeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEE
Q 001366          906 SLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWD  984 (1092)
Q Consensus       906 ~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWD  984 (1092)
                      .++++..+.+|+++..+++|.  +++-...+.|.+||..+... ++.+. -...|.+...+ +.+.+++|+.|..++.||
T Consensus       177 ~v~sL~~~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~~-lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfD  252 (334)
T KOG0278|consen  177 EVQSLEFNSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFGL-LKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFD  252 (334)
T ss_pred             EEEEEecCCCCcceeeccCCC--EEEEecCceeEEeccccccc-eeecc-CccccccccccCCCceEEecCcceEEEEEe
Confidence            999999999999999999995  55666778999999988654 33332 23457777777 446788999999999999


Q ss_pred             cCCCCCCCCCCCceeEEE-cCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCc
Q 001366          985 LKRTSHTGPSTNACSLTF-SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       985 l~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                      ..++.        .+-.+ ++|-++|.||.|+|+|...|+||+||+|++|....++.
T Consensus       253 y~Tge--------Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  253 YNTGE--------EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ccCCc--------eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            99644        33444 79999999999999999999999999999998765543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-22  Score=222.13  Aligned_cols=292  Identities=14%  Similarity=0.176  Sum_probs=230.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEE
Q 001366          778 SANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWD  857 (1092)
Q Consensus       778 h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD  857 (1092)
                      ..+.|++|.|+|.-.+|++||.|++++||.++...+..+..     ..-...+|.+.+|.|++...+++++.-...+.||
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS-----~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS-----IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhee-----eeeccCccceeeecCCCceEEEecccceEEEEee
Confidence            45689999999999999999999999999998744322211     1123688999999998555999999999999999


Q ss_pred             CCCCce--EEEeeccC-ccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEEC
Q 001366          858 ACTGQT--VSHYIEHE-KRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSA  934 (1092)
Q Consensus       858 ~~tg~~--i~~l~~h~-~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~  934 (1092)
                      +.+.+.  +....++. ..+.....++ ++++|+..+..|.|.+....++..+.+++..+.|..+.|+.++. .|++.+.
T Consensus       287 le~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk-~l~~~~~  364 (514)
T KOG2055|consen  287 LETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK-ELLASGG  364 (514)
T ss_pred             ccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCc-EEEEEcC
Confidence            998864  33444554 3467788888 88899999999999999999999999999999999999999995 6666777


Q ss_pred             CCeEEEEEcCCCCcceEEecCCCCCe--EEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE
Q 001366          935 DYRTYCYDLRNARAPWCVLAGHEKAV--SYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011 (1092)
Q Consensus       935 Dg~I~vwDlr~~~~~~~~l~~H~~~V--~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~ 1011 (1092)
                      +|.|++||++.... +..+.. .+.|  ++++.+ ++.+|++||..|.|.|||..+.-.  ....+++.++..-+..|++
T Consensus       365 ~GeV~v~nl~~~~~-~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~--s~~PkPik~~dNLtt~Its  440 (514)
T KOG2055|consen  365 TGEVYVWNLRQNSC-LHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA--STNPKPIKTVDNLTTAITS  440 (514)
T ss_pred             CceEEEEecCCcce-EEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhc--cCCCCchhhhhhhheeeee
Confidence            89999999998753 344432 2233  445555 788999999999999999764221  2245677788888889999


Q ss_pred             EEEecCCCEEEEEe--cCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEE
Q 001366         1012 VGLSTADGYIACGS--ESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVL 1089 (1092)
Q Consensus      1012 v~~spdg~~lasgs--~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW 1089 (1092)
                      +.|++|..+||.+|  .++.+++-++.+.....-++           .....-+.|++|+|+|.+.+||.|+.+|.|.+|
T Consensus       441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP-----------~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP-----------TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF  509 (514)
T ss_pred             eeeCcchhhhhhhhhccccceEEEeccceeeeccCC-----------CCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence            99999999988777  46789998876544332221           112234679999999999999999999999999


Q ss_pred             Ec
Q 001366         1090 QM 1091 (1092)
Q Consensus      1090 ~l 1091 (1092)
                      +|
T Consensus       510 kL  511 (514)
T KOG2055|consen  510 KL  511 (514)
T ss_pred             ee
Confidence            87

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.91  E-value=3.2e-24  Score=237.96  Aligned_cols=241  Identities=15%  Similarity=0.175  Sum_probs=165.3

Q ss_pred             hccccceeeeCCCCCccccccccccccccccc---------cCchhhHhhhhhhhhhc-cCCCCCCCccccceecCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTT---------TMPSDAALKAAGAMMVA-SNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      ..++.|.||+|.....   .+..++.|...-.         .........+.+..++. ...|||++........+...+
T Consensus         9 g~G~~~~v~~~~~~~~---~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~   85 (269)
T cd08528           9 GSGAFGCVYKVRKKNN---GQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLENDRLY   85 (269)
T ss_pred             cCCCCceEEEEEEcCC---CCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCCeEE
Confidence            3457899999987430   1233333322110         01111122333444444 368999987655543333222


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEcc
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~  364 (1092)
                                      ++|||++|++|.+++..   .+..++...++.++.|++.+|.|||+ .||+|+||||+||+++.
T Consensus        86 ----------------lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~  149 (269)
T cd08528          86 ----------------IVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGE  149 (269)
T ss_pred             ----------------EEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECC
Confidence                            38999999999999843   44567888899999999999999996 78999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.+|++|||++.......                                                             
T Consensus       150 ~~~~~l~dfg~~~~~~~~~-------------------------------------------------------------  168 (269)
T cd08528         150 DDKVTITDFGLAKQKQPES-------------------------------------------------------------  168 (269)
T ss_pred             CCcEEEecccceeeccccc-------------------------------------------------------------
Confidence            9999999999886533100                                                             


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~e  524 (1092)
                                                                 ......|+..|+|||.+.+..++.++|+|||||++||
T Consensus       169 -------------------------------------------~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~  205 (269)
T cd08528         169 -------------------------------------------KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQ  205 (269)
T ss_pred             -------------------------------------------ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHH
Confidence                                                       0113456778999999999889999999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          525 LFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |+++   |..................|......++.+.+|+.+||..||++||++.|+..+
T Consensus       206 l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~  266 (269)
T cd08528         206 MCTLQPPFYSTNMLSLATKIVEAVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAM  266 (269)
T ss_pred             HHhCCCcccccCHHHHHHHHhhccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHH
Confidence            9986   322222222222222222222222457889999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.91  E-value=2.7e-24  Score=232.64  Aligned_cols=239  Identities=20%  Similarity=0.234  Sum_probs=174.9

Q ss_pred             ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcccc
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWI  301 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (1092)
                      |.|.||+|...+    .+..++.|++.............++...+...+|++++.+......+...              
T Consensus         1 ~~g~v~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~--------------   62 (244)
T smart00220        1 SFGKVYLARDKK----TGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKL--------------   62 (244)
T ss_pred             CceEEEEEEECC----CCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEE--------------
Confidence            578899998742    24555666654332222123344455566677999988765554332211              


Q ss_pred             CCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccc
Q 001366          302 GGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLE  381 (1092)
Q Consensus       302 ~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~  381 (1092)
                        ..+++|+.+++|.+++..... ++...+..++.|++.++.|||+.||+|+||+|+||+++.++.++++|||.+.....
T Consensus        63 --~l~~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~  139 (244)
T smart00220       63 --YLVMEYCDGGDLFDLLKKRGR-LSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDP  139 (244)
T ss_pred             --EEEEeCCCCCCHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecc
Confidence              237999999999999976544 77779999999999999999999999999999999999999999999998876441


Q ss_pred             cccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccc
Q 001366          382 SASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEH  461 (1092)
Q Consensus       382 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  461 (1092)
                      ..                                                                              
T Consensus       140 ~~------------------------------------------------------------------------------  141 (244)
T smart00220      140 GG------------------------------------------------------------------------------  141 (244)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             cccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHHH
Q 001366          462 HTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAA  538 (1092)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~  538 (1092)
                                                ......++..|+|||.+.+..++.++||||||+++|+|+++   |.........
T Consensus       142 --------------------------~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~  195 (244)
T smart00220      142 --------------------------LLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLEL  195 (244)
T ss_pred             --------------------------ccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH
Confidence                                      01134567789999999888899999999999999999986   3332233333


Q ss_pred             HHhccccCCCCCCCC--CChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          539 MSDLRDRILPPSFLS--ENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       539 ~~~~~~~~~p~~~~~--~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ...+.....+.....  ...++.+|+.+||..+|.+||++.++++||||
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~~~~~  244 (244)
T smart00220      196 FKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF  244 (244)
T ss_pred             HHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHHhhCCCC
Confidence            333333333222211  56789999999999999999999999999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-24  Score=235.38  Aligned_cols=178  Identities=18%  Similarity=0.207  Sum_probs=148.9

Q ss_pred             cccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccccccc
Q 001366          305 RQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESAS  384 (1092)
Q Consensus       305 ~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~  384 (1092)
                      .+|||+.||+|.-.|+.-|. +.+..+..++..|+-||-|||++|||.||||.+||+|+..|+|||+|||++++-.-   
T Consensus       427 FVMEyvnGGDLMyhiQQ~Gk-FKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~---  502 (683)
T KOG0696|consen  427 FVMEYVNGGDLMYHIQQVGK-FKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIF---  502 (683)
T ss_pred             eEEEEecCchhhhHHHHhcc-cCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeeccccccccc---
Confidence            38999999999999988775 44458999999999999999999999999999999999999999999999876220   


Q ss_pred             CCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccccccc
Q 001366          385 LDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTN  464 (1092)
Q Consensus       385 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  464 (1092)
                                                                                       +              
T Consensus       503 -----------------------------------------------------------------~--------------  503 (683)
T KOG0696|consen  503 -----------------------------------------------------------------D--------------  503 (683)
T ss_pred             -----------------------------------------------------------------C--------------
Confidence                                                                             0              


Q ss_pred             CCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHHHHHh
Q 001366          465 AGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSD  541 (1092)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~  541 (1092)
                                           .....+.+|||-|+|||++.-.+|+.++|.||+||+|||||.|   |+++.+......+
T Consensus       504 ---------------------~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI  562 (683)
T KOG0696|consen  504 ---------------------GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAI  562 (683)
T ss_pred             ---------------------CcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence                                 0001268999999999999999999999999999999999974   8877665555555


Q ss_pred             ccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH-----HHHhhhhhhhhh
Q 001366          542 LRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT-----REILQSEVTNEF  588 (1092)
Q Consensus       542 ~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa-----~eiL~~~~~~~~  588 (1092)
                      ..+....|..  .+.+...+|..+|.+.|.+|...     ++|-.||||...
T Consensus       563 ~ehnvsyPKs--lSkEAv~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~i  612 (683)
T KOG0696|consen  563 MEHNVSYPKS--LSKEAVAICKGLLTKHPGKRLGCGPEGERDIREHPFFRRI  612 (683)
T ss_pred             HHccCcCccc--ccHHHHHHHHHHhhcCCccccCCCCccccchhhCcchhhc
Confidence            5555544443  37888899999999999999765     789999999764

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=6.9e-25  Score=243.70  Aligned_cols=210  Identities=15%  Similarity=0.144  Sum_probs=164.1

Q ss_pred             HhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHH
Q 001366          257 ALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFR  336 (1092)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~  336 (1092)
                      .--+.+...+.....|-|+.++.-.-.+...|+                +||-|.||.|...|+.+|. ++...++.|+.
T Consensus       465 eHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYm----------------LmEaClGGElWTiLrdRg~-Fdd~tarF~~a  527 (732)
T KOG0614|consen  465 EHVFSERNIMMECRSDFIVRLYRTFRDSKYVYM----------------LMEACLGGELWTILRDRGS-FDDYTARFYVA  527 (732)
T ss_pred             HHHHhHHHHHHhcCchHHHHHHHHhccchhhhh----------------hHHhhcCchhhhhhhhcCC-cccchhhhhHH
Confidence            334455556667778888876544333333332                8999999999999998886 55559999999


Q ss_pred             HHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcc
Q 001366          337 QIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQK  416 (1092)
Q Consensus       337 qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  416 (1092)
                      -+++|++|||++|||.|||||+|++|+..|-+|+.|||.|+.+....                                 
T Consensus       528 cv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~---------------------------------  574 (732)
T KOG0614|consen  528 CVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGR---------------------------------  574 (732)
T ss_pred             HHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhccCC---------------------------------
Confidence            99999999999999999999999999999999999999999876100                                 


Q ss_pred             cccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccc
Q 001366          417 FNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEK  496 (1092)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  496 (1092)
                                                                                             ..-++||||
T Consensus       575 -----------------------------------------------------------------------KTwTFcGTp  583 (732)
T KOG0614|consen  575 -----------------------------------------------------------------------KTWTFCGTP  583 (732)
T ss_pred             -----------------------------------------------------------------------ceeeecCCc
Confidence                                                                                   011789999


Q ss_pred             cccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCC-CChhHHHHHHhccccCCCC
Q 001366          497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRILPPSFLS-ENPKEAGFCLWQLHPEPLS  572 (1092)
Q Consensus       497 ~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~li~~lL~~dP~~  572 (1092)
                      .|.|||++.+...+.++|+||||+++||||+|   |.+.+.......+++.-. --.|+. ......+|++++...+|..
T Consensus       584 EYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid-~i~~Pr~I~k~a~~Lik~LCr~~P~E  662 (732)
T KOG0614|consen  584 EYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGID-KIEFPRRITKTATDLIKKLCRDNPTE  662 (732)
T ss_pred             ccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhh-hhhcccccchhHHHHHHHHHhcCcHh
Confidence            99999999999999999999999999999985   665555544444444321 112222 2445669999999999999


Q ss_pred             CCC-----HHHHhhhhhhhhh
Q 001366          573 RPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       573 Rps-----a~eiL~~~~~~~~  588 (1092)
                      |..     ..||-+|-||...
T Consensus       663 RLG~~~~gI~DIkkH~Wf~gf  683 (732)
T KOG0614|consen  663 RLGYQKGGINDIKKHRWFEGF  683 (732)
T ss_pred             hhccccCChHHHHhhhhhhcC
Confidence            986     6999999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-21  Score=195.99  Aligned_cols=285  Identities=20%  Similarity=0.193  Sum_probs=222.0

Q ss_pred             ccCCCCcEEe--EcCCeEEEEEcccceEEe----------eEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 001366          741 IQNPTDRLGA--FFDGLCKYARYSKFEVQG----------MLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEF  808 (1092)
Q Consensus       741 ~~~~~~~l~~--~~D~~~k~w~~~~~~~~~----------~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~  808 (1092)
                      .++|.+.|-+  +...+.++..|....-.+          ......-.+|...|.|.+|+|+|+++|+|+.|++|++..+
T Consensus        39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~f  118 (350)
T KOG0641|consen   39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPF  118 (350)
T ss_pred             EecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEec
Confidence            3577776633  445566776664321110          1222234589999999999999999999999999999988


Q ss_pred             CCCCCCCcccccceeeecCCCCeEEEEEecC---CCCEEEEEE-CCCcEEEEECCCCceEEEeeccCccEEEEEEecCCC
Q 001366          809 NALFNDSVDVYYPAVEMSNRSKLSCVCWNNY---IKNYLASAD-YDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP  884 (1092)
Q Consensus       809 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~~~LaSgs-~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~  884 (1092)
                      +....+.+  .......-|.+.|..++|..+   .+.+|++++ .|..|++-|..+|+.+..+.+|++.|.++--  .++
T Consensus       119 n~dt~~~~--g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys--wn~  194 (350)
T KOG0641|consen  119 NADTCNAT--GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS--WNG  194 (350)
T ss_pred             cccccccc--CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE--ecC
Confidence            75222111  111223458999999999654   356777765 4678888899999999999999999976532  267


Q ss_pred             CEEEEEeCCCcEEEEecCCCceeeeEec--------CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCC
Q 001366          885 TKLASGSDDCSVKLWNINEKNSLATIKN--------IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGH  956 (1092)
Q Consensus       885 ~~laSgs~Dg~I~iWDl~~~~~l~~l~~--------~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H  956 (1092)
                      -++++||.|.+|++||++-..++.++..        .+.|.+++..|.|. +|++|..|....+||+|.++ ++..+..|
T Consensus       195 ~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lydirg~r-~iq~f~ph  272 (350)
T KOG0641|consen  195 AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDIRGGR-MIQRFHPH  272 (350)
T ss_pred             cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEEeeCCc-eeeeeCCC
Confidence            8999999999999999999999988862        25699999999995 99999999999999999875 57788899


Q ss_pred             CCCeEEEEEcCCC-EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeC
Q 001366          957 EKAVSYVKFLDSG-TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus       957 ~~~V~~v~fs~~~-~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                      ...|.||.|+|+. +++++|.|..|++-|+...-.    ....+..+..|...+..+.|+|+.--+++.|.|.++.+|-+
T Consensus       273 sadir~vrfsp~a~yllt~syd~~ikltdlqgdla----~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  273 SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA----HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             ccceeEEEeCCCceEEEEecccceEEEeecccchh----hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            9999999999665 689999999999999973211    12334566679999999999999988999999999999954

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.91  E-value=2e-22  Score=207.90  Aligned_cols=238  Identities=18%  Similarity=0.288  Sum_probs=208.8

Q ss_pred             ceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEe
Q 001366          821 PAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN  900 (1092)
Q Consensus       821 ~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWD  900 (1092)
                      |...++|..+++.|.++.+ +++|.||+.|.++.+|-...|+.+.++.+|++.|||++..- +...+++|+.|.++++||
T Consensus         3 pi~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEE
Confidence            4567789999999999998 99999999999999999889999999999999999999998 889999999999999999


Q ss_pred             cCCCceeeeEecCCceEEEEEccCCCeEEEEEE-----CCCeEEEEEcCCC------CcceEEecCCCCCeEEEEEc-CC
Q 001366          901 INEKNSLATIKNIANVCCVQFSAHSSHLLAFGS-----ADYRTYCYDLRNA------RAPWCVLAGHEKAVSYVKFL-DS  968 (1092)
Q Consensus       901 l~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs-----~Dg~I~vwDlr~~------~~~~~~l~~H~~~V~~v~fs-~~  968 (1092)
                      +.+|+++.+++.+..|..+.|+++|. +++...     ..+.|.++|++..      +.|+..+..+.+.++.+-|. -+
T Consensus        81 v~tGk~la~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~  159 (327)
T KOG0643|consen   81 VETGKQLATWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG  159 (327)
T ss_pred             cCCCcEEEEeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence            99999999999999999999999996 444443     3478999999943      34567777788999999998 67


Q ss_pred             CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccc
Q 001366          969 GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGS 1048 (1092)
Q Consensus       969 ~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~ 1048 (1092)
                      ++|++|..||.|..||++++.       ..+.+-..|...|+.+.+++|..++++||.|.+-++||..+-+.+.++..  
T Consensus       160 ~~ii~Ghe~G~is~~da~~g~-------~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t--  230 (327)
T KOG0643|consen  160 ETIIAGHEDGSISIYDARTGK-------ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT--  230 (327)
T ss_pred             CEEEEecCCCcEEEEEcccCc-------eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee--
Confidence            889999999999999999532       34555567999999999999999999999999999999999888888752  


Q ss_pred             cCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecC
Q 001366         1049 IDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSS 1083 (1092)
Q Consensus      1049 ~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~D 1083 (1092)
                                   ..+|++.+++|....++-|+..
T Consensus       231 -------------e~PvN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  231 -------------ERPVNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             -------------cccccceecccccceEEecCCc
Confidence                         4689999999988887776643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=1.2e-22  Score=230.90  Aligned_cols=281  Identities=17%  Similarity=0.275  Sum_probs=225.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCC----------CCEEEEEECCCcE
Q 001366          784 SISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI----------KNYLASADYDGVV  853 (1092)
Q Consensus       784 sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~----------~~~LaSgs~DgtV  853 (1092)
                      .+.|++..+.|.+.=.|..++|||+....    ..........|..-|++|.--|.+          ...++|||.|+||
T Consensus       329 A~~Fdet~~klscVYndhSlYvWDvrD~~----kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI  404 (1080)
T KOG1408|consen  329 ACQFDETTDKLSCVYNDHSLYVWDVRDVN----KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI  404 (1080)
T ss_pred             EEEecCCCceEEEEEcCceEEEEeccccc----cccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence            46799988899988899999999987521    111223345577777777655521          4579999999999


Q ss_pred             EEEECCCCc---eE----------E------------------------EeeccCccEEEEEEecCCCCEEEEEeCCCcE
Q 001366          854 KLWDACTGQ---TV----------S------------------------HYIEHEKRAWSVDFSQVHPTKLASGSDDCSV  896 (1092)
Q Consensus       854 ~IWD~~tg~---~i----------~------------------------~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I  896 (1092)
                      |+||+..+.   ..          +                        ..-.....+.+++.+| ++.+||+|..-|++
T Consensus       405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~Gnl  483 (1080)
T KOG1408|consen  405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNL  483 (1080)
T ss_pred             EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCce
Confidence            999986521   10          0                        0001233579999999 99999999999999


Q ss_pred             EEEecCCCceeeeEe-cCCceEEEEEccC--CCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CC----
Q 001366          897 KLWNINEKNSLATIK-NIANVCCVQFSAH--SSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DS----  968 (1092)
Q Consensus       897 ~iWDl~~~~~l~~l~-~~~~V~sl~fsp~--~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~----  968 (1092)
                      +|||+..-+....+. |.+.|.|+.|+..  +..+||+++.|..|+|||+...-.++.++.+|...|++|+|. ++    
T Consensus       484 rVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~  563 (1080)
T KOG1408|consen  484 RVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK  563 (1080)
T ss_pred             EEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE
Confidence            999999887777776 7889999999853  345899999999999999987666778889999999999985 22    


Q ss_pred             ---------------------------------------------CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc
Q 001366          969 ---------------------------------------------GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS 1003 (1092)
Q Consensus       969 ---------------------------------------------~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~ 1003 (1092)
                                                                   +++++++.|..|+|||+.        .++..+.|+
T Consensus       564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~--------sgKq~k~FK  635 (1080)
T KOG1408|consen  564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE--------SGKQVKSFK  635 (1080)
T ss_pred             EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc--------ccceeeeec
Confidence                                                         357788888888888888        455667776


Q ss_pred             C---CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEE
Q 001366         1004 G---HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAA 1080 (1092)
Q Consensus      1004 ~---h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasg 1080 (1092)
                      +   |.+...-+.+.|.|-||||...|.++.+||..+++++...              .+|...|+.+.|.+|.+.|++.
T Consensus       636 gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m--------------~GHsE~VTG~kF~nDCkHlISv  701 (1080)
T KOG1408|consen  636 GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM--------------TGHSEAVTGVKFLNDCKHLISV  701 (1080)
T ss_pred             ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh--------------cCcchheeeeeecccchhheee
Confidence            5   6666777889999999999999999999999999887643              5889999999999999999999


Q ss_pred             ecCCeEEEEEc
Q 001366         1081 NSSGCIKVLQM 1091 (1092)
Q Consensus      1081 s~DG~V~vW~l 1091 (1092)
                      +.||+|.||++
T Consensus       702 sgDgCIFvW~l  712 (1080)
T KOG1408|consen  702 SGDGCIFVWKL  712 (1080)
T ss_pred             cCCceEEEEEC
Confidence            99999999986

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=1.2e-22  Score=243.79  Aligned_cols=274  Identities=17%  Similarity=0.151  Sum_probs=215.2

Q ss_pred             cCCeEEEEEcccceEE----ee-EE--eeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC-----------C
Q 001366          752 FDGLCKYARYSKFEVQ----GM-LR--TGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALF-----------N  813 (1092)
Q Consensus       752 ~D~~~k~w~~~~~~~~----~~-l~--~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~-----------~  813 (1092)
                      .|+.+.+|.....-..    .. +.  ......|...|+|+.|+|||+|||+||+|+.|.||+.....           .
T Consensus        35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~  114 (942)
T KOG0973|consen   35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK  114 (942)
T ss_pred             ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence            6777889986432211    11 11  12345799999999999999999999999999999987310           0


Q ss_pred             CCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCC
Q 001366          814 DSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDD  893 (1092)
Q Consensus       814 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~D  893 (1092)
                      ............+|.+.|..++|+|+ +.+||++|.|++|.||+..+...+..+.+|...|-.+.|.| -|++|||-++|
T Consensus       115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdD  192 (942)
T KOG0973|consen  115 NVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDD  192 (942)
T ss_pred             ccceeeEEEEEecCCCccceeccCCC-ccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCC
Confidence            11122234456789999999999997 99999999999999999999999999999999999999999 89999999999


Q ss_pred             CcEEEEecCCCceeeeEec-------CCceEEEEEccCCCeEEEEEEC----CCeEEEEEcCCCCcceEEecCCCCCeEE
Q 001366          894 CSVKLWNINEKNSLATIKN-------IANVCCVQFSAHSSHLLAFGSA----DYRTYCYDLRNARAPWCVLAGHEKAVSY  962 (1092)
Q Consensus       894 g~I~iWDl~~~~~l~~l~~-------~~~V~sl~fsp~~~~~latgs~----Dg~I~vwDlr~~~~~~~~l~~H~~~V~~  962 (1092)
                      ++|+||++.+-...+++..       ...+..+.|+|||. +|++...    -.++.|.+-.+.+ .-..+-||.+++.+
T Consensus       193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las~nA~n~~~~~~~IieR~tWk-~~~~LvGH~~p~ev  270 (942)
T KOG0973|consen  193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLASPNAVNGGKSTIAIIERGTWK-VDKDLVGHSAPVEV  270 (942)
T ss_pred             ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC-eecchhhccCCcceeEEEecCCce-eeeeeecCCCceEE
Confidence            9999999887666666652       23588999999995 7766543    4467887765544 34567899999999


Q ss_pred             EEEc------CCC------------EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc-CCCCCeEEEEEecCCCEEEE
Q 001366          963 VKFL------DSG------------TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS-GHTNEKNFVGLSTADGYIAC 1023 (1092)
Q Consensus       963 v~fs------~~~------------~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~las 1023 (1092)
                      ++|+      +.+            .+++||.|++|-||.....        .++.... -....|..++|+|||-.|.+
T Consensus       271 vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~--------RPl~vi~~lf~~SI~DmsWspdG~~Lfa  342 (942)
T KOG0973|consen  271 VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP--------RPLFVIHNLFNKSIVDMSWSPDGFSLFA  342 (942)
T ss_pred             EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC--------CchhhhhhhhcCceeeeeEcCCCCeEEE
Confidence            9996      222            5789999999999998732        3333332 24567999999999999999


Q ss_pred             EecCCcEEEEeCCC
Q 001366         1024 GSESNEVYAYHRSL 1037 (1092)
Q Consensus      1024 gs~Dg~I~Iwd~~~ 1037 (1092)
                      +|.||+|.++++..
T Consensus       343 cS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  343 CSLDGTVALIHFEE  356 (942)
T ss_pred             EecCCeEEEEEcch
Confidence            99999999998764

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.90  E-value=1e-24  Score=242.45  Aligned_cols=243  Identities=17%  Similarity=0.204  Sum_probs=178.6

Q ss_pred             cceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcccc
Q 001366          223 KGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWI  301 (1092)
Q Consensus       223 ~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (1092)
                      +|+||-|.-.    -.++.+|+|+.--..-.. +....-.++++|....||-|+.+.-.        .+...++      
T Consensus       577 FG~VYgg~hR----ktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M--------~ET~erv------  638 (888)
T KOG4236|consen  577 FGTVYGGKHR----KTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECM--------FETPERV------  638 (888)
T ss_pred             ceeeecceec----ccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEe--------ecCCceE------
Confidence            7999999862    346777776542221111 22334456677888899988853211        1111111      


Q ss_pred             CCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC---CcEEEeccccccc
Q 001366          302 GGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS---NQVKYIGPIIQKE  378 (1092)
Q Consensus       302 ~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~---~~vkl~Dfg~~~~  378 (1092)
                        .++||-+.|-=|.-.|......+++.....++.|||.||.|||-++|+|+||||+||||...   -++|++|||.||.
T Consensus       639 --FVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARi  716 (888)
T KOG4236|consen  639 --FVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARI  716 (888)
T ss_pred             --EEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceee
Confidence              24677776655554454444456676888999999999999999999999999999999743   5799999999999


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +++..           +|                                                              
T Consensus       717 IgEks-----------FR--------------------------------------------------------------  723 (888)
T KOG4236|consen  717 IGEKS-----------FR--------------------------------------------------------------  723 (888)
T ss_pred             cchhh-----------hh--------------------------------------------------------------
Confidence            87421           00                                                              


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                     .+.+|||.|.|||+|+...|..+-|+||+|||+|--|.|   |..+++.
T Consensus       724 -------------------------------rsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdI  772 (888)
T KOG4236|consen  724 -------------------------------RSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDI  772 (888)
T ss_pred             -------------------------------hhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccch
Confidence                                           167999999999999999999999999999999998876   4444444


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ...+++..--..|..+...++...+||..+|+..-.+|.|....|.|||+++.+
T Consensus       773 ndQIQNAaFMyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~lsh~Wlq~yq  826 (888)
T KOG4236|consen  773 NDQIQNAAFMYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSLSHPWLQDYQ  826 (888)
T ss_pred             hHHhhccccccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhccchhhhcch
Confidence            444443333334556778889999999999999999999999999999998753

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.1e-21  Score=205.49  Aligned_cols=300  Identities=17%  Similarity=0.233  Sum_probs=230.8

Q ss_pred             hhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKI  803 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I  803 (1092)
                      ..+.+|.+-+..+.. +...| -.-+++.|.+..+|.+....+..     .+.+|.+.|+||.|++.+.++++++.|++.
T Consensus       142 re~~GHkDGiW~Vaa-~~tqp-i~gtASADhTA~iWs~Esg~CL~-----~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAA-DSTQP-ICGTASADHTARIWSLESGACLA-----TYTGHTGSVNSIKFHNSGLLLLTASGDETA  214 (481)
T ss_pred             hhhcccccceeeehh-hcCCc-ceeecccccceeEEeecccccee-----eecccccceeeEEeccccceEEEccCCcch
Confidence            345666665543322 11111 22367899999999988776654     466999999999999999999999999999


Q ss_pred             EEEEc------CCCC-------C-------------C---Ccc---cccce-eeecCCCCeEEEEEecCCCCEEEEEECC
Q 001366          804 KIFEF------NALF-------N-------------D---SVD---VYYPA-VEMSNRSKLSCVCWNNYIKNYLASADYD  850 (1092)
Q Consensus       804 ~Iwd~------~~~~-------~-------------~---~~~---~~~~~-~~~~h~~~V~~v~~sp~~~~~LaSgs~D  850 (1092)
                      .||..      ....       .             +   ..+   ...|. ...+|.+.|.+..|... ++.++++|+|
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWD  293 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQMVTASWD  293 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-cceeeeeecc
Confidence            99972      1100       0             0   011   12222 24578999999999886 8899999999


Q ss_pred             CcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC-ceeeeEe-cCCceEEEEEccCCCeE
Q 001366          851 GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK-NSLATIK-NIANVCCVQFSAHSSHL  928 (1092)
Q Consensus       851 gtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~-~~l~~l~-~~~~V~sl~fsp~~~~~  928 (1092)
                      .+..+||+++|..+..+.||....+-++-+| ...++++.|.|.+.++||++.. ..+..|+ |...|+++.|.-+.  .
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~  370 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--R  370 (481)
T ss_pred             ccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC--c
Confidence            9999999999999999999999999999999 7889999999999999999843 3455666 67889999999887  5


Q ss_pred             EEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCC-EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCC
Q 001366          929 LAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSG-TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTN 1007 (1092)
Q Consensus       929 latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~-~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~ 1007 (1092)
                      +++|+.|.+|++||+++...++.++.- .+++..++.+.+. .|+.--....|++||+.....    ...+...-.+|..
T Consensus       371 vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl----aRlPrtsRqgHrR  445 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL----ARLPRTSRQGHRR  445 (481)
T ss_pred             eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCcc----ccCCcccccccce
Confidence            999999999999999999888888764 5678899998666 555555667899999984321    1122234568999


Q ss_pred             CeEEEEEecCC--CEEEEEecCCcEEEEeCCCCC
Q 001366         1008 EKNFVGLSTAD--GYIACGSESNEVYAYHRSLPM 1039 (1092)
Q Consensus      1008 ~V~~v~~spdg--~~lasgs~Dg~I~Iwd~~~~~ 1039 (1092)
                      -|.|++|..+.  .-|.+++.|..+.-|.++.+.
T Consensus       446 MV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  446 MVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eeeeeeccccCcccccccccccceeeeeEecccC
Confidence            99999998653  357788899999999887653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=5.5e-23  Score=209.65  Aligned_cols=252  Identities=19%  Similarity=0.247  Sum_probs=200.1

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEE-ecCCCCEEEEEECCCcEE
Q 001366          776 NNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCW-NNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       776 ~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-sp~~~~~LaSgs~DgtV~  854 (1092)
                      ..|.+.|..+..+--|+.|||++.|++|+||.+...    ........+.+|.++|..++| +|.-+.+||||++||.|.
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n----~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNN----GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCC----CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            368888988888889999999999999999998752    122344567799999999999 455599999999999999


Q ss_pred             EEECCCCc--eEEEeeccCccEEEEEEecCC-CCEEEEEeCCCcEEEEecCCC-c-eeeeE--ecCCceEEEEEccC---
Q 001366          855 LWDACTGQ--TVSHYIEHEKRAWSVDFSQVH-PTKLASGSDDCSVKLWNINEK-N-SLATI--KNIANVCCVQFSAH---  924 (1092)
Q Consensus       855 IWD~~tg~--~i~~l~~h~~~V~sv~fsp~~-~~~laSgs~Dg~I~iWDl~~~-~-~l~~l--~~~~~V~sl~fsp~---  924 (1092)
                      ||.-..|+  ....+..|...|++|+|.|.. +-.|+++|.||.|.|.+.+.. . ....+  .|.-.|++++|.|.   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            99988775  344567899999999999943 456899999999999998765 1 22222  26778999999996   


Q ss_pred             C----------CeEEEEEECCCeEEEEEcCCCCc-ceEEecCCCCCeEEEEEcCC-----CEEEEEECCCeEEEEEcCCC
Q 001366          925 S----------SHLLAFGSADYRTYCYDLRNARA-PWCVLAGHEKAVSYVKFLDS-----GTLVTASTDNKLKLWDLKRT  988 (1092)
Q Consensus       925 ~----------~~~latgs~Dg~I~vwDlr~~~~-~~~~l~~H~~~V~~v~fs~~-----~~L~Sgs~Dg~I~vWDl~~~  988 (1092)
                      |          ...|++|+.|+.|+||+..+..- .-.++.+|...|+.++|.|.     .+|+|+|.||++.||-.+..
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e  243 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE  243 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence            3          13599999999999999987532 23458999999999999733     47999999999999998722


Q ss_pred             CCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCC
Q 001366          989 SHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       989 ~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                        ...-..   ..++.....++.++||+.|.+|+.++.|+.|.+|--+
T Consensus       244 --~e~wk~---tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  244 --YEPWKK---TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             --cCcccc---cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence              111122   2333456689999999999999999999999999643

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=5.4e-24  Score=215.97  Aligned_cols=209  Identities=13%  Similarity=0.183  Sum_probs=155.9

Q ss_pred             hhhhhhhccCC-CCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHH
Q 001366          260 AAGAMMVASNA-SPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQI  338 (1092)
Q Consensus       260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qi  338 (1092)
                      .++.+.+.-.. +|||+++++...-.       ....|+.       ..||.+..+.+.+-.    .++..+++.++.||
T Consensus        80 kREikIL~nL~gg~NIi~L~DiV~Dp-------~SktpaL-------iFE~v~n~Dfk~ly~----tl~d~dIryY~~el  141 (338)
T KOG0668|consen   80 KREIKILQNLRGGPNIIKLLDIVKDP-------ESKTPSL-------IFEYVNNTDFKQLYP----TLTDYDIRYYIYEL  141 (338)
T ss_pred             HHHHHHHHhccCCCCeeehhhhhcCc-------cccCchh-------HhhhhccccHHHHhh----hhchhhHHHHHHHH
Confidence            34555566665 99999877765421       2334444       689999999887653    45666899999999


Q ss_pred             HHHHHHhhhcCccccCCCCCCeEEccC-CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhccc
Q 001366          339 VALVDYHHTQGVTFLDLKPSSFKLLQS-NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKF  417 (1092)
Q Consensus       339 l~~l~~lHs~gIvHrDLKP~Nill~~~-~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  417 (1092)
                      +.||+|||++||+|||+||.|++|+.. -.+++||.|+|.....                                    
T Consensus       142 LkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp------------------------------------  185 (338)
T KOG0668|consen  142 LKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHP------------------------------------  185 (338)
T ss_pred             HHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCC------------------------------------
Confidence            999999999999999999999999965 4599999999977541                                    


Q ss_pred             ccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCccccccccccccccccccccc
Q 001366          418 NHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKW  497 (1092)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  497 (1092)
                                                                                          ....+..+-++.
T Consensus       186 --------------------------------------------------------------------~~eYnVRVASRy  197 (338)
T KOG0668|consen  186 --------------------------------------------------------------------GKEYNVRVASRY  197 (338)
T ss_pred             --------------------------------------------------------------------Cceeeeeeehhh
Confidence                                                                                112235667888


Q ss_pred             ccCcccccC-CCCCccccchhhhHHHHHHcC---C-CCcHHHHHHHHHhccc--------------cCCCCC--------
Q 001366          498 YASPEELSG-GVCTTSSNIYSLGVLFFELFG---R-FDSERALAAAMSDLRD--------------RILPPS--------  550 (1092)
Q Consensus       498 Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~---~-f~~~~~~~~~~~~~~~--------------~~~p~~--------  550 (1092)
                      |.-||++.+ ..|+.+-|+|||||+|..|+.   | |.+.....++.+..+.              -.++|.        
T Consensus       198 fKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~  277 (338)
T KOG0668|consen  198 FKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRH  277 (338)
T ss_pred             cCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhcc
Confidence            999999988 568999999999999999986   3 4444333333221110              112222        


Q ss_pred             -------------CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          551 -------------FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       551 -------------~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                                   -.-.+|+..+|+.++|.+|-.+|+||.|++.||||....+
T Consensus       278 ~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~HpyF~~~~~  330 (338)
T KOG0668|consen  278 SRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHPYFAPVRE  330 (338)
T ss_pred             ccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcCchHHHHHH
Confidence                         1223588999999999999999999999999999976543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=2.9e-21  Score=224.81  Aligned_cols=315  Identities=16%  Similarity=0.166  Sum_probs=238.5

Q ss_pred             CCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceee
Q 001366          745 TDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVE  824 (1092)
Q Consensus       745 ~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~  824 (1092)
                      +..+.++.+|.+++|.+...++.-     .+.++.+.|+++.=+|-=+.+|.|..+|+|.|+++...        .....
T Consensus       173 NKIvvGs~~G~lql~Nvrt~K~v~-----~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--------kil~s  239 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTGKVVY-----TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--------KILMS  239 (910)
T ss_pred             eeEEEeecCCcEEEEEeccCcEEE-----EecccccceeEeccCCcceEEEEeccCceEEEEEcccC--------cEEEE
Confidence            456677899999999988766554     45578899999999998899999999999999998751        22334


Q ss_pred             ecCC-CCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEee-ccCccEEEEEEecCCCCEEEEEeCCCcEEE----
Q 001366          825 MSNR-SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYI-EHEKRAWSVDFSQVHPTKLASGSDDCSVKL----  898 (1092)
Q Consensus       825 ~~h~-~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~-~h~~~V~sv~fsp~~~~~laSgs~Dg~I~i----  898 (1092)
                      +.|. ++|+.++|..|+...+|+|+..|.+.+||++..+.+..+. .|.+.|....|.| ....+++++.|+.+++    
T Consensus       240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD  318 (910)
T KOG1539|consen  240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFD  318 (910)
T ss_pred             EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEee
Confidence            4454 9999999999978889999999999999998765444333 4444444444444 3334444444444444    


Q ss_pred             -------------------------------------------EecCC--------------------------------
Q 001366          899 -------------------------------------------WNINE--------------------------------  903 (1092)
Q Consensus       899 -------------------------------------------WDl~~--------------------------------  903 (1092)
                                                                 +++..                                
T Consensus       319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i  398 (910)
T KOG1539|consen  319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI  398 (910)
T ss_pred             CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence                                                       33211                                


Q ss_pred             ---------------------------------Cce-eeeEecC------CceEEEEEccCCCeEEEEEECCCeEEEEEc
Q 001366          904 ---------------------------------KNS-LATIKNI------ANVCCVQFSAHSSHLLAFGSADYRTYCYDL  943 (1092)
Q Consensus       904 ---------------------------------~~~-l~~l~~~------~~V~sl~fsp~~~~~latgs~Dg~I~vwDl  943 (1092)
                                                       ... .+++.+.      ..+++++.++.|+ +.+.|+..|.|-+|++
T Consensus       399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNm  477 (910)
T KOG1539|consen  399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNM  477 (910)
T ss_pred             eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEc
Confidence                                             000 0111111      3577888999884 8888999999999999


Q ss_pred             CCCCcceEEe---cCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCC---------------------------
Q 001366          944 RNARAPWCVL---AGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTG---------------------------  992 (1092)
Q Consensus       944 r~~~~~~~~l---~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~---------------------------  992 (1092)
                      .++-. ...+   ..|..+|+.++.. -+..++|++.+|.+++||..+.....                           
T Consensus       478 QSGi~-r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf  556 (910)
T KOG1539|consen  478 QSGIH-RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF  556 (910)
T ss_pred             ccCee-ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence            98743 3344   5899999999987 66789999999999999998543100                           


Q ss_pred             ------CCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEE
Q 001366          993 ------PSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVS 1066 (1092)
Q Consensus       993 ------~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~ 1066 (1092)
                            ..+...++.+.||.+.|+.++|||||++|++++.|++|++||+.++..|-.+.+               ..++.
T Consensus       557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---------------d~~~~  621 (910)
T KOG1539|consen  557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---------------DSPCT  621 (910)
T ss_pred             eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---------------CCcce
Confidence                  012345677889999999999999999999999999999999999998887764               46789


Q ss_pred             EEEEeCCCCEEEEEecC-CeEEEEE
Q 001366         1067 SVCWRRRSDMVVAANSS-GCIKVLQ 1090 (1092)
Q Consensus      1067 sva~spd~~~Lasgs~D-G~V~vW~ 1090 (1092)
                      ++.|+|+|.+|||+..| .-|++|-
T Consensus       622 sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  622 SLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eeEECCCCCEEEEEEecCceEEEEE
Confidence            99999999999999999 5688884

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=1.2e-22  Score=212.62  Aligned_cols=279  Identities=15%  Similarity=0.228  Sum_probs=217.9

Q ss_pred             cCCCCcE--EeEcCCeEEEEEcccceEEe----e---------EEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001366          742 QNPTDRL--GAFFDGLCKYARYSKFEVQG----M---------LRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIF  806 (1092)
Q Consensus       742 ~~~~~~l--~~~~D~~~k~w~~~~~~~~~----~---------l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iw  806 (1092)
                      +++++.|  .++.|.++|+.+..+.-...    .         -...+|..|.+.|+++.|+|....|++|+.|++|++|
T Consensus       120 fs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlF  199 (430)
T KOG0640|consen  120 FSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLF  199 (430)
T ss_pred             eCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEE
Confidence            4677766  55788999998875221111    0         0113577899999999999999999999999999999


Q ss_pred             EcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEe---eccCccEEEEEEecCC
Q 001366          807 EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHY---IEHEKRAWSVDFSQVH  883 (1092)
Q Consensus       807 d~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l---~~h~~~V~sv~fsp~~  883 (1092)
                      |+....     .......+....+|.++.|+|. |.+|+.|..-.++++||+++-+|...-   .+|++.|++|.+++ .
T Consensus       200 DfsK~s-----aKrA~K~~qd~~~vrsiSfHPs-GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t  272 (430)
T KOG0640|consen  200 DFSKTS-----AKRAFKVFQDTEPVRSISFHPS-GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-T  272 (430)
T ss_pred             ecccHH-----HHHHHHHhhccceeeeEeecCC-CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-C
Confidence            997521     1112223445788999999998 999999999999999999999987654   36999999999999 8


Q ss_pred             CCEEEEEeCCCcEEEEecCCCceeeeEe---cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCC----
Q 001366          884 PTKLASGSDDCSVKLWNINEKNSLATIK---NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGH----  956 (1092)
Q Consensus       884 ~~~laSgs~Dg~I~iWDl~~~~~l~~l~---~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H----  956 (1092)
                      +++.++||.||.|++||--+++|+.++.   ..+.|++..|..++. ++++.+.|..|++|.+.+++.. ..+.|-    
T Consensus       273 ~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~R~l-~~YtGAg~tg  350 (430)
T KOG0640|consen  273 GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK-YILSSGKDSTVKLWEISTGRML-KEYTGAGTTG  350 (430)
T ss_pred             ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe-EEeecCCcceeeeeeecCCceE-EEEecCCccc
Confidence            9999999999999999999999999997   356899999999995 8999999999999999998753 333322    


Q ss_pred             -CCCeEEEEEc-CCCEEEEEE-CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEE
Q 001366          957 -EKAVSYVKFL-DSGTLVTAS-TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAY 1033 (1092)
Q Consensus       957 -~~~V~~v~fs-~~~~L~Sgs-~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iw 1033 (1092)
                       ..--+...|+ ..++++.-. ..+.+.-||.++...       ....-.+|.+.+..+.-||.+.-+++||.|-.+++|
T Consensus       351 rq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr-------~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  351 RQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR-------VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW  423 (430)
T ss_pred             chhhhhhhhhcCccceEEccccccCceeeccccchhh-------hhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence             1112334455 445555443 457799999995431       112234799999999999999999999999999999


Q ss_pred             eCC
Q 001366         1034 HRS 1036 (1092)
Q Consensus      1034 d~~ 1036 (1092)
                      ...
T Consensus       424 yrr  426 (430)
T KOG0640|consen  424 YRR  426 (430)
T ss_pred             eec
Confidence            743

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=7.8e-23  Score=232.14  Aligned_cols=330  Identities=13%  Similarity=0.184  Sum_probs=246.1

Q ss_pred             CcEEeEcCCeEEEEEcccceEEeeEE-eeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceee
Q 001366          746 DRLGAFFDGLCKYARYSKFEVQGMLR-TGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVE  824 (1092)
Q Consensus       746 ~~l~~~~D~~~k~w~~~~~~~~~~l~-~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~  824 (1092)
                      ..+++..||.++.|......-...-. ...+..|.++|+.+....+++.|++++.|-+|++|+.....     ..+....
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~sti  113 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-----TFCMSTI  113 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----chhHhhh
Confidence            35688999999999975433221122 33577899999999999999999999999999999986521     2344556


Q ss_pred             ecCCCCeEEEEE-ecCCCCEEEEEECCCcEEEEECCCCc--eE--------EEee-ccCccEEEEEEecCCCCEEEEEeC
Q 001366          825 MSNRSKLSCVCW-NNYIKNYLASADYDGVVKLWDACTGQ--TV--------SHYI-EHEKRAWSVDFSQVHPTKLASGSD  892 (1092)
Q Consensus       825 ~~h~~~V~~v~~-sp~~~~~LaSgs~DgtV~IWD~~tg~--~i--------~~l~-~h~~~V~sv~fsp~~~~~laSgs~  892 (1092)
                      -.|+..|.|++. .++ ...+||||.|+.|.|||++++.  .+        ..+. ++...|++++.++ .+..+++|+.
T Consensus       114 r~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgt  191 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGT  191 (735)
T ss_pred             hcccchheeeeecccC-ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCc
Confidence            679999999998 554 8899999999999999999872  22        2233 7888999999999 7899999999


Q ss_pred             CCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCE
Q 001366          893 DCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGT  970 (1092)
Q Consensus       893 Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~  970 (1092)
                      .+.+++||.++++.+..+. |..+|.++-.+++|. .+++++.||+|++||++..+ .+.++..|...|+++..+ +-.+
T Consensus       192 ek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQr-Cl~T~~vH~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  192 EKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQQR-CLATYIVHKEGVWALQSSPSFTH  269 (735)
T ss_pred             ccceEEeccccccceeeeeccccceEEEEEcCCCC-eEeecCCCceEEeeeccccc-eeeeEEeccCceEEEeeCCCcce
Confidence            9999999999999888887 678999999999995 89999999999999999766 467889999999999987 5568


Q ss_pred             EEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeee---cc
Q 001366          971 LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYK---FG 1047 (1092)
Q Consensus       971 L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~---~~ 1047 (1092)
                      +++|+.||.|..-|+++..       .+...+ ....+|..+..+.+..-+-+++.|+.|+-|-...--.+....   +-
T Consensus       270 vYsG~rd~~i~~Tdl~n~~-------~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~  341 (735)
T KOG0308|consen  270 VYSGGRDGNIYRTDLRNPA-------KSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFF  341 (735)
T ss_pred             EEecCCCCcEEecccCCch-------hheEee-cCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcc
Confidence            9999999999999999531       222222 234556666666544445677889999999643221111100   00


Q ss_pred             ccCCCCCcc-------ccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEcC
Q 001366         1048 SIDPISGKE-------TDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092 (1092)
Q Consensus      1048 ~~~~i~~~~-------~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~lv 1092 (1092)
                      +.+....-+       .....+..|...+.-.|.+.++|=...|.+.+||++
T Consensus       342 ~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl  393 (735)
T KOG0308|consen  342 STDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDIL  393 (735)
T ss_pred             cccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence            001100000       001112234455556688899999999999999985

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.90  E-value=9.2e-21  Score=206.72  Aligned_cols=270  Identities=18%  Similarity=0.223  Sum_probs=223.3

Q ss_pred             CCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceee
Q 001366          745 TDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVE  824 (1092)
Q Consensus       745 ~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~  824 (1092)
                      +..+.+.-|....+.+........     .|.+|...|+++.|+|+...+++++.|..|+||....       ...+...
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l~-----~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-------~s~~~~~  299 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQILA-----TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-------SSEPTSS  299 (506)
T ss_pred             CcceecCCCCceEEEecchhhhhh-----hccCcceEEEEEEeccchhheeecCCcceEEeecccc-------ccCcccc
Confidence            345566677677777765544433     3669999999999999999999999999999999764       2345566


Q ss_pred             ecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeecc--CccEEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 001366          825 MSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEH--EKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN  902 (1092)
Q Consensus       825 ~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h--~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~  902 (1092)
                      ..|.++|+.+..+|. +.+|+++|.||+..+.|+.+|..+......  .-.+++..|+| ||.+|++|..|+.|+|||+.
T Consensus       300 ~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             ccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcC
Confidence            679999999999998 999999999999999999999887665432  23489999999 99999999999999999999


Q ss_pred             CCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeE
Q 001366          903 EKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKL  980 (1092)
Q Consensus       903 ~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I  980 (1092)
                      ++..+..|. |.++|..++|+-+| ++|++++.|+.|++||+|..+............|.++.|. .+.+|+.++.|=+|
T Consensus       378 s~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V  456 (506)
T KOG0289|consen  378 SQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV  456 (506)
T ss_pred             CccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence            999888887 67899999999998 7999999999999999998765333333344579999998 77889989887677


Q ss_pred             EEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeC
Q 001366          981 KLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus       981 ~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                      .+++-.+.      ...++..+..|.+..+.+.|.....++++||.|..+++|.+
T Consensus       457 y~~~k~~k------~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  457 YICKKKTK------SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEEecccc------cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            77764422      45677888889989999999999999999999999888853

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=3.4e-22  Score=211.46  Aligned_cols=304  Identities=20%  Similarity=0.311  Sum_probs=235.3

Q ss_pred             eecCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCC---CCEEE
Q 001366          774 EFNNSANVICSISFDR-----DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI---KNYLA  845 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fsp-----dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~---~~~La  845 (1092)
                      ....|..+|..++|++     ....+||+|.+ .+.||+......  .........-.+......++|.-+.   .-++|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~--ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la  109 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGG--IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA  109 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccc--eeeeeeccCCCCCcceEEEEEEecCCCCCeeEE
Confidence            3458899999999985     34578887754 799998865220  0111111112367788899997652   44889


Q ss_pred             EEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe----cCCceEEEEE
Q 001366          846 SADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK----NIANVCCVQF  921 (1092)
Q Consensus       846 Sgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~----~~~~V~sl~f  921 (1092)
                      .++.-|.|+|.|+.++++...+.+|...|+.+.|+|.+++++++||.|.+|++|++++..|+..|.    |...|.++.|
T Consensus       110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             eecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999987    5678999999


Q ss_pred             ccCCCeEEEEEECCCeEEEEEcCCCCc--------------------------c-eEEecCCCCCeEEEEEcCCCEEEEE
Q 001366          922 SAHSSHLLAFGSADYRTYCYDLRNARA--------------------------P-WCVLAGHEKAVSYVKFLDSGTLVTA  974 (1092)
Q Consensus       922 sp~~~~~latgs~Dg~I~vwDlr~~~~--------------------------~-~~~l~~H~~~V~~v~fs~~~~L~Sg  974 (1092)
                      +++|. .+++++.|..+++|++...+-                          + ..+..-|+..|-|+.|. +++++|-
T Consensus       190 ~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-gd~ilSk  267 (385)
T KOG1034|consen  190 SLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-GDFILSK  267 (385)
T ss_pred             cCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH-hhheeec
Confidence            99996 999999999999999983210                          0 11334588889999987 6899999


Q ss_pred             ECCCeEEEEEcCCCCC------CCCCCCceeEEEcCCCCCeEEEEEecC--CCEEEEEecCCcEEEEeCCCCCceeeeec
Q 001366          975 STDNKLKLWDLKRTSH------TGPSTNACSLTFSGHTNEKNFVGLSTA--DGYIACGSESNEVYAYHRSLPMPITSYKF 1046 (1092)
Q Consensus       975 s~Dg~I~vWDl~~~~~------~~~~~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~I~Iwd~~~~~~i~~~~~ 1046 (1092)
                      |-++.|..|...+.+.      ........+.++.-....++.+.|+-|  +++||+|...|.|++||+....+..... 
T Consensus       268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt-  346 (385)
T KOG1034|consen  268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT-  346 (385)
T ss_pred             ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce-
Confidence            9999999998843221      111222344566666677888866654  8899999999999999998766531111 


Q ss_pred             cccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEcC
Q 001366         1047 GSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092 (1092)
Q Consensus      1047 ~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~lv 1092 (1092)
                               ......+..|...+|+.|+.+|+..+.||.|.-|+.|
T Consensus       347 ---------l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  347 ---------LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ---------EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence                     0112235679999999999999999999999999864

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.3e-24  Score=224.94  Aligned_cols=251  Identities=17%  Similarity=0.152  Sum_probs=168.6

Q ss_pred             cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +.+|||+--..    +.-+.+++.|-+..-- .-....+-+++.+++..-+|.|..+.++.-..         ..++.+ 
T Consensus        64 GAFGVVWsVTD----PRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQP---------ph~dfF-  129 (449)
T KOG0664|consen   64 GAFGVVWSVTD----PRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQP---------ANPSFF-  129 (449)
T ss_pred             cceeEEEeccC----CCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCC---------CCchHH-
Confidence            56799996544    2224444443321111 11223567888999999999998765554221         111111 


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                       ..- .+..+...-+|...|-+.. .++...+.-+++||++||.|||+.||.||||||.|+|+..+..+||+|||++|.-
T Consensus       130 -qEi-YV~TELmQSDLHKIIVSPQ-~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARve  206 (449)
T KOG0664|consen  130 -QEL-YVLTELMQSDLHKIIVSPQ-ALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTW  206 (449)
T ss_pred             -HHH-HHHHHHHHhhhhheeccCC-CCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEeccccccccc
Confidence             111 1122234456766665554 3556588889999999999999999999999999999999999999999999863


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ..                                                                              
T Consensus       207 e~------------------------------------------------------------------------------  208 (449)
T KOG0664|consen  207 DQ------------------------------------------------------------------------------  208 (449)
T ss_pred             ch------------------------------------------------------------------------------
Confidence            30                                                                              


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                              .....++..+-|.+|+|||++.| ..|+.++||||+|||+.|||.+   |......
T Consensus       209 ------------------------d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~Pi  264 (449)
T KOG0664|consen  209 ------------------------RDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPI  264 (449)
T ss_pred             ------------------------hhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChH
Confidence                                    01223445677899999999999 6699999999999999999974   3322221


Q ss_pred             HHH--------------H---------HhccccCCCCCCC---------CCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          536 AAA--------------M---------SDLRDRILPPSFL---------SENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       536 ~~~--------------~---------~~~~~~~~p~~~~---------~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      .+.              |         ..++....+|.+.         ....+...++..||+++|.+|.+..+.+.|+
T Consensus       265 qQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~  344 (449)
T KOG0664|consen  265 EQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHR  344 (449)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhcccc
Confidence            111              1         1223333344432         1223456888999999999999999999999


Q ss_pred             hhhhhhc
Q 001366          584 VTNEFQE  590 (1092)
Q Consensus       584 ~~~~~~~  590 (1092)
                      +..+.+.
T Consensus       345 ~~~e~R~  351 (449)
T KOG0664|consen  345 YLEEGRL  351 (449)
T ss_pred             cccccce
Confidence            9877654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=2.8e-22  Score=229.35  Aligned_cols=257  Identities=19%  Similarity=0.290  Sum_probs=212.8

Q ss_pred             cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEE-EEEcC-CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceee
Q 001366          747 RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICS-ISFDR-DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVE  824 (1092)
Q Consensus       747 ~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~s-l~fsp-dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~  824 (1092)
                      .++++.|+++++|.-..-   .-+.++.+.+|.+.|.+ +++.+ ++-.+++|+.|.+|.+|....       .......
T Consensus        28 i~s~sRd~t~~vw~~~~~---~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~-------~~P~~~L   97 (745)
T KOG0301|consen   28 IISGSRDGTVKVWAKKGK---QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ-------AEPLYTL   97 (745)
T ss_pred             EeecCCCCceeeeeccCc---ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-------CCchhhh
Confidence            568889999999985332   22344557788888877 88885 445799999999999999875       2233456


Q ss_pred             ecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 001366          825 MSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK  904 (1092)
Q Consensus       825 ~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~  904 (1092)
                      .+|.+.|.|++...+ +. ++|||+|.|+++|-.  +++...+.+|+..||++.+-| .. .++|||.|.+|++|.-  +
T Consensus        98 kgH~snVC~ls~~~~-~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~  169 (745)
T KOG0301|consen   98 KGHKSNVCSLSIGED-GT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--G  169 (745)
T ss_pred             hccccceeeeecCCc-Cc-eEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--C
Confidence            789999999997765 44 999999999999964  677777999999999999998 44 8999999999999986  6


Q ss_pred             ceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEE
Q 001366          905 NSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKL  982 (1092)
Q Consensus       905 ~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~v  982 (1092)
                      +++.+|. |..-|..+++-+++  .|++++.||.|++||+. +. .+..+.+|+..|.+++.. +++.++|++.|++++|
T Consensus       170 ~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~-ge-~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlri  245 (745)
T KOG0301|consen  170 TLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLD-GE-VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRI  245 (745)
T ss_pred             chhhhhccchhheeeeEEecCC--CeEeecCCceEEEEecc-Cc-eeeeeeccceEEEEEEecCCCCeEEEecCCceEEE
Confidence            7888888 66789999999986  48899999999999994 43 466778999999999954 8899999999999999


Q ss_pred             EEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCC
Q 001366          983 WDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       983 WDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                      |+..          .|.+.+.-.+..|+++.+-++|+ |++|+.||.||||...
T Consensus       246 W~~~----------e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  246 WKKD----------ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eecC----------ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            9976          56777776667899999988886 6678889999999755

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=2.4e-22  Score=221.37  Aligned_cols=286  Identities=12%  Similarity=0.186  Sum_probs=234.6

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      ...|...|+.+.++...+++.||| .|.|+|||+.....+....+.  ........|.++...|+ ++.|++|+.-.++.
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqL--dcl~rdnyiRSckL~pd-grtLivGGeastls  490 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQL--DCLNRDNYIRSCKLLPD-GRTLIVGGEASTLS  490 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccc--cccCcccceeeeEecCC-CceEEeccccceee
Confidence            347999999999999999999997 578999999864322211111  12234677889999998 88899999999999


Q ss_pred             EEECCCCce--EEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEE
Q 001366          855 LWDACTGQT--VSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       855 IWD~~tg~~--i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~lat  931 (1092)
                      |||+..-..  -..+....-.+..++.+| |.++.++|..||.|.|||+.....++.|+ |...+.||.++++|. .|.|
T Consensus       491 iWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt-klWT  568 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT-KLWT  568 (705)
T ss_pred             eeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc-eeec
Confidence            999976542  223443345678899999 88999999999999999999999999998 678899999999995 8999


Q ss_pred             EECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeE
Q 001366          932 GSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN 1010 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~ 1010 (1092)
                      |+-|++|+.||+|.++.+..  ....+.|.++.++ .+++|+.|-..+.+-|-...+         ...+.+.-|...|.
T Consensus       569 GGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk---------p~kyqlhlheScVL  637 (705)
T KOG0639|consen  569 GGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK---------PEKYQLHLHESCVL  637 (705)
T ss_pred             CCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcEEEEecCC---------ccceeecccccEEE
Confidence            99999999999998765321  1225678888888 677999999999998888763         33567788999999


Q ss_pred             EEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1011 FVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1011 ~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      ++.|++.|+++++.+.|+.+..|..-.|..|...+-               ...|.++.++-|.++++||+.|....||+
T Consensus       638 SlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---------------~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  638 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------------SSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             EEEecccCceeeecCchhhhhhccCccccceeeccc---------------cCcceeeeeccCceEEEecCCCcceEEEE
Confidence            999999999999999999999998888877765541               46799999999999999999999999998


Q ss_pred             cC
Q 001366         1091 MV 1092 (1092)
Q Consensus      1091 lv 1092 (1092)
                      ++
T Consensus       703 V~  704 (705)
T KOG0639|consen  703 VI  704 (705)
T ss_pred             Ee
Confidence            75

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.89  E-value=2.4e-23  Score=216.03  Aligned_cols=160  Identities=21%  Similarity=0.226  Sum_probs=124.0

Q ss_pred             CCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCch
Q 001366          313 VNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSEN  392 (1092)
Q Consensus       313 gsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d  392 (1092)
                      |||.++|+..+..+++.+++.|++||+.||.|||++|      ||+|||++.++.+|+  ||+++....           
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~~~~~~~--fG~~~~~~~-----------   61 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQA------KSGNILLTWDGLLKL--DGSVAFKTP-----------   61 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcCccceee--ccceEeecc-----------
Confidence            7899999877777899999999999999999999999      999999999999999  998765330           


Q ss_pred             hhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccC
Q 001366          393 YRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSK  472 (1092)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  472 (1092)
                                                                                                      
T Consensus        62 --------------------------------------------------------------------------------   61 (176)
T smart00750       62 --------------------------------------------------------------------------------   61 (176)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHHHHHhccccCCCC
Q 001366          473 SSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRILPP  549 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~~~p~  549 (1092)
                                       ....||+.|||||++.+..++.++|||||||++|||+++   |............+.....+.
T Consensus        62 -----------------~~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~  124 (176)
T smart00750       62 -----------------EQSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPAD  124 (176)
T ss_pred             -----------------ccCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccC
Confidence                             012478899999999999999999999999999999986   332222222222222111111


Q ss_pred             ------CCCCCCh--hHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          550 ------SFLSENP--KEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       550 ------~~~~~~~--~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                            .......  .+.+|+.+||..+|.+||++.++++|+|+...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~  171 (176)
T smart00750      125 DPRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALFA  171 (176)
T ss_pred             CccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Confidence                  1111122  58899999999999999999999999998653

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=1.6e-21  Score=222.92  Aligned_cols=341  Identities=14%  Similarity=0.180  Sum_probs=252.9

Q ss_pred             hhhccchhhhhhccccccCCCCcE--EeEcCCeEEEEEcccce---------------------EEeeEE-----eeeec
Q 001366          725 LLRDRENLFLAQQDQEIQNPTDRL--GAFFDGLCKYARYSKFE---------------------VQGMLR-----TGEFN  776 (1092)
Q Consensus       725 ~l~~~~~~~~~~~~~~~~~~~~~l--~~~~D~~~k~w~~~~~~---------------------~~~~l~-----~~~l~  776 (1092)
                      .+++|.+++-.+.+.... .++.+  +++.|.++++|++.-..                     ....+.     ...+.
T Consensus       186 el~GH~DWIrsl~f~~~~-~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~  264 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLG-GDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM  264 (764)
T ss_pred             EeeccchhhhhhhhhccC-CCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence            378999999887764322 23333  67799999999974332                     010111     02245


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccccccee---ee-cCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAV---EM-SNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~---~~-~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      +|.+.|.++.|+|.+..|++++.|+++.||......    .......   .+ +......+.-|+|+ ++.+++-++-|-
T Consensus       265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~t----GiWv~~vRlGe~gg~a~GF~g~lw~~n-~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENT----GIWVDVVRLGEVGGSAGGFWGGLWSPN-SNVIIAHGRTGG  339 (764)
T ss_pred             CcccceEEEEEccchhhheecccCcceEEEecCCcc----ceEEEEEEeecccccccceeeEEEcCC-CCEEEEecccCc
Confidence            999999999999999999999999999999876421    0111111   12 23456889999998 889999999999


Q ss_pred             EEEEECCC-C--ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCC-CceeeeEe----cCCceEEEEEccC
Q 001366          853 VKLWDACT-G--QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE-KNSLATIK----NIANVCCVQFSAH  924 (1092)
Q Consensus       853 V~IWD~~t-g--~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~-~~~l~~l~----~~~~V~sl~fsp~  924 (1092)
                      .++|.... .  .......||.+.|.+|+|.| .|.+|+|.|.|.+-|+|---. ....+.+.    |...++|++|-+.
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence            99998322 2  23334569999999999999 899999999999999987651 12233332    6678999999885


Q ss_pred             CCeEEEEEECCCeEEEEEcCCC--------------------------------C-----------c-------------
Q 001366          925 SSHLLAFGSADYRTYCYDLRNA--------------------------------R-----------A-------------  948 (1092)
Q Consensus       925 ~~~~latgs~Dg~I~vwDlr~~--------------------------------~-----------~-------------  948 (1092)
                      . ..|++|.....+++|+....                                +           .             
T Consensus       419 ~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p  497 (764)
T KOG1063|consen  419 D-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP  497 (764)
T ss_pred             C-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence            3 47888988999999885210                                0           0             


Q ss_pred             -------------------ceEEecCCCCCeEEEEEc-CCCEEEEEECC-----CeEEEEEcCCCCCCCCCCCceeEEEc
Q 001366          949 -------------------PWCVLAGHEKAVSYVKFL-DSGTLVTASTD-----NKLKLWDLKRTSHTGPSTNACSLTFS 1003 (1092)
Q Consensus       949 -------------------~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~D-----g~I~vWDl~~~~~~~~~~~~~~~~l~ 1003 (1092)
                                         .+..+-||...|++++.+ +++.++|++..     ..|++|+..++        ...+.+.
T Consensus       498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W--------~~~~~L~  569 (764)
T KOG1063|consen  498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW--------LQVQELE  569 (764)
T ss_pred             hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch--------hhhheec
Confidence                               012245788889999998 56678887754     35999999843        4456889


Q ss_pred             CCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecC
Q 001366         1004 GHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSS 1083 (1092)
Q Consensus      1004 ~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~D 1083 (1092)
                      +|.-.|+.++|||||+||++.|.|.++.+|...... ...++|         .....|..-|+++.|+|++.++||||.|
T Consensus       570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~-~~e~~f---------a~~k~HtRIIWdcsW~pde~~FaTaSRD  639 (764)
T KOG1063|consen  570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI-KDEFRF---------ACLKAHTRIIWDCSWSPDEKYFATASRD  639 (764)
T ss_pred             ccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc-chhhhh---------ccccccceEEEEcccCcccceeEEecCC
Confidence            999999999999999999999999999999864322 112222         1246889999999999999999999999


Q ss_pred             CeEEEEEc
Q 001366         1084 GCIKVLQM 1091 (1092)
Q Consensus      1084 G~V~vW~l 1091 (1092)
                      .+|+||.+
T Consensus       640 K~VkVW~~  647 (764)
T KOG1063|consen  640 KKVKVWEE  647 (764)
T ss_pred             ceEEEEec
Confidence            99999975

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=7e-22  Score=207.21  Aligned_cols=251  Identities=21%  Similarity=0.265  Sum_probs=191.4

Q ss_pred             CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC-CceE-EEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 001366          827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT-GQTV-SHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK  904 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t-g~~i-~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~  904 (1092)
                      ....|.+++|+|....+++++|+||+||+|++.. |..+ +....|.++|.+++|+. ++..+++|+.|+.+++||+.++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCC
Confidence            4678999999997688888999999999999976 4433 33457999999999998 8999999999999999999999


Q ss_pred             ceeeeEecCCceEEEEEccCCC-eEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEE
Q 001366          905 NSLATIKNIANVCCVQFSAHSS-HLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLW  983 (1092)
Q Consensus       905 ~~l~~l~~~~~V~sl~fsp~~~-~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vW  983 (1092)
                      +....-.|.++|.++.|-+... ..|+||+.|++|+.||+|... ++.++.- ...|.++..- ...++.+..+..|.+|
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~L-PeRvYa~Dv~-~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQL-PERVYAADVL-YPMAVVATAERHIAVY  181 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC-eeeeeec-cceeeehhcc-CceeEEEecCCcEEEE
Confidence            7776667999999999987542 378999999999999999765 4454432 3345655442 3467788889999999


Q ss_pred             EcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCC
Q 001366          984 DLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGL 1063 (1092)
Q Consensus       984 Dl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~ 1063 (1092)
                      ++++.....      ...-..-.-.+++|++..+....|.||-.|.+.|.++..+.+...+.|.+-.....   ..+.--
T Consensus       182 nL~n~~te~------k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~---~~~~VY  252 (347)
T KOG0647|consen  182 NLENPPTEF------KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS---VNDDVY  252 (347)
T ss_pred             EcCCCcchh------hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC---CCCceE
Confidence            997532111      01111123357899999998878999999999999999886555444432110000   111134


Q ss_pred             CEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1064 FVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1064 ~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      .|++|+|+|.-..|+|+|+||++.+||
T Consensus       253 aVNsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  253 AVNSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             EecceEeecccceEEEecCCceEEEec
Confidence            699999999999999999999999998

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=1.5e-22  Score=222.83  Aligned_cols=275  Identities=20%  Similarity=0.233  Sum_probs=220.9

Q ss_pred             cCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccc
Q 001366          742 QNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYP  821 (1092)
Q Consensus       742 ~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~  821 (1092)
                      .++...+-..--|-||+|++..-....-...-+.....+.|+++.+.|||+.|++||.-.++.|||+..... .+.... 
T Consensus       428 S~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp-rikael-  505 (705)
T KOG0639|consen  428 SNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-RIKAEL-  505 (705)
T ss_pred             cCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc-chhhhc-
Confidence            344444433345679999986542222222223345678899999999999999999999999999975211 111111 


Q ss_pred             eeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEec
Q 001366          822 AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI  901 (1092)
Q Consensus       822 ~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl  901 (1092)
                         ....-...+++.+|| .+...+|..||.|.|||+.....++.|.+|++.+.||+.++ +|..|.||+-|++|+.||+
T Consensus       506 ---tssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDl  580 (705)
T KOG0639|consen  506 ---TSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDL  580 (705)
T ss_pred             ---CCcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhh
Confidence               111234567788998 78888899999999999999999999999999999999999 9999999999999999999


Q ss_pred             CCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeE
Q 001366          902 NEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKL  980 (1092)
Q Consensus       902 ~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I  980 (1092)
                      ++++.+....-.+.|.++..+|++. ++++|..++.+.|.......  ...+.-|.+-|.+++|. -++++++.+.|+.+
T Consensus       581 regrqlqqhdF~SQIfSLg~cP~~d-WlavGMens~vevlh~skp~--kyqlhlheScVLSlKFa~cGkwfvStGkDnlL  657 (705)
T KOG0639|consen  581 REGRQLQQHDFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKPE--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL  657 (705)
T ss_pred             hhhhhhhhhhhhhhheecccCCCcc-ceeeecccCcEEEEecCCcc--ceeecccccEEEEEEecccCceeeecCchhhh
Confidence            9999888877788999999999996 99999999999888877654  36777899999999998 78899999999999


Q ss_pred             EEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeC
Q 001366          981 KLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus       981 ~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                      ..|.+.        -+..+...+ ....|.++.+|.|++||++||.|....||.+
T Consensus       658 nawrtP--------yGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  658 NAWRTP--------YGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             hhccCc--------cccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            999987        333344443 4567999999999999999999999988864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=4.7e-22  Score=225.47  Aligned_cols=285  Identities=21%  Similarity=0.285  Sum_probs=207.6

Q ss_pred             EEEEcCC---CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 001366          784 SISFDRD---EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT  860 (1092)
Q Consensus       784 sl~fspd---g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t  860 (1092)
                      ++.|++-   ...||.+..||.|.+||.....-. .........+.|...|..+.|-| +...|++++.|.++++||+.+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-LEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcc-hhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence            3566642   448999999999999998752211 11111234457999999999999 488999999999999999999


Q ss_pred             CceEEE--eeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc--------------------eeeeE-------e
Q 001366          861 GQTVSH--YIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN--------------------SLATI-------K  911 (1092)
Q Consensus       861 g~~i~~--l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~--------------------~l~~l-------~  911 (1092)
                      +.++..  +.+|...|.+++|.|.++..|++|+.||.|.|||++-..                    ....+       .
T Consensus       132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence            988776  889999999999999999999999999999999997432                    00000       0


Q ss_pred             -cCCc----eEEEEEccCCCeEEEEEEC-CCeEEEEEcCCCCcce-------EEecCC---CCCeEEEEEc-CCCEEEEE
Q 001366          912 -NIAN----VCCVQFSAHSSHLLAFGSA-DYRTYCYDLRNARAPW-------CVLAGH---EKAVSYVKFL-DSGTLVTA  974 (1092)
Q Consensus       912 -~~~~----V~sl~fsp~~~~~latgs~-Dg~I~vwDlr~~~~~~-------~~l~~H---~~~V~~v~fs-~~~~L~Sg  974 (1092)
                       +...    |+.+.| .|.. .||+++. |+.|+|||+|......       ..+.-|   ...+.++... .|.+|++.
T Consensus       212 A~s~ti~ssvTvv~f-kDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As  289 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLF-KDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS  289 (720)
T ss_pred             cccCceeeeeEEEEE-eccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence             1112    444444 4553 6777666 9999999999764321       112223   2234444443 56788888


Q ss_pred             ECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEE--EEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCC
Q 001366          975 STDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV--GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPI 1052 (1092)
Q Consensus       975 s~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v--~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i 1052 (1092)
                      +.|+.|.+|++....      ..++..+.++.+.-..+  ..+|++.+|++|+.|...+||.++..+.-.          
T Consensus       290 CtD~sIy~ynm~s~s------~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~----------  353 (720)
T KOG0321|consen  290 CTDNSIYFYNMRSLS------ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP----------  353 (720)
T ss_pred             ecCCcEEEEeccccC------cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh----------
Confidence            889999999998643      23455566655543333  578999999999999999999987655322          


Q ss_pred             CCccccCCCCCCEEEEEEeCC-CCEEEEEecCCeEEEEEc
Q 001366         1053 SGKETDDDNGLFVSSVCWRRR-SDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1053 ~~~~~~~~h~~~V~sva~spd-~~~Lasgs~DG~V~vW~l 1091 (1092)
                         ....+|...|.+|+|.|. -.-+||++.|-.++||++
T Consensus       354 ---~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  354 ---ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             ---hhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence               234678889999999984 344677799999999997

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=1.1e-23  Score=238.67  Aligned_cols=247  Identities=14%  Similarity=0.070  Sum_probs=157.6

Q ss_pred             hhccCCCCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 001366          265 MVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDY  344 (1092)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~  344 (1092)
                      +|+....+=+++++-....+.++|                .+|+|..||++..+|-+.| .+++..++.|+..+.+||++
T Consensus       682 ILAEADn~WVVrLyySFQDkdnLY----------------FVMdYIPGGDmMSLLIrmg-IFeE~LARFYIAEltcAies  744 (1034)
T KOG0608|consen  682 ILAEADNEWVVRLYYSFQDKDNLY----------------FVMDYIPGGDMMSLLIRMG-IFEEDLARFYIAELTCAIES  744 (1034)
T ss_pred             hHhhcCCcceEEEEEEeccCCceE----------------EEEeccCCccHHHHHHHhc-cCHHHHHHHHHHHHHHHHHH
Confidence            344445555555555444444444                3899999999999997766 46777999999999999999


Q ss_pred             hhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccc
Q 001366          345 HHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFS  424 (1092)
Q Consensus       345 lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (1092)
                      .|.+|+|||||||+||||+.+|+|||+||||+.-+.-.-.           +|-+               | .+++-   
T Consensus       745 VHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHd-----------skYY---------------q-~gdH~---  794 (1034)
T KOG0608|consen  745 VHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHD-----------SKYY---------------Q-EGDHH---  794 (1034)
T ss_pred             HHhccceecccCccceEEccCCceeeeeccccccceeccc-----------cccc---------------c-CCCcc---
Confidence            9999999999999999999999999999999865431100           0000               0 00000   


Q ss_pred             cccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCccccc--ccccccccccccccccccCcc
Q 001366          425 RWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNT--AQQQSTSVSEQLEEKWYASPE  502 (1092)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gt~~Y~aPE  502 (1092)
                      ++-++-.+              .+    +.+...+..               .+...  .+-+..-..+.+||+-|+|||
T Consensus       795 RqDSmep~--------------~e----~~d~~~~lk---------------vL~~ra~~~h~r~~ahslvgt~nyiape  841 (1034)
T KOG0608|consen  795 RQDSMEPS--------------PE----WADISKCLK---------------VLERRAMRQHQRILAHSLVGTPNYIAPE  841 (1034)
T ss_pred             ccccCCCc--------------hh----hccccccch---------------HHHHHHHhhhhhhhhhhhcCCCcccChH
Confidence            00000000              00    000000000               00000  000111123689999999999


Q ss_pred             cccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHHHHHhccccC--CCCCCCCCChhHHHHHHhccccCCCCCC---
Q 001366          503 ELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRI--LPPSFLSENPKEAGFCLWQLHPEPLSRP---  574 (1092)
Q Consensus       503 ~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~li~~lL~~dP~~Rp---  574 (1092)
                      +|....|+..+|+||.|||||||+.|   |-........++.+.-+.  -.+.-...++++.+||.+|. -++++|.   
T Consensus       842 vl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv~nw~~~l~~~~~~~ls~e~~~li~kLc-~sad~RLGkn  920 (1034)
T KOG0608|consen  842 VLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYKVINWRNFLHIPYQGNLSKEALDLIQKLC-CSADSRLGKN  920 (1034)
T ss_pred             HhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcceeeeeehhhccccccccccCHHHHHHHHHHh-cChhhhhccc
Confidence            99999999999999999999999975   433333222232222211  11223355788889998876 4788885   


Q ss_pred             CHHHHhhhhhhhhhhccc
Q 001366          575 TTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       575 sa~eiL~~~~~~~~~~~~  592 (1092)
                      .+.++..||||.......
T Consensus       921 g~d~vKaHpfFkgIDfss  938 (1034)
T KOG0608|consen  921 GADQVKAHPFFKGIDFSS  938 (1034)
T ss_pred             chhhhhcCccccccchHh
Confidence            457799999999875443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=8.3e-21  Score=217.26  Aligned_cols=283  Identities=15%  Similarity=0.210  Sum_probs=231.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      -....|.++||+.+.+.||.+-.||.|.||++...     -...+...-+....|.+++|.+  +..|.|.+.+|+|.-|
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-----w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~Ew   95 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-----WFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEW   95 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCC-----ceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEE
Confidence            34678999999999999999999999999998751     1122233334577899999996  6789999999999999


Q ss_pred             ECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe---cCCceEEEEEccCCCeEEEEEE
Q 001366          857 DACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK---NIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       857 D~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~---~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      |+.+++....+..-.+.||+++.+| .++.++.|++||.+..+++..++......   ..+.|.+++|+|++. .+++|+
T Consensus        96 Dl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs  173 (691)
T KOG2048|consen   96 DLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGS  173 (691)
T ss_pred             ecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecc
Confidence            9999999999998899999999999 78899999999988888888776554332   358899999999994 799999


Q ss_pred             CCCeEEEEEcCCCCcceE------Eec-CCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCC
Q 001366          934 ADYRTYCYDLRNARAPWC------VLA-GHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHT 1006 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~------~l~-~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~ 1006 (1092)
                      .||.|++||..++.....      .+. +...-|++|.|..++.|++|.+-|+|++||-.        .+..+..+..|.
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~--------~gTLiqS~~~h~  245 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSI--------FGTLIQSHSCHD  245 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEccc--------Ccchhhhhhhhh
Confidence            999999999998765331      111 13346788888888899999999999999988        466788888999


Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeE
Q 001366         1007 NEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCI 1086 (1092)
Q Consensus      1007 ~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V 1086 (1092)
                      ..|.+++.++++.++++++.|+.|.-|.......-. +.+         .....|...|.++|..++  .|++||.|+.+
T Consensus       246 adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~w-v~~---------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l  313 (691)
T KOG2048|consen  246 ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEW-VIN---------SRRDLHAHDVRSMAVIEN--ALISGGRDFTL  313 (691)
T ss_pred             cceeEEEEcCCCCeEEEccCCCceEEEEecCCccce-eee---------ccccCCcccceeeeeecc--eEEecceeeEE
Confidence            999999999999999999999999999766554311 111         122567778999998887  89999999987


Q ss_pred             EE
Q 001366         1087 KV 1088 (1092)
Q Consensus      1087 ~v 1088 (1092)
                      .+
T Consensus       314 ~i  315 (691)
T KOG2048|consen  314 AI  315 (691)
T ss_pred             EE
Confidence            65

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1092
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-12
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-12
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-12
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-12
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-12
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-12
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-12
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		5e-12
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-12
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-11
2h9l_A	329	Wdr5delta23 Length = 329		1e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-11
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-11
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-11
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-11
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-10
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-10
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		6e-10
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-09
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-09
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-09
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-09
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-09
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		2e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		5e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-07
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		4e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		7e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		8e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		5e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		6e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		7e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		9e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		3e-04
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		3e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		7e-04

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 36   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 90
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+  S+ L+  GS D     +D++  +          
Sbjct: 91   WDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSD 149
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 150  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 209
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 210  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261
Query: 1032 AYH 1034
             ++
Sbjct: 262  IWN 264

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 22/205 (10%)
Query: 841  KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKL 898
            KN++     D  +++++  TG+ V  +  H     S+    VHPTK  + SGSDD +VKL
Sbjct: 67   KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI---AVHPTKPYVLSGSDDLTVKL 123
Query: 899  WNINEKNSLATIKNIAN----VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA 954
            WN   +N+ A  +        V CV F+       A G  D     + L  +   + +  
Sbjct: 124  WNW--ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 955  GHEKAVSYVKFL---DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011
            G E+ V+YV +    D   ++TAS D  +K+WD +        T +C  T  GH +  +F
Sbjct: 182  GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------TKSCVATLEGHMSNVSF 233
Query: 1012 VGLSTADGYIACGSESNEVYAYHRS 1036
                     I  GSE   +  ++ S
Sbjct: 234  AVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 33   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 87
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+  S+ L+  GS D     +D++  +          
Sbjct: 88   WDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSD 146
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 147  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 206
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 207  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 258
Query: 1032 AYH 1034
             ++
Sbjct: 259  IWN 261

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 22/205 (10%)
Query: 841  KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKL 898
            KN++     D  +++++  TG+ V  +  H     S+    VHPTK  + SGSDD +VKL
Sbjct: 67   KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI---AVHPTKPYVLSGSDDLTVKL 123
Query: 899  WNINEKNSLATIKNIAN----VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA 954
            WN   +N+ A  +        V CV F+       A G  D     + L  +   + +  
Sbjct: 124  WNW--ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 955  GHEKAVSYVKFL---DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011
            G E+ V+YV +    D   ++TAS D  +K+WD +        T +C  T  GH +  +F
Sbjct: 182  GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------TKSCVATLEGHMSNVSF 233
Query: 1012 VGLSTADGYIACGSESNEVYAYHRS 1036
                     I  GSE   +  ++ S
Sbjct: 234  AVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 22/205 (10%)
Query: 841  KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKL 898
            KN++     D  +++++  TG+ V  +  H     S+    VHPTK  + SGSDD +VKL
Sbjct: 67   KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI---AVHPTKPYVLSGSDDLTVKL 123
Query: 899  WNINEKNSLATIKNIAN----VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA 954
            WN   +N+ A  +        V CV F+       A G  D     + L  +   + +  
Sbjct: 124  WNW--ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 955  GHEKAVSYVKFL---DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011
            G E+ V+YV +    D   ++TAS D  +K+WD +        T +C  T  GH +  +F
Sbjct: 182  GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------TKSCVATLEGHMSNVSF 233
Query: 1012 VGLSTADGYIACGSESNEVYAYHRS 1036
                     I  GSE   +  ++ S
Sbjct: 234  AVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 37   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 91
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+  S+ L+  GS D     +D++  +          
Sbjct: 92   WDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 151  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 211  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 1032 AYH 1034
             ++
Sbjct: 263  IWN 265

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 37   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 91
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+  S+ L+  GS D     +D++  +          
Sbjct: 92   WDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 151  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 211  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 1032 AYH 1034
             ++
Sbjct: 263  IWN 265

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 22/205 (10%)
Query: 841  KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK--LASGSDDCSVKL 898
            KN++     D  +++++  TG+ V  +  H     S+    VHPTK  + SGSDD +VKL
Sbjct: 67   KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI---AVHPTKPYVLSGSDDLTVKL 123
Query: 899  WNINEKNSLATIKNIAN----VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA 954
            WN   +N+ A  +        V CV F+       A G  D     + L  +   + +  
Sbjct: 124  WNW--ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 955  GHEKAVSYVKFL---DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011
            G E+ V+YV +    D   ++TAS D  +K+WD +        T +C  T  GH +  +F
Sbjct: 182  GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------TKSCVATLEGHMSNVSF 233
Query: 1012 VGLSTADGYIACGSESNEVYAYHRS 1036
                     I  GSE   +  ++ S
Sbjct: 234  AVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D +      L S SDD ++K+
Sbjct: 61   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL-----LVSASDDKTLKI 115
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++  +          
Sbjct: 116  WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 174
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 175  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 234
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 235  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 286
Query: 1032 AYH 1034
             ++
Sbjct: 287  IWN 289

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D +      L S SDD ++K+
Sbjct: 59   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL-----LVSASDDKTLKI 113
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++  +          
Sbjct: 114  WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 172
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 173  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 232
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 233  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 1032 AYH 1034
             ++
Sbjct: 285  IWN 287

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D +      L S SDD ++K+
Sbjct: 43   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL-----LVSASDDKTLKI 97
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++  +          
Sbjct: 98   WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 157  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 217  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 1032 AYH 1034
             ++
Sbjct: 269  IWN 271

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 54   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 108
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++  +          
Sbjct: 109  WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 167
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 168  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 227
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 228  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 279
Query: 1032 AYH 1034
             ++
Sbjct: 280  IWN 282

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 40   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 94
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++  +          
Sbjct: 95   WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 154  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 214  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 1032 AYH 1034
             ++
Sbjct: 266  IWN 268

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 40   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 94
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++  +          
Sbjct: 95   WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 154  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 214  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 1032 AYH 1034
             ++
Sbjct: 266  IWN 268

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 104/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D +      L S SDD ++K+
Sbjct: 43   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL-----LVSASDDKTLKI 97
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++  +          
Sbjct: 98   WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 157  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 217  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 1032 AYH 1034
             ++
Sbjct: 269  IWN 271

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 43   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 97
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++  +          
Sbjct: 98   WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 157  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 217  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 1032 AYH 1034
             ++
Sbjct: 269  IWN 271

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 38   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 92
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++  +          
Sbjct: 93   WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 151
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 152  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 211
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 212  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 263
Query: 1032 AYH 1034
             ++
Sbjct: 264  IWN 266

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 42   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 96
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++  +          
Sbjct: 97   WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 155
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 156  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 215
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 216  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 267
Query: 1032 AYH 1034
             ++
Sbjct: 268  IWN 270

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 102/243 (41%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 40   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 94
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++             
Sbjct: 95   WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSD 153
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 154  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 214  TLDNDLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY 265
Query: 1032 AYH 1034
             ++
Sbjct: 266  IWN 268

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 102/243 (41%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LAS+  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 40   WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 94
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++             
Sbjct: 95   WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSD 153
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 154  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 214  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY 265
Query: 1032 AYH 1034
             ++
Sbjct: 266  IWN 268

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 127/288 (44%), Gaps = 35/288 (12%)
Query: 781  VICSISFDRDEDHFAAAGVSKKIKIFEFN------ALFNDSVDVYYP-----AVEMSNRS 829
            V+C + F  D ++ A  G +K  +++  +       L +DS     P     +   S+  
Sbjct: 66   VVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 124
Query: 830  KLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPT--KL 887
             +  VC++   K +LA+   D ++++WD    + V     HE+  +S+D+    P+  KL
Sbjct: 125  YIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY---FPSGDKL 180
Query: 888  ASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNAR 947
             SGS D +V++W++       T+     V  V  S      +A GS D     +D   + 
Sbjct: 181  VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD---SE 237
Query: 948  APWCVL---------AGHEKAVSYVKFLDSG-TLVTASTDNKLKLWDLK----RTSHTGP 993
              + V           GH+ +V  V F   G ++V+ S D  +KLW+L+    ++    P
Sbjct: 238  TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 994  STNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPI 1041
            ++  C +T+ GH +    V  +  D YI  GS+   V  + +    P+
Sbjct: 298  NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 843  YLASADYDGVVKLWDACTGQ---TVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            +LA++  D ++K+W A  G+   T+S H +     AWS D        L S SDD ++K+
Sbjct: 40   WLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SNLLVSASDDKTLKI 94
Query: 899  WNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--------- 948
            W+++    L T+K  +N V C  F+   S+L+  GS D     +D++  +          
Sbjct: 95   WDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 949  ------------------------PWCVLAGH---------EKAVSYVKFLDSGTLVTAS 975
                                     W   +G             VS+VKF  +G  + A+
Sbjct: 154  PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 976  T-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN--FVGLSTADG-YIACGSESNEVY 1031
            T DN LKLWD         S   C  T++GH NEK   F   S   G +I  GSE N VY
Sbjct: 214  TLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 1032 AYH 1034
             ++
Sbjct: 266  IWN 268

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 24/202 (11%)
Query: 836  WNNYIK-NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC 894
            W++ ++ N + S   D  +K+W+A TG+ +     H     +V    +H  ++ SGS D 
Sbjct: 163  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTS---TVRCMHLHEKRVVSGSRDA 219
Query: 895  SVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV- 952
            ++++W+I     L  +  ++A V CVQ+       +  G+ D+    +D        C+ 
Sbjct: 220  TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPETET---CLH 273
Query: 953  -LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011
             L GH   V  ++F D   +V+ S D  +++WD++        T  C  T +GH +  + 
Sbjct: 274  TLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVE--------TGNCIHTLTGHQSLTS- 323
Query: 1012 VGLSTADGYIACGSESNEVYAY 1033
             G+   D  +  G+  + V  +
Sbjct: 324  -GMELKDNILVSGNADSTVKIW 344

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 88/194 (45%), Gaps = 17/194 (8%)
Query: 844  LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE 903
            +ASA  D  VKLW+   GQ +     H    W V FS    T +AS SDD +VKLWN N 
Sbjct: 277  IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNRNG 334
Query: 904  KNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYV 963
            ++      + ++V  V FS      +A  S D     ++ RN +     L GH  +V  V
Sbjct: 335  QHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGV 391
Query: 964  KFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSL-TFSGHTNEKNFVGLSTADGYI 1021
             F  D  T+ +AS D  +KLW+           N   L T +GH++    V  S  D  I
Sbjct: 392  AFSPDGQTIASASDDKTVKLWN----------RNGQLLQTLTGHSSSVWGVAFSPDDQTI 441
Query: 1022 ACGSESNEVYAYHR 1035
            A  S+   V  ++R
Sbjct: 442  ASASDDKTVKLWNR 455

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 101/238 (42%), Gaps = 20/238 (8%)
Query: 834  VCWNNYIKNYLASADYDGVVKLWDACT----GQTV---SHYIEHEKRAWSVDFSQVHPTK 886
            + WN  +  +L SA  D  + LWD       G+ V   + +  H      V +  +H + 
Sbjct: 183  LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 887  LASGSDDCSVKLWNINEKN----SLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
              S +DD  + +W+    N    S +   + A V C+ F+ +S  +LA GSAD     +D
Sbjct: 243  FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 943  LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS--TDNKLKLWDLKRTSHTGPSTNA--- 997
            LRN +        H+  +  V++      + AS  TD +L +WDL +        +A   
Sbjct: 303  LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG 362
Query: 998  -CSLTF--SGHTNEKNFVGLSTADGYIACG-SESNEVYAYHRSLPMPITSYKFGSIDP 1051
               L F   GHT + +    +  + ++ C  SE N +  +  +  +       GS+DP
Sbjct: 363  PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP 420

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 13/167 (7%)
Query: 834 VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-------HEKRAWSVDFSQVHPTK 886
           + WN+ +  +L SA  D  V LWD   G      ++       H      V +  +H + 
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 887 LASGSDDCSVKLW----NINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
             S +DD  + +W    N   K S     + A V C+ F+ +S  +LA GSAD     +D
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 943 LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS--TDNKLKLWDLKR 987
           LRN +        H+  +  V +      + AS  TD +L +WDL +
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 20/215 (9%)
Query: 834  VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-------HEKRAWSVDFSQVHPTK 886
            + WN  +  YL SA  D  + LWD          I+       H      V +  +H + 
Sbjct: 187  LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 887  LASGSDDCSVKLWNINEKN----SLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
              S +DD  + +W+    N    S     + A V C+ F+ +S  +LA GSAD     +D
Sbjct: 247  FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 943  LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS--TDNKLKLWDLKRTSHTGPSTNA--- 997
            LRN +        H+  +  V++      + AS  TD +L +WDL +      + +A   
Sbjct: 307  LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366
Query: 998  -CSLTF--SGHTNEKNFVGLSTADGYIACG-SESN 1028
               L F   GHT + +    +  + +I C  SE N
Sbjct: 367  PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 13/167 (7%)
Query: 834 VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-------HEKRAWSVDFSQVHPTK 886
           + WN+ +  +L SA  D  V LWD   G      ++       H      V +  +H + 
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 887 LASGSDDCSVKLW----NINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
             S +DD  + +W    N   K S     + A V C+ F+ +S  +LA GSAD     +D
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 943 LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS--TDNKLKLWDLKR 987
           LRN +        H+  +  V +      + AS  TD +L +WDL +
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 20/215 (9%)
Query: 834  VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-------HEKRAWSVDFSQVHPTK 886
            + WN  +  YL SA  D  + LWD          I+       H      V +  +H + 
Sbjct: 189  LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 248
Query: 887  LASGSDDCSVKLWNINEKN----SLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
              S +DD  + +W+    N    S     + A V C+ F+ +S  +LA GSAD     +D
Sbjct: 249  FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 943  LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS--TDNKLKLWDLKRTSHTGPSTNA--- 997
            LRN +        H+  +  V++      + AS  TD +L +WDL +      + +A   
Sbjct: 309  LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 368
Query: 998  -CSLTF--SGHTNEKNFVGLSTADGYIACG-SESN 1028
               L F   GHT + +    +  + +I C  SE N
Sbjct: 369  PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 403

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 20/215 (9%)
Query: 834  VCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-------HEKRAWSVDFSQVHPTK 886
            + WN  +  YL SA  D  + LWD          I+       H      V +  +H + 
Sbjct: 191  LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 250
Query: 887  LASGSDDCSVKLWNINEKN----SLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
              S +DD  + +W+    N    S     + A V C+ F+ +S  +LA GSAD     +D
Sbjct: 251  FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 943  LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS--TDNKLKLWDLKRTSHTGPSTNA--- 997
            LRN +        H+  +  V++      + AS  TD +L +WDL +      + +A   
Sbjct: 311  LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 370
Query: 998  -CSLTF--SGHTNEKNFVGLSTADGYIACG-SESN 1028
               L F   GHT + +    +  + +I C  SE N
Sbjct: 371  PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 405

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSF 551
           Q+  K Y SPE++ G   +   +I+SLG++ FEL   F ++      ++D+R+   PP F
Sbjct: 190 QVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLF 249
Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQSEV 584
             + P E       L P P+ RP    I+++ V
Sbjct: 250 TQKYPCEYVMVQDMLSPSPMERPEAINIIENAV 282

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
           +  S  +DG ++LWD  TG T   ++ H K   SV FS  +  ++ SGS D ++KLW   
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLW--- 155
Query: 903 EKNSLATIKNIAN-------VCCVQFSAHSSH-LLAFGSADYRTYCYDLRNARAPWCVLA 954
             N+L   K           V CV+FS +SS+ ++     D     ++L N +       
Sbjct: 156 --NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK-TNHI 212
Query: 955 GHEKAVSYVKFLDSGTL-VTASTDNKLKLWDLKRTSH 990
           GH   ++ V     G+L  +   D +  LWDL    H
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 24/161 (14%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
           +  S  +DG ++LWD  TG T   ++ H K   SV FS  +  ++ SGS D ++KLW   
Sbjct: 77  FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLW--- 132
Query: 903 EKNSLATIKNIAN-------VCCVQFSAHSSH-LLAFGSADYRTYCYDLRNARAPWCVLA 954
             N+L   K           V CV+FS +SS+ ++     D     ++L N     C L 
Sbjct: 133 --NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-----CKLK 185
Query: 955 ----GHEKAVSYVKFLDSGTL-VTASTDNKLKLWDLKRTSH 990
               GH   ++ V     G+L  +   D +  LWDL    H
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 226

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 787 FDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLAS 846
           F +D    A+ G  K +++F+         +     +++         C  +   +Y+A+
Sbjct: 630 FSQDGQRIASCGADKTLQVFK--------AETGEKLLDIKAHEDEVLCCAFSSDDSYIAT 681
Query: 847 ADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFS-QVHPTKLASGSDDCSVKLWNINEK- 904
              D  VK+WD+ TG+ V  Y EH ++     F+ + +   LA+GS+D  +KLW++N+K 
Sbjct: 682 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 741
Query: 905 --NSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
             N++    N  N C  +FS     LLA  SAD     +D+R+A
Sbjct: 742 CRNTMFGHTNSVNHC--RFSP-DDELLASCSADGTLRLWDVRSA 782

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 787 FDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLAS 846
           F +D    A+ G  K +++F+         +     +++         C  +   +Y+A+
Sbjct: 623 FSQDGQRIASCGADKTLQVFK--------AETGEKLLDIKAHEDEVLCCAFSSDDSYIAT 674
Query: 847 ADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFS-QVHPTKLASGSDDCSVKLWNINEK- 904
              D  VK+WD+ TG+ V  Y EH ++     F+ + +   LA+GS+D  +KLW++N+K 
Sbjct: 675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734
Query: 905 --NSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
             N++    N  N C  +FS     LLA  SAD     +D+R+A
Sbjct: 735 CRNTMFGHTNSVNHC--RFSP-DDELLASCSADGTLRLWDVRSA 775

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 492 QLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSF 551
           Q+  K Y SPE++ G   +   +I+SLG++ FEL   F ++      ++D+R+   P  F
Sbjct: 236 QVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLKFPLLF 295
Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQSEV 584
             + P+E       L P P  RP   +I+++ +
Sbjct: 296 TQKYPQEHMMVQDMLSPSPTERPEATDIIENAI 328

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
           N+  SA +D  ++LW+   GQ    ++ H K   SV FS  +  ++ SG  D ++++WN+
Sbjct: 80  NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN-RQIVSGGRDNALRVWNV 138
Query: 902 NEK--NSLATIKNIANVCCVQFS-AHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK 958
             +  ++L+   +   V CV+FS +  + ++  G  D     +DL   R     L GH  
Sbjct: 139 KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV-TDLKGHTN 197
Query: 959 AVSYVKFLDSGTLVTAS-TDNKLKLWDLKR 987
            V+ V     G+L  +S  D   +LWDL +
Sbjct: 198 YVTSVTVSPDGSLCASSDKDGVARLWDLTK 227

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
           +  S  +DG ++LWD   G +   ++ H K   SV FS +   ++ S S D ++KLW   
Sbjct: 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLW--- 499
Query: 903 EKNSLATIKNIAN---------VCCVQFSAHSSH-LLAFGSADYRTYCYDLRNARAPWCV 952
             N+L   K   +         V CV+FS ++    +   S D     ++L N +     
Sbjct: 500 --NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR-ST 556
Query: 953 LAGHEKAVSYVKFLDSGTL-VTASTDNKLKLWDL 985
           LAGH   VS V     G+L  +   D  + LWDL
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 111/291 (38%), Gaps = 51/291 (17%)
Query: 772  TGEFNNS----ANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSN 827
            TG+F  +     + +  ISFD      A+      IK+++F     + +   +      N
Sbjct: 139  TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHG--HDHN 194
Query: 828  RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP--- 884
             S +S +   ++I     SA  D  +K+W+  TG  V  +  H  R W      V P   
Sbjct: 195  VSSVSIMPNGDHI----VSASRDKTIKMWEVQTGYCVKTFTGH--REW---VRMVRPNQD 245
Query: 885  -TKLASGSDDCSVKLWNINEKNSLATIKNIANVC-CVQFSAHSSH--------------- 927
             T +AS S+D +V++W +  K   A ++   +V  C+ ++  SS+               
Sbjct: 246  GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 928  ----LLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNK-LKL 982
                 L  GS D     +D+         L GH+  V  V F   G  + +  D+K L++
Sbjct: 306  KPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 983  WDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAY 1033
            WD K           C  T + H +    +       Y+  GS    V  +
Sbjct: 365  WDYK--------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPT--KLASGSDDCSVKLW 899
           N   S   D    +WD  +GQ V  +  HE    SV +   +P+    ASGSDD + +L+
Sbjct: 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY---YPSGDAFASGSDDATCRLY 267
Query: 900 NINEKNSLATIKN---IANVCCVQFSAHSSHLLAFGSADYRTYCYD-LRNARAPWCVLAG 955
           ++     +A       I     V FS  S  LL  G  DY    +D L+ +R    +L G
Sbjct: 268 DLRADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVS--ILFG 324
Query: 956 HEKAVSYVKFLDSGT-LVTASTDNKLKLW 983
           HE  VS ++    GT   + S D+ L++W
Sbjct: 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 843  YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
            Y  SA +D  ++LWD  TG+T   ++ H+    SVD  +   + + SGS D ++K+W I 
Sbjct: 79   YALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK-KASXIISGSRDKTIKVWTI- 136
Query: 903  EKNSLATIKN----IANVCCVQFSAHSSHLLAFGSA--DYRTYCYDLRNARAPWCVLAGH 956
            +   LAT+      ++ V  V         +   SA  D     ++L   +       GH
Sbjct: 137  KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIE-ADFIGH 195
Query: 957  EKAVSYVKFLDSGTLV-TASTDNKLKLWDL--KRTSHTGPSTNAC-SLTFS 1003
               ++ +     GTL+ +A  D ++ LW+L  K+  +T  + +   SL FS
Sbjct: 196  NSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFS 246

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 844  LASADYDGVVKLWDACTGQTVSH---YIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
            + +   D  + +WD  +   ++     + H      VDF   +   + S S D ++K+WN
Sbjct: 226  MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY---IVSASGDRTIKVWN 282
Query: 901  INEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
             +    + T+  +   + C+Q+      L+  GS+D     +D+    A   VL GHE+ 
Sbjct: 283  TSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEEL 338
Query: 960  VSYVKFLDSGTLVTASTDNKLKLWDL-KRTSHTGPSTNACSLTFSGHTNE 1008
            V  ++F D+  +V+ + D K+K+WDL        P+   C  T   H+  
Sbjct: 339  VRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 387

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 60/199 (30%)
Query: 843  YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
            Y  SA +D  ++LWD  TG+T   ++ H+    SVD  +   + + SGS D ++K+W I 
Sbjct: 79   YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI- 136
Query: 903  EKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSY 962
            +   LAT                                           L GH   VS 
Sbjct: 137  KGQCLAT-------------------------------------------LLGHNDWVSQ 153
Query: 963  VKFL-------DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLS 1015
            V+ +       DS T+++A  D  +K W+L +              F GH +  N +  S
Sbjct: 154  VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--------IEADFIGHNSNINTLTAS 205
Query: 1016 TADGYIACGSESNEVYAYH 1034
                 IA   +  E+  ++
Sbjct: 206  PDGTLIASAGKDGEIMLWN 224

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 60/199 (30%)
Query: 843  YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
            Y  SA +D  ++LWD  TG+T   ++ H+    SVD  +   + + SGS D ++K+W I 
Sbjct: 79   YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI- 136
Query: 903  EKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSY 962
            +   LAT                                           L GH   VS 
Sbjct: 137  KGQCLAT-------------------------------------------LLGHNDWVSQ 153
Query: 963  VKFL-------DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLS 1015
            V+ +       DS T+++A  D  +K W+L +              F GH +  N +  S
Sbjct: 154  VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--------IEADFIGHNSNINTLTAS 205
Query: 1016 TADGYIACGSESNEVYAYH 1034
                 IA   +  E+  ++
Sbjct: 206  PDGTLIASAGKDGEIMLWN 224

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 60/199 (30%)
Query: 843  YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
            Y  SA +D  ++LWD  TG+T   ++ H+    SVD  +   + + SGS D ++K+W I 
Sbjct: 79   YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI- 136
Query: 903  EKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSY 962
            +   LAT                                           L GH   VS 
Sbjct: 137  KGQCLAT-------------------------------------------LLGHNDWVSQ 153
Query: 963  VKFL-------DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLS 1015
            V+ +       DS T+++A  D  +K W+L +              F GH +  N +  S
Sbjct: 154  VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--------IEADFIGHNSNINTLTAS 205
Query: 1016 TADGYIACGSESNEVYAYH 1034
                 IA   +  E+  ++
Sbjct: 206  PDGTLIASAGKDGEIMLWN 224

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 60/199 (30%)
Query: 843  YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
            Y  SA +D  ++LWD  TG+T   ++ H+    SVD  +   + + SGS D ++K+W I 
Sbjct: 79   YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI- 136
Query: 903  EKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSY 962
            +   LAT                                           L GH   VS 
Sbjct: 137  KGQCLAT-------------------------------------------LLGHNDWVSQ 153
Query: 963  VKFL-------DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLS 1015
            V+ +       DS T+++A  D  +K W+L +              F GH +  N +  S
Sbjct: 154  VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--------IEADFIGHNSNINTLTAS 205
Query: 1016 TADGYIACGSESNEVYAYH 1034
                 IA   +  E+  ++
Sbjct: 206  PDGTLIASAGKDGEIMLWN 224

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 60/199 (30%)
Query: 843  YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
            Y  SA +D  ++LWD  TG+T   ++ H+    SVD  +   + + SGS D ++K+W I 
Sbjct: 73   YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTI- 130
Query: 903  EKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSY 962
            +   LAT                                           L GH   VS 
Sbjct: 131  KGQCLAT-------------------------------------------LLGHNDWVSQ 147
Query: 963  VKFL-------DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLS 1015
            V+ +       DS T+++A  D  +K W+L +              F GH +  N +  S
Sbjct: 148  VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--------IEADFIGHNSNINTLTAS 199
Query: 1016 TADGYIACGSESNEVYAYH 1034
                 IA   +  E+  ++
Sbjct: 200  PDGTLIASAGKDGEIMLWN 218

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 916  VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS 975
            + C+QF     + +  G+ D     YD  N +     L+GH+  V  +K+   G LV+ S
Sbjct: 125  ITCLQFE---DNYVITGADDKMIRVYDSINKKFL-LQLSGHDGGVWALKYAHGGILVSGS 180
Query: 976  TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG--YIACGSESNEVYAY 1033
            TD  +++WD+K+          C+  F GH +    + +       YI  GS  N ++ +
Sbjct: 181  TDRTVRVWDIKK--------GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 916  VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS 975
            + C+QF     + +  G+ D     YD  N +     L+GH+  V  +K+   G LV+ S
Sbjct: 125  ITCLQFE---DNYVITGADDKXIRVYDSINKKFL-LQLSGHDGGVWALKYAHGGILVSGS 180
Query: 976  TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG--YIACGSESNEVYAY 1033
            TD  +++WD+K+          C+  F GH +    + +       YI  GS  N ++ +
Sbjct: 181  TDRTVRVWDIKK--------GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 843 YLASADYDGVVKLWDACTGQ----TVSHYIEHEKRAWSVDFSQVHPTKLASG--SDDCSV 896
           +LAS   D +V +W +  G+     +  + +H+    +V +       LA+G  + D  +
Sbjct: 255 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 314
Query: 897 KLWNINEKNSLATIKNIANVCCVQFSAHSSHLLA---FGSADYRTYCYDLRNARAPWCVL 953
           ++WN+     L+ +   + VC + +S H   L++   F       + Y      A    L
Sbjct: 315 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE---L 371
Query: 954 AGH-EKAVSYVKFLDSGTLVTASTDNKLKLW 983
            GH  + +S     D  T+ +A+ D  L+LW
Sbjct: 372 KGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 843 YLASADYDGVVKLWDACTGQ----TVSHYIEHEKRAWSVDFSQVHPTKLASG--SDDCSV 896
           +LAS   D +V +W +  G+     +  + +H+    +V +       LA+G  + D  +
Sbjct: 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303
Query: 897 KLWNINEKNSLATIKNIANVCCVQFSAHSSHLLA---FGSADYRTYCYDLRNARAPWCVL 953
           ++WN+     L+ +   + VC + +S H   L++   F       + Y      A    L
Sbjct: 304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE---L 360
Query: 954 AGH-EKAVSYVKFLDSGTLVTASTDNKLKLW 983
            GH  + +S     D  T+ +A+ D  L+LW
Sbjct: 361 KGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPK 557
           Y SPE++S        ++Y+LG++  EL    D+    +   +DLRD I+   F   + K
Sbjct: 201 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIF---DKK 257
Query: 558 EAGFCLWQLHPEPLSRPTTREILQS 582
           E       L  +P  RP T EIL++
Sbjct: 258 EKTLLQKLLSKKPEDRPNTSEILRT 282

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 498 YASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPK 557
           Y SPE++S        ++Y+LG++  EL    D+    +   +DLRD I+   F   + K
Sbjct: 187 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIF---DKK 243
Query: 558 EAGFCLWQLHPEPLSRPTTREILQS 582
           E       L  +P  RP T EIL++
Sbjct: 244 EKTLLQKLLSKKPEDRPNTSEILRT 268

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 104/261 (39%), Gaps = 35/261 (13%)
Query: 827  NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK 886
            +R  +  V W  +      S+ +D  +K+WD  T QT   +   E+  +S   S V    
Sbjct: 98   HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKH 156
Query: 887  --LASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDL 943
              +A G+    V+L ++   +    ++ +   +  V +S    ++LA  SAD R   +D+
Sbjct: 157  CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 944  RNARAPWCVL-----------------AGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDL 985
            R  RA  C++                   H   V+ + F   G  L+T  TDN+++LW+ 
Sbjct: 217  R--RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN- 273
Query: 986  KRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYK 1045
               S  G +T    L   G     +  GL      ++CG  S  V+  + S     T Y 
Sbjct: 274  ---SSNGENT----LVNYGKVCNNSKKGLKFT---VSCGCSSEFVFVPYGSTIAVYTVYS 323
Query: 1046 FGSIDPISGKETDDDNGLFVS 1066
               I  + G     D  +F S
Sbjct: 324  GEQITMLKGHYKTVDCCVFQS 344

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Query: 840 IKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW 899
           I N  + AD DG + +    TG        H+  A S  +     T+L +GS D +  LW
Sbjct: 134 IFNLSSQADRDGNMPVSRVLTG--------HKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 900 NINEKNSLATIK------NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVL 953
           ++     ++         + A+V  +  ++ ++++   GS D     +DLR         
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245
Query: 954 AGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSH 990
            GHE  ++ VKF   G    T S D   +L+D+ RT H
Sbjct: 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM-RTGH 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1092
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.98
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.98
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.98
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.98
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.98
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.98
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.98
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.98
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.98
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.98
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.98
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.98
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.98
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.98
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.98
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.98
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.98
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.98
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.97
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.97
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.97
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.97
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.97
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.97
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.97
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.97
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.97
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.97
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.97
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.97
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.97
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.97
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.97
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.97
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.97
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.97
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.97
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.97
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.97
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.97
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.97
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.97
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.97
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.97
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.97
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.97
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.97
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.97
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.97
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.97
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.97
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.97
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.97
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.97
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.97
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.97
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.97
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.97
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.97
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.97
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.97
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.97
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.97
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.97
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.97
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.97
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.97
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.97
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.97
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.97
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.97
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.97
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.97
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.97
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.97
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.97
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.97
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.97
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.97
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.97
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.97
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.97
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.97
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.97
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.97
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.97
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.97
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.97
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.97
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.97
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.97
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.97
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.97
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.97
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.97
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.97
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.97
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.97
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.97
3bhy_A	283	Death-associated protein kinase 3; death associate	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.97
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.97
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.97
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.97
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.97
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.96
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.96
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.96
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.96
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.96
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.96
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.96
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.96
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.96
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.96
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.96
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.96
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.96
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.96
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.96
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.96
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.96
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.96
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.96
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.96
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.96
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.96
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.96
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.96
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.96
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.96
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.96
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.96
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.96
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.96
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.96
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.96
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.96
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.96
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.96
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.96
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.96
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.96
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.96
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.96
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.96
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.96
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.96
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.96
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.96
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.96
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.96
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.96
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.96
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.96
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.96
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.96
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.96
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.96
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.96
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.96
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.96
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.96
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.96
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.96
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.96
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.96
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.96
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.96
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.95
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.95
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.95
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.95
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.95
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.95
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.95
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.95
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.95
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.95
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.95
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.95
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.95
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.95
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.95
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.95
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.95
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
3uqc_A	286	Probable conserved transmembrane protein; structur	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.79
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.76
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.76
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.75
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.7
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.7
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.7
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.65
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.61
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.61
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.61
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.6
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.59
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.52
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.49
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.49
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.49
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.47
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.47
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.46
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.46
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.46
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.45
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.45
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.42
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.4
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.4
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.39
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.39
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.39
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.39
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.39
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.38
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.33
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.33
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.3
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.29
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.26
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.25
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.23
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.19
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.17
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.17
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.14
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.13
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.13
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.12
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.1
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.09
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.07
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.07
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.05
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.04
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.03
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.01
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.01
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.97
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.92
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.87
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.81
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.78
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.75
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.74
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.74
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.73
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.71
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.7
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.7
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.64
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.64
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.59
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.58
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.56
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.47
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.46
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.41
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.37
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.31
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.29
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.29
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.28
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.26
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.24

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-40  Score=390.69  Aligned_cols=284  Identities=18%  Similarity=0.290  Sum_probs=258.9

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      +.+|..+|++++|+|++.+||+|+.|++|+|||+.+.       .......+|...|.+++|+|+ +.+|++|+.||+|+
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-------~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~  175 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-------DFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIK  175 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-------CCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCC
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEE
Confidence            5689999999999999999999999999999998752       223455679999999999998 88999999999999


Q ss_pred             EEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEE
Q 001366          855 LWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      |||+.+++++..+.+|...|++++|+| ++..|++|+.|++|++||++++.++.++. |...|.++.|+|++. +|++|+
T Consensus       176 iwd~~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s  253 (410)
T 1vyh_C          176 LWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCS  253 (410)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred             EEeCCCCceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC-EEEEEc
Confidence            999999999999999999999999999 88999999999999999999999999887 567899999999985 999999


Q ss_pred             CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC---------------------CCEEEEEECCCeEEEEEcCCCCCCC
Q 001366          934 ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD---------------------SGTLVTASTDNKLKLWDLKRTSHTG  992 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~---------------------~~~L~Sgs~Dg~I~vWDl~~~~~~~  992 (1092)
                      .|+.|++||+++.. ....+.+|...|.+++|++                     +.+|++|+.|++|++||++      
T Consensus       254 ~D~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~------  326 (410)
T 1vyh_C          254 NDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS------  326 (410)
T ss_dssp             TTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT------
T ss_pred             CCCeEEEEECCCCc-eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC------
Confidence            99999999999875 4567889999999999985                     5689999999999999998      


Q ss_pred             CCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC
Q 001366          993 PSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR 1072 (1092)
Q Consensus       993 ~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp 1072 (1092)
                        .+.++.++.+|...|++++|+|+|.+|++|+.|+.|++||...++.+..+              .+|...|++++|+|
T Consensus       327 --~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~--------------~~h~~~v~~l~~~~  390 (410)
T 1vyh_C          327 --TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL--------------NAHEHFVTSLDFHK  390 (410)
T ss_dssp             --TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE--------------ECCSSCEEEEEECS
T ss_pred             --CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE--------------cCCCCcEEEEEEcC
Confidence              46788899999999999999999999999999999999999887766554              36788999999999


Q ss_pred             CCCEEEEEecCCeEEEEEc
Q 001366         1073 RSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1073 d~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++.+|++|+.||.|+||++
T Consensus       391 ~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          391 TAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSSCEEEEETTSEEEEEC-
T ss_pred             CCCEEEEEeCCCcEEEEeC
Confidence            9999999999999999985

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=2.4e-43  Score=396.02  Aligned_cols=270  Identities=23%  Similarity=0.300  Sum_probs=193.0

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .||+|+||++..    ...+..+|.|+....+.........++..++...+||||+.+++........... ....+.. 
T Consensus        15 ~G~fg~V~~a~~----~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~-~~~~~~~-   88 (299)
T 4g31_A           15 RGGFGVVFEAKN----KVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKL-QPSSPKV-   88 (299)
T ss_dssp             ECC--EEEEEEE----TTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-----------CE-
T ss_pred             cCCCeEEEEEEE----CCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccc-cccCCCc-
Confidence            348999999975    2235667776553333333334556788899999999999988876543321100 0000000 


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHK--GKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~--~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                        .-..+||||+||+|.++|+..+..  .+...++.|++||++||+|||++||+||||||+||||+.++.+||+|||+|+
T Consensus        89 --~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFGla~  166 (299)
T 4g31_A           89 --YLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVT  166 (299)
T ss_dssp             --EEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCCCC-
T ss_pred             --EEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCccce
Confidence              001489999999999999876542  3445688999999999999999999999999999999999999999999998


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+.........                                                                     
T Consensus       167 ~~~~~~~~~~~---------------------------------------------------------------------  177 (299)
T 4g31_A          167 AMDQDEEEQTV---------------------------------------------------------------------  177 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCCCcccccc---------------------------------------------------------------------
Confidence            76521110000                                                                     


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHHHHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAA  537 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~~~~~  537 (1092)
                                            ..........+..+||++|||||++.+..|+.++|||||||+||||++||.+..+...
T Consensus       178 ----------------------~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~Pf~~~~~~~~  235 (299)
T 4g31_A          178 ----------------------LTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVR  235 (299)
T ss_dssp             ------------------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHSCCSSHHHHHH
T ss_pred             ----------------------ccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHccCCCCccHHHH
Confidence                                  0000001122367899999999999999999999999999999999999988877777


Q ss_pred             HHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          538 AMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       538 ~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      .+..++....|+.+...+|.+.+||.+||++||.+|||+.|||+||||.+.
T Consensus       236 ~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  286 (299)
T 4g31_A          236 TLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDL  286 (299)
T ss_dssp             HHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGCCC
T ss_pred             HHHHHhcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCCC
Confidence            777777777777777778889999999999999999999999999999865

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=6.2e-43  Score=397.60  Aligned_cols=246  Identities=17%  Similarity=0.203  Sum_probs=195.1

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      -..|++|+||++..    ...++.+|.|+..-.. ........++..++...+||||+.+++....+...++        
T Consensus        82 iG~G~fG~V~~a~~----~~tg~~vAiK~i~~~~-~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~i--------  148 (346)
T 4fih_A           82 IGEGSTGIVCIATV----RSSGKLVAVKKMDLRK-QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWV--------  148 (346)
T ss_dssp             EEECSSCEEEEEEE----TTTCCEEEEEEEEGGG-CSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEE--------
T ss_pred             eecCcCeEEEEEEE----CCCCCEEEEEEEecCc-hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE--------
Confidence            44568999999986    3346677776653222 2223445678888999999999999888776655553        


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                              +||||+||+|.++|...  .+++.+++.|++||+.||+|||++|||||||||+||||+.+|.+||+|||+++
T Consensus       149 --------vmEy~~gg~L~~~l~~~--~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~  218 (346)
T 4fih_A          149 --------VMEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA  218 (346)
T ss_dssp             --------EECCCTTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             --------EEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCce
Confidence                    89999999999999764  47888999999999999999999999999999999999999999999999998


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+...                                                                           
T Consensus       219 ~~~~~---------------------------------------------------------------------------  223 (346)
T 4fih_A          219 QVSKE---------------------------------------------------------------------------  223 (346)
T ss_dssp             ECCSS---------------------------------------------------------------------------
T ss_pred             ecCCC---------------------------------------------------------------------------
Confidence            75410                                                                           


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                  ....++.+||++|||||++.+..|+.++|||||||+||||++|   |.+...
T Consensus       224 ----------------------------~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~  275 (346)
T 4fih_A          224 ----------------------------VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP  275 (346)
T ss_dssp             ----------------------------SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             ----------------------------CCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH
Confidence                                        0112267899999999999999999999999999999999986   554443


Q ss_pred             HHHHHHhccccCC--CCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          535 LAAAMSDLRDRIL--PPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       535 ~~~~~~~~~~~~~--p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      .... ..+.....  .+.+...++++.+||.+||.+||.+|||+.|+|+||||.+...
T Consensus       276 ~~~~-~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~~  332 (346)
T 4fih_A          276 LKAM-KMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGP  332 (346)
T ss_dssp             HHHH-HHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCC
T ss_pred             HHHH-HHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhcCCCC
Confidence            3333 33332221  2334456899999999999999999999999999999987543

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=5.8e-43  Score=398.44  Aligned_cols=251  Identities=18%  Similarity=0.188  Sum_probs=197.3

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.++  |+|+||++..    ...++.+|.|+..-.... .......++..++...+||||+.+++....+...++ 
T Consensus        26 Y~~~~~lG~G~fg~V~~a~~----~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yi-  100 (350)
T 4b9d_A           26 YVRLQKIGEGSFGKAILVKS----TEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYI-  100 (350)
T ss_dssp             EEEEEEC------CEEEEEE----TTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE-
T ss_pred             eEEeEEEecCCCeEEEEEEE----CCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEE-
Confidence            55555554  7999999975    233667777765332222 223445678888999999999999888776655553 


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     +||||+||+|.++|... +..+++.+++.|++||+.||+|||++|||||||||+||||+.+|.+|
T Consensus       101 ---------------VmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vK  165 (350)
T 4b9d_A          101 ---------------VMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQ  165 (350)
T ss_dssp             ---------------EEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEE
T ss_pred             ---------------EEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEE
Confidence                           89999999999999754 44578889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++.+....                                                                  
T Consensus       166 l~DFGla~~~~~~~------------------------------------------------------------------  179 (350)
T 4b9d_A          166 LGDFGIARVLNSTV------------------------------------------------------------------  179 (350)
T ss_dssp             ECSTTEESCCCHHH------------------------------------------------------------------
T ss_pred             EcccccceeecCCc------------------------------------------------------------------
Confidence            99999998754100                                                                  


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ...+..+||++|||||++.+..|+.++|||||||+||||+++ 
T Consensus       180 -------------------------------------~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~  222 (350)
T 4b9d_A          180 -------------------------------------ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLK  222 (350)
T ss_dssp             -------------------------------------HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence                                                 011256899999999999999999999999999999999985 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                        |.+..........+. ...|+.....++++.+||.+||++||.+|||+.|+|+||||...
T Consensus       223 ~PF~~~~~~~~~~~i~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~  283 (350)
T 4b9d_A          223 HAFEAGSMKNLVLKIIS-GSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKR  283 (350)
T ss_dssp             CSCCCSSHHHHHHHHHH-TCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTT
T ss_pred             CCCCCcCHHHHHHHHHc-CCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCHHhhcC
Confidence              666555444444443 34455556678999999999999999999999999999999753

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-39  Score=365.97  Aligned_cols=287  Identities=18%  Similarity=0.269  Sum_probs=255.8

Q ss_pred             eecCCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEEC
Q 001366          774 EFNNSANVICSISFDRD----EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADY  849 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspd----g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~  849 (1092)
                      .+.+|.+.|++++|+|+    +.+||||+.|++|+||++....     ........+|...|.+++|+++ +.++++++.
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~-----~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~  100 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER-----LDLQWSLEGHQLGVVSVDISHT-LPIAASSSL  100 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECSS-SSEEEEEET
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC-----eeeeeeeccCCCCEEEEEECCC-CCEEEEEeC
Confidence            45689999999999974    6799999999999999986411     1122235679999999999998 889999999


Q ss_pred             CCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeE
Q 001366          850 DGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHL  928 (1092)
Q Consensus       850 DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~  928 (1092)
                      |++|++||+.+++.+..+..|...+++++|+| ++.+|++|+.|+.|++||+++++....+. +...|.+++|+|++. +
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~  178 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK-Y  178 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS-E
T ss_pred             CCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC-E
Confidence            99999999999999999999999999999999 89999999999999999999999888877 466799999999995 9


Q ss_pred             EEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCC
Q 001366          929 LAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTN 1007 (1092)
Q Consensus       929 latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~ 1007 (1092)
                      |++|+.|+.|++||+++++ .+..+.+|...|.+++|+ ++.+|++|+.|++|++||++        ...+..++.+|..
T Consensus       179 lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~--------~~~~~~~~~~h~~  249 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ--------HANLAGTLSGHAS  249 (321)
T ss_dssp             EEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT--------TCCEEEEECCCSS
T ss_pred             EEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC--------CcceeEEEcCCCC
Confidence            9999999999999999875 467889999999999999 66789999999999999998        3567788999999


Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEE
Q 001366         1008 EKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIK 1087 (1092)
Q Consensus      1008 ~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~ 1087 (1092)
                      .|++++|+|++.+|++|+.|++|+|||+.+++++..+              .+|...|++++|+|++.+|++++.||.|+
T Consensus       250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~--------------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~  315 (321)
T 3ow8_A          250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF--------------FDHQDQVWGVKYNGNGSKIVSVGDDQEIH  315 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------------CCCSSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE--------------cCCCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            9999999999999999999999999999988877654              35788999999999999999999999999


Q ss_pred             EEEc
Q 001366         1088 VLQM 1091 (1092)
Q Consensus      1088 vW~l 1091 (1092)
                      ||++
T Consensus       316 vwd~  319 (321)
T 3ow8_A          316 IYDC  319 (321)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9985

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=4.9e-42  Score=399.63  Aligned_cols=247  Identities=16%  Similarity=0.164  Sum_probs=195.7

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      -..|++|+||++..    ...++.+|.|+..-.. ........++..++...+||||+.+++....+...+         
T Consensus       159 iG~G~fG~V~~a~~----~~tg~~vAiK~i~~~~-~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~---------  224 (423)
T 4fie_A          159 IGEGSTGIVCIATV----RSSGKLVAVKKMDLRK-QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELW---------  224 (423)
T ss_dssp             EEECSSCEEEEEEE----TTTCCEEEEEEEESTT-CSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEE---------
T ss_pred             eccCcCcEEEEEEE----CCCCCEEEEEEEeccc-hhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEE---------
Confidence            44558999999986    3346677776653222 223344567888899999999999988877655555         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++||||+||+|.++|+..  .+++.++..|++||+.||+|||++|||||||||+||||+.+|.+||+|||+++
T Consensus       225 -------iVmEy~~gG~L~~~i~~~--~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~  295 (423)
T 4fie_A          225 -------VVMEFLEGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA  295 (423)
T ss_dssp             -------EEEECCTTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCE
T ss_pred             -------EEEeCCCCCcHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccce
Confidence                   389999999999999765  47888999999999999999999999999999999999999999999999998


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+...                                                                           
T Consensus       296 ~~~~~---------------------------------------------------------------------------  300 (423)
T 4fie_A          296 QVSKE---------------------------------------------------------------------------  300 (423)
T ss_dssp             ECCSS---------------------------------------------------------------------------
T ss_pred             ECCCC---------------------------------------------------------------------------
Confidence            75410                                                                           


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                  ....++.+||++|||||++.+..|+.++|||||||+||||++|   |.+...
T Consensus       301 ----------------------------~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~  352 (423)
T 4fie_A          301 ----------------------------VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP  352 (423)
T ss_dssp             ----------------------------CCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             ----------------------------CccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH
Confidence                                        0012267899999999999999999999999999999999986   554444


Q ss_pred             HHHHHHhccccC-CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          535 LAAAMSDLRDRI-LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       535 ~~~~~~~~~~~~-~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      ............ ..+.+...++.+.+||.+||.+||.+|||+.|||+||||.....
T Consensus       353 ~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~~~  409 (423)
T 4fie_A          353 LKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGP  409 (423)
T ss_dssp             HHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCC
T ss_pred             HHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHHhcCCCC
Confidence            333332222211 12334567899999999999999999999999999999987543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-38  Score=357.53  Aligned_cols=286  Identities=21%  Similarity=0.340  Sum_probs=248.6

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .|.+|.+.|++++|+|++++||+|+.|++|+|||+.+.       ........|..+|.+++|+|+ +++|++|+.|++|
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~i   79 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-------VEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRI   79 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------ceeEEeeccCCcEEEEEEeCC-CCEEEEECCCCEE
Confidence            36689999999999999999999999999999998752       222344568899999999998 8999999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCcee-eeEe-cCCceEEEEEccCCCeEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSL-ATIK-NIANVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l-~~l~-~~~~V~sl~fsp~~~~~lat  931 (1092)
                      ++||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||++++..+ ..+. |...|.+++|+|.+..+|++
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s  158 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence            9999999999999999999999999999 8899999999999999999987544 4555 67789999999965569999


Q ss_pred             EECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc---CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCC
Q 001366          932 GSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL---DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNE 1008 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs---~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~ 1008 (1092)
                      |+.|+.|++||+++.........+|...|..+.|+   ++.+|++|+.|++|++||++        .+.++.++.+|...
T Consensus       159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~--------~~~~~~~~~~h~~~  230 (304)
T 2ynn_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------TKSCVATLEGHMSN  230 (304)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT--------TTEEEEEEECCSSC
T ss_pred             EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC--------CCccceeeCCCCCC
Confidence            99999999999998776666666788899999997   35689999999999999998        46788999999999


Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCC--EEEEEecCCeE
Q 001366         1009 KNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD--MVVAANSSGCI 1086 (1092)
Q Consensus      1009 V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~--~Lasgs~DG~V 1086 (1092)
                      |.+++|+|++.+|++|+.|++|++||..+++.+..+.              .|...|++++|+|++.  +|++|+.|| +
T Consensus       231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~asg~~~g-~  295 (304)
T 2ynn_A          231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN--------------VGLERSWCIATHPTGRKNYIASGFDNG-F  295 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--------------CSSSSEEEEEECTTCGGGCEEEEETTE-E
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc--------------CCCccEEEEEECCCCCceEEEEecCCc-e
Confidence            9999999999999999999999999999888776653              4567899999999875  577776555 5


Q ss_pred             EEEEc
Q 001366         1087 KVLQM 1091 (1092)
Q Consensus      1087 ~vW~l 1091 (1092)
                      .+|++
T Consensus       296 ~~~~~  300 (304)
T 2ynn_A          296 TVLSL  300 (304)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            56654

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=3.1e-42  Score=384.14  Aligned_cols=251  Identities=14%  Similarity=0.097  Sum_probs=190.2

Q ss_pred             HHHhhhccccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCcc
Q 001366          214 FFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGAR  292 (1092)
Q Consensus       214 ~~~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (1092)
                      |..+-..||+|+||+|...    ..+..+|.|+........ ....-.++..++...+||||+.+++.........    
T Consensus        30 ~~~~iG~G~fg~Vy~a~~~----~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~----  101 (290)
T 3fpq_A           30 FDIEIGRGSFKTVYKGLDT----ETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGK----  101 (290)
T ss_dssp             EEEEEEECSSEEEEEEEET----TTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTE----
T ss_pred             eeeEEecCcCcEEEEEEEC----CCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCC----
Confidence            3335667799999999762    235566665543322222 2334457788899999999999877643211000    


Q ss_pred             CCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcC--ccccCCCCCCeEEc-cCCcEE
Q 001366          293 TGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQG--VTFLDLKPSSFKLL-QSNQVK  369 (1092)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~g--IvHrDLKP~Nill~-~~~~vk  369 (1092)
                       .  ..     ..+||||+||+|.++|++.+ .+++.+++.|++||+.||+|||++|  ||||||||+||||+ .++.+|
T Consensus       102 -~--~~-----~lvmEy~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vK  172 (290)
T 3fpq_A          102 -K--CI-----VLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVK  172 (290)
T ss_dssp             -E--EE-----EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEE
T ss_pred             -c--EE-----EEEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEE
Confidence             0  00     13899999999999998764 5777799999999999999999999  99999999999997 478999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+|+....                                                                    
T Consensus       173 l~DFGla~~~~~--------------------------------------------------------------------  184 (290)
T 3fpq_A          173 IGDLGLATLKRA--------------------------------------------------------------------  184 (290)
T ss_dssp             ECCTTGGGGCCT--------------------------------------------------------------------
T ss_pred             EEeCcCCEeCCC--------------------------------------------------------------------
Confidence            999999975220                                                                    


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ...++.+||++|||||++.+ .|+.++|||||||+||||+++ 
T Consensus       185 -------------------------------------~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~  226 (290)
T 3fpq_A          185 -------------------------------------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSE  226 (290)
T ss_dssp             -------------------------------------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCC
Confidence                                                 00125689999999999875 699999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCC-CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFL-SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                        |.........+..+.....|+.+. ..++++.+||.+||++||.+|||++|+|+||||.+
T Consensus       227 ~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~  288 (290)
T 3fpq_A          227 YPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             CTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             CCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCccccC
Confidence              544444555555665555554433 45688999999999999999999999999999975

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=2.1e-42  Score=387.65  Aligned_cols=252  Identities=15%  Similarity=0.130  Sum_probs=197.6

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.++  |+|+||++..    ...++.+|.|+..-..  .........++..++...+||||+.+++....+...+
T Consensus        33 dy~i~~~lG~G~fg~V~~a~~----~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~y  108 (311)
T 4aw0_A           33 DFKFGKILGEGSFSTVVLARE----LATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLY  108 (311)
T ss_dssp             GEEEEEEEEEETTEEEEEEEE----TTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             ccEEEEEEecccCeEEEEEEE----CCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE
Confidence            466666665  7999999986    3346677777653211  1122344567788899999999999988877655555


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                      +                +||||+||+|.++|+..+ .+++.+++.|++||+.||+|||++||+||||||+||||+.++.+
T Consensus       109 i----------------vmEy~~gG~L~~~i~~~~-~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~v  171 (311)
T 4aw0_A          109 F----------------GLSYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHI  171 (311)
T ss_dssp             E----------------EECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCE
T ss_pred             E----------------EEecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCE
Confidence            3                899999999999998765 47777999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+|+.+....                                                                 
T Consensus       172 Kl~DFGla~~~~~~~-----------------------------------------------------------------  186 (311)
T 4aw0_A          172 QITDFGTAKVLSPES-----------------------------------------------------------------  186 (311)
T ss_dssp             EECCCTTCEECCTTT-----------------------------------------------------------------
T ss_pred             EEEEcCCceecCCCC-----------------------------------------------------------------
Confidence            999999998754100                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                          ......+.+||++|||||++.+..|+.++|||||||+||||++|
T Consensus       187 ------------------------------------~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G  230 (311)
T 4aw0_A          187 ------------------------------------KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG  230 (311)
T ss_dssp             ------------------------------------TCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------CcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                                00112267899999999999999999999999999999999985


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHH------Hhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTRE------ILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e------iL~~~~~~~~  588 (1092)
                         |.+..........+......|  ...++++.+||.+||.+||.+|||+.|      |++||||.+.
T Consensus       231 ~~PF~~~~~~~~~~~i~~~~~~~p--~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~i  297 (311)
T 4aw0_A          231 LPPFRAGNEGLIFAKIIKLEYDFP--EKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESV  297 (311)
T ss_dssp             SCSSCCSSHHHHHHHHHHTCCCCC--TTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTC
T ss_pred             CCCCCCCCHHHHHHHHHcCCCCCC--cccCHHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCCC
Confidence               665554444444444332222  245889999999999999999999987      5889999765

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=3.1e-42  Score=386.07  Aligned_cols=254  Identities=19%  Similarity=0.225  Sum_probs=192.0

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      ++|.+.+.++  |+|+||++..... ...++.+|.|+....... .+.....++..++...+||||+.+++....+...+
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~-~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  102 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISG-SDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLY  102 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSS-TTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccC-CCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE
Confidence            4677777665  7999999864210 122455666665322211 12223455777888999999999988877655555


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                      +                +||||+||+|.++|+..+ .+++.+++.|++||+.||+|||++||+||||||+|||++.+|.+
T Consensus       103 i----------------vmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~v  165 (304)
T 3ubd_A          103 L----------------ILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHI  165 (304)
T ss_dssp             E----------------EECCCTTCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCE
T ss_pred             E----------------EEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCE
Confidence            3                899999999999998765 47777999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+|+...+..                                                                 
T Consensus       166 Kl~DFGla~~~~~~~-----------------------------------------------------------------  180 (304)
T 3ubd_A          166 KLTDFGLSKESIDHE-----------------------------------------------------------------  180 (304)
T ss_dssp             EEESSEEEEC----------------------------------------------------------------------
T ss_pred             EecccccceeccCCC-----------------------------------------------------------------
Confidence            999999998643100                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                            ....+.+||++|||||++.+..|+.++|||||||+||||++|
T Consensus       181 --------------------------------------~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG  222 (304)
T 3ubd_A          181 --------------------------------------KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG  222 (304)
T ss_dssp             --------------------------------------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhC
Confidence                                                  011256899999999999999999999999999999999985


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH-----HHHhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT-----REILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa-----~eiL~~~~~~~~  588 (1092)
                         |.+..........++.....|  ...++++.+||.+||++||.+|||+     +||++||||.+.
T Consensus       223 ~~PF~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~i  288 (304)
T 3ubd_A          223 TLPFQGKDRKETMTMILKAKLGMP--QFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTI  288 (304)
T ss_dssp             SCSSCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTC
T ss_pred             CCCCCCcCHHHHHHHHHcCCCCCC--CcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCccccCC
Confidence               665554444444444332222  3458999999999999999999985     799999999874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.1e-38  Score=358.44  Aligned_cols=283  Identities=16%  Similarity=0.234  Sum_probs=248.1

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|...|++++|+|++++|++|+.|++|+|||+...       ........|...|.+++|+|+ +.+|++|+.|++|
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~-------~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v  121 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-------NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNIC  121 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-------CEEEEEECSSSCEEEEEECTT-SSEEEEEETTCEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-------CcceEeecCCccEEEEEECCC-CCEEEEEeCCCeE
Confidence            46799999999999999999999999999999998652       122334568889999999998 8999999999999


Q ss_pred             EEEECCCC----ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeE
Q 001366          854 KLWDACTG----QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHL  928 (1092)
Q Consensus       854 ~IWD~~tg----~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~  928 (1092)
                      ++||+.++    .....+.+|...|.++.|++ + ..+++++.|++|++||+++++++.++. |...|.+++|+|++. +
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~  198 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-L  198 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-T-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-E
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECC-C-CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-E
Confidence            99999875    35677889999999999998 4 459999999999999999999998887 678899999999985 9


Q ss_pred             EEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc--CC
Q 001366          929 LAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS--GH 1005 (1092)
Q Consensus       929 latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~--~h 1005 (1092)
                      |++|+.|+.|++||++++. ....+.+|...|.+++|+ ++.+|++|+.|++|++||++.        ...+..+.  .+
T Consensus       199 l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~--------~~~~~~~~~~~~  269 (340)
T 1got_B          199 FVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA--------DQELMTYSHDNI  269 (340)
T ss_dssp             EEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------TEEEEEECCTTC
T ss_pred             EEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC--------CcEEEEEccCCc
Confidence            9999999999999999875 467889999999999999 677899999999999999983        34444544  23


Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCe
Q 001366         1006 TNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGC 1085 (1092)
Q Consensus      1006 ~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~ 1085 (1092)
                      ...|++++|+|+|.+|++|+.|+.|++||...+..+..+              .+|...|++++|+|++.+|+||+.||.
T Consensus       270 ~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--------------~~h~~~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--------------AGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--------------ECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             ccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe--------------ecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence            457999999999999999999999999999887766544              467889999999999999999999999


Q ss_pred             EEEEE
Q 001366         1086 IKVLQ 1090 (1092)
Q Consensus      1086 V~vW~ 1090 (1092)
                      |+||+
T Consensus       336 i~iWd  340 (340)
T 1got_B          336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.2e-39  Score=367.33  Aligned_cols=288  Identities=17%  Similarity=0.239  Sum_probs=237.4

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC----CCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC
Q 001366          776 NNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALF----NDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG  851 (1092)
Q Consensus       776 ~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~----~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg  851 (1092)
                      ..|...|.+++|+|||++|++++ |+++++||.....    ..............+...|.+++|+|+  ..|++|+.||
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~l~~~s~dg  103 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE--RGILVASDSG  103 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT--TEEEEEETTS
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC--CeEEEEECCC
Confidence            35677899999999999999887 7788888732100    000111122334556788999999996  5788999999


Q ss_pred             cEEEEECCCCceEEE----eeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCC
Q 001366          852 VVKLWDACTGQTVSH----YIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSS  926 (1092)
Q Consensus       852 tV~IWD~~tg~~i~~----l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~  926 (1092)
                      +|+|||+.+++.+..    +.+|...|++|+|+| ++++|++|+.|++|++||+++++++.++. |...|++++|+|++.
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~  182 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD  182 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC
Confidence            999999999875433    448999999999999 89999999999999999999999999988 678999999999987


Q ss_pred             eEEEEEECCCeEEEEEcCCCCcceEEe--cCCCCCeEEEEEc--CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEE
Q 001366          927 HLLAFGSADYRTYCYDLRNARAPWCVL--AGHEKAVSYVKFL--DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTF 1002 (1092)
Q Consensus       927 ~~latgs~Dg~I~vwDlr~~~~~~~~l--~~H~~~V~~v~fs--~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l 1002 (1092)
                      .+|++|+.|+.|++||+++++. ...+  ..|...+.+++|+  ++.+|++|+.||+|+|||++        .+.++.++
T Consensus       183 ~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~--------~~~~~~~~  253 (344)
T 4gqb_B          183 SVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK--------STSCVLSS  253 (344)
T ss_dssp             TEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC--------C--CCEEE
T ss_pred             Cceeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC--------CCcEEEEE
Confidence            7999999999999999998764 3443  3566789999998  34578999999999999998        45678899


Q ss_pred             cCCCCCeEEEEEecCC-CEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCC-EEEEE
Q 001366         1003 SGHTNEKNFVGLSTAD-GYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD-MVVAA 1080 (1092)
Q Consensus      1003 ~~h~~~V~~v~~spdg-~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~-~Lasg 1080 (1092)
                      .+|...|++++|+|++ .+||+||.|++|+|||...++.+.               ..+|...|++|+|+|++. +|+||
T Consensus       254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~---------------~~~H~~~V~~v~~sp~~~~llas~  318 (344)
T 4gqb_B          254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR---------------SQAHRDFVRDATWSPLNHSLLTTV  318 (344)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE---------------ECCCSSCEEEEEECSSSTTEEEEE
T ss_pred             cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE---------------EcCCCCCEEEEEEeCCCCeEEEEE
Confidence            9999999999999998 589999999999999998776432               246889999999999886 67799


Q ss_pred             ecCCeEEEEEc
Q 001366         1081 NSSGCIKVLQM 1091 (1092)
Q Consensus      1081 s~DG~V~vW~l 1091 (1092)
                      |.||.|++|++
T Consensus       319 s~D~~v~~w~v  329 (344)
T 4gqb_B          319 GWDHQVVHHVV  329 (344)
T ss_dssp             ETTSCEEEEEC
T ss_pred             cCCCeEEEEEC
Confidence            99999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.1e-39  Score=375.18  Aligned_cols=292  Identities=14%  Similarity=0.231  Sum_probs=252.2

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .|.+|...|++++|+|++++||+|+.|++|+|||+...       ........|...|.+++|+|+ +.+|++|+.|++|
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-------~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v  132 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS-------QKTHAIKLHCPWVMECAFAPN-GQSVACGGLDSAC  132 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-------EEEEEEECCCTTCCCCEECTT-SSEEEECCSSSCC
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------ccceEEecCCCCEEEEEECCC-CCEEEEeeCCCcE
Confidence            46799999999999999999999999999999998651       223345678999999999998 9999999999999


Q ss_pred             EEEECCCCc-------eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe------cCCceEEEE
Q 001366          854 KLWDACTGQ-------TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK------NIANVCCVQ  920 (1092)
Q Consensus       854 ~IWD~~tg~-------~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~------~~~~V~sl~  920 (1092)
                      +|||+.+..       ....+.+|...|.++.|.|.++..|++|+.|++|++||+++++++..+.      |...|.+++
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence            999987532       3456789999999999999667789999999999999999999888773      567899999


Q ss_pred             EccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCcee
Q 001366          921 FSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACS  999 (1092)
Q Consensus       921 fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~  999 (1092)
                      |+|.+..+|++|+.|+.|++||++.....+..+.+|...|.+++|+ ++.+|++|+.|++|++||+++        +.++
T Consensus       213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~--------~~~~  284 (380)
T 3iz6_a          213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT--------GHQL  284 (380)
T ss_dssp             ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT--------TEEE
T ss_pred             eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC--------CcEE
Confidence            9885556999999999999999997666778899999999999999 667899999999999999984        4455


Q ss_pred             EEEcCCC-------CCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC
Q 001366         1000 LTFSGHT-------NEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR 1072 (1092)
Q Consensus      1000 ~~l~~h~-------~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp 1072 (1092)
                      ..+..+.       ..|++++|+|+|.+|++|+.||.|++||...++.+....          ....+|...|++++|+|
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~----------~~~~~h~~~v~~l~~s~  354 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG----------TLQNSHEGRISCLGLSS  354 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC----------CSCSSCCCCCCEEEECS
T ss_pred             EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe----------cccCCCCCceEEEEECC
Confidence            5555432       348999999999999999999999999998887766542          12357889999999999


Q ss_pred             CCCEEEEEecCCeEEEEEc
Q 001366         1073 RSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1073 d~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++.+|+||+.||.|+||++
T Consensus       355 dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          355 DGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             SSSEEEEECTTSCEEEEEC
T ss_pred             CCCEEEEeeCCCCEEEEec
Confidence            9999999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.8e-38  Score=388.65  Aligned_cols=334  Identities=19%  Similarity=0.237  Sum_probs=263.1

Q ss_pred             hhhccchhhhhhccccccCCCC---cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001366          725 LLRDRENLFLAQQDQEIQNPTD---RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSK  801 (1092)
Q Consensus       725 ~l~~~~~~~~~~~~~~~~~~~~---~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~  801 (1092)
                      .+.+|...+..+.+    +|++   .++++.|+++++|+....+...     .+.+|...|++++|+|+|++||+|+.|+
T Consensus       142 ~l~gh~~~v~~v~f----~p~~~~~l~s~s~D~~v~lwd~~~~~~~~-----~l~~H~~~V~~v~fspdg~~las~s~D~  212 (611)
T 1nr0_A          142 NLTGQARAMNSVDF----KPSRPFRIISGSDDNTVAIFEGPPFKFKS-----TFGEHTKFVHSVRYNPDGSLFASTGGDG  212 (611)
T ss_dssp             CCCCCSSCEEEEEE----CSSSSCEEEEEETTSCEEEEETTTBEEEE-----EECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eecCCCCCceEEEE----CCCCCeEEEEEeCCCeEEEEECCCCeEee-----eeccccCceEEEEECCCCCEEEEEECCC
Confidence            35566666655543    4543   4588999999999987765543     3668999999999999999999999999


Q ss_pred             cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEE----------------
Q 001366          802 KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVS----------------  865 (1092)
Q Consensus       802 ~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~----------------  865 (1092)
                      +|+|||+.................+|...|.+++|+|+ +.+|+|++.|++|+|||+.+++++.                
T Consensus       213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~  291 (611)
T 1nr0_A          213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII  291 (611)
T ss_dssp             CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred             cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence            99999976421100000000111268999999999998 8999999999999999998876543                


Q ss_pred             ---------------------------EeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeE--------
Q 001366          866 ---------------------------HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI--------  910 (1092)
Q Consensus       866 ---------------------------~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l--------  910 (1092)
                                                 .+.+|...|++++|+| ++.+|++++.|++|++||+.++.+...+        
T Consensus       292 ~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v  370 (611)
T 1nr0_A          292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI  370 (611)
T ss_dssp             ECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred             EcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence                                       3457899999999999 8999999999999999999876543221        


Q ss_pred             ---------------------------------------------------------------------------ecCCc
Q 001366          911 ---------------------------------------------------------------------------KNIAN  915 (1092)
Q Consensus       911 ---------------------------------------------------------------------------~~~~~  915 (1092)
                                                                                                 .+...
T Consensus       371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~  450 (611)
T 1nr0_A          371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN  450 (611)
T ss_dssp             EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred             EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence                                                                                       11234


Q ss_pred             eEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc-eEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCC
Q 001366          916 VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP-WCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGP  993 (1092)
Q Consensus       916 V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~-~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~  993 (1092)
                      +.+++|+|++. +|++|+.|+.|++||+.+.... ... .+|...|.+|+|+ ++.+|++++.|++|++||+.+.     
T Consensus       451 v~~va~spdg~-~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~-----  523 (611)
T 1nr0_A          451 SSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN-----  523 (611)
T ss_dssp             EEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT-----
T ss_pred             ceEEEEeCCCC-EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC-----
Confidence            67899999995 9999999999999999875421 233 6899999999999 7789999999999999999741     


Q ss_pred             CCCceeEE--EcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCC-CCCEEEEEE
Q 001366          994 STNACSLT--FSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDN-GLFVSSVCW 1070 (1092)
Q Consensus       994 ~~~~~~~~--l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h-~~~V~sva~ 1070 (1092)
                        ..+...  +.+|...|++++|+|+|++||+||.|++|++|++..+.....            ....+| ...|++++|
T Consensus       524 --~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~------------~~~~~h~~~~v~~v~f  589 (611)
T 1nr0_A          524 --FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI------------IIKGAHAMSSVNSVIW  589 (611)
T ss_dssp             --TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE------------EETTSSTTSCEEEEEE
T ss_pred             --CceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccc------------hhhccCcccCeeEEEE
Confidence              222222  345999999999999999999999999999999987652210            123467 788999999


Q ss_pred             eCCCCEEEEEecCCeEEEEEc
Q 001366         1071 RRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1071 spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +|++. |++|+.||+|++|++
T Consensus       590 s~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          590 LNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             EETTE-EEEEETTSCEEEEEC
T ss_pred             cCCCE-EEEecCCCCEEEEec
Confidence            99998 999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.2e-38  Score=365.32  Aligned_cols=287  Identities=17%  Similarity=0.227  Sum_probs=237.7

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEEC
Q 001366          776 NNSANVICSISFDRDEDHFAAAGV------SKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADY  849 (1092)
Q Consensus       776 ~~h~~~V~sl~fspdg~~latgg~------D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~  849 (1092)
                      ..|...|++++|+|||++||+|+.      |++|++|+.....   ..........+|...|.+++|+|+ + .+++++.
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~---~~~~~~~~~~~~~~~V~~~~~s~d-~-~~l~~s~  113 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA---PNESLCTAGVQTEAGVTDVAWVSE-K-GILVASD  113 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC------CGGGCSEEEECSSCEEEEEEETT-T-EEEEEET
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC---cceeEecccCCCCCCEEEEEEcCC-C-CEEEEEC
Confidence            479999999999999999999997      6788899875421   112223445678899999999997 4 5667889


Q ss_pred             CCcEEEEECCCCceEE----EeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccC
Q 001366          850 DGVVKLWDACTGQTVS----HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAH  924 (1092)
Q Consensus       850 DgtV~IWD~~tg~~i~----~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~  924 (1092)
                      ||+|+|||+.+++...    ...+|...|++++|+| ++.+|++|+.|++|++||+++++++..+. |...|++++|+|+
T Consensus       114 dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  192 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG  192 (357)
T ss_dssp             TSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence            9999999998886442    3447999999999999 89999999999999999999999999887 6788999999999


Q ss_pred             CCeEEEEEECCCeEEEEEcCCCCcceE-EecCCCCCeEEEEEcC--CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEE
Q 001366          925 SSHLLAFGSADYRTYCYDLRNARAPWC-VLAGHEKAVSYVKFLD--SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLT 1001 (1092)
Q Consensus       925 ~~~~latgs~Dg~I~vwDlr~~~~~~~-~l~~H~~~V~~v~fs~--~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~ 1001 (1092)
                      +..++++++.|+.|++||+++++.... ....|...|.+++|++  +.+|++|+.|+.|++||++        .+.++.+
T Consensus       193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~--------~~~~~~~  264 (357)
T 4g56_B          193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK--------NPDSAQT  264 (357)
T ss_dssp             CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS--------CGGGCEE
T ss_pred             CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC--------CCcEeEE
Confidence            877899999999999999998764322 3456778899999984  4578999999999999998        4567889


Q ss_pred             EcCCCCCeEEEEEecCC-CEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC-CCCEEEE
Q 001366         1002 FSGHTNEKNFVGLSTAD-GYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR-RSDMVVA 1079 (1092)
Q Consensus      1002 l~~h~~~V~~v~~spdg-~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp-d~~~Las 1079 (1092)
                      +.+|...|++++|+|++ .+||+|+.|++|+|||..+++.+..               .+|...|++|+|+| ++.+|+|
T Consensus       265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~---------------~~H~~~V~~vafsP~d~~~l~s  329 (357)
T 4g56_B          265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD---------------LSHRDFVTGVAWSPLDHSKFTT  329 (357)
T ss_dssp             ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE---------------CCCSSCEEEEEECSSSTTEEEE
T ss_pred             EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE---------------CCCCCCEEEEEEeCCCCCEEEE
Confidence            99999999999999987 5899999999999999988765542               25788999999999 8999999


Q ss_pred             EecCCeEEEEEc
Q 001366         1080 ANSSGCIKVLQM 1091 (1092)
Q Consensus      1080 gs~DG~V~vW~l 1091 (1092)
                      |+.||.|++|++
T Consensus       330 ~s~Dg~v~iW~~  341 (357)
T 4g56_B          330 VGWDHKVLHHHL  341 (357)
T ss_dssp             EETTSCEEEEEC
T ss_pred             EcCCCeEEEEEC
Confidence            999999999997

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3.9e-41  Score=372.12  Aligned_cols=246  Identities=20%  Similarity=0.235  Sum_probs=180.1

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccC-c-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-P-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.++  |+|+||++...    ..++.+|.|+...... . .......++..++...+||||+.+++....+...+ 
T Consensus        15 Y~i~~~lG~G~fg~V~~~~~~----~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~-   89 (275)
T 3hyh_A           15 YQIVKTLGEGSFGKVKLAYHT----TTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEII-   89 (275)
T ss_dssp             CEEEEEEEC---CCEEEEECT----TTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE-
T ss_pred             eEEEEEEecCcCeEEEEEEEC----CCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE-
Confidence            55555554  78999999862    3366777776532211 1 12234556778889999999999988766554444 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     .+|||| ||+|.++|...+ .+++.+++.|++||+.||+|||++||+||||||+||||+.++.+|
T Consensus        90 ---------------ivmEy~-~g~L~~~l~~~~-~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vk  152 (275)
T 3hyh_A           90 ---------------MVIEYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVK  152 (275)
T ss_dssp             ---------------EEEECC-CEEHHHHHHHSC-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEE
T ss_pred             ---------------EEEeCC-CCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEE
Confidence                           389999 679999998765 478889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+|+...+.                                                                   
T Consensus       153 l~DFGla~~~~~~-------------------------------------------------------------------  165 (275)
T 3hyh_A          153 IADFGLSNIMTDG-------------------------------------------------------------------  165 (275)
T ss_dssp             ECCSSCC-------------------------------------------------------------------------
T ss_pred             EeecCCCeecCCC-------------------------------------------------------------------
Confidence            9999999764310                                                                   


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHHHHHHcCC
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvll~ell~~  528 (1092)
                                                           ...++.+||++|||||++.+..| +.++|||||||+||||++|
T Consensus       166 -------------------------------------~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg  208 (275)
T 3hyh_A          166 -------------------------------------NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCR  208 (275)
T ss_dssp             ----------------------------------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHC
Confidence                                                 01125689999999999999776 6899999999999999986


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                         |...... ..+..+..... +.....++++.+||.+||++||.+|||++|+|+||||+.
T Consensus       209 ~~PF~~~~~~-~~~~~i~~~~~-~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k~  268 (275)
T 3hyh_A          209 RLPFDDESIP-VLFKNISNGVY-TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKV  268 (275)
T ss_dssp             SCSSCCSSHH-HHHHHHHHTCC-CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHHT
T ss_pred             CCCCCCCCHH-HHHHHHHcCCC-CCCCCCCHHHHHHHHHHccCChhHCcCHHHHHcCccccc
Confidence               6554333 23333332221 112345889999999999999999999999999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=356.22  Aligned_cols=306  Identities=19%  Similarity=0.305  Sum_probs=247.8

Q ss_pred             eecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          774 EFNNSAN-VICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       774 ~l~~h~~-~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      .+.+|.. .|.+++|+|+|++||+|+.|++|+|||+....    .........+|...|.+++|+|+ +++|++|+.|++
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~----~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D~~   84 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS----WICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDAT   84 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTE----EEEEEEECSSCSSCEEEEEECTT-SSEEEEEETTSC
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc----ceeeeeeccccCCcEEEEEECCC-CCEEEEEECCCc
Confidence            4668887 99999999999999999999999999986521    00111223579999999999998 899999999999


Q ss_pred             EEEEECCCC--ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce---eeeEe-cCCceEEEEEccCCC
Q 001366          853 VKLWDACTG--QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS---LATIK-NIANVCCVQFSAHSS  926 (1092)
Q Consensus       853 V~IWD~~tg--~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~---l~~l~-~~~~V~sl~fsp~~~  926 (1092)
                      |+|||+.++  +++..+.+|...|++++|+| ++++|++|+.|++|++||++++..   +..+. |...|.+++|+|++.
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            999999876  46788999999999999999 899999999999999999987643   34444 677899999999985


Q ss_pred             eEEEEEECCCeEEEEEcCCCCc-ceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCC-------CCCc
Q 001366          927 HLLAFGSADYRTYCYDLRNARA-PWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGP-------STNA  997 (1092)
Q Consensus       927 ~~latgs~Dg~I~vwDlr~~~~-~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~-------~~~~  997 (1092)
                       +|++|+.|+.|++||+++... ....+.+|...|.+++|+ ++.+|++|+.|++|+|||.........       ....
T Consensus       164 -~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~  242 (345)
T 3fm0_A          164 -LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK  242 (345)
T ss_dssp             -CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred             -EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence             899999999999999987642 346788999999999999 677999999999999999753221110       1124


Q ss_pred             eeEEEcC-CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCC-C
Q 001366          998 CSLTFSG-HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRS-D 1075 (1092)
Q Consensus       998 ~~~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~-~ 1075 (1092)
                      ++.++.+ |...|++++|+|++.+|++++.|+.|++|+...........+.     .......+|...|++|+|+|++ .
T Consensus       243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~-----~~~~~~~~h~~~V~~v~~~p~~~~  317 (345)
T 3fm0_A          243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS-----LTAHLHQAHSQDVNCVAWNPKEPG  317 (345)
T ss_dssp             EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE-----EEEEETTSSSSCEEEEEECSSSTT
T ss_pred             eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE-----EEeeecccccCcEeEeEEeCCCce
Confidence            4556665 8899999999999999999999999999997654311100000     0001235788999999999998 5


Q ss_pred             EEEEEecCCeEEEEEc
Q 001366         1076 MVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1076 ~Lasgs~DG~V~vW~l 1091 (1092)
                      +||||+.||.|++|++
T Consensus       318 ~laS~s~Dg~v~~W~~  333 (345)
T 3fm0_A          318 LLASCSDDGEVAFWKY  333 (345)
T ss_dssp             EEEEEETTSCEEEEEE
T ss_pred             EEEEcCCCCcEEEEEe
Confidence            9999999999999996

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.2e-41  Score=386.00  Aligned_cols=248  Identities=16%  Similarity=0.086  Sum_probs=185.3

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      -..+|+|+||++..    ...+..+|.|+..-.      ....++..++...+||||+.+++....+...+         
T Consensus        66 lG~G~fG~Vy~a~~----~~~g~~vAiK~i~~~------~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~---------  126 (336)
T 4g3f_A           66 VGRGSFGEVHRMKD----KQTGFQCAVKKVRLE------VFRVEELVACAGLSSPRIVPLYGAVREGPWVN---------  126 (336)
T ss_dssp             EEEETTEEEEEEEE----TTTCCEEEEEEEETT------TCCTHHHHTTTTCCCTTBCCEEEEEEETTEEE---------
T ss_pred             eccCCCeEEEEEEE----CCCCCEEEEEEECHH------HhHHHHHHHHHhCCCCCCCcEEEEEEECCEEE---------
Confidence            34568999999985    234566777665221      22345777888999999999988766554444         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC-cEEEeccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN-QVKYIGPIIQ  376 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~-~vkl~Dfg~~  376 (1092)
                             ++||||+||+|.++|+..+ .+++.+++.|++||+.||+|||++|||||||||+||||+.+| .+||+|||++
T Consensus       127 -------ivmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla  198 (336)
T 4g3f_A          127 -------IFMELLEGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHA  198 (336)
T ss_dssp             -------EEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTC
T ss_pred             -------EEEeccCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCC
Confidence                   3899999999999998765 477889999999999999999999999999999999999887 6999999999


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.+......                                                                       
T Consensus       199 ~~~~~~~~~-----------------------------------------------------------------------  207 (336)
T 4g3f_A          199 LCLQPDGLG-----------------------------------------------------------------------  207 (336)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             eEccCCCcc-----------------------------------------------------------------------
Confidence            875521100                                                                       


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                 .........+||++|||||++.+..|+.++|||||||+||||++|   |....
T Consensus       208 ---------------------------~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~  260 (336)
T 4g3f_A          208 ---------------------------KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF  260 (336)
T ss_dssp             ---------------------------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTC
T ss_pred             ---------------------------cceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence                                       000001246899999999999999999999999999999999986   43332


Q ss_pred             HHHHHHHhccccCC-CCCCCCCChhHHHHHHhccccCCCCCCCHHHHh-------------hhhhhhhhhc
Q 001366          534 ALAAAMSDLRDRIL-PPSFLSENPKEAGFCLWQLHPEPLSRPTTREIL-------------QSEVTNEFQE  590 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL-------------~~~~~~~~~~  590 (1092)
                      .............. +......++.+.+||.+||++||.+|||+.||+             +|||+.+.++
T Consensus       261 ~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~~~~  331 (336)
T 4g3f_A          261 RGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEYKE  331 (336)
T ss_dssp             CSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSSCCC
T ss_pred             HHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhccCCCcCCCCC
Confidence            22222222222211 122345688999999999999999999999985             5677766543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.2e-37  Score=349.35  Aligned_cols=297  Identities=18%  Similarity=0.273  Sum_probs=248.3

Q ss_pred             eeecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC
Q 001366          773 GEFNNSANVICSISFDRDE-DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG  851 (1092)
Q Consensus       773 ~~l~~h~~~V~sl~fspdg-~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg  851 (1092)
                      ..|.+|...|++++|+|++ ++|++|+.|++|++|++.....  ..........+|...|.+++|+|+ +.+|++|+.|+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~   87 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ--KFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDK   87 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT--EEEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc--cccccceEEeCCcccEEEEEECCC-CCEEEEEeCCC
Confidence            3578999999999999965 8999999999999999864111  011122345689999999999998 89999999999


Q ss_pred             cEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCC-----
Q 001366          852 VVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHS-----  925 (1092)
Q Consensus       852 tV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~-----  925 (1092)
                      +|+|||+.+++.+..+.+|...|.+++|+| ++.+|++|+.|++|++||++. .++.++. |...|.++.|+|..     
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~  165 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDD  165 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCC
Confidence            999999999999999999999999999999 889999999999999999974 5555554 67889999999853     


Q ss_pred             CeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC
Q 001366          926 SHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG 1004 (1092)
Q Consensus       926 ~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~ 1004 (1092)
                      ..++++|+.|+.|++||+++.+ ....+.+|...|.+++|+ ++.+|++|+.||+|+|||+.        ...++..+..
T Consensus       166 ~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~--------~~~~~~~~~~  236 (319)
T 3frx_A          166 SVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA--------AKKAMYTLSA  236 (319)
T ss_dssp             CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT--------TTEEEEEEEC
T ss_pred             ccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--------CCcEEEEecC
Confidence            2489999999999999999765 456788999999999999 67789999999999999998        4566777765


Q ss_pred             CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCC
Q 001366         1005 HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSG 1084 (1092)
Q Consensus      1005 h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG 1084 (1092)
                      + ..|.+++|+|++.+|++++.+ .|++|+......+......    .  ......|...|.+++|+|+|++|++|+.||
T Consensus       237 ~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~----~--~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          237 Q-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE----F--AGYSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             C-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCC----C--TTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             C-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc----c--cccccCcCcceeEEEECCCCCEEEEeecCc
Confidence            4 679999999999999988755 5999998876655544310    0  011234567799999999999999999999


Q ss_pred             eEEEEEc
Q 001366         1085 CIKVLQM 1091 (1092)
Q Consensus      1085 ~V~vW~l 1091 (1092)
                      .|+||++
T Consensus       309 ~i~vWd~  315 (319)
T 3frx_A          309 VIRVWQV  315 (319)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.1e-37  Score=355.06  Aligned_cols=285  Identities=12%  Similarity=0.201  Sum_probs=247.4

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|...|++++|+|++.+||||+.|++|+|||....       ........|...|.+++|+|+ +.+|++++.|++|
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~-------~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d~~i  130 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT-------NKEHAVTMPCTWVMACAYAPS-GCAIACGGLDNKC  130 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------CEEEEEECSSSCCCEEEECTT-SSEEEEESTTSEE
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------CcceEEecCCCCEEEEEECCC-CCEEEEeeCCCCE
Confidence            46699999999999999999999999999999997642       122234457788999999998 9999999999999


Q ss_pred             EEEECCCC------ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCC-
Q 001366          854 KLWDACTG------QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHS-  925 (1092)
Q Consensus       854 ~IWD~~tg------~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~-  925 (1092)
                      ++|++...      .....+.+|...|.+++|+| ++..|++|+.|++|++||+++++++.++. |...|.+++|+|+. 
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  209 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET  209 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred             EEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence            99998653      34567778999999999999 88899999999999999999999999887 67789999998853 


Q ss_pred             CeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC
Q 001366          926 SHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG 1004 (1092)
Q Consensus       926 ~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~ 1004 (1092)
                      ..+|++|+.|+.|++||+++++ .+..+.+|...|.+++|+ ++..|++|+.|++|++||++.        ...+..+..
T Consensus       210 g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~--------~~~~~~~~~  280 (354)
T 2pbi_B          210 GNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA--------DREVAIYSK  280 (354)
T ss_dssp             CCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------TEEEEEECC
T ss_pred             CCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC--------CcEEEEEcC
Confidence            2599999999999999999876 467889999999999998 677899999999999999983        334444443


Q ss_pred             --CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec
Q 001366         1005 --HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS 1082 (1092)
Q Consensus      1005 --h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~ 1082 (1092)
                        +...+.+++|+|+|.+|++|+.|+.|++||+..+..+..+              .+|...|++++|+|++.+|++|+.
T Consensus       281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l--------------~~h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL--------------FGHENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE--------------CCCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE--------------ECCCCcEEEEEECCCCCEEEEEcC
Confidence              3457899999999999999999999999999888766543              467889999999999999999999


Q ss_pred             CCeEEEEE
Q 001366         1083 SGCIKVLQ 1090 (1092)
Q Consensus      1083 DG~V~vW~ 1090 (1092)
                      ||.|+||+
T Consensus       347 D~~v~vW~  354 (354)
T 2pbi_B          347 DHTLRVWA  354 (354)
T ss_dssp             TSEEEEEC
T ss_pred             CCCEEecC
Confidence            99999995

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.2e-37  Score=349.31  Aligned_cols=305  Identities=18%  Similarity=0.294  Sum_probs=243.6

Q ss_pred             eeecCCCCCEEEEEE-----cC-CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEE
Q 001366          773 GEFNNSANVICSISF-----DR-DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLAS  846 (1092)
Q Consensus       773 ~~l~~h~~~V~sl~f-----sp-dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaS  846 (1092)
                      ..|.+|...|++++|     ++ ++++||+|+.|++|+|||+.................+|...|.+++|+|+ +.+|++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s   93 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-NCFAIS   93 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-TTEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-CCEEEE
Confidence            357799999999999     76 89999999999999999987522111111222345689999999999998 899999


Q ss_pred             EECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeE---ecCCceEEEEEcc
Q 001366          847 ADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI---KNIANVCCVQFSA  923 (1092)
Q Consensus       847 gs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l---~~~~~V~sl~fsp  923 (1092)
                      |+.|++|+|||+.+++.+..+.+|...|++++|+| ++..|++|+.|++|++||+.........   .+...|.+++|+|
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP  172 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence            99999999999999999999999999999999999 8899999999999999999843322222   2567899999999


Q ss_pred             CCC---------eEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCC
Q 001366          924 HSS---------HLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGP  993 (1092)
Q Consensus       924 ~~~---------~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~  993 (1092)
                      ++.         .+|++++.|+.|++||...  .....+.+|...|.+++|+ ++.+|++|+.|++|++||+...     
T Consensus       173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~-----  245 (343)
T 2xzm_R          173 IMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL-----  245 (343)
T ss_dssp             CCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC-----
T ss_pred             ccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC-----
Confidence            862         4899999999999999542  3456788999999999999 6779999999999999999532     


Q ss_pred             CCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCC
Q 001366          994 STNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRR 1073 (1092)
Q Consensus       994 ~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd 1073 (1092)
                        ......+ .+...|++++|+|++.++++| .|+.|++|++.++..+....+.. .+........+|...|.+++|+|+
T Consensus       246 --~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~  320 (343)
T 2xzm_R          246 --TYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEA-EPITKAEGQKGKNPQCTSLAWNAL  320 (343)
T ss_dssp             --SSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCC-CSGGGBTTBCCSCCCEEEEEECSS
T ss_pred             --cccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeec-CcchhhhhhcCCCCceEEEEECCC
Confidence              2223333 245579999999999888755 57789999998776544222110 111111122467888999999999


Q ss_pred             CCEEEEEecCCeEEEEEc
Q 001366         1074 SDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1074 ~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +.+|++|+.||.|++|++
T Consensus       321 g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          321 GKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             SCCEEEEETTSEEEEEEE
T ss_pred             CCeEEEecCCceEEEEEE
Confidence            999999999999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.9e-37  Score=342.94  Aligned_cols=286  Identities=25%  Similarity=0.428  Sum_probs=251.1

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|...|++++|+|++++||+|+.|+.|+||++...       .......+|...|.+++|+|+ +++|++|+.||+|
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i   89 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTL   89 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEE
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-------ccchhhccCCCceEEEEEcCC-CCEEEEECCCCEE
Confidence            46799999999999999999999999999999998641       222345578999999999998 8999999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      ++||+.+++++..+.+|...|.+++|+| ++.+|++|+.|++|++||+++++++..+. +...|.+++|+|++. +|++|
T Consensus        90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~  167 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSS  167 (312)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC-EEEEE
Confidence            9999999999999999999999999999 88999999999999999999999988887 567899999999985 89999


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~ 1011 (1092)
                      +.|+.|++||+++.+........|...+.+++|+ ++.+|++++.|+.|++||++        .+.++..+.+|...+.+
T Consensus       168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~--------~~~~~~~~~~~~~~~~~  239 (312)
T 4ery_A          168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS--------KGKCLKTYTGHKNEKYC  239 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT--------TTEEEEEECSSCCSSSC
T ss_pred             eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC--------CCcEEEEEEecCCceEE
Confidence            9999999999998765444456677889999999 67789999999999999998        45677888888776543


Q ss_pred             E--EEe-cCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEe--cCCeE
Q 001366         1012 V--GLS-TADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAAN--SSGCI 1086 (1092)
Q Consensus      1012 v--~~s-pdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs--~DG~V 1086 (1092)
                      +  .++ +++.+|++|+.|+.|++||+..++.+..+              .+|...|.+++|+|++.+|++++  .||.|
T Consensus       240 ~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------------~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i  305 (312)
T 4ery_A          240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL--------------QGHTDVVISTACHPTENIIASAALENDKTI  305 (312)
T ss_dssp             CCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE--------------CCCSSCEEEEEECSSSSEEEEEECTTTCCE
T ss_pred             EEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh--------------hccCCcEEEEeecCcCCceEEEEccCCccE
Confidence            3  344 57889999999999999999988776654              46788999999999999999997  69999


Q ss_pred             EEEEc
Q 001366         1087 KVLQM 1091 (1092)
Q Consensus      1087 ~vW~l 1091 (1092)
                      ++|+.
T Consensus       306 ~~W~~  310 (312)
T 4ery_A          306 KLWKS  310 (312)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.6e-37  Score=356.23  Aligned_cols=297  Identities=22%  Similarity=0.376  Sum_probs=245.8

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCC-ccccc----------ceeeecCCCCeEEEEEecCCCCEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDS-VDVYY----------PAVEMSNRSKLSCVCWNNYIKNYLA  845 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~-~~~~~----------~~~~~~h~~~V~~v~~sp~~~~~La  845 (1092)
                      .|...|++++|+|+|++||+|+ +++++||++....... .....          ......+...|.+++|+|+ +.+|+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SSEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC-CCEEE
Confidence            5999999999999999999986 7899999986521100 00000          0000123345999999998 89999


Q ss_pred             EEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCC
Q 001366          846 SADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHS  925 (1092)
Q Consensus       846 Sgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~  925 (1092)
                      +|+.|++|+|||+.+++.+..+.+|...|++++|+| ++..|++|+.|++|++||++++++...+.+...+.+++|+|.+
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  218 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  218 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence            999999999999999999999999999999999999 8899999999999999999999999999888999999999944


Q ss_pred             CeEEEEEECCCeEEEEEcCCCCcceEEe-------cCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCC----C
Q 001366          926 SHLLAFGSADYRTYCYDLRNARAPWCVL-------AGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTG----P  993 (1092)
Q Consensus       926 ~~~latgs~Dg~I~vwDlr~~~~~~~~l-------~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~----~  993 (1092)
                      ..+|++|+.|+.|++||++++.. +..+       .+|...|.+++|+ ++.+|++|+.|++|++||++......    .
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcE-EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence            46999999999999999998753 3333       5799999999999 67789999999999999998543211    1


Q ss_pred             CCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC-
Q 001366          994 STNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR- 1072 (1092)
Q Consensus       994 ~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp- 1072 (1092)
                      ....+...+.+|...|.+++|+|++.+|++|+.|+.|++||..+++++..+              .+|...|.+++|++ 
T Consensus       298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l--------------~~h~~~v~~v~~~~~  363 (393)
T 1erj_A          298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML--------------QGHRNSVISVAVANG  363 (393)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE--------------ECCSSCEEEEEECSS
T ss_pred             CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE--------------CCCCCCEEEEEecCC
Confidence            124567788899999999999999999999999999999999988877654              36788999999986 


Q ss_pred             -----CCCEEEEEecCCeEEEEEc
Q 001366         1073 -----RSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1073 -----d~~~Lasgs~DG~V~vW~l 1091 (1092)
                           ++.+||||+.||.|+||++
T Consensus       364 ~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          364 SSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             CTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             cCcCCCCCEEEEECCCCcEEECcc
Confidence                 6889999999999999986

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=366.14  Aligned_cols=240  Identities=15%  Similarity=0.103  Sum_probs=178.5

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|+|+||+|...+       .+|+|++-...... ....-.++..++...+||||+.++.... +...+         
T Consensus        45 G~G~fG~Vy~~~~~~-------~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~---------  107 (307)
T 3omv_A           45 GSGSFGTVYKGKWHG-------DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLA---------  107 (307)
T ss_dssp             CCCSSSEEEEEESSS-------EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCE---------
T ss_pred             eeCCCcEEEEEEECC-------cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEE---------
Confidence            445899999998732       35555543222222 2334456788899999999998876432 11122         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++||||+||+|.++|......+++.+++.|+.||+.||+|||++|||||||||+||||+.++.+||+|||+|+
T Consensus       108 -------iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~  180 (307)
T 3omv_A          108 -------IVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLAT  180 (307)
T ss_dssp             -------EEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCB
T ss_pred             -------EEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCce
Confidence                   3899999999999998776678999999999999999999999999999999999999999999999999998


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       181 ~~~~~~--------------------------------------------------------------------------  186 (307)
T 3omv_A          181 VKSRWS--------------------------------------------------------------------------  186 (307)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             ecccCC--------------------------------------------------------------------------
Confidence            643100                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC---CCCCccccchhhhHHHHHHcCC---CCc
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG---GVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~---~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                 .....+..+||+.|||||++.+   ++|+.++|||||||+||||+|+   |..
T Consensus       187 ---------------------------~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~  239 (307)
T 3omv_A          187 ---------------------------GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSH  239 (307)
T ss_dssp             ----------------------------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             ---------------------------cceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCC
Confidence                                       0011225689999999999964   4699999999999999999986   544


Q ss_pred             HHHHHHHHHhccccCC----CCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          532 ERALAAAMSDLRDRIL----PPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      ..........+.....    +......++.+.+|+.+||+.||.+|||+.||+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L  295 (307)
T 3omv_A          240 INNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSI  295 (307)
T ss_dssp             CCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHH
T ss_pred             CChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            3333333333333222    223345678899999999999999999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-37  Score=347.86  Aligned_cols=296  Identities=19%  Similarity=0.253  Sum_probs=231.5

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceee-ec-CCCCeEEEEEecCCCCEEEEEECCC
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVE-MS-NRSKLSCVCWNNYIKNYLASADYDG  851 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~-~~-h~~~V~~v~~sp~~~~~LaSgs~Dg  851 (1092)
                      .+.+|...|.+++|+|+  +||+|+.|++|+||++....     ....... .+ |...|.+++|+|+ +.+|++|+.|+
T Consensus         9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~-----~~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~   80 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD-----FTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDS   80 (330)
T ss_dssp             EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-----CEEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTS
T ss_pred             eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-----eEEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCC
Confidence            46689999999999987  99999999999999986421     0111112 23 8999999999998 89999999999


Q ss_pred             cEEEEECCC-------CceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC----ceeeeEe-cCCceEEE
Q 001366          852 VVKLWDACT-------GQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK----NSLATIK-NIANVCCV  919 (1092)
Q Consensus       852 tV~IWD~~t-------g~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~----~~l~~l~-~~~~V~sl  919 (1092)
                      +|+|||+..       .+.+..+.+|...|++++|+| ++.+|++|+.|++|++||++..    +++..+. |...|.++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v  159 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV  159 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence            999999853       356778899999999999999 8999999999999999999532    3455565 67889999


Q ss_pred             EEccCCCeEEEEEECCCeEEEEEcCCCC-cceEEecCCCCCeEEEEEcC---CCEEEEEECCCeEEEEEcCCCCCCCCCC
Q 001366          920 QFSAHSSHLLAFGSADYRTYCYDLRNAR-APWCVLAGHEKAVSYVKFLD---SGTLVTASTDNKLKLWDLKRTSHTGPST  995 (1092)
Q Consensus       920 ~fsp~~~~~latgs~Dg~I~vwDlr~~~-~~~~~l~~H~~~V~~v~fs~---~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~  995 (1092)
                      +|+|++. +|++|+.|++|++||+++.. .++..+.+|...|.+++|++   +..|++|+.|++|++||+..........
T Consensus       160 ~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~  238 (330)
T 2hes_X          160 IWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE  238 (330)
T ss_dssp             EECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred             EECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence            9999985 99999999999999998653 35678899999999999984   4579999999999999997432111111


Q ss_pred             CceeEEEcC-CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCC-CEEEEEEeC-
Q 001366          996 NACSLTFSG-HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGL-FVSSVCWRR- 1072 (1092)
Q Consensus       996 ~~~~~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~-~V~sva~sp- 1072 (1092)
                      ..+...+.+ |...|++++|++++ +|++|+.|+.|+||+...+.......           ...+|.. .|++++|+| 
T Consensus       239 ~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~-----------~~~~h~~~~v~~v~~~~~  306 (330)
T 2hes_X          239 WVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAK-----------RALCHGVYEINVVKWLEL  306 (330)
T ss_dssp             EEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEE-----------ESCTTTTSCEEEEEEC--
T ss_pred             eEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEec-----------cccccccceEEEEEEecC
Confidence            134455555 99999999999665 89999999999999976553111110           1135665 899999999 


Q ss_pred             -CCCEEEEEecCCeEEEEEc
Q 001366         1073 -RSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1073 -d~~~Lasgs~DG~V~vW~l 1091 (1092)
                       ++.+||+|+.||.|+||++
T Consensus       307 ~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          307 NGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             ---CCEEEEETTSEEEEEEC
T ss_pred             CCceEEEEecCCCcEEEEEe
Confidence             7899999999999999996

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=377.86  Aligned_cols=264  Identities=14%  Similarity=0.176  Sum_probs=193.6

Q ss_pred             HHHhhhcc--ccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+|  ++|+||++..    ...++.+|.|+..... ...+.....++..++...+||||+.+++.........  
T Consensus        56 Y~~~~~lG~G~fG~V~~a~~----~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~--  129 (398)
T 4b99_A           56 YEIIETIGNGAYGVVSSARR----RLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYG--  129 (398)
T ss_dssp             EEEEEEEEECSSCEEEEEEE----TTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTT--
T ss_pred             eEEEEEEecccCeEEEEEEE----CCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccc--
Confidence            55555554  7899999976    3346777877653222 2333445667888999999999998876543221110  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                       ...-       -.++||||+ |+|.++|...+ .+++.+++.|++||+.||+|||++|||||||||+|||++.++.+|+
T Consensus       130 -~~~~-------~~ivmE~~~-g~L~~~i~~~~-~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki  199 (398)
T 4b99_A          130 -EFKS-------VYVVLDLME-SDLHQIIHSSQ-PLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKI  199 (398)
T ss_dssp             -TCCC-------EEEEEECCS-EEHHHHHTSSS-CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEE
T ss_pred             -cCCE-------EEEEEeCCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEE
Confidence             0000       124899996 67999997765 5788899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.+......                                                                 
T Consensus       200 ~DFGla~~~~~~~~~-----------------------------------------------------------------  214 (398)
T 4b99_A          200 GDFGMARGLCTSPAE-----------------------------------------------------------------  214 (398)
T ss_dssp             CCCTTCBCC-----------------------------------------------------------------------
T ss_pred             eecceeeecccCccc-----------------------------------------------------------------
Confidence            999999875421100                                                                 


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                        .....++.+||++|||||++.+. .|+.++|||||||+||||++| 
T Consensus       215 ----------------------------------~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~  260 (398)
T 4b99_A          215 ----------------------------------HQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARR  260 (398)
T ss_dssp             -----------------------------------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTS
T ss_pred             ----------------------------------cccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCC
Confidence                                              01112367999999999999884 579999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhccccC---------------------CCC--------CCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          529 --FDSERALAAAMSDLRDRI---------------------LPP--------SFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~---------------------~p~--------~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                        |.+.....+.........                     +|+        .++..++.+.+||.+||.+||.+|||+.
T Consensus       261 ~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~  340 (398)
T 4b99_A          261 QLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAA  340 (398)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHH
Confidence              666554444433322111                     111        1335678899999999999999999999


Q ss_pred             HHhhhhhhhhhhccc
Q 001366          578 EILQSEVTNEFQEVC  592 (1092)
Q Consensus       578 eiL~~~~~~~~~~~~  592 (1092)
                      |+|+||||.+..++.
T Consensus       341 e~L~Hp~f~~~~~p~  355 (398)
T 4b99_A          341 AALRHPFLAKYHDPD  355 (398)
T ss_dssp             HHTTSGGGTTTCCGG
T ss_pred             HHhcCHhhCcCCCCc
Confidence            999999999865544

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-36  Score=375.46  Aligned_cols=336  Identities=17%  Similarity=0.198  Sum_probs=266.9

Q ss_pred             hhhhccchhhhhhccccccCCCCc--EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTDR--LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSK  801 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~~--l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~  801 (1092)
                      .++.+|...+.++.    ++|++.  ++++.|+++++|+....+..  + ...+.+|...|.+++|+|+|++||+++.+.
T Consensus        53 ~~~~~h~~~v~~~~----~spdg~~lasg~~d~~v~lWd~~~~~~~--~-~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~  125 (611)
T 1nr0_A           53 EIYTEHSHQTTVAK----TSPSGYYCASGDVHGNVRIWDTTQTTHI--L-KTTIPVFSGPVKDISWDSESKRIAAVGEGR  125 (611)
T ss_dssp             EEECCCSSCEEEEE----ECTTSSEEEEEETTSEEEEEESSSTTCC--E-EEEEECSSSCEEEEEECTTSCEEEEEECCS
T ss_pred             eEecCCCCceEEEE----ECCCCcEEEEEeCCCCEEEeECCCCcce--e-eEeecccCCceEEEEECCCCCEEEEEECCC
Confidence            44667777666554    356664  46779999999997532211  1 124568999999999999999999998763


Q ss_pred             ----cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEE
Q 001366          802 ----KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSV  877 (1092)
Q Consensus       802 ----~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv  877 (1092)
                          +|++||...         ......+|...|.+++|+|+....|++|+.|++|++||..+++++..+.+|...|+++
T Consensus       126 ~~~~~v~~wd~~~---------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v  196 (611)
T 1nr0_A          126 ERFGHVFLFDTGT---------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV  196 (611)
T ss_dssp             SCSEEEEETTTCC---------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEE
T ss_pred             CceeEEEEeeCCC---------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEE
Confidence                688887432         1123457899999999999844579999999999999999999999999999999999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEecCCCceeeeE--------ecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc-
Q 001366          878 DFSQVHPTKLASGSDDCSVKLWNINEKNSLATI--------KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA-  948 (1092)
Q Consensus       878 ~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l--------~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~-  948 (1092)
                      +|+| ++.+|++|+.|++|++||+.+++++..+        .|...|.+++|+|++. +|++|+.|++|++||+++++. 
T Consensus       197 ~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          197 RYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEE
T ss_pred             EECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcee
Confidence            9999 8999999999999999999999988877        3678899999999995 899999999999999987532 


Q ss_pred             -----------------------------------------ceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcC
Q 001366          949 -----------------------------------------PWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLK  986 (1092)
Q Consensus       949 -----------------------------------------~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~  986 (1092)
                                                               ....+.+|...|.+++|+ ++.+|++++.|++|++||+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence                                                     123456899999999999 67899999999999999987


Q ss_pred             CCCCCCCC-----------------------------------------------------------CC-----------
Q 001366          987 RTSHTGPS-----------------------------------------------------------TN-----------  996 (1092)
Q Consensus       987 ~~~~~~~~-----------------------------------------------------------~~-----------  996 (1092)
                      +.......                                                           .+           
T Consensus       355 ~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v  434 (611)
T 1nr0_A          355 TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI  434 (611)
T ss_dssp             TCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEE
T ss_pred             CCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceE
Confidence            54210000                                                           00           


Q ss_pred             -----ceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEe
Q 001366          997 -----ACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWR 1071 (1092)
Q Consensus       997 -----~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~s 1071 (1092)
                           ..+..+ .|...+++++|+|+|++||+|+.|++|++|++..+..... .           . .+|...|++|+|+
T Consensus       435 ~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~-~-----------~-~~h~~~v~~v~fs  500 (611)
T 1nr0_A          435 AIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV-K-----------T-IVHPAEITSVAFS  500 (611)
T ss_dssp             EEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE-E-----------E-EECSSCEEEEEEC
T ss_pred             EEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee-e-----------c-cCCCCceEEEEEC
Confidence                 000111 1455688999999999999999999999999865532111 1           1 3577889999999


Q ss_pred             CCCCEEEEEecCCeEEEEEc
Q 001366         1072 RRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1072 pd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |++++|++++.|+.|++|++
T Consensus       501 pdg~~las~s~d~~v~~w~~  520 (611)
T 1nr0_A          501 NNGAFLVATDQSRKVIPYSV  520 (611)
T ss_dssp             TTSSEEEEEETTSCEEEEEG
T ss_pred             CCCCEEEEEcCCCCEEEEEc
Confidence            99999999999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-36  Score=355.04  Aligned_cols=286  Identities=22%  Similarity=0.326  Sum_probs=249.8

Q ss_pred             chhhhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC
Q 001366          723 NDLLRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS  800 (1092)
Q Consensus       723 ~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D  800 (1092)
                      ...+.+|...+..+.+    +|+.  .++++.|+++++|++...+...     .+.+|...|.+++|+|++++||+|+.|
T Consensus       101 ~~~l~gh~~~V~~~~~----~p~~~~l~s~s~Dg~i~vwd~~~~~~~~-----~l~~h~~~V~~v~~~~~~~~l~sgs~D  171 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIF----HPVFSVMVSASEDATIKVWDYETGDFER-----TLKGHTDSVQDISFDHSGKLLASCSAD  171 (410)
T ss_dssp             SCEEECCSSCEEEEEE----CSSSSEEEEEESSSCEEEEETTTCCCCE-----EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEeecccCCcEEEEEE----cCCCCEEEEEeCCCeEEEEECCCCcEEE-----EEeccCCcEEEEEEcCCCCEEEEEeCC
Confidence            4556778777766544    4544  4578899999999988765443     356899999999999999999999999


Q ss_pred             CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEe
Q 001366          801 KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFS  880 (1092)
Q Consensus       801 ~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fs  880 (1092)
                      ++|+|||+...       .......+|...|.+++|+|+ +++|++|+.|++|++||+.+++++..+.+|...|.++.|+
T Consensus       172 ~~i~iwd~~~~-------~~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  243 (410)
T 1vyh_C          172 MTIKLWDFQGF-------ECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN  243 (410)
T ss_dssp             SCCCEEETTSS-------CEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             CeEEEEeCCCC-------ceeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC
Confidence            99999998652       122234578999999999998 8999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCC-------------------CeEEEEEECCCeEEE
Q 001366          881 QVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHS-------------------SHLLAFGSADYRTYC  940 (1092)
Q Consensus       881 p~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~-------------------~~~latgs~Dg~I~v  940 (1092)
                      | ++.+|++|+.|++|++||++++.+...+. |...|.+++|+|++                   ..+|++|+.|+.|++
T Consensus       244 ~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i  322 (410)
T 1vyh_C          244 Q-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  322 (410)
T ss_dssp             T-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             C-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence            9 89999999999999999999999988886 67789999999963                   248999999999999


Q ss_pred             EEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC
Q 001366          941 YDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG 1019 (1092)
Q Consensus       941 wDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~ 1019 (1092)
                      ||++++. .+..+.+|...|.+++|+ ++.+|++|+.|++|++||+.        .+.++.++.+|...|++++|+|++.
T Consensus       323 wd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~--------~~~~~~~~~~h~~~v~~l~~~~~~~  393 (410)
T 1vyh_C          323 WDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK--------NKRCMKTLNAHEHFVTSLDFHKTAP  393 (410)
T ss_dssp             EETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT--------TSCCCEEEECCSSCEEEEEECSSSS
T ss_pred             EECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--------CCceEEEEcCCCCcEEEEEEcCCCC
Confidence            9999875 467888999999999999 66789999999999999997        4567889999999999999999999


Q ss_pred             EEEEEecCCcEEEEeC
Q 001366         1020 YIACGSESNEVYAYHR 1035 (1092)
Q Consensus      1020 ~lasgs~Dg~I~Iwd~ 1035 (1092)
                      +|++||.|++|+||+.
T Consensus       394 ~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          394 YVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CEEEEETTSEEEEEC-
T ss_pred             EEEEEeCCCcEEEEeC
Confidence            9999999999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.6e-35  Score=336.64  Aligned_cols=287  Identities=19%  Similarity=0.250  Sum_probs=244.5

Q ss_pred             chhhhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC
Q 001366          723 NDLLRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS  800 (1092)
Q Consensus       723 ~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D  800 (1092)
                      ...+++|.+.+.++.+    +|++  .++++.|+++++|+.........     +..|...|.+++|+|++++||+|+.|
T Consensus        48 ~~~l~gH~~~v~~~~~----s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~s~~~d  118 (340)
T 1got_B           48 RRTLRGHLAKIYAMHW----GTDSRLLLSASQDGKLIIWDSYTTNKVHA-----IPLRSSWVMTCAYAPSGNYVACGGLD  118 (340)
T ss_dssp             EEEECCCSSCEEEEEE----CTTSSEEEEEETTTEEEEEETTTCCEEEE-----EECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             heeecCCCCceEEEEE----CCCCCEEEEEeCCCcEEEEECCCCCcceE-----eecCCccEEEEEECCCCCEEEEEeCC
Confidence            4557788777766543    4544  45788999999999877655433     45789999999999999999999999


Q ss_pred             CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEe
Q 001366          801 KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFS  880 (1092)
Q Consensus       801 ~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fs  880 (1092)
                      +.|+||++....   ..........+|...|.++.|+++  ..+++++.|++|++||+.+++.+..+.+|...|++++|+
T Consensus       119 ~~v~iw~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  193 (340)
T 1got_B          119 NICSIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             CEEEEEETTTCS---BSCEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CeEEEEECccCC---CcceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence            999999987521   111223345679999999999985  469999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEec--CCC
Q 001366          881 QVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA--GHE  957 (1092)
Q Consensus       881 p~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~--~H~  957 (1092)
                      | ++.+|++|+.|++|++||++++.++.++. |...|++++|+|++. +|++|+.|+.|++||+++... +..+.  .+.
T Consensus       194 ~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~~  270 (340)
T 1got_B          194 P-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQE-LMTYSHDNII  270 (340)
T ss_dssp             T-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-EEEECCTTCC
T ss_pred             C-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcE-EEEEccCCcc
Confidence            9 88999999999999999999999998887 677899999999985 899999999999999998654 33333  334


Q ss_pred             CCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          958 KAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       958 ~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      ..|.+++|+ ++.+|++|+.|+.|++||+.        ....+..+.+|...|++++|+|+|.+||+||.|++|+|||
T Consensus       271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          271 CGITSVSFSKSGRLLLAGYDDFNCNVWDAL--------KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETT--------TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cceEEEEECCCCCEEEEECCCCeEEEEEcc--------cCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            579999999 67789999999999999998        3566788999999999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-35  Score=360.65  Aligned_cols=299  Identities=25%  Similarity=0.322  Sum_probs=260.9

Q ss_pred             cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeec
Q 001366          747 RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       747 ~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~  826 (1092)
                      .+++..|+.+++|+... +...     .+.+|...|.+++|+|++++|++++.|++|++||...        .......+
T Consensus       277 l~~~~~d~~i~~w~~~~-~~~~-----~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~--------~~~~~~~~  342 (577)
T 2ymu_A          277 IASASDDKTVKLWNRNG-QLLQ-----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------QHLQTLTG  342 (577)
T ss_dssp             EEEEETTSCEEEEETTS-CEEE-----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECC
T ss_pred             EEEEeCCCEEEEEeCCC-cEEE-----EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--------CeeEEEeC
Confidence            45778999999999643 2221     3568999999999999999999999999999999764        12233456


Q ss_pred             CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce
Q 001366          827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS  906 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~  906 (1092)
                      |...|.+++|+|+ +.+|++++.||+|++||. +++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||. +++.
T Consensus       343 ~~~~v~~~~~s~~-g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~  418 (577)
T 2ymu_A          343 HSSSVWGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQL  418 (577)
T ss_dssp             CSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCE
T ss_pred             CCCCEEEEEECCC-CCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCE
Confidence            8899999999998 899999999999999995 6788899999999999999999 8999999999999999996 4666


Q ss_pred             eeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEE
Q 001366          907 LATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWD  984 (1092)
Q Consensus       907 l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWD  984 (1092)
                      +..+. +...|++++|+|++. +|++++.|+.|++||...  ..+..+.+|...|.+++|+ ++.+|++++.|++|++||
T Consensus       419 ~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~  495 (577)
T 2ymu_A          419 LQTLTGHSSSVWGVAFSPDDQ-TIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  495 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             EEEecCCCCCeEEEEECCCCC-EEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc
Confidence            76666 678899999999985 899999999999999743  3467788999999999999 677899999999999999


Q ss_pred             cCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCC
Q 001366          985 LKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLF 1064 (1092)
Q Consensus       985 l~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~ 1064 (1092)
                      ..         +.++..+.+|...|++++|+|+|++||+|+.|+.|++||. .++.+..+              .+|...
T Consensus       496 ~~---------~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~--------------~~h~~~  551 (577)
T 2ymu_A          496 RN---------GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL--------------TGHSSS  551 (577)
T ss_dssp             TT---------SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE--------------ECCSSC
T ss_pred             CC---------CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE--------------cCCCCC
Confidence            64         5678899999999999999999999999999999999995 45555433              468899


Q ss_pred             EEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1065 VSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1065 V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      |++++|+||+++|+|++.||+|++||
T Consensus       552 v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          552 VWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999999999999997

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=8.1e-39  Score=368.71  Aligned_cols=276  Identities=15%  Similarity=0.128  Sum_probs=180.6

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  |++|+||++...-.. ..++.+|.|+.....   ......++...+... .||||+.+++....+...+  
T Consensus        23 Y~i~~~lG~G~fg~Vy~a~~~~~~-~~~~~vAiK~i~~~~---~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~--   96 (361)
T 4f9c_A           23 FKIEDKIGEGTFSSVYLATAQLQV-GPEEKIALKHLIPTS---HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV--   96 (361)
T ss_dssp             CEEEEEEEECSSEEEEEEEEEBTT-SCEEEEEEEEECTTS---CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE--
T ss_pred             EEEEEEEecccCcEEEEEEEcccC-CCCCEEEEEEEcccc---CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE--
Confidence            4554444  478999999641101 124556666543322   222344555556655 7999999887766554444  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC-CcEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS-NQVK  369 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~-~~vk  369 (1092)
                                    .+||||+|++|.++++    .++..+++.|++||+.||+|||++||+||||||+||||+.+ +.+|
T Consensus        97 --------------lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~k  158 (361)
T 4f9c_A           97 --------------IAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYA  158 (361)
T ss_dssp             --------------EEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEE
T ss_pred             --------------EEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEE
Confidence                          3899999999999994    37788999999999999999999999999999999999876 8999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+|+...+....                                                            +.+|
T Consensus       159 l~DFGla~~~~~~~~~------------------------------------------------------------~~~~  178 (361)
T 4f9c_A          159 LVDFGLAQGTHDTKIE------------------------------------------------------------LLKF  178 (361)
T ss_dssp             ECCCTTCEECTTCSCG------------------------------------------------------------GGGG
T ss_pred             ECcCCCCcccCCcccc------------------------------------------------------------cccc
Confidence            9999999876532110                                                            0000


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~  528 (1092)
                      +...........               ..+.........++..+||++|||||++.+. .|+.++|||||||+||||++|
T Consensus       179 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G  243 (361)
T 4f9c_A          179 VQSEAQQERCSQ---------------NKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSG  243 (361)
T ss_dssp             C-----------------------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccc---------------ccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHC
Confidence            000000000000               0000000112234578999999999999885 489999999999999999985


Q ss_pred             ---CC-cHHHHHHHHHhcc--------------------ccC--------------------------------CCCCCC
Q 001366          529 ---FD-SERALAAAMSDLR--------------------DRI--------------------------------LPPSFL  552 (1092)
Q Consensus       529 ---f~-~~~~~~~~~~~~~--------------------~~~--------------------------------~p~~~~  552 (1092)
                         |. +..+..+......                    ...                                ..+.+.
T Consensus       244 ~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  323 (361)
T 4f9c_A          244 RYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWN  323 (361)
T ss_dssp             CSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CT
T ss_pred             CCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccc
Confidence               42 2222222111100                    000                                011234


Q ss_pred             CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          553 SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       553 ~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ..++++.+||.+||++||.+|||++|+|+||||++.
T Consensus       324 ~is~~a~DLl~~lL~~dP~~R~ta~eaL~Hp~f~~i  359 (361)
T 4f9c_A          324 EVPDEAYDLLDKLLDLNPASRITAEEALLHPFFKDM  359 (361)
T ss_dssp             TCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGTTC
T ss_pred             cCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCC
Confidence            567889999999999999999999999999999874

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.9e-38  Score=357.27  Aligned_cols=247  Identities=18%  Similarity=0.162  Sum_probs=185.0

Q ss_pred             hhccccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      -..||+|.||+|...... ...+..+|+|+............-.++..++...+||||+.++.....+...+        
T Consensus        34 lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~--------  105 (308)
T 4gt4_A           34 LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS--------  105 (308)
T ss_dssp             EEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE--------
T ss_pred             eccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE--------
Confidence            344589999999752211 11245567666533322222233456778888999999999887765444443        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeE
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFK  361 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nil  361 (1092)
                              ++||||+||+|.++|....               ..+++.+++.|+.||+.||+|||+++||||||||+|||
T Consensus       106 --------lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NIL  177 (308)
T 4gt4_A          106 --------MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVL  177 (308)
T ss_dssp             --------EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             --------EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceE
Confidence                    3899999999999996532               24788899999999999999999999999999999999


Q ss_pred             EccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          362 LLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       362 l~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      |+.++.+||+|||+++.+.....                                                         
T Consensus       178 l~~~~~~Ki~DFGlar~~~~~~~---------------------------------------------------------  200 (308)
T 4gt4_A          178 VYDKLNVKISDLGLFREVYAADY---------------------------------------------------------  200 (308)
T ss_dssp             ECGGGCEEECCSCCBCGGGGGGC---------------------------------------------------------
T ss_pred             ECCCCCEEECCcccceeccCCCc---------------------------------------------------------
Confidence            99999999999999987542100                                                         


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                                                                  ....+..+||+.|||||++.++.|+.++|||||||+
T Consensus       201 --------------------------------------------~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvv  236 (308)
T 4gt4_A          201 --------------------------------------------YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVV  236 (308)
T ss_dssp             --------------------------------------------BCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             --------------------------------------------eeEecccccCCcccCHHHHhCCCCCccchhhhHHHH
Confidence                                                        001125679999999999999999999999999999


Q ss_pred             HHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          522 FFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       522 l~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||||+| +   |.+.... ..+..+.....+|.....++.+.+|+.+||+.||.+|||+.||+++
T Consensus       237 l~El~t~g~~Pf~~~~~~-~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~  300 (308)
T 4gt4_A          237 LWEVFSYGLQPYCGYSNQ-DVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSR  300 (308)
T ss_dssp             HHHHHTTTCCTTTTCCHH-HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCCHH-HHHHHHHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            999997 3   5444333 2333344444445555678889999999999999999999999875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1e-34  Score=327.98  Aligned_cols=299  Identities=20%  Similarity=0.298  Sum_probs=247.3

Q ss_pred             eeecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC
Q 001366          773 GEFNNSANVICSISFDRD-EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG  851 (1092)
Q Consensus       773 ~~l~~h~~~V~sl~fspd-g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg  851 (1092)
                      ..|.+|.+.|++|+|+|+ +++|||||.|++|+|||+.....  ..........+|...|.+++|+|+ +.+|++++.|+
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~--~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d~  108 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--NYGIPQRALRGHSHFVSDVVISSD-GQFALSGSWDG  108 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS--CSEEEEEEECCCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc--ccceeeEEEeCCCCCEEEEEECCC-CCEEEEEcccc
Confidence            357899999999999997 68999999999999999875221  111222345679999999999998 89999999999


Q ss_pred             cEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeE--ecCCceEEEEEccCCC-eE
Q 001366          852 VVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI--KNIANVCCVQFSAHSS-HL  928 (1092)
Q Consensus       852 tV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l--~~~~~V~sl~fsp~~~-~~  928 (1092)
                      .|++|+............+...+..+.+++ ++..|++|+.|+.+++||+.........  .+...+.+++|++++. .+
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             cceEEeecccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            999999999988888888889999999999 7889999999999999999866543322  2567899999998753 47


Q ss_pred             EEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCC
Q 001366          929 LAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTN 1007 (1092)
Q Consensus       929 latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~ 1007 (1092)
                      +++++.|+.|++||+++.+ ....+.+|...|.+++|+ ++.+|++|+.|++|++||++        ...++..+..+ .
T Consensus       188 ~~s~~~d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~--------~~~~~~~~~~~-~  257 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN--------EGKHLYTLDGG-D  257 (340)
T ss_dssp             EEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT--------TTEEEEEEECS-S
T ss_pred             EEEEcCCCEEEEEECCCCc-eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec--------cCceeeeecCC-c
Confidence            8899999999999999875 467788999999999999 67799999999999999998        34566677654 5


Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEE
Q 001366         1008 EKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIK 1087 (1092)
Q Consensus      1008 ~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~ 1087 (1092)
                      .+.+++|+|++.++ +++.|+.|++||+..+..+..+...     ........|...|++++|+|++++|+||+.||.|+
T Consensus       258 ~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~  331 (340)
T 4aow_A          258 IINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQE-----VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR  331 (340)
T ss_dssp             CEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEecccc-----ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            79999999987654 5667999999999888777665421     11123357888999999999999999999999999


Q ss_pred             EEEc
Q 001366         1088 VLQM 1091 (1092)
Q Consensus      1088 vW~l 1091 (1092)
                      ||++
T Consensus       332 iW~~  335 (340)
T 4aow_A          332 VWQV  335 (340)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            9996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=334.10  Aligned_cols=288  Identities=19%  Similarity=0.249  Sum_probs=248.3

Q ss_pred             hhccchhhhhhcccccc--CCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 001366          726 LRDRENLFLAQQDQEIQ--NPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKI  803 (1092)
Q Consensus       726 l~~~~~~~~~~~~~~~~--~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I  803 (1092)
                      +.+|.+.+.++.+....  +..-.++++.|+++++|++......   ....+.+|...|.+++|++++.++++|+.|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i  104 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI  104 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---EEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            45677777666542211  1223568899999999998654332   123477999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCC
Q 001366          804 KIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVH  883 (1092)
Q Consensus       804 ~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~  883 (1092)
                      +|||+...       ........+...+.+++|+|+ +.+|++++.||+|++||+.+++....+..|...|.+++|+| +
T Consensus       105 ~lWd~~~~-------~~~~~~~~~~~~~~~~~~spd-g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-d  175 (321)
T 3ow8_A          105 RLWDLENG-------KQIKSIDAGPVDAWTLAFSPD-SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-D  175 (321)
T ss_dssp             EEEETTTT-------EEEEEEECCTTCCCCEEECTT-SSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-T
T ss_pred             EEEECCCC-------CEEEEEeCCCccEEEEEECCC-CCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-C
Confidence            99998752       222334457788999999998 89999999999999999999999999999999999999999 8


Q ss_pred             CCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEE
Q 001366          884 PTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSY  962 (1092)
Q Consensus       884 ~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~  962 (1092)
                      +++|++|+.|+.|++||+++++.+.++. +...|.+++|+|++. +|++|+.|+.|++||+++.. ....+.+|...|.+
T Consensus       176 g~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~  253 (321)
T 3ow8_A          176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHAN-LAGTLSGHASWVLN  253 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTCC-EEEEECCCSSCEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCcc-eeEEEcCCCCceEE
Confidence            9999999999999999999999998887 577899999999985 99999999999999999765 46788999999999


Q ss_pred             EEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeC
Q 001366          963 VKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus       963 v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                      ++|+ ++.+|++++.|++|+|||+.        .+.++.++.+|...|++++|+|++.+|++++.|+.|+|||.
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~--------~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVG--------TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT--------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCC--------CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            9999 67789999999999999998        46788999999999999999999999999999999999985

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=2.2e-38  Score=355.24  Aligned_cols=254  Identities=16%  Similarity=0.109  Sum_probs=186.8

Q ss_pred             HHHhhhc--cccceeeeCCCCCccc-cccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFK-ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  +|+|.||+|...+... ..+..+|.|+.... .......-.++..++...+||||+.++.....+...+  
T Consensus        15 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~--   91 (299)
T 4asz_A           15 IVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA-SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI--   91 (299)
T ss_dssp             EEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE--
T ss_pred             eEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC-ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE--
Confidence            4444444  5799999997532111 12445666654322 1222334557888899999999999888766444444  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcC------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCC
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARG------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPS  358 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~  358 (1092)
                                    ++||||+||+|.++|...+            ..+++.+++.|+.||++||+|||+++||||||||+
T Consensus        92 --------------lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~  157 (299)
T 4asz_A           92 --------------MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATR  157 (299)
T ss_dssp             --------------EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred             --------------EEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHh
Confidence                          3899999999999997643            46888899999999999999999999999999999


Q ss_pred             CeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcc
Q 001366          359 SFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKI  438 (1092)
Q Consensus       359 Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1092)
                      ||||+.++.+||+|||+++.......                                                      
T Consensus       158 NILl~~~~~~Ki~DFGla~~~~~~~~------------------------------------------------------  183 (299)
T 4asz_A          158 NCLVGENLLVKIGDFGMSRDVYSTDY------------------------------------------------------  183 (299)
T ss_dssp             GEEECGGGCEEECCCSCHHHHTGGGC------------------------------------------------------
T ss_pred             hEEECCCCcEEECCcccceecCCCCc------------------------------------------------------
Confidence            99999999999999999987541100                                                      


Q ss_pred             cccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhh
Q 001366          439 ETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSL  518 (1092)
Q Consensus       439 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSL  518 (1092)
                                                                     .......+||+.|||||++.+..|+.++|||||
T Consensus       184 -----------------------------------------------~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~  216 (299)
T 4asz_A          184 -----------------------------------------------YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSL  216 (299)
T ss_dssp             -----------------------------------------------EEETTTEEECGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             -----------------------------------------------eeecCceecChhhcCHHHHcCCCCCchhhHHHH
Confidence                                                           000114578999999999999999999999999


Q ss_pred             hHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          519 GVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       519 Gvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ||+||||+| |   |....... .+..+.....++.....++++.+|+.+||+.||++|||+.+|+  +++...
T Consensus       217 Gvvl~Ellt~G~~Pf~~~~~~~-~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~--~~L~~~  287 (299)
T 4asz_A          217 GVVLWEIFTYGKQPWYQLSNNE-VIECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIH--TLLQNL  287 (299)
T ss_dssp             HHHHHHHHTTTCCTTTTSCHHH-HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH--HHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCHHH-HHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHH--HHHHHH
Confidence            999999997 4   54433332 3333333333444455688899999999999999999999994  566543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=6.3e-38  Score=356.34  Aligned_cols=245  Identities=15%  Similarity=0.058  Sum_probs=178.3

Q ss_pred             hccccceeeeCCCCCccc-cccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFK-ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|+|+||+|...+... ..+..+|.|+.... .......-.++..++...+||||+.++.....+...+         
T Consensus        50 G~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~---------  119 (329)
T 4aoj_A           50 GEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL---------  119 (329)
T ss_dssp             EECSSEEEEEEEESSSCC---CEEEEEEEESCC-SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE---------
T ss_pred             ccCCCcEEEEEEECCcccCCCCeEEEEEEECcC-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE---------
Confidence            445899999997532111 12455666655322 2222334457888899999999999887765444434         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcC--------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARG--------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~--------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                             ++||||+||+|.++|+..+              ..+++.+++.|+.||+.||+|||+++||||||||+||||+
T Consensus       120 -------lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~  192 (329)
T 4aoj_A          120 -------MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVG  192 (329)
T ss_dssp             -------EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEE
T ss_pred             -------EEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEEC
Confidence                   3899999999999997643              2478889999999999999999999999999999999999


Q ss_pred             cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCc
Q 001366          364 QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANE  443 (1092)
Q Consensus       364 ~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1092)
                      .++.+||+|||+++.+.....                                                           
T Consensus       193 ~~~~~Ki~DFGla~~~~~~~~-----------------------------------------------------------  213 (329)
T 4aoj_A          193 QGLVVKIGDFGMSRDIYSTDY-----------------------------------------------------------  213 (329)
T ss_dssp             TTTEEEECCCC---------------------------------------------------------------------
T ss_pred             CCCcEEEcccccceeccCCCc-----------------------------------------------------------
Confidence            999999999999987541100                                                           


Q ss_pred             cccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHH
Q 001366          444 SDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       444 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~  523 (1092)
                                                                ....+..+||+.|||||++.+..|+.++|||||||+||
T Consensus       214 ------------------------------------------~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~  251 (329)
T 4aoj_A          214 ------------------------------------------YRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLW  251 (329)
T ss_dssp             ------------------------------------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             ------------------------------------------ceecCcccccccccChhhhcCCCCCccccccchHHHHH
Confidence                                                      00012457999999999999999999999999999999


Q ss_pred             HHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          524 ELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       524 ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||+| +   |........ +..+.....++.....++++.+|+.+||+.||++|||+.||+++
T Consensus       252 Ellt~G~~Pf~~~~~~~~-~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~  313 (329)
T 4aoj_A          252 EIFTYGKQPWYQLSNTEA-IDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHAR  313 (329)
T ss_dssp             HHHTTSCCTTCSSCHHHH-HHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHH
T ss_pred             HHHcCCCCCCCCCCHHHH-HHHHHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence            9997 4   544333332 22233322333344568899999999999999999999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-36  Score=352.32  Aligned_cols=327  Identities=15%  Similarity=0.182  Sum_probs=265.9

Q ss_pred             EcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCC
Q 001366          751 FFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSK  830 (1092)
Q Consensus       751 ~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~  830 (1092)
                      +.|+.+++|++........+   ....|...|++++|+|++.+||+|+.|+.|+||++......   ........+|...
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~---~~~~~~~~~h~~~  115 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPI---ASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA---INSMARFSNHSSS  115 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCS---CCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC---CCEEEECCCSSSC
T ss_pred             CCCCeEEEEEccCCCCCcEE---EEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc---ccchhhccCCccc
Confidence            57889999998754321111   12358899999999999999999999999999998752111   1122344568999


Q ss_pred             eEEEEEecCCCCEEEEEECCCcEEEEECCCCc------eEE---EeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEec
Q 001366          831 LSCVCWNNYIKNYLASADYDGVVKLWDACTGQ------TVS---HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI  901 (1092)
Q Consensus       831 V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~------~i~---~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl  901 (1092)
                      |.+++|+|+++.+|++++.||+|++||+.+++      ...   .+..|...|.+++|+|..+.+|++++.|+.|++||+
T Consensus       116 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  195 (416)
T 2pm9_A          116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL  195 (416)
T ss_dssp             CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEET
T ss_pred             eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEEC
Confidence            99999999768899999999999999999876      332   346799999999999944789999999999999999


Q ss_pred             CCCceeeeEec-------CCceEEEEEccCCCeEEEEEECCC---eEEEEEcCCCCcceEEec-CCCCCeEEEEEcC--C
Q 001366          902 NEKNSLATIKN-------IANVCCVQFSAHSSHLLAFGSADY---RTYCYDLRNARAPWCVLA-GHEKAVSYVKFLD--S  968 (1092)
Q Consensus       902 ~~~~~l~~l~~-------~~~V~sl~fsp~~~~~latgs~Dg---~I~vwDlr~~~~~~~~l~-~H~~~V~~v~fs~--~  968 (1092)
                      ++++.+..+..       ...|.+++|+|++..++++++.|+   .|++||+++...++..+. +|...|.+++|++  +
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  275 (416)
T 2pm9_A          196 KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE  275 (416)
T ss_dssp             TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS
T ss_pred             CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC
Confidence            99999888874       578999999999877999999999   999999998766677787 9999999999984  6


Q ss_pred             CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCC-CEEEEEecCCcEEEEeCCCCCceeeeec-
Q 001366          969 GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTAD-GYIACGSESNEVYAYHRSLPMPITSYKF- 1046 (1092)
Q Consensus       969 ~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~I~Iwd~~~~~~i~~~~~- 1046 (1092)
                      .+|++++.|++|++||++        .+.++..+.+|...|++++|+|++ .+|++++.|+.|+||++..........- 
T Consensus       276 ~~l~s~~~dg~v~~wd~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~  347 (416)
T 2pm9_A          276 HLLLSSGRDNTVLLWNPE--------SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQET  347 (416)
T ss_dssp             SCEEEEESSSEEEEECSS--------SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---
T ss_pred             CeEEEEeCCCCEEEeeCC--------CCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccc
Confidence            789999999999999998        456788999999999999999998 8999999999999999987654332110 


Q ss_pred             ------------cc------c---CCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEcC
Q 001366         1047 ------------GS------I---DPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092 (1092)
Q Consensus      1047 ------------~~------~---~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~lv 1092 (1092)
                                  ..      .   ....- .....|...|.+++|+|+|++|++++.||.|+||++.
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          348 ETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             -------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred             cccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence                        00      0   00000 1112367788999999999999999999999999973

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=335.66  Aligned_cols=328  Identities=16%  Similarity=0.240  Sum_probs=261.9

Q ss_pred             cCCCCc---EEeEcCCeEEEEEc----ccce------EEeeEEeeeec------CCCCCEEEEEEcCCCCEEEEEeCCCc
Q 001366          742 QNPTDR---LGAFFDGLCKYARY----SKFE------VQGMLRTGEFN------NSANVICSISFDRDEDHFAAAGVSKK  802 (1092)
Q Consensus       742 ~~~~~~---l~~~~D~~~k~w~~----~~~~------~~~~l~~~~l~------~h~~~V~sl~fspdg~~latgg~D~~  802 (1092)
                      ++|++.   +.+..|+.+++|++    ...+      ....+.. .+.      +|...|++++|+|++++|++|+.|+.
T Consensus        53 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  131 (425)
T 1r5m_A           53 WNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH-PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGE  131 (425)
T ss_dssp             ECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC-CCCCC------CBCEEEEEECTTSSEEEEEETTSC
T ss_pred             ECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc-cccccccccCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence            456544   46678999999998    5554      2222221 222      26889999999999999999999999


Q ss_pred             EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCcc---------
Q 001366          803 IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKR---------  873 (1092)
Q Consensus       803 I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~---------  873 (1092)
                      |+||+...        ........|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+..|...         
T Consensus       132 i~i~~~~~--------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (425)
T 1r5m_A          132 LRLWNKTG--------ALLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH  202 (425)
T ss_dssp             EEEEETTS--------CEEEEECCCCSCEEEEEECTT-SSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred             EEEEeCCC--------CeeeeccCCCccEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence            99999432        222344568999999999998 889999999999999999999999999888777         


Q ss_pred             ------EEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCC
Q 001366          874 ------AWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA  946 (1092)
Q Consensus       874 ------V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~  946 (1092)
                            +.++.|++ + ..+++++.|+.|++||+++++.+..+. +...|.+++|+|++. +|++++.|+.|++||+++.
T Consensus       203 ~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~  279 (425)
T 1r5m_A          203 SGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNG  279 (425)
T ss_dssp             ---CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSB
T ss_pred             cCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC
Confidence                  99999998 4 579999999999999999998888886 678899999999986 8999999999999999986


Q ss_pred             CcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEec
Q 001366          947 RAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE 1026 (1092)
Q Consensus       947 ~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~ 1026 (1092)
                      + ....+.+|...|.+++|++++.+++++.|+.|++||++        .+.++..+..|...+.+++|+|++.+|++|+.
T Consensus       280 ~-~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          280 N-SQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLK--------QNTLLALSIVDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             S-CSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETT--------TTEEEEEEECTTCCEEEEEECTTSSEEEEEET
T ss_pred             c-cceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECC--------CCcEeEecccCCccEEEEEEcCCCCEEEEEEC
Confidence            5 45777889999999999966699999999999999998        45678888899999999999999999999999


Q ss_pred             CCcEEEEeCCCCCceeeeeccccCC------CCCccccCCCCC--CEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1027 SNEVYAYHRSLPMPITSYKFGSIDP------ISGKETDDDNGL--FVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1027 Dg~I~Iwd~~~~~~i~~~~~~~~~~------i~~~~~~~~h~~--~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |+.|++|++..+........+..+.      .........|..  .|++++|+|++.+|++++.||.|+||++
T Consensus       351 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          351 DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence            9999999987665111000000000      001123345654  8999999999999999999999999997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-34  Score=325.98  Aligned_cols=284  Identities=15%  Similarity=0.210  Sum_probs=248.7

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|...|++++|+|++++||+|+.|+.|+|||+...       .......+|...|.+++|+|+ +++|++++.||+|
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i   98 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-------ERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSI   98 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-------hhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeE
Confidence            46799999999999999999999999999999998752       222344568999999999997 8999999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCC-----CcEEEEecCCCceee-----------eEe-cCC--
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDD-----CSVKLWNINEKNSLA-----------TIK-NIA--  914 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~D-----g~I~iWDl~~~~~l~-----------~l~-~~~--  914 (1092)
                      ++||+.+++.+..+. |...|.+++|+| ++..+++++.+     +.|++||+..+....           .+. +..  
T Consensus        99 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (369)
T 3zwl_B           99 KLWDVSNGQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD  176 (369)
T ss_dssp             EEEETTTCCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred             EEEECCCCcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence            999999999998887 889999999999 88999999999     999999998765332           222 223  


Q ss_pred             ceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCC
Q 001366          915 NVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGP  993 (1092)
Q Consensus       915 ~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~  993 (1092)
                      .+.+++|+|++. +|++|+.||.|++||+++....+..+..|...|.+++|+ ++.+|++++.|+.|++||+++      
T Consensus       177 ~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~------  249 (369)
T 3zwl_B          177 AATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST------  249 (369)
T ss_dssp             CEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT------
T ss_pred             ceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC------
Confidence            899999999985 899999999999999998556678888999999999999 677899999999999999983      


Q ss_pred             CCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCC--------------cEEEEeCCCCCceeeeeccccCCCCCccccC
Q 001366          994 STNACSLTFSGHTNEKNFVGLSTADGYIACGSESN--------------EVYAYHRSLPMPITSYKFGSIDPISGKETDD 1059 (1092)
Q Consensus       994 ~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg--------------~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~ 1059 (1092)
                        ..++..+. +...+..++|+|++.++++++.++              .|++||...++++..+              .
T Consensus       250 --~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------------~  312 (369)
T 3zwl_B          250 --LQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV--------------Q  312 (369)
T ss_dssp             --CCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE--------------E
T ss_pred             --Cceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe--------------e
Confidence              45566665 778899999999999999999988              8999998888777654              3


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1060 DNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1060 ~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +|...|.+++|+|++++|++++.||.|+||++
T Consensus       313 ~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          313 GHFGPLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            57788999999999999999999999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.4e-35  Score=341.12  Aligned_cols=298  Identities=18%  Similarity=0.240  Sum_probs=247.2

Q ss_pred             chhhhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC
Q 001366          723 NDLLRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS  800 (1092)
Q Consensus       723 ~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D  800 (1092)
                      ..++++|.+.+.++.+    +|++  .++++.|+++++|+....+...     .+..|...|.+++|+|+|++||+|+.|
T Consensus        59 ~~~l~gH~~~V~~~~~----sp~~~~l~s~s~D~~v~iWd~~~~~~~~-----~~~~h~~~v~~~~~s~~g~~las~~~d  129 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDW----TPEKNWIVSASQDGRLIVWNALTSQKTH-----AIKLHCPWVMECAFAPNGQSVACGGLD  129 (380)
T ss_dssp             EEEECCCSSCEEEEEE----CTTSSCEEEEETTSEEEEEETTTTEEEE-----EEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred             eecccccccEEEEEEE----cCCCCEEEEEeCCCeEEEEECCCCccce-----EEecCCCCEEEEEECCCCCEEEEeeCC
Confidence            3567888888776654    4443  5688999999999987765544     345799999999999999999999999


Q ss_pred             CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEe-----eccCccEE
Q 001366          801 KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHY-----IEHEKRAW  875 (1092)
Q Consensus       801 ~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l-----~~h~~~V~  875 (1092)
                      +.|+||++.................+|...|.++.|+|+.+..|++|+.|++|++||+.+++.+..+     .+|...|.
T Consensus       130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred             CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence            9999999875322111222233456799999999999986778999999999999999999998887     67999999


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEecC-CCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEe
Q 001366          876 SVDFSQVHPTKLASGSDDCSVKLWNIN-EKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVL  953 (1092)
Q Consensus       876 sv~fsp~~~~~laSgs~Dg~I~iWDl~-~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l  953 (1092)
                      +++|++.++.+|++|+.|++|++||++ .+.++..+. |...|++++|+|++. +|++|+.|++|++||++++.. +..+
T Consensus       210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~-~~~~  287 (380)
T 3iz6_a          210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQ-LQVY  287 (380)
T ss_dssp             EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEE-EEEE
T ss_pred             EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcE-EEEe
Confidence            999998788999999999999999998 456777776 678899999999985 899999999999999998754 3444


Q ss_pred             cCC-------CCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEE----cCCCCCeEEEEEecCCCEE
Q 001366          954 AGH-------EKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTF----SGHTNEKNFVGLSTADGYI 1021 (1092)
Q Consensus       954 ~~H-------~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l----~~h~~~V~~v~~spdg~~l 1021 (1092)
                      ..+       ...|++++|+ ++.+|++|+.||.|++||+..        +.....+    .+|...|++++|+|+|.+|
T Consensus       288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~--------~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  359 (380)
T 3iz6_a          288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL--------AEMVLNLGTLQNSHEGRISCLGLSSDGSAL  359 (380)
T ss_dssp             CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT--------CCEEEEECCSCSSCCCCCCEEEECSSSSEE
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC--------CceEEEEecccCCCCCceEEEEECCCCCEE
Confidence            433       2358999999 678999999999999999973        4455555    6799999999999999999


Q ss_pred             EEEecCCcEEEEeCCCCC
Q 001366         1022 ACGSESNEVYAYHRSLPM 1039 (1092)
Q Consensus      1022 asgs~Dg~I~Iwd~~~~~ 1039 (1092)
                      ++||.|++|+||++....
T Consensus       360 ~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          360 CTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEECTTSCEEEEECCSSS
T ss_pred             EEeeCCCCEEEEecCCCc
Confidence            999999999999987543

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=5.2e-38  Score=360.00  Aligned_cols=253  Identities=16%  Similarity=0.129  Sum_probs=185.1

Q ss_pred             hHHHhhhc--cccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccCCC-CCCCccccceecCC-CC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNAS-PKPVGVGTAVVSNG-SL  287 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~  287 (1092)
                      +|.+.+.+  +++|+||+|..... -......++.|+............-.++..++....| |||+.++....... ..
T Consensus        65 ~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~  144 (353)
T 4ase_A           65 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPL  144 (353)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCC
T ss_pred             HeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEE
Confidence            45555544  48999999974210 0111344566555333333333445566777777755 89998877644322 12


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCccc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVTF  352 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvH  352 (1092)
                      +                ++||||+||+|.++|+...               ..+++.+++.|+.||+.||+|||+++|||
T Consensus       145 ~----------------iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiH  208 (353)
T 4ase_A          145 M----------------VIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIH  208 (353)
T ss_dssp             E----------------EEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             E----------------EEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeec
Confidence            2                3899999999999996532               34788899999999999999999999999


Q ss_pred             cCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccC
Q 001366          353 LDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPS  432 (1092)
Q Consensus       353 rDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (1092)
                      |||||+||||+.++.+||+|||+|+.+.....                                                
T Consensus       209 RDLK~~NILl~~~~~vKi~DFGlar~~~~~~~------------------------------------------------  240 (353)
T 4ase_A          209 RDLAARNILLSEKNVVKICDFGLARDIYKDPD------------------------------------------------  240 (353)
T ss_dssp             SCCSGGGEEECGGGCEEECCCGGGSCTTTCTT------------------------------------------------
T ss_pred             CccCccceeeCCCCCEEECcchhhhhcccCCC------------------------------------------------
Confidence            99999999999999999999999987541100                                                


Q ss_pred             ccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCcc
Q 001366          433 KYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTS  512 (1092)
Q Consensus       433 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~  512 (1092)
                                                                           ....+..+||+.|||||++.+..|+.+
T Consensus       241 -----------------------------------------------------~~~~~~~~gt~~ymAPE~l~~~~y~~k  267 (353)
T 4ase_A          241 -----------------------------------------------------YVRKGDARLPLKWMAPETIFDRVYTIQ  267 (353)
T ss_dssp             -----------------------------------------------------SEEETTEEECGGGCCHHHHHHCCCCHH
T ss_pred             -----------------------------------------------------ceeeccccccccccCHHHHhcCCCCCc
Confidence                                                                 001125679999999999999999999


Q ss_pred             ccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          513 SNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       513 sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      +|||||||+||||++ |   |.+..........+.....++.....++++.+|+.+||+.||.+|||+.||++|
T Consensus       268 sDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~  341 (353)
T 4ase_A          268 SDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  341 (353)
T ss_dssp             HHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence            999999999999997 3   544332333344444444444444568899999999999999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.4e-35  Score=335.50  Aligned_cols=282  Identities=14%  Similarity=0.083  Sum_probs=225.8

Q ss_pred             cCCCCcE-EeEcCCeEEEEEcccceEEeeE------EeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 001366          742 QNPTDRL-GAFFDGLCKYARYSKFEVQGML------RTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFND  814 (1092)
Q Consensus       742 ~~~~~~l-~~~~D~~~k~w~~~~~~~~~~l------~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~  814 (1092)
                      ++|++.+ .+..|+++++|+...+......      .......|...|++++|+|++ .|++|+.|++|+|||+....  
T Consensus        38 fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~--  114 (344)
T 4gqb_B           38 YRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENE--  114 (344)
T ss_dssp             ECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTS--
T ss_pred             ECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCC--
Confidence            4666654 3344777777763211100000      000112356789999999985 78899999999999997522  


Q ss_pred             CcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCC
Q 001366          815 SVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC  894 (1092)
Q Consensus       815 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg  894 (1092)
                       ..........+|...|++|+|+|+ +++|++|+.||+|+|||+.+++++..+.+|...|++++|+|.+..+|++|+.|+
T Consensus       115 -~~~~~~~~~~~H~~~V~~v~~spd-g~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~  192 (344)
T 4gqb_B          115 -TLIVSKFCKYEHDDIVSTVSVLSS-GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDN  192 (344)
T ss_dssp             -SCEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             -ceeEeeccccCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccc
Confidence             111222345589999999999998 899999999999999999999999999999999999999995557899999999


Q ss_pred             cEEEEecCCCceeeeEe---cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC-C-C
Q 001366          895 SVKLWNINEKNSLATIK---NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD-S-G  969 (1092)
Q Consensus       895 ~I~iWDl~~~~~l~~l~---~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~-~-~  969 (1092)
                      +|++||+++++++..+.   +...+++++|+|++.++|++|+.|+.|++||+++++ ++..+.+|...|++|+|++ + .
T Consensus       193 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~fsp~g~~  271 (344)
T 4gqb_B          193 RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-CVLSSAVHSQCVTGLVFSPHSVP  271 (344)
T ss_dssp             CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSC
T ss_pred             ccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCe
Confidence            99999999999888775   345699999999887899999999999999999876 4678899999999999994 3 4


Q ss_pred             EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC-EEEEEecCCcEEEEeCCCC
Q 001366          970 TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG-YIACGSESNEVYAYHRSLP 1038 (1092)
Q Consensus       970 ~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~I~Iwd~~~~ 1038 (1092)
                      +|++|+.|++|+|||+.+        +. +..+.+|...|++++|+|++. +|++||.|++|++|++...
T Consensus       272 ~lasgs~D~~i~vwd~~~--------~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          272 FLASLSEDCSLAVLDSSL--------SE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             CEEEEETTSCEEEECTTC--------CE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEEEEeCCCeEEEEECCC--------Cc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            689999999999999983        33 456789999999999999986 6789999999999998653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.6e-34  Score=328.64  Aligned_cols=291  Identities=17%  Similarity=0.236  Sum_probs=245.6

Q ss_pred             chhhhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC
Q 001366          723 NDLLRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS  800 (1092)
Q Consensus       723 ~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D  800 (1092)
                      ...+++|.+.+.++.+    +|++  .++++.|+++++|+.........     +..|...|.+++|+|+|.+||+|+.|
T Consensus        57 ~~~l~gH~~~V~~~~~----s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~-----~~~~~~~v~~~~~sp~g~~lasg~~d  127 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDW----CKDKRRIVSSSQDGKVIVWDSFTTNKEHA-----VTMPCTWVMACAYAPSGCAIACGGLD  127 (354)
T ss_dssp             EEEEECCSSCEEEEEE----CTTSSEEEEEETTSEEEEEETTTCCEEEE-----EECSSSCCCEEEECTTSSEEEEESTT
T ss_pred             EEEecCCCCeEEEEEE----CCCCCEEEEEeCCCeEEEEECCCCCcceE-----EecCCCCEEEEEECCCCCEEEEeeCC
Confidence            3557788887776644    4444  45889999999999876554433     44688899999999999999999999


Q ss_pred             CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEe
Q 001366          801 KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFS  880 (1092)
Q Consensus       801 ~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fs  880 (1092)
                      ++|++|++....... ..........|...|.+++|+|+ +..|++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus       128 ~~i~v~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~  205 (354)
T 2pbi_B          128 NKCSVYPLTFDKNEN-MAAKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA  205 (354)
T ss_dssp             SEEEEEECCCCTTCC-SGGGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             CCEEEEEEecccccc-ccccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence            999999986422111 11223345579999999999998 8899999999999999999999999999999999999998


Q ss_pred             cC-CCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecC--C
Q 001366          881 QV-HPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG--H  956 (1092)
Q Consensus       881 p~-~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~--H  956 (1092)
                      |. ++..|++|+.|++|++||+++++++..+. |...|++++|+|++. +|++|+.|++|++||+++... +..+..  +
T Consensus       206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~  283 (354)
T 2pbi_B          206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADRE-VAIYSKESI  283 (354)
T ss_dssp             CCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-EEEECCTTC
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcE-EEEEcCCCc
Confidence            84 35799999999999999999999998887 678899999999985 899999999999999998653 344433  3


Q ss_pred             CCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          957 EKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       957 ~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      ...+.+++|+ ++.+|++|+.|++|++||+.        .+.++..+.+|...|++++|+|+|.+||+|+.|++|+||+
T Consensus       284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~--------~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVL--------KGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEETT--------TCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ccceeEEEEeCCCCEEEEEECCCcEEEEECC--------CCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            4578999999 67789999999999999998        3566788999999999999999999999999999999995

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-34  Score=329.18  Aligned_cols=304  Identities=16%  Similarity=0.267  Sum_probs=248.3

Q ss_pred             ecCCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCC---CCEEEEE
Q 001366          775 FNNSANVICSISFDRD----EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI---KNYLASA  847 (1092)
Q Consensus       775 l~~h~~~V~sl~fspd----g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~---~~~LaSg  847 (1092)
                      ..+|...|++++|+|+    ...+++++.++.|+||++....  ............|...|.+++|+|+.   +.+|++|
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG--EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG--CEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc--EEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            3489999999999984    4566666677799999987421  11111111122367889999999973   3589999


Q ss_pred             ECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeE----ecCCceEEEEEcc
Q 001366          848 DYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI----KNIANVCCVQFSA  923 (1092)
Q Consensus       848 s~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l----~~~~~V~sl~fsp  923 (1092)
                      +.||+|++||+.+++.+..+.+|...|.+++|+|.++.+|++|+.|++|++||+++++.+..+    .+...|.+++|+|
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  171 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL  171 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred             cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence            999999999999999999999999999999999977899999999999999999999998887    3678999999999


Q ss_pred             CCCeEEEEEECCCeEEEEEcCCCCcc---------------------------eEEecCCCCCeEEEEEcCCCEEEEEEC
Q 001366          924 HSSHLLAFGSADYRTYCYDLRNARAP---------------------------WCVLAGHEKAVSYVKFLDSGTLVTAST  976 (1092)
Q Consensus       924 ~~~~~latgs~Dg~I~vwDlr~~~~~---------------------------~~~l~~H~~~V~~v~fs~~~~L~Sgs~  976 (1092)
                      ++. +|++++.|+.|++||+++.+..                           .....+|...|.+++|+ +++|++++.
T Consensus       172 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~  249 (366)
T 3k26_A          172 LGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSC  249 (366)
T ss_dssp             TSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECS
T ss_pred             CCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEec
Confidence            985 8999999999999999875321                           22344599999999998 789999999


Q ss_pred             CCeEEEEEcCCCCCC------CCCCCceeEEEcCCCCCeEEEEEecC--CCEEEEEecCCcEEEEeCCCCCceeeeeccc
Q 001366          977 DNKLKLWDLKRTSHT------GPSTNACSLTFSGHTNEKNFVGLSTA--DGYIACGSESNEVYAYHRSLPMPITSYKFGS 1048 (1092)
Q Consensus       977 Dg~I~vWDl~~~~~~------~~~~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~ 1048 (1092)
                      |+.|++||+++....      .......+..+.+|...|++++|+|+  +.+|++|+.||.|++||+..++++....   
T Consensus       250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---  326 (366)
T 3k26_A          250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC---  326 (366)
T ss_dssp             SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE---
T ss_pred             CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc---
Confidence            999999999864321      11122457788899999999999999  9999999999999999998877553211   


Q ss_pred             cCCCCCccccCCC--CCCEEEEEEeCCCCEEEEEecCCeEEEEEcC
Q 001366         1049 IDPISGKETDDDN--GLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092 (1092)
Q Consensus      1049 ~~~i~~~~~~~~h--~~~V~sva~spd~~~Lasgs~DG~V~vW~lv 1092 (1092)
                             .....|  ...|++++|+|++++|++|+.||.|+||++.
T Consensus       327 -------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          327 -------TTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             -------EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             -------eEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence                   012333  7899999999999999999999999999973

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=1.1e-37  Score=380.27  Aligned_cols=254  Identities=19%  Similarity=0.154  Sum_probs=199.8

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.++  ++|+||++..    ...++.+|.|+.... ...+.....++..++...+||||+.+++....+...+  
T Consensus       158 ~Y~i~~~lG~G~fg~V~~~~~----~~tg~~~AiK~i~~~-~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~--  230 (573)
T 3uto_A          158 HYDIHEELGTGAFGVVHRVTE----RATGNNFAAKFVMTP-HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMV--  230 (573)
T ss_dssp             TEEEEEEEEEETTEEEEEEEE----TTTCCEEEEEEEECC-SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEE--
T ss_pred             ccEEEEEEeeccCeEEEEEEE----CCCCCEEEEEEEecc-chhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEE--
Confidence            355555554  7899999986    334666777654322 2233445567788899999999999988876555444  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC--CcE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS--NQV  368 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~--~~v  368 (1092)
                                    .+||||+||+|.++|......+++.+++.|++||+.||+|||++||+||||||+||||+..  +.+
T Consensus       231 --------------iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~v  296 (573)
T 3uto_A          231 --------------MIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNEL  296 (573)
T ss_dssp             --------------EEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCE
T ss_pred             --------------EEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCE
Confidence                          2899999999999997666678888999999999999999999999999999999999854  899


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.+..                                                                   
T Consensus       297 Kl~DFG~a~~~~~-------------------------------------------------------------------  309 (573)
T 3uto_A          297 KLIDFGLTAHLDP-------------------------------------------------------------------  309 (573)
T ss_dssp             EECCCSSCEECCT-------------------------------------------------------------------
T ss_pred             EEeeccceeEccC-------------------------------------------------------------------
Confidence            9999999987541                                                                   


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                           ...+...+||++|||||++.+..|+.++|||||||+||||++|
T Consensus       310 -------------------------------------~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G  352 (573)
T 3uto_A          310 -------------------------------------KQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSG  352 (573)
T ss_dssp             -------------------------------------TSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------CCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHC
Confidence                                                 0112256899999999999999999999999999999999986


Q ss_pred             ---CCcHHHHHHHHHhcccc--CCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhcc
Q 001366          529 ---FDSERALAAAMSDLRDR--ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEV  591 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~  591 (1092)
                         |.+..............  ..++.+...++.+.+||.+||++||.+|||+.|+|+||||......
T Consensus       353 ~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~Hpw~~~~~~~  420 (573)
T 3uto_A          353 LSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAP  420 (573)
T ss_dssp             CCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTSCCCCT
T ss_pred             CCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcCcCCCCCC
Confidence               65554444444333332  2234456678999999999999999999999999999999875443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.5e-34  Score=360.56  Aligned_cols=303  Identities=19%  Similarity=0.301  Sum_probs=245.3

Q ss_pred             eecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          774 EFNNSANVICSISFDRDE-DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg-~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      .+.+|.+.|++|+|+|++ ++|+||+.|++|+||++.....  ..........+|...|.+++|+|+ +.+|+||+.||+
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~--~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~  453 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK--AYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGE  453 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT--CSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc--ccccccceecCCCCcEEEEEECCC-CCEEEEEeCCCc
Confidence            356999999999999875 7999999999999999875211  111222345689999999999998 899999999999


Q ss_pred             EEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeE----ecCCceEEEEEccCCC-e
Q 001366          853 VKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI----KNIANVCCVQFSAHSS-H  927 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l----~~~~~V~sl~fsp~~~-~  927 (1092)
                      |+|||+.+++.+..+.+|...|++++|+| ++..|+||+.|++|++||+.........    .|...|.+++|+|++. .
T Consensus       454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             EEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            99999999999999999999999999999 8899999999999999998754333222    2556799999999863 4


Q ss_pred             EEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCC
Q 001366          928 LLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHT 1006 (1092)
Q Consensus       928 ~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~ 1006 (1092)
                      ++++|+.|+.|++||+++.+ ....+.+|...|++++|+ ++.+|++|+.||+|+|||+++        +.++..+.. .
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~--------~~~~~~~~~-~  602 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE--------GKKLYSLEA-N  602 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT--------TEEEECCBC-S
T ss_pred             eEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------CceEEEecC-C
Confidence            89999999999999999865 467889999999999999 677999999999999999983        455555554 4


Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCC-----CCccccCCCCCCEEEEEEeCCCCEEEEEe
Q 001366         1007 NEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPI-----SGKETDDDNGLFVSSVCWRRRSDMVVAAN 1081 (1092)
Q Consensus      1007 ~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i-----~~~~~~~~h~~~V~sva~spd~~~Lasgs 1081 (1092)
                      ..|.+++|+|++.+|++++ ++.|+|||+.++..+..+........     .+......+...|++++|+|++.+|++|+
T Consensus       603 ~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs  681 (694)
T 3dm0_A          603 SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY  681 (694)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEc
Confidence            5799999999998887766 56699999999888876653211000     01111122334689999999999999999


Q ss_pred             cCCeEEEEEc
Q 001366         1082 SSGCIKVLQM 1091 (1092)
Q Consensus      1082 ~DG~V~vW~l 1091 (1092)
                      .||.|+||++
T Consensus       682 ~Dg~i~iW~i  691 (694)
T 3dm0_A          682 TDGVIRVWGI  691 (694)
T ss_dssp             TTSEEEEEEC
T ss_pred             CCCeEEEEec
Confidence            9999999997

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1.4e-37  Score=377.63  Aligned_cols=248  Identities=17%  Similarity=0.146  Sum_probs=186.4

Q ss_pred             HHHhhhc--cccceeeeCCCCCcccccccccccccccccc-----CchhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-----MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      |.+.+.+  ||+|+||++..    ...+..+|.|+..-..     ..........+..++...+||||+.++.....+..
T Consensus       191 f~i~k~LG~G~fG~V~la~~----~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~  266 (689)
T 3v5w_A          191 FSVHRIIGRGGFGEVYGCRK----ADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK  266 (689)
T ss_dssp             EEEEEEEEECSSEEEEEEEE----TTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE
T ss_pred             eEEEEEEecccCeEEEEEEE----CCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCE
Confidence            4444444  37899999986    3346777777652111     11111112223456778899999998888776555


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .++                +||||.||+|.++|...+ .+++.+++.|++||+.||+|||++|||||||||+||||+.+|
T Consensus       267 lyl----------------VmEy~~GGdL~~~l~~~~-~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G  329 (689)
T 3v5w_A          267 LSF----------------ILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHG  329 (689)
T ss_dssp             EEE----------------EECCCCSCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTS
T ss_pred             EEE----------------EEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCC
Confidence            553                899999999999998765 477879999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+|+.+...                                                                
T Consensus       330 ~vKL~DFGlA~~~~~~----------------------------------------------------------------  345 (689)
T 3v5w_A          330 HVRISDLGLACDFSKK----------------------------------------------------------------  345 (689)
T ss_dssp             CEEECCCTTCEECSSC----------------------------------------------------------------
T ss_pred             CEEecccceeeecCCC----------------------------------------------------------------
Confidence            9999999999764310                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHH
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~el  525 (1092)
                                                               ...+.+||++|||||++.+ ..|+.++|||||||+||||
T Consensus       346 -----------------------------------------~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEm  384 (689)
T 3v5w_A          346 -----------------------------------------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKL  384 (689)
T ss_dssp             -----------------------------------------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence                                                     0115689999999999975 5799999999999999999


Q ss_pred             cCC---CCcHH--HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          526 FGR---FDSER--ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       526 l~~---f~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      ++|   |.+..  ........+.... +......++++.+||.+||++||.+|++     +.||++||||...
T Consensus       385 LtG~~PF~~~~~~~~~~i~~~i~~~~-~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~i  456 (689)
T 3v5w_A          385 LRGHSPFRQHKTKDKHEIDRMTLTMA-VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSL  456 (689)
T ss_dssp             HHSSCTTCGGGCCCHHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTC
T ss_pred             HhCCCCCCCCChHHHHHHHHhhcCCC-CCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCccccCC
Confidence            986   54321  1222222222111 1122345899999999999999999998     7999999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.9e-34  Score=345.64  Aligned_cols=300  Identities=25%  Similarity=0.333  Sum_probs=259.6

Q ss_pred             cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeec
Q 001366          747 RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       747 ~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~  826 (1092)
                      .+++..|+.+++|+... +...     .+.+|...|++++|+|++++|++++.|+.|++|+...        .......+
T Consensus       236 l~~~~~d~~i~~w~~~~-~~~~-----~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--------~~~~~~~~  301 (577)
T 2ymu_A          236 IASASDDKTVKLWNRNG-QLLQ-----TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--------QLLQTLTG  301 (577)
T ss_dssp             EEEEETTSCEEEECTTS-CEEE-----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECC
T ss_pred             EEEEeCCCEEEEEeCCC-CEEE-----EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--------cEEEEEec
Confidence            45778999999998543 2222     3568999999999999999999999999999999653        12234457


Q ss_pred             CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce
Q 001366          827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS  906 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~  906 (1092)
                      |...|.+++|+|+ +.+|++++.|++|++||.. ++.+..+.+|...|++++|+| ++..|++|+.|+.|++||. +++.
T Consensus       302 h~~~v~~~~~~~~-~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~  377 (577)
T 2ymu_A          302 HSSSVWGVAFSPD-GQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQL  377 (577)
T ss_dssp             CSSCEEEEEECTT-SSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCE
T ss_pred             CCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCE
Confidence            8999999999998 8999999999999999975 556778889999999999999 8999999999999999996 4677


Q ss_pred             eeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEE
Q 001366          907 LATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWD  984 (1092)
Q Consensus       907 l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWD  984 (1092)
                      +..+. +...|.+++|+|++. +|++++.|+.|++||...  ..+..+.+|...|.+++|+ ++.+|++++.|++|++||
T Consensus       378 ~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~  454 (577)
T 2ymu_A          378 LQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN  454 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCC--CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            77776 678899999999995 899999999999999643  3467788999999999999 677999999999999999


Q ss_pred             cCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCC
Q 001366          985 LKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLF 1064 (1092)
Q Consensus       985 l~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~ 1064 (1092)
                      ..         +.++..+.+|...|++++|+|++++||+++.|+.|++|+. .++.+..+              .+|...
T Consensus       455 ~~---------~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~--------------~~h~~~  510 (577)
T 2ymu_A          455 RN---------GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL--------------TGHSSS  510 (577)
T ss_dssp             TT---------SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE--------------ECCSSC
T ss_pred             CC---------CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE--------------eCCCCC
Confidence            75         4567889999999999999999999999999999999995 45554433              467889


Q ss_pred             EEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1065 VSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1065 V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |++|+|+|++++||+++.||.|+||++
T Consensus       511 v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          511 VRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             EEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            999999999999999999999999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.5e-33  Score=317.18  Aligned_cols=285  Identities=11%  Similarity=0.180  Sum_probs=245.6

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEE
Q 001366          776 NNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKL  855 (1092)
Q Consensus       776 ~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~I  855 (1092)
                      .+|...|++++|+|++++|++++ |+.|+||++.....  ...........|...|.+++|+|+ +++|++++.||.|++
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN--KSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSI  123 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC--CSCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc--eeeeecccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEE
Confidence            47999999999999999999999 99999999875221  111111112268899999999998 899999999999999


Q ss_pred             EECCCCc--eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEE
Q 001366          856 WDACTGQ--TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       856 WD~~tg~--~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      ||+.+++  ....+..|...|++++|+| ++..+++++.|+.|++||+++++.+..+. +...|.+++|+|++. +|+++
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  201 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTG  201 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred             EECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC-EEEEE
Confidence            9999887  6677888999999999999 88999999999999999999999888887 678899999999985 89999


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~ 1011 (1092)
                      +.|+.|++||+++.+. +..+ .|...+.+++|+ ++.+|++++.|+.|++||+.+.         ....+..|...|.+
T Consensus       202 ~~dg~i~~~d~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~v~~  270 (337)
T 1gxr_A          202 GLDNTVRSWDLREGRQ-LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---------DKYQLHLHESCVLS  270 (337)
T ss_dssp             ETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS---------CEEEECCCSSCEEE
T ss_pred             ecCCcEEEEECCCCce-Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---------CeEEEcCCccceeE
Confidence            9999999999998754 3333 478889999998 6778999999999999999842         24567889999999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1012 v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++|+|++++|++++.|+.|++|++..++.+...               .|...|.+++|+|++++|++++.||.|++|++
T Consensus       271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---------------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---------------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---------------cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            999999999999999999999999988776432               24678999999999999999999999999997


Q ss_pred             C
Q 001366         1092 V 1092 (1092)
Q Consensus      1092 v 1092 (1092)
                      +
T Consensus       336 ~  336 (337)
T 1gxr_A          336 I  336 (337)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.5e-34  Score=319.26  Aligned_cols=244  Identities=17%  Similarity=0.286  Sum_probs=219.7

Q ss_pred             eeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecC
Q 001366          823 VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN  902 (1092)
Q Consensus       823 ~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~  902 (1092)
                      ...+|...|.+++|+|+ +.+|++++.||+|+|||+.+++.+..+..|...|.+++|+| ++++|++|+.|++|++||+.
T Consensus         8 ~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~   85 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYN   85 (304)
T ss_dssp             EEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETT
T ss_pred             eecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECC
Confidence            45678999999999998 89999999999999999999999999999999999999999 89999999999999999999


Q ss_pred             CCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC--CCEEEEEECCCe
Q 001366          903 EKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD--SGTLVTASTDNK  979 (1092)
Q Consensus       903 ~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~--~~~L~Sgs~Dg~  979 (1092)
                      +++++..+. |...|.+++|+|++. +|++|+.|++|++||+++.......+.+|...|.+++|++  +..|++|+.|++
T Consensus        86 ~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           86 TGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            999998887 678899999999985 8999999999999999987666678899999999999984  468999999999


Q ss_pred             EEEEEcCCCCCCCCCCCceeEEE-cCCCCCeEEEEEec--CCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCcc
Q 001366          980 LKLWDLKRTSHTGPSTNACSLTF-SGHTNEKNFVGLST--ADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKE 1056 (1092)
Q Consensus       980 I~vWDl~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~sp--dg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~ 1056 (1092)
                      |++||++..        .+...+ .+|...+..++|+|  ++.+|++|+.|++|++||+..++++..+            
T Consensus       165 v~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~------------  224 (304)
T 2ynn_A          165 VKVWSLGQS--------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL------------  224 (304)
T ss_dssp             EEEEETTCS--------SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE------------
T ss_pred             EEEEECCCC--------CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee------------
Confidence            999999742        223333 46778899999987  6789999999999999999988776654            


Q ss_pred             ccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1057 TDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1057 ~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                        .+|...|.+++|+|++.+|++|+.||.|+||++
T Consensus       225 --~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          225 --EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS  257 (304)
T ss_dssp             --ECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             --CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence              367889999999999999999999999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.5e-34  Score=329.33  Aligned_cols=303  Identities=13%  Similarity=0.125  Sum_probs=252.0

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecC---CC---CEEEEE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNY---IK---NYLASA  847 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~---~~LaSg  847 (1092)
                      .+.+|...|++++|+|  ++||+|+.|++|+||++...... ..........+|...|.+++|+|+   .+   .+|+++
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            5779999999999998  89999999999999999763211 111233445679999999999985   36   799999


Q ss_pred             ECCCcEEEEECCCCce-----EEEeecc-----CccEEEEEEe----cCCCCE-EEEEeCCCcEEEEecCC------Cce
Q 001366          848 DYDGVVKLWDACTGQT-----VSHYIEH-----EKRAWSVDFS----QVHPTK-LASGSDDCSVKLWNINE------KNS  906 (1092)
Q Consensus       848 s~DgtV~IWD~~tg~~-----i~~l~~h-----~~~V~sv~fs----p~~~~~-laSgs~Dg~I~iWDl~~------~~~  906 (1092)
                      +.||+|++||+.+++.     +..+..|     ...|++++|+    | ++.. |++|+.|+.|++||+++      ++.
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  166 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLT  166 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccce
Confidence            9999999999998887     8889888     5899999999    8 7888 99999999999999998      777


Q ss_pred             ee-----eEe--------cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecC---C---CCCeEEEEEc-
Q 001366          907 LA-----TIK--------NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG---H---EKAVSYVKFL-  966 (1092)
Q Consensus       907 l~-----~l~--------~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~---H---~~~V~~v~fs-  966 (1092)
                      +.     .+.        +...|.+++|+|++  +|++|+.|+.|++||+++.+ ++..+..   |   ...|.+++|+ 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~~~  243 (397)
T 1sq9_A          167 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSVKFSP  243 (397)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc-eeEEEeccccccccCCccceEEECC
Confidence            66     664        46789999999998  89999999999999999865 4667777   9   9999999998 


Q ss_pred             CCCEEEEEECC---CeEEEEEcCCCCCCCCCCCceeEEEcC-------------CCCCeEEEEEecCCCEEEEEecCCcE
Q 001366          967 DSGTLVTASTD---NKLKLWDLKRTSHTGPSTNACSLTFSG-------------HTNEKNFVGLSTADGYIACGSESNEV 1030 (1092)
Q Consensus       967 ~~~~L~Sgs~D---g~I~vWDl~~~~~~~~~~~~~~~~l~~-------------h~~~V~~v~~spdg~~lasgs~Dg~I 1030 (1092)
                      ++.+|++++.|   +.|++||++        ...++..+.+             |...|++++|+|++.+|++|+.|+.|
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  315 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETE--------FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  315 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETT--------TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             CCCEEEEEecCCCCceEEEEECC--------CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence            67889999999   999999998        3566788888             99999999999999999999999999


Q ss_pred             EEEeCCCCCceeeeeccc------cCCCCCc-cccCCCCCCEEEEEEeCCC----------CEEEEEecCCeEEEEEc
Q 001366         1031 YAYHRSLPMPITSYKFGS------IDPISGK-ETDDDNGLFVSSVCWRRRS----------DMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1031 ~Iwd~~~~~~i~~~~~~~------~~~i~~~-~~~~~h~~~V~sva~spd~----------~~Lasgs~DG~V~vW~l 1091 (1092)
                      +|||+..++.+..+....      .+...+. .....|...|++++|+|++          .+|++|+.||.|+||++
T Consensus       316 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          316 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             EEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence            999999998888776210      0000110 1123348899999999998          79999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.9e-34  Score=332.31  Aligned_cols=291  Identities=14%  Similarity=0.077  Sum_probs=229.8

Q ss_pred             ccchhhhhhccccccCCCCcE--EeEc------CCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeC
Q 001366          728 DRENLFLAQQDQEIQNPTDRL--GAFF------DGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGV  799 (1092)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~l--~~~~------D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~  799 (1092)
                      .|+..+.++.    ++|++.+  +++.      |+.+++|+.........+.. ...+|...|++++|+|++. +++++.
T Consensus        40 ~H~~~V~~v~----fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~d~~-~l~~s~  113 (357)
T 4g56_B           40 CMEVQIGAVR----YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT-AGVQTEAGVTDVAWVSEKG-ILVASD  113 (357)
T ss_dssp             CCCSEEEEEE----ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-EEEECSSCEEEEEEETTTE-EEEEET
T ss_pred             cccCCEEEEE----ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-ccCCCCCCEEEEEEcCCCC-EEEEEC
Confidence            4555555544    4677655  3443      77788887655433322221 2346888999999999985 556788


Q ss_pred             CCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEE
Q 001366          800 SKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDF  879 (1092)
Q Consensus       800 D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~f  879 (1092)
                      |++|+|||+.....   .........+|...|.+++|+|+ +++|++|+.||+|+|||+.+++++..+.+|...|++++|
T Consensus       114 dg~v~lWd~~~~~~---~~~~~~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~  189 (357)
T 4g56_B          114 SGAVELWEILEKES---LLVNKFAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAA  189 (357)
T ss_dssp             TSCEEEC-----------CCCCEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCEEEEeeccccce---eEEEeeccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            99999999875221   11122344578999999999998 899999999999999999999999999999999999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEecCCCceeeeEe---cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCC
Q 001366          880 SQVHPTKLASGSDDCSVKLWNINEKNSLATIK---NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGH  956 (1092)
Q Consensus       880 sp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~---~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H  956 (1092)
                      ++....++++++.|++|++||+++++++..+.   +...+.+++|+|++..+|++|+.|+.|++||+++++ .+..+.+|
T Consensus       190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-~~~~~~~~  268 (357)
T 4g56_B          190 CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-SAQTSAVH  268 (357)
T ss_dssp             CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-GCEEECCC
T ss_pred             ccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc-EeEEEecc
Confidence            99555689999999999999999998877665   456799999999987899999999999999999876 46788999


Q ss_pred             CCCeEEEEEcC-C-CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEec-CCCEEEEEecCCcEEEE
Q 001366          957 EKAVSYVKFLD-S-GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLST-ADGYIACGSESNEVYAY 1033 (1092)
Q Consensus       957 ~~~V~~v~fs~-~-~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~I~Iw 1033 (1092)
                      ...|++++|++ + .+|++|+.|++|+|||++        .+.++. ..+|...|++++|+| ++.+||+||.|++|++|
T Consensus       269 ~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~--------~~~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          269 SQNITGLAYSYHSSPFLASISEDCTVAVLDAD--------FSEVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCEEEECTT--------SCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC--------CCcEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence            99999999983 3 478999999999999998        344444 458999999999999 78999999999999999


Q ss_pred             eCCCC
Q 001366         1034 HRSLP 1038 (1092)
Q Consensus      1034 d~~~~ 1038 (1092)
                      ++...
T Consensus       340 ~~~~~  344 (357)
T 4g56_B          340 HLPSE  344 (357)
T ss_dssp             ECC--
T ss_pred             ECCCC
Confidence            98654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.1e-34  Score=333.98  Aligned_cols=317  Identities=13%  Similarity=0.109  Sum_probs=254.8

Q ss_pred             CcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeee
Q 001366          746 DRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEM  825 (1092)
Q Consensus       746 ~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~  825 (1092)
                      ..+.++.|+.+++|+....+...     .+..| ..+....|++++++||+|+.|+.|+|||+...       .......
T Consensus        70 ~l~~~~~d~~v~i~d~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~  136 (420)
T 3vl1_A           70 HLYKARLDGHDFLFNTIIRDGSK-----MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN-------LQREIDQ  136 (420)
T ss_dssp             TEEEEEETTEEEEEECCSEETTT-----TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC-------EEEEETT
T ss_pred             eEEEEEcCCcEEEEEecccceee-----EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc-------ceeeecc
Confidence            34677899999999976543322     23344 45666688999999999999999999998641       1222234


Q ss_pred             cCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 001366          826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN  905 (1092)
Q Consensus       826 ~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~  905 (1092)
                      +|...|.+++|+|+ +.+|++|+.||+|++||+.+++.+..+.+|...|++++|+| ++..|++|+.|++|++||+++++
T Consensus       137 ~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          137 AHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             SSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTE
T ss_pred             cccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCc
Confidence            78999999999998 88999999999999999999999999999999999999999 89999999999999999999999


Q ss_pred             eeeeEec----CCceEE---------------------EEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCe
Q 001366          906 SLATIKN----IANVCC---------------------VQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAV  960 (1092)
Q Consensus       906 ~l~~l~~----~~~V~s---------------------l~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V  960 (1092)
                      ++..+..    ...|.+                     ++|+|++ .+|++|+.||.|++||+++.+.......+|...|
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  293 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSC  293 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCE
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCc
Confidence            9888862    233444                     4557777 5899999999999999998876666667799999


Q ss_pred             EEEEEc-CCC-EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC-CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCC
Q 001366          961 SYVKFL-DSG-TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG-HTNEKNFVGLSTADGYIACGSESNEVYAYHRSL 1037 (1092)
Q Consensus       961 ~~v~fs-~~~-~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~ 1037 (1092)
                      .+++|+ ++. +|++|+.||.|++||+++..       .++..+.+ |...++++. ++++.+|++|+.|+.|++|++..
T Consensus       294 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPE-------CPVGEFLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTT-------SCSEEEEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECC
T ss_pred             eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-------CchhhhhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccC
Confidence            999999 445 89999999999999998532       33566666 677788774 45788999999999999999876


Q ss_pred             CCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCC---EEEEEecCCeEEEEEc
Q 001366         1038 PMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD---MVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1038 ~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~---~Lasgs~DG~V~vW~l 1091 (1092)
                      +.......     ..........|...|.+++|+|++.   .|++++.+|.+.+|++
T Consensus       366 ~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~  417 (420)
T 3vl1_A          366 PESERPAI-----EFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL  417 (420)
T ss_dssp             TTCCSCEE-----CTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred             CCCCccce-----eccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence            43222111     1112223456778899999999999   7888889999999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2e-33  Score=321.43  Aligned_cols=299  Identities=15%  Similarity=0.127  Sum_probs=243.2

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEE
Q 001366          776 NNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKL  855 (1092)
Q Consensus       776 ~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~I  855 (1092)
                      ..|..+|++++|+|++++||+|+.|+.|+|||+....     ........+|...|.+++|+|+ +++|++++.||+|++
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~v   78 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYV   78 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-----EEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEE
Confidence            4589999999999999999999999999999987521     1123344578999999999997 899999999999999


Q ss_pred             EECCCCceEEE--eeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce---eeeEe--cCCceEEEEEccCCCeE
Q 001366          856 WDACTGQTVSH--YIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS---LATIK--NIANVCCVQFSAHSSHL  928 (1092)
Q Consensus       856 WD~~tg~~i~~--l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~---l~~l~--~~~~V~sl~fsp~~~~~  928 (1092)
                      ||+.+++....  +..|...|.+++|+| ++.+|++|+.|+.|++||++.+..   ...+.  +...|.+++|+|++. +
T Consensus        79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  156 (372)
T 1k8k_C           79 WTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-L  156 (372)
T ss_dssp             EEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-E
T ss_pred             EECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-E
Confidence            99988875444  467999999999999 889999999999999999998774   23332  567899999999985 8


Q ss_pred             EEEEECCCeEEEEEcCC-----------------CCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCC
Q 001366          929 LAFGSADYRTYCYDLRN-----------------ARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSH  990 (1092)
Q Consensus       929 latgs~Dg~I~vwDlr~-----------------~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~  990 (1092)
                      |++|+.|+.|++||++.                 ....+..+.+|...|.+++|+ ++.+|++++.|+.|++||++    
T Consensus       157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----  232 (372)
T 1k8k_C          157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD----  232 (372)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG----
T ss_pred             EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC----
Confidence            99999999999999752                 223567778999999999998 66799999999999999998    


Q ss_pred             CCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCC--CCc--eeeeec---------------c--cc
Q 001366          991 TGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSL--PMP--ITSYKF---------------G--SI 1049 (1092)
Q Consensus       991 ~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~--~~~--i~~~~~---------------~--~~ 1049 (1092)
                          .+.++..+..|...|++++|+|++.+|++| .|+.|++|+...  +..  +.....               .  ..
T Consensus       233 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (372)
T 1k8k_C          233 ----KKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK  307 (372)
T ss_dssp             ----GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred             ----CCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence                456788999999999999999999988888 899999999877  421  111000               0  00


Q ss_pred             CCCCC------ccccCCCCCCEEEEEEe-CCC---CEEEEEecCCeEEEEEc
Q 001366         1050 DPISG------KETDDDNGLFVSSVCWR-RRS---DMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1050 ~~i~~------~~~~~~h~~~V~sva~s-pd~---~~Lasgs~DG~V~vW~l 1091 (1092)
                      .....      .....+|...|++++|. +++   .+|+||+.||.|+||++
T Consensus       308 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          308 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence            00000      12235899999999977 566   99999999999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-34  Score=323.46  Aligned_cols=298  Identities=17%  Similarity=0.183  Sum_probs=225.8

Q ss_pred             hhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccc--eEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 001366          725 LLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKF--EVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKK  802 (1092)
Q Consensus       725 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~--~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~  802 (1092)
                      .+.+|...+.++.+    +++-.++++.|+++++|++...  .....+.   ..+|...|++++|+|++++||+|+.|++
T Consensus         9 ~~~~h~~~v~~~~~----s~~~las~~~D~~i~lw~~~~~~~~~~~~~~---~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            9 SLKLYKEKIWSFDF----SQGILATGSTDRKIKLVSVKYDDFTLIDVLD---ETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             EEECCSSCEEEEEE----ETTEEEEEESSSCEEEEECSSSCCEEEEEEC---TTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeccCCCceeeecc----CCCEEEEEcCCCEEEEEEecCCCeEEEEEEe---cCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            45667766655433    4554557889999999998642  2222111   1249999999999999999999999999


Q ss_pred             EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC----CceEEEeeccCccEEEEE
Q 001366          803 IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT----GQTVSHYIEHEKRAWSVD  878 (1092)
Q Consensus       803 I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t----g~~i~~l~~h~~~V~sv~  878 (1092)
                      |+||++.................+|...|.+++|+|+ +.+|++|+.|++|+|||+..    .+++..+.+|...|.+++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            9999985321111111223345679999999999998 89999999999999999943    256788899999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEecCCC--ceeeeEe-cCCceEEEEEccCC-CeEEEEEECCCeEEEEEcCCCC-------
Q 001366          879 FSQVHPTKLASGSDDCSVKLWNINEK--NSLATIK-NIANVCCVQFSAHS-SHLLAFGSADYRTYCYDLRNAR-------  947 (1092)
Q Consensus       879 fsp~~~~~laSgs~Dg~I~iWDl~~~--~~l~~l~-~~~~V~sl~fsp~~-~~~latgs~Dg~I~vwDlr~~~-------  947 (1092)
                      |+| ++.+|++|+.|++|++||+.++  +++..+. |...|.+++|+|++ ..+|++|+.|++|++||++...       
T Consensus       161 ~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~  239 (330)
T 2hes_X          161 WHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW  239 (330)
T ss_dssp             ECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred             ECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence            999 8899999999999999999876  5677776 67889999999983 2489999999999999997542       


Q ss_pred             cceEEecC-CCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeE-EEcCCCC-CeEEEEEec--CCCEEE
Q 001366          948 APWCVLAG-HEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSL-TFSGHTN-EKNFVGLST--ADGYIA 1022 (1092)
Q Consensus       948 ~~~~~l~~-H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~-~l~~h~~-~V~~v~~sp--dg~~la 1022 (1092)
                      .....+.+ |...|.+++|++++.|++++.||+|+|||.....      ..... .+.+|.. .|++++|+|  ++.+||
T Consensus       240 ~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la  313 (330)
T 2hes_X          240 VCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE------WKVFAKRALCHGVYEINVVKWLELNGKTILA  313 (330)
T ss_dssp             EEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE------EEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred             EEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc------eEEEeccccccccceEEEEEEecCCCceEEE
Confidence            12334444 9999999999988899999999999999987321      02222 3357887 899999999  688999


Q ss_pred             EEecCCcEEEEeCCC
Q 001366         1023 CGSESNEVYAYHRSL 1037 (1092)
Q Consensus      1023 sgs~Dg~I~Iwd~~~ 1037 (1092)
                      +||.|++|+||++..
T Consensus       314 s~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          314 TGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEETTSEEEEEEC--
T ss_pred             EecCCCcEEEEEecc
Confidence            999999999999753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-33  Score=320.06  Aligned_cols=304  Identities=18%  Similarity=0.191  Sum_probs=234.9

Q ss_pred             hhhccch-hhhhhccccccCCCCc--EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001366          725 LLRDREN-LFLAQQDQEIQNPTDR--LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSK  801 (1092)
Q Consensus       725 ~l~~~~~-~~~~~~~~~~~~~~~~--l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~  801 (1092)
                      .+++|.. .+..+.    ++|++.  ++++.|+++++|+.........  .....+|...|++++|+|+|++||+|+.|+
T Consensus        10 ~~~~h~~~~v~~l~----~sp~g~~las~~~D~~i~iw~~~~~~~~~~--~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A           10 RVPAHPDSRCWFLA----WNPAGTLLASCGGDRRIRIWGTEGDSWICK--SVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             EECCSTTSCEEEEE----ECTTSSCEEEEETTSCEEEEEEETTEEEEE--EEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eecCCCCCcEEEEE----ECCCCCEEEEEcCCCeEEEEEcCCCcceee--eeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            3445544 343332    455553  4678999999999765433211  112468999999999999999999999999


Q ss_pred             cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc---eEEEeeccCccEEEEE
Q 001366          802 KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ---TVSHYIEHEKRAWSVD  878 (1092)
Q Consensus       802 ~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~---~i~~l~~h~~~V~sv~  878 (1092)
                      +|+||++....     ........+|...|.+++|+|+ +++|++|+.|++|++||+.++.   ++..+.+|...|.+++
T Consensus        84 ~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (345)
T 3fm0_A           84 TTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV  157 (345)
T ss_dssp             CEEEEEECCC------EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred             cEEEEEccCCC-----eEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence            99999986421     1223345679999999999998 8999999999999999998763   5677889999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEecCCCce--eeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc-------
Q 001366          879 FSQVHPTKLASGSDDCSVKLWNINEKNS--LATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA-------  948 (1092)
Q Consensus       879 fsp~~~~~laSgs~Dg~I~iWDl~~~~~--l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~-------  948 (1092)
                      |+| ++.+|++|+.|++|++||++++..  ..++. |...|.+++|+|++. +|++|+.|++|++||......       
T Consensus       158 ~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~  235 (345)
T 3fm0_A          158 WHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACS  235 (345)
T ss_dssp             ECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred             ECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceee
Confidence            999 889999999999999999988753  34555 678899999999995 899999999999999753221       


Q ss_pred             -------ceEEecC-CCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCc-eeEEEcCCCCCeEEEEEecCC
Q 001366          949 -------PWCVLAG-HEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNA-CSLTFSGHTNEKNFVGLSTAD 1018 (1092)
Q Consensus       949 -------~~~~l~~-H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~-~~~~l~~h~~~V~~v~~spdg 1018 (1092)
                             .+..+.+ |...|.+++|+ ++..|++++.|+.|++|+............. ......+|...|++++|+|++
T Consensus       236 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~  315 (345)
T 3fm0_A          236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE  315 (345)
T ss_dssp             ---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred             ccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence                   1234444 88999999999 6778999999999999999754322111111 122345899999999999997


Q ss_pred             -CEEEEEecCCcEEEEeCCCCCcee
Q 001366         1019 -GYIACGSESNEVYAYHRSLPMPIT 1042 (1092)
Q Consensus      1019 -~~lasgs~Dg~I~Iwd~~~~~~i~ 1042 (1092)
                       .+||+||.||+|++|+...+++..
T Consensus       316 ~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          316 PGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             TTEEEEEETTSCEEEEEECC-----
T ss_pred             ceEEEEcCCCCcEEEEEecCCCCcc
Confidence             499999999999999988776544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.1e-33  Score=324.69  Aligned_cols=285  Identities=16%  Similarity=0.170  Sum_probs=231.6

Q ss_pred             ecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          775 FNNSANVICSISFDRDE-DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg-~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      +.+|...|++++|+|++ ++||+|+.|+.|+|||+....     ........+|...|.+++|+|+++.+|++++.|++|
T Consensus        69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-----KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-----CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-----cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            56899999999999999 999999999999999987521     111111236899999999999548999999999999


Q ss_pred             EEEECCCCceEEEeecc---CccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEE
Q 001366          854 KLWDACTGQTVSHYIEH---EKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLL  929 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h---~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~l  929 (1092)
                      ++||+.+ ..+..+..|   ...|.+++|+| ++..|++|+.|+.|++||++ ++++..+. +...|.+++|+|++..+|
T Consensus       144 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l  220 (383)
T 3ei3_B          144 TLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLM  220 (383)
T ss_dssp             EEEETTS-CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEE
T ss_pred             EEEECCC-CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEE
Confidence            9999985 555566544   47899999999 88999999999999999994 67777776 678899999999996699


Q ss_pred             EEEECCCeEEEEEcCCCC---cceEEecCCCCCeEEEEEcC--CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC
Q 001366          930 AFGSADYRTYCYDLRNAR---APWCVLAGHEKAVSYVKFLD--SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG 1004 (1092)
Q Consensus       930 atgs~Dg~I~vwDlr~~~---~~~~~l~~H~~~V~~v~fs~--~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~ 1004 (1092)
                      ++|+.|+.|++||+++.+   ..+..+ +|...|.+++|++  +.+|++++.|+.|++||+++..        +...+.+
T Consensus       221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~  291 (383)
T 3ei3_B          221 ATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS--------KPDQIII  291 (383)
T ss_dssp             EEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT--------SCSEEEE
T ss_pred             EEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc--------ccccccc
Confidence            999999999999999743   233444 7999999999985  6789999999999999998543        2233333


Q ss_pred             C-------C----------CCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEE
Q 001366         1005 H-------T----------NEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSS 1067 (1092)
Q Consensus      1005 h-------~----------~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~s 1067 (1092)
                      |       .          ..+..++|+|++.+  +|+.|+.|+|||+.+++.+..+..            ..|...+..
T Consensus       292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~------------~~~~~~~~~  357 (383)
T 3ei3_B          292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD------------PNAAGIISL  357 (383)
T ss_dssp             CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB------------TTBCSCCCE
T ss_pred             ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC------------CCCCceEEE
Confidence            2       2          23444667777766  778999999999999988776541            234667888


Q ss_pred             EEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1068 VCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1068 va~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++|+|++.+|++|+ ||.|+||++
T Consensus       358 ~~~s~~g~~l~s~s-d~~i~iw~~  380 (383)
T 3ei3_B          358 NKFSPTGDVLASGM-GFNILIWNR  380 (383)
T ss_dssp             EEECTTSSEEEEEE-TTEEEEEEC
T ss_pred             EEEecCccEEEEec-CCcEEEEec
Confidence            89999999999997 999999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.6e-34  Score=323.14  Aligned_cols=304  Identities=15%  Similarity=0.231  Sum_probs=239.7

Q ss_pred             ecCCCCCEEEEEEcCCCCEE-EEEeC---CCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCC--CCEEEEEE
Q 001366          775 FNNSANVICSISFDRDEDHF-AAAGV---SKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI--KNYLASAD  848 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~l-atgg~---D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~LaSgs  848 (1092)
                      +.+|...|++++|+|++..+ ++|+.   |+.|+||++....      .......+|...|.+++|+|+.  +.+|++|+
T Consensus        14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~   87 (357)
T 3i2n_A           14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD------LKLLREIEKAKPIKCGTFGATSLQQRYLATGD   87 (357)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS------EEEEEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred             ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc------ccceeeecccCcEEEEEEcCCCCCCceEEEec
Confidence            45799999999999999755 45555   8999999987521      1223344789999999999974  68999999


Q ss_pred             CCCcEEEEECCCCc-eEEEeeccCccEEEEEE------ecCCCCEEEEEeCCCcEEEEecCCCc-eeeeEec-----CCc
Q 001366          849 YDGVVKLWDACTGQ-TVSHYIEHEKRAWSVDF------SQVHPTKLASGSDDCSVKLWNINEKN-SLATIKN-----IAN  915 (1092)
Q Consensus       849 ~DgtV~IWD~~tg~-~i~~l~~h~~~V~sv~f------sp~~~~~laSgs~Dg~I~iWDl~~~~-~l~~l~~-----~~~  915 (1092)
                      .||.|++||+.+++ .+..+.+|...|.+++|      +| ++..|++|+.|+.|++||++++. .+..+..     ...
T Consensus        88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD  166 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred             CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence            99999999999988 88899999999999966      45 78899999999999999999887 6777652     237


Q ss_pred             eEEEE----EccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC----CCEEEEEECCCeEEEEEcCC
Q 001366          916 VCCVQ----FSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD----SGTLVTASTDNKLKLWDLKR  987 (1092)
Q Consensus       916 V~sl~----fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~----~~~L~Sgs~Dg~I~vWDl~~  987 (1092)
                      +.+++    |+|++. ++++|+.|+.|++||+++.+.  .....|...|.+++|++    +.+|++++.||.|++||+++
T Consensus       167 v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          167 CWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             EEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             eEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence            88998    678885 999999999999999998764  34467899999999984    67899999999999999984


Q ss_pred             CCCCCCCCCceeEEEcCCCCCeEEEEEecCCC-EEEEEecCCcEEEEeCCCCCceeeeec-cccCCCC----CccccCCC
Q 001366          988 TSHTGPSTNACSLTFSGHTNEKNFVGLSTADG-YIACGSESNEVYAYHRSLPMPITSYKF-GSIDPIS----GKETDDDN 1061 (1092)
Q Consensus       988 ~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~I~Iwd~~~~~~i~~~~~-~~~~~i~----~~~~~~~h 1061 (1092)
                      ....   .......+.+|...|++++|+|++. +|++|+.||.|++|++..+........ +......    ......+|
T Consensus       244 ~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  320 (357)
T 3i2n_A          244 QHPT---KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS  320 (357)
T ss_dssp             EETT---TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred             CCcc---cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence            3211   0111123448999999999999998 899999999999999876654322110 0000000    11234578


Q ss_pred             CCCEEEEEEeCCCCEEE-EEecCCeEEEEEc
Q 001366         1062 GLFVSSVCWRRRSDMVV-AANSSGCIKVLQM 1091 (1092)
Q Consensus      1062 ~~~V~sva~spd~~~La-sgs~DG~V~vW~l 1091 (1092)
                      ...|++++|+|++.+|+ +++.||.|+||++
T Consensus       321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~  351 (357)
T 3i2n_A          321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIV  351 (357)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             CCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence            89999999999999998 8999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-33  Score=307.74  Aligned_cols=277  Identities=17%  Similarity=0.244  Sum_probs=239.0

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|...|++++| |++.+|++|+.|+.|+|||+..       .........|...|.+++|+|+ +.+|++++.||.|
T Consensus        13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i   83 (313)
T 3odt_A           13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD-------QWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTMI   83 (313)
T ss_dssp             EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS-------SEEEEEEEECSSCEEEEEEETT-TTEEEEEETTSCE
T ss_pred             HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-------CEEEEEeecCCccEEEEEECCC-CCEEEEecCCCeE
Confidence            46799999999999 9999999999999999999865       2233445678999999999998 8999999999999


Q ss_pred             EEEECCCC---ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEE
Q 001366          854 KLWDACTG---QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLL  929 (1092)
Q Consensus       854 ~IWD~~tg---~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~l  929 (1092)
                      ++|++...   +.+..+.+|...|.+++|.   +..+++++.|+.|++||  .+..+..+. +...+.++.|+|....++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             EEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             EEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence            99998764   5677888999999999994   57999999999999999  566666666 678899999999333599


Q ss_pred             EEEECCCeEEEEEcCCCCcceEEecC-CCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCC
Q 001366          930 AFGSADYRTYCYDLRNARAPWCVLAG-HEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNE 1008 (1092)
Q Consensus       930 atgs~Dg~I~vwDlr~~~~~~~~l~~-H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~ 1008 (1092)
                      ++++.|+.|++||..   .....+.. |...|.+++|++++.+++++.|+.|++||++        .+.++..+.+|...
T Consensus       159 ~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~--------~~~~~~~~~~~~~~  227 (313)
T 3odt_A          159 LTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMH--------TGDVLRTYEGHESF  227 (313)
T ss_dssp             EEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETT--------TCCEEEEEECCSSC
T ss_pred             EEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECC--------chhhhhhhhcCCce
Confidence            999999999999943   33456666 9999999999977679999999999999998        45678889999999


Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEE
Q 001366         1009 KNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088 (1092)
Q Consensus      1009 V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~v 1088 (1092)
                      |++++|+|++ .|++|+.|+.|++||+..++.+..+.              .|...|.+++|+|++. +++++.||.|++
T Consensus       228 i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~-~~~~~~dg~i~i  291 (313)
T 3odt_A          228 VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT--------------LPAISIWSVDCMSNGD-IIVGSSDNLVRI  291 (313)
T ss_dssp             EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE--------------CSSSCEEEEEECTTSC-EEEEETTSCEEE
T ss_pred             EEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe--------------ccCceEEEEEEccCCC-EEEEeCCCcEEE
Confidence            9999999999 68899999999999999888776654              4566899999999998 667999999999


Q ss_pred             EEc
Q 001366         1089 LQM 1091 (1092)
Q Consensus      1089 W~l 1091 (1092)
                      |++
T Consensus       292 w~~  294 (313)
T 3odt_A          292 FSQ  294 (313)
T ss_dssp             EES
T ss_pred             EeC
Confidence            996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.9e-33  Score=315.76  Aligned_cols=293  Identities=15%  Similarity=0.173  Sum_probs=234.2

Q ss_pred             hhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKI  803 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I  803 (1092)
                      .++++|.+.+..+.+.. ..+.-.++++.|+++++|++.............+.+|...|.+++|+|++.+|++|+.|++|
T Consensus        11 ~~l~gH~~~V~~l~~~~-~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEECCCSSCEEEEEECS-SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEccccceEEEEEccC-CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            45778888877664411 11233568899999999997532222122234577999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecC-
Q 001366          804 KIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQV-  882 (1092)
Q Consensus       804 ~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~-  882 (1092)
                      +|||+.+.       .......+|...|.+++|+|+ +.+|++|+.|++|++||+. ++++..+.+|...|.++.|.|. 
T Consensus        90 ~~wd~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A           90 RLWDVATG-------ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             EEEETTTT-------EEEEEEECCSSCEEEEEECTT-SCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-
T ss_pred             EEEECCCC-------CeeEEEccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCC
Confidence            99998752       223345689999999999998 8999999999999999985 6788889999999999999983 


Q ss_pred             ----CCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCC
Q 001366          883 ----HPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHE  957 (1092)
Q Consensus       883 ----~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~  957 (1092)
                          ++..+++|+.|++|++||+++.+....+. |...|.+++|+|++. +|++|+.|+.|++||+++.+. +..+.. .
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~  237 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKA-MYTLSA-Q  237 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEE-EEEEEC-C
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcE-EEEecC-C
Confidence                23489999999999999999988887776 678999999999995 999999999999999998753 455554 4


Q ss_pred             CCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEE--------cCCCCCeEEEEEecCCCEEEEEecCCc
Q 001366          958 KAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTF--------SGHTNEKNFVGLSTADGYIACGSESNE 1029 (1092)
Q Consensus       958 ~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l--------~~h~~~V~~v~~spdg~~lasgs~Dg~ 1029 (1092)
                      ..|.+++|++++.+++++.++.+++|++..        ...+..+        ..|...+.+++|+|+|++|++|+.|+.
T Consensus       238 ~~v~~~~~sp~~~~la~~~~~~i~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~  309 (319)
T 3frx_A          238 DEVFSLAFSPNRYWLAAATATGIKVFSLDP--------QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV  309 (319)
T ss_dssp             SCEEEEEECSSSSEEEEEETTEEEEEEETT--------EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEEeCc--------CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCce
Confidence            689999999555444445566799999973        2223333        235677999999999999999999999


Q ss_pred             EEEEeCCC
Q 001366         1030 VYAYHRSL 1037 (1092)
Q Consensus      1030 I~Iwd~~~ 1037 (1092)
                      |+||++.+
T Consensus       310 i~vWd~~t  317 (319)
T 3frx_A          310 IRVWQVMT  317 (319)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEee
Confidence            99999754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.1e-34  Score=337.25  Aligned_cols=287  Identities=16%  Similarity=0.174  Sum_probs=225.9

Q ss_pred             cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          776 NNSANVICSISFDR-DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       776 ~~h~~~V~sl~fsp-dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      ..|...|+||+|+| ++++||+|+.||+|+|||+....     ........+|.+.|++|+|+|.++.+|+|||.||+|+
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-----CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            36788999999999 56799999999999999987521     1111234579999999999986689999999999999


Q ss_pred             EEECCCCceEEEeec--cCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEE
Q 001366          855 LWDACTGQTVSHYIE--HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~--h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~lat  931 (1092)
                      |||+.++........  +...+.+++|+| ++.+|++|+.||+|++||++. +.+.++. |...|++++|+|++..+|++
T Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          191 LQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             EEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred             EeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEE
Confidence            999977654333333  334578999999 899999999999999999975 4555555 67889999999999889999


Q ss_pred             EECCCeEEEEEcCCCCcc--eEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCC
Q 001366          932 GSADYRTYCYDLRNARAP--WCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNE 1008 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~~~--~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~ 1008 (1092)
                      |+.|+.|++||+++.+..  +....+|...|++++|+ ++.+|++++.||+|+|||+.++        .+...+..|...
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~--------~~~~~~~~~~~~  340 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW--------DCPLGLIPHPHR  340 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS--------SSEEEECCCCCC
T ss_pred             ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC--------ccceEEeccccc
Confidence            999999999999976532  23346899999999999 6789999999999999999843        344444444321


Q ss_pred             ------eEEEEEecCCCEEEEEe------------cCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEE-E
Q 001366         1009 ------KNFVGLSTADGYIACGS------------ESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSV-C 1069 (1092)
Q Consensus      1009 ------V~~v~~spdg~~lasgs------------~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sv-a 1069 (1092)
                            +..+.|+|++.++++++            .++.|++||..+++.+..+.             .+|...|.++ +
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-------------~~~~~~v~s~~~  407 (435)
T 4e54_B          341 HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-------------DPESSGISSLNE  407 (435)
T ss_dssp             CCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-------------CSSCCCCCCEEE
T ss_pred             ccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-------------CCCCCcEEEEEE
Confidence                  23346667666666554            34679999999888776543             3466678887 6


Q ss_pred             EeCCCCEEEEEecCCeEEEEEc
Q 001366         1070 WRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1070 ~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |+|+|.+||+|+ |+.|+||++
T Consensus       408 fspdg~~lasg~-d~~i~iW~~  428 (435)
T 4e54_B          408 FNPMGDTLASAM-GYHILIWSQ  428 (435)
T ss_dssp             ECTTSSCEEEEC-SSEEEECCC
T ss_pred             ECCCCCEEEEEc-CCcEEEEEC
Confidence            999999999876 889999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-33  Score=321.89  Aligned_cols=286  Identities=15%  Similarity=0.214  Sum_probs=242.4

Q ss_pred             CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEc----CCCCCC-C--cccccce------eeecCCCCeEEEEEecCCCC
Q 001366          777 NSANVICSISFDRDED-HFAAAGVSKKIKIFEF----NALFND-S--VDVYYPA------VEMSNRSKLSCVCWNNYIKN  842 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~-~latgg~D~~I~Iwd~----~~~~~~-~--~~~~~~~------~~~~h~~~V~~v~~sp~~~~  842 (1092)
                      .|...|++++|+|++. +||+|+.|+.|+||++    ...... .  .......      ...+|...|.+++|+|+ +.
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~  121 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-GN  121 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT-SS
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC-CC
Confidence            5678999999999999 9999999999999999    542100 0  0000000      01125779999999998 89


Q ss_pred             EEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecC-Cc------
Q 001366          843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI-AN------  915 (1092)
Q Consensus       843 ~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~-~~------  915 (1092)
                      +|++++.||.|++|| .+++.+..+.+|...|.+++|+| ++..|++++.|+.|++||+.+++.+..+... ..      
T Consensus       122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA  199 (425)
T ss_dssp             EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred             EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence            999999999999999 67888999999999999999999 8899999999999999999999988888743 33      


Q ss_pred             ---------eEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEc
Q 001366          916 ---------VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDL  985 (1092)
Q Consensus       916 ---------V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl  985 (1092)
                               +.+++|+|++  .+++++.|+.|++||+++.+ ++..+.+|...|.+++|+ ++.+|++++.|+.|++||+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  276 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT-PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG  276 (425)
T ss_dssp             ------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS-CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred             ccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc-eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence                     8999999986  68899999999999999875 467788999999999998 6679999999999999999


Q ss_pred             CCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCE
Q 001366          986 KRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFV 1065 (1092)
Q Consensus       986 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V 1065 (1092)
                      +        ...++..+.+|...|.+++|+|++ +|++++.|+.|++||+..++.+..+.              .|...|
T Consensus       277 ~--------~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--------------~~~~~i  333 (425)
T 1r5m_A          277 G--------NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI--------------VDGVPI  333 (425)
T ss_dssp             S--------SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE--------------CTTCCE
T ss_pred             C--------CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc--------------cCCccE
Confidence            8        345677888999999999999999 99999999999999998887776553              456789


Q ss_pred             EEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1066 SSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1066 ~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .+++|+|++.+|++++.||.|+||++
T Consensus       334 ~~~~~s~~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          334 FAGRISQDGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            99999999999999999999999986

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-34  Score=332.38  Aligned_cols=301  Identities=12%  Similarity=0.144  Sum_probs=226.8

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      .+..+|++++|+|++++||+|+.|+.|+||++....     ........+|...|.+++|+|+ +++|++++.||+|++|
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-----WKHARTFSDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVY   82 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-----EEECCCBCCCSSCEEEEEECTT-TCCEEEEETTSSEEEC
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-----eEEEEEEecCCceEEEEEEeCC-CCEEEEEeCCCeEEEE
Confidence            466789999999999999999999999999987520     0222334578999999999998 8899999999999999


Q ss_pred             ECCCCc---eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc---eeeeEe--cCCceEEEEEccCCCeE
Q 001366          857 DACTGQ---TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN---SLATIK--NIANVCCVQFSAHSSHL  928 (1092)
Q Consensus       857 D~~tg~---~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~---~l~~l~--~~~~V~sl~fsp~~~~~  928 (1092)
                      |+.+++   ....+.+|...|++++|+| ++.+|++|+.|++|++||+++++   ....+.  |...|.+++|+|++. +
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~  160 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-L  160 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-E
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-E
Confidence            999887   6778889999999999999 88999999999999999999887   356665  678899999999985 9


Q ss_pred             EEEEECCCeEEEEEcCCCC-----------------cceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCC
Q 001366          929 LAFGSADYRTYCYDLRNAR-----------------APWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSH  990 (1092)
Q Consensus       929 latgs~Dg~I~vwDlr~~~-----------------~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~  990 (1092)
                      |++|+.|+.|++||++...                 .++..+ +|...|.+++|+ ++.+|++++.|++|++||+.+...
T Consensus       161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            9999999999999996321                 233344 899999999999 667899999999999999985321


Q ss_pred             CCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCC-c-eeeeeccccC-----------------C
Q 001366          991 TGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPM-P-ITSYKFGSID-----------------P 1051 (1092)
Q Consensus       991 ~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~-~-i~~~~~~~~~-----------------~ 1051 (1092)
                          ....+..+.+|...|++++|+|++.+|++|+.++.+ +|+..... . ..........                 .
T Consensus       240 ----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (377)
T 3dwl_C          240 ----PPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGP  314 (377)
T ss_dssp             ----CEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---
T ss_pred             ----cceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccc
Confidence                011267788999999999999999999999877766 66554221 0 1110000000                 0


Q ss_pred             C-------------------CCccccCCCCCCEEEEEEeCCC-C---EEEEEecCCeEEEEEc
Q 001366         1052 I-------------------SGKETDDDNGLFVSSVCWRRRS-D---MVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1052 i-------------------~~~~~~~~h~~~V~sva~spd~-~---~Lasgs~DG~V~vW~l 1091 (1092)
                      .                   ........|...|++|++.+.. .   .|+|||.||.|+||++
T Consensus       315 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          315 VSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            0                   0111223489999999977644 3   6999999999999986

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=5.7e-36  Score=337.19  Aligned_cols=243  Identities=14%  Similarity=0.092  Sum_probs=169.0

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|+|+||+|...      +..+|.|++...  ......+.++...+...+||||+.++.....+....       .. 
T Consensus        12 G~G~fG~Vy~~~~~------g~~VAvK~l~~~--~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~-------~~-   75 (303)
T 3hmm_A           12 GKGRFGEVWRGKWR------GEEVAVKIFSSR--EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW-------TQ-   75 (303)
T ss_dssp             EECSSSEEEEEEET------TEEEEEEEECGG--GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSS-------EE-
T ss_pred             eeCCCeEEEEEEEC------CEEEEEEEECcc--chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCc-------eE-
Confidence            44689999999763      456777766332  122223334555566779999999877655332110       00 


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhc--------CccccCCCCCCeEEccCCcEEE
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQ--------GVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~--------gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                          ..++||||+||+|.++|+..  .+++.+++.|+.|++.||+|||++        |||||||||+||||+.++.+||
T Consensus        76 ----~~lV~Ey~~~gsL~~~l~~~--~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki  149 (303)
T 3hmm_A           76 ----LWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI  149 (303)
T ss_dssp             ----EEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEE
T ss_pred             ----EEEEecCCCCCcHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEE
Confidence                01389999999999999765  578889999999999999999987        9999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++........                                                                 
T Consensus       150 ~DFGla~~~~~~~~~-----------------------------------------------------------------  164 (303)
T 3hmm_A          150 ADLGLAVRHDSATDT-----------------------------------------------------------------  164 (303)
T ss_dssp             CCCTTCEEEETTTTE-----------------------------------------------------------------
T ss_pred             EeCCCCccccCCCCc-----------------------------------------------------------------
Confidence            999999875411000                                                                 


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC------CCCccccchhhhHHHHH
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG------VCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~------~~t~~sDIwSLGvll~e  524 (1092)
                                                        ........+||++|||||++.+.      .|+.++|||||||+|||
T Consensus       165 ----------------------------------~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~E  210 (303)
T 3hmm_A          165 ----------------------------------IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE  210 (303)
T ss_dssp             ----------------------------------ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------eeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHH
Confidence                                              00111256899999999999764      47889999999999999


Q ss_pred             HcCCCCc-----------------HHHHHHHHHhccccCCCCCCCC------CChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          525 LFGRFDS-----------------ERALAAAMSDLRDRILPPSFLS------ENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       525 ll~~f~~-----------------~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      |+++.+.                 ..........+....+.|.++.      ..+.+.+|+.+||+.||++|||+.||++
T Consensus       211 l~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~  290 (303)
T 3hmm_A          211 IARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             HHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred             HHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence            9975110                 0011222222222222222221      1235679999999999999999999987


Q ss_pred             h
Q 001366          582 S  582 (1092)
Q Consensus       582 ~  582 (1092)
                      .
T Consensus       291 ~  291 (303)
T 3hmm_A          291 T  291 (303)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.4e-33  Score=322.00  Aligned_cols=290  Identities=10%  Similarity=0.088  Sum_probs=225.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCC-------cEEEEEcCCCCCCCcc---cccceeeecCCCCeEEEEEecCCCCEEEEE-
Q 001366          779 ANVICSISFDRDEDHFAAAGVSK-------KIKIFEFNALFNDSVD---VYYPAVEMSNRSKLSCVCWNNYIKNYLASA-  847 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~D~-------~I~Iwd~~~~~~~~~~---~~~~~~~~~h~~~V~~v~~sp~~~~~LaSg-  847 (1092)
                      ..||++++|+||+++||+||.+.       +|+||++.........   .........|...|.+++++.   +.+++| 
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~g~   90 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK---GIILVGC   90 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---TEEEEEC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC---CEEEEEE
Confidence            45899999999999999998643       5999998753221111   111122345778899998875   466655 


Q ss_pred             ----------ECCCcEEEEECCCCce-E---EEee-----ccCccEEEEEEecCCCCEEEE--EeCCCcEEEEecCCCce
Q 001366          848 ----------DYDGVVKLWDACTGQT-V---SHYI-----EHEKRAWSVDFSQVHPTKLAS--GSDDCSVKLWNINEKNS  906 (1092)
Q Consensus       848 ----------s~DgtV~IWD~~tg~~-i---~~l~-----~h~~~V~sv~fsp~~~~~laS--gs~Dg~I~iWDl~~~~~  906 (1092)
                                +.|+++++|++.+... +   ....     .+...+.+|+|+| +++++++  ++.|++|+|||+.++++
T Consensus        91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~  169 (365)
T 4h5i_A           91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTE  169 (365)
T ss_dssp             CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred             CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcE
Confidence                      4578899999876532 1   1111     2345688999999 8888764  45799999999999999


Q ss_pred             eeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcce-EEecCCCCCeEEEEEc-CCCEEEEEECCC----eE
Q 001366          907 LATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPW-CVLAGHEKAVSYVKFL-DSGTLVTASTDN----KL  980 (1092)
Q Consensus       907 l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~-~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg----~I  980 (1092)
                      +..+.+...|.+|+|+|+|. ++++++.+ .+.+|+..++.... ....+|...|.+++|+ ++..+++++.|+    .+
T Consensus       170 ~~~~~~~~~V~~v~fspdg~-~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i  247 (365)
T 4h5i_A          170 KFEIETRGEVKDLHFSTDGK-VVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL  247 (365)
T ss_dssp             EEEEECSSCCCEEEECTTSS-EEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred             EEEeCCCCceEEEEEccCCc-eEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence            99999999999999999995 88888755 56667666655432 3456788999999999 677889999887    68


Q ss_pred             EEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCC
Q 001366          981 KLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDD 1060 (1092)
Q Consensus       981 ~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~ 1060 (1092)
                      ++||+.....    .......+.+|...|++++|+|+|++||+|+.|++|+|||+.+++++..+.             .+
T Consensus       248 ~~~~~~~~~~----~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-------------~g  310 (365)
T 4h5i_A          248 TKISIKSGNT----SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK-------------QA  310 (365)
T ss_dssp             EEEEEETTEE----EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET-------------TS
T ss_pred             eeccccccee----cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec-------------Cc
Confidence            8999874221    112345678899999999999999999999999999999999988776543             57


Q ss_pred             CCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1061 NGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1061 h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |...|++|+|+||+++|||||.|++|+||+|
T Consensus       311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          311 HSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             SSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            8999999999999999999999999999997

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-33  Score=330.33  Aligned_cols=300  Identities=15%  Similarity=0.202  Sum_probs=234.5

Q ss_pred             cCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          776 NNSANVICSISFDR-DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       776 ~~h~~~V~sl~fsp-dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      .+|...|++++|+| ++++||+|+.|++|+|||+.......  .........|...|.+++|+|+ +.+|++|+.||+|+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~  136 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE--VYSSSLTYDCSSTVTQITMIPN-FDAFAVSSKDGQII  136 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--CCSCSEEEECSSCEEEEEECTT-SSEEEEEETTSEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--ccceeeeccCCCCEEEEEEeCC-CCEEEEEeCCCEEE
Confidence            68999999999999 99999999999999999986411110  1122334468999999999997 89999999999999


Q ss_pred             EEECC---CCceEEEeec------------cCccEEEEE--EecCCCCEEEEEeCCCcEEEEecCCCceeeeEe---cCC
Q 001366          855 LWDAC---TGQTVSHYIE------------HEKRAWSVD--FSQVHPTKLASGSDDCSVKLWNINEKNSLATIK---NIA  914 (1092)
Q Consensus       855 IWD~~---tg~~i~~l~~------------h~~~V~sv~--fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~---~~~  914 (1092)
                      +||+.   +++.+..+.+            +...+.++.  +++ ++.+|++|+.|++|++||+++++++..+.   +..
T Consensus       137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~  215 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG  215 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred             EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence            99994   6665554443            334455555  345 67899999999999999999999999887   467


Q ss_pred             ceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEec-CCCCCeEEEEEc-----CCCEEEEEECCCeEEEEEcCCC
Q 001366          915 NVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA-GHEKAVSYVKFL-----DSGTLVTASTDNKLKLWDLKRT  988 (1092)
Q Consensus       915 ~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~-~H~~~V~~v~fs-----~~~~L~Sgs~Dg~I~vWDl~~~  988 (1092)
                      .|++++|+|++. +|++|+.||.|++||+++.+ ++..+. +|...|.+++|+     ++.+|++|+.||+|++||+++.
T Consensus       216 ~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          216 AVSSICIDEECC-VLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             CEEEEEECTTSC-EEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred             ceEEEEECCCCC-EEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence            899999999985 99999999999999999865 445554 788899999775     2448999999999999999843


Q ss_pred             CCCCCCCCceeEEEcC--------------------------CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCcee
Q 001366          989 SHTGPSTNACSLTFSG--------------------------HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPIT 1042 (1092)
Q Consensus       989 ~~~~~~~~~~~~~l~~--------------------------h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~ 1042 (1092)
                              .++..+.+                          |...|++++|+ ++.+|++|+.|+.|++||+..++.+.
T Consensus       294 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          294 --------HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             --------EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             --------cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence                    33333332                          66678899999 77899999999999999999988777


Q ss_pred             eeecccc---------------------CCCCCc--cccCCCCCCEEEEEEeCC--CCEEEEEecCCeEEEEE
Q 001366         1043 SYKFGSI---------------------DPISGK--ETDDDNGLFVSSVCWRRR--SDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1043 ~~~~~~~---------------------~~i~~~--~~~~~h~~~V~sva~spd--~~~Lasgs~DG~V~vW~ 1090 (1092)
                      .+.-...                     +.....  .....|...|++|+|+++  +.+|++|+.||.|+||+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            6642100                     000000  122348899999999998  88999999999999995

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-32  Score=306.69  Aligned_cols=285  Identities=18%  Similarity=0.278  Sum_probs=241.3

Q ss_pred             hhhhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSK  801 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~  801 (1092)
                      ..+.+|...+.++.+    +|++  .++++.|+.+++|+....+...     .+.+|...|.+++|+|++++|++|+.|+
T Consensus        17 ~~~~gh~~~v~~~~~----s~~~~~l~s~~~dg~i~iw~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~~~d~   87 (312)
T 4ery_A           17 FTLAGHTKAVSSVKF----SPNGEWLASSSADKLIKIWGAYDGKFEK-----TISGHKLGISDVAWSSDSNLLVSASDDK   87 (312)
T ss_dssp             EEECCCSSCEEEEEE----CTTSSEEEEEETTSCEEEEETTTCCEEE-----EECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEcccCCcEEEEEE----CCCCCEEEEeeCCCeEEEEeCCCcccch-----hhccCCCceEEEEEcCCCCEEEEECCCC
Confidence            446677776665543    4544  3477899999999987665443     3568999999999999999999999999


Q ss_pred             cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEec
Q 001366          802 KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ  881 (1092)
Q Consensus       802 ~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp  881 (1092)
                      .|+|||+...       .......+|...|.+++|+|+ +.+|++|+.||+|++||+.+++.+..+..|...|.+++|+|
T Consensus        88 ~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  159 (312)
T 4ery_A           88 TLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR  159 (312)
T ss_dssp             EEEEEETTTC-------CEEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             EEEEEECCCC-------cEEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC
Confidence            9999998752       222345678999999999998 89999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCceeeeEe--cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCC
Q 001366          882 VHPTKLASGSDDCSVKLWNINEKNSLATIK--NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA  959 (1092)
Q Consensus       882 ~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~--~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~  959 (1092)
                       ++.+|++|+.|+.|++||+++++.+..+.  +...+.+++|+|++. +|++++.|+.|++||+++++ .+..+.+|...
T Consensus       160 -~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~  236 (312)
T 4ery_A          160 -DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGK-CLKTYTGHKNE  236 (312)
T ss_dssp             -TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTTE-EEEEECSSCCS
T ss_pred             -CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCc-EEEEEEecCCc
Confidence             88999999999999999999999887775  456799999999995 89999999999999999875 45677788765


Q ss_pred             eEEE--EEc--CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEe--cCCcEEEE
Q 001366          960 VSYV--KFL--DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGS--ESNEVYAY 1033 (1092)
Q Consensus       960 V~~v--~fs--~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs--~Dg~I~Iw 1033 (1092)
                      +.++  .|+  ++.+|++|+.||.|++||+.        ....+..+.+|...|.+++|+|++.+|++++  .|++|++|
T Consensus       237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W  308 (312)
T 4ery_A          237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--------TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW  308 (312)
T ss_dssp             SSCCCEEEECSSSCEEEECCTTSCEEEEETT--------TCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred             eEEEEEEEEeCCCcEEEEECCCCEEEEEECC--------CchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence            4332  333  56789999999999999998        4567889999999999999999999999987  69999999


Q ss_pred             eCC
Q 001366         1034 HRS 1036 (1092)
Q Consensus      1034 d~~ 1036 (1092)
                      +..
T Consensus       309 ~~d  311 (312)
T 4ery_A          309 KSD  311 (312)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-33  Score=328.34  Aligned_cols=283  Identities=16%  Similarity=0.294  Sum_probs=241.3

Q ss_pred             CEEEEEEcCCCC-EEEEE----------eCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEEC
Q 001366          781 VICSISFDRDED-HFAAA----------GVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADY  849 (1092)
Q Consensus       781 ~V~sl~fspdg~-~latg----------g~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~  849 (1092)
                      .|.+++|+|++. +||+|          +.|+.|+||++.....     ..+.....|...|.+++|+|+ +.+|++++.
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~   87 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS-----EKPIASLQVDSKFNDLDWSHN-NKIIAGALD   87 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG-----CSCSCCCCCSSCEEEEEECSS-SSCEEEEES
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC-----CcEEEEEecCCceEEEEECCC-CCeEEEEcc
Confidence            467799999987 99999          8999999999875211     122334468899999999998 889999999


Q ss_pred             CCcEEEEECCC----CceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc------eeeeE----ecCCc
Q 001366          850 DGVVKLWDACT----GQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN------SLATI----KNIAN  915 (1092)
Q Consensus       850 DgtV~IWD~~t----g~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~------~l~~l----~~~~~  915 (1092)
                      ||.|++||+.+    .+.+..+.+|...|++++|+|.++.+|++|+.|++|++||++++.      ....+    .+...
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence            99999999987    458888999999999999999448999999999999999999886      33333    36778


Q ss_pred             eEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCC------CCCeEEEEEcCC--CEEEEEECCC---eEEEEE
Q 001366          916 VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGH------EKAVSYVKFLDS--GTLVTASTDN---KLKLWD  984 (1092)
Q Consensus       916 V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H------~~~V~~v~fs~~--~~L~Sgs~Dg---~I~vWD  984 (1092)
                      |.+++|+|++..+|++++.|+.|++||+++.+. +..+..|      ...|.+++|++.  .+|++++.|+   .|++||
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d  246 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD  246 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence            999999999657999999999999999998754 4555555      789999999954  4899999999   999999


Q ss_pred             cCCCCCCCCCCCceeEEEc-CCCCCeEEEEEec-CCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCC
Q 001366          985 LKRTSHTGPSTNACSLTFS-GHTNEKNFVGLST-ADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNG 1062 (1092)
Q Consensus       985 l~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~sp-dg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~ 1062 (1092)
                      +++.       ..++..+. +|...|++++|+| ++.+|++|+.|+.|++||+.+++++..+.              .|.
T Consensus       247 ~~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~--------------~~~  305 (416)
T 2pm9_A          247 LRNA-------NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP--------------ARG  305 (416)
T ss_dssp             TTST-------TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE--------------CSS
T ss_pred             CCCC-------CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec--------------CCC
Confidence            9843       24456677 8999999999999 89999999999999999999888776653              567


Q ss_pred             CCEEEEEEeCCC-CEEEEEecCCeEEEEEc
Q 001366         1063 LFVSSVCWRRRS-DMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1063 ~~V~sva~spd~-~~Lasgs~DG~V~vW~l 1091 (1092)
                      ..|.+++|+|++ .+|++++.||.|+||++
T Consensus       306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~  335 (416)
T 2pm9_A          306 NWCFKTKFAPEAPDLFACASFDNKIEVQTL  335 (416)
T ss_dssp             SCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred             CceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence            789999999999 89999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-32  Score=307.02  Aligned_cols=253  Identities=17%  Similarity=0.277  Sum_probs=210.5

Q ss_pred             eecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC--CceEEEeeccCccEEEEEEecC-CCCEEEEEeCCCcEEEEe
Q 001366          824 EMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT--GQTVSHYIEHEKRAWSVDFSQV-HPTKLASGSDDCSVKLWN  900 (1092)
Q Consensus       824 ~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t--g~~i~~l~~h~~~V~sv~fsp~-~~~~laSgs~Dg~I~iWD  900 (1092)
                      ..+|...|.+++|+|+ +++||+|+.|++|+|||+.+  .+.+.++.+|...|++++|++. ++.+|+||+.|++|++||
T Consensus         5 ~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             CCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             ccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            4578999999999998 89999999999999999974  3678899999999999999863 478999999999999999


Q ss_pred             cCCCc--eeeeEe-cCCceEEEEEccC--CCeEEEEEECCCeEEEEEcCCCCc-ceEEecCCCCCeEEEEEcCC------
Q 001366          901 INEKN--SLATIK-NIANVCCVQFSAH--SSHLLAFGSADYRTYCYDLRNARA-PWCVLAGHEKAVSYVKFLDS------  968 (1092)
Q Consensus       901 l~~~~--~l~~l~-~~~~V~sl~fsp~--~~~~latgs~Dg~I~vwDlr~~~~-~~~~l~~H~~~V~~v~fs~~------  968 (1092)
                      +++++  .+..+. |...|.+++|+|+  + .+|++|+.|+.|++||+++... ....+.+|...|.+++|++.      
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            99874  445555 6788999999997  5 5899999999999999987632 24567899999999999853      


Q ss_pred             --------CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCC---CEEEEEecCCcEEEEeCCC
Q 001366          969 --------GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTAD---GYIACGSESNEVYAYHRSL 1037 (1092)
Q Consensus       969 --------~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg---~~lasgs~Dg~I~Iwd~~~ 1037 (1092)
                              .+|++|+.|++|+|||++....    ...+..++.+|...|++++|+|++   .+||+||.|++|+||+...
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~----~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQ----TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTT----EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCc----eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence                    5899999999999999984321    122567889999999999999985   7999999999999999876


Q ss_pred             CCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1038 PMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1038 ~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .........         .....|...|++++|+|++++||+++.||.|+||++
T Consensus       239 ~~~~~~~~~---------~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          239 EQGPWKKTL---------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             TTSCCEEEE---------SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             CCCccceee---------eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            431111000         011356788999999999999999999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-32  Score=312.68  Aligned_cols=296  Identities=15%  Similarity=0.183  Sum_probs=230.6

Q ss_pred             chhhhccchhhhhhccccc-cCC-C--CcEEeEcCCeEEEEEcccceEEe--eEEeeeecCCCCCEEEEEEcCCCCEEEE
Q 001366          723 NDLLRDRENLFLAQQDQEI-QNP-T--DRLGAFFDGLCKYARYSKFEVQG--MLRTGEFNNSANVICSISFDRDEDHFAA  796 (1092)
Q Consensus       723 ~~~l~~~~~~~~~~~~~~~-~~~-~--~~l~~~~D~~~k~w~~~~~~~~~--~l~~~~l~~h~~~V~sl~fspdg~~lat  796 (1092)
                      ..++++|.+.+..+.+... ..+ +  -.++++.|+++++|++...+...  ......+.+|...|++++|+|++.+|++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence            3457788887766543111 012 3  34588899999999976432110  1122357799999999999999999999


Q ss_pred             EeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEee---ccCcc
Q 001366          797 AGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYI---EHEKR  873 (1092)
Q Consensus       797 gg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~---~h~~~  873 (1092)
                      |+.|++|+|||+...       .......+|...|.+++|+|+ +.+|++++.|++|++||+. +.....+.   +|...
T Consensus        94 ~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~v~~sp~-~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~  164 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTG-------TTYKRFVGHQSEVYSVAFSPD-NRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDW  164 (343)
T ss_dssp             EETTSEEEEEETTSS-------CEEEEEECCCSCEEEEEECSS-TTEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSC
T ss_pred             EcCCCcEEEEECCCC-------cEEEEEcCCCCcEEEEEECCC-CCEEEEEcCCCEEEEEecc-CCceeeeecccCCCce
Confidence            999999999998752       222345679999999999998 8999999999999999997 44444443   78899


Q ss_pred             EEEEEEecCCC----------CEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEE
Q 001366          874 AWSVDFSQVHP----------TKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYD  942 (1092)
Q Consensus       874 V~sv~fsp~~~----------~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwD  942 (1092)
                      |.+++|+| ++          .+|++++.|++|++||.. ......+. |...|.+++|+|++. +|++|+.|+.|++||
T Consensus       165 v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd  241 (343)
T 2xzm_R          165 VSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWD  241 (343)
T ss_dssp             EEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEE
T ss_pred             eeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCC-EEEEEcCCCeEEEEE
Confidence            99999999 44          689999999999999954 55555665 678899999999995 899999999999999


Q ss_pred             cCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEE-----------cCCCCCeEE
Q 001366          943 LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTF-----------SGHTNEKNF 1011 (1092)
Q Consensus       943 lr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l-----------~~h~~~V~~ 1011 (1092)
                      +++...+...+ .+...|.+++|++++.+++++.|+.|++||+.+....      .+..+           .+|...|++
T Consensus       242 ~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~  314 (343)
T 2xzm_R          242 ILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKA------PVCTIEAEPITKAEGQKGKNPQCTS  314 (343)
T ss_dssp             SSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSC------SEEECCCCSGGGBTTBCCSCCCEEE
T ss_pred             CCCCcccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCC------ceEEeecCcchhhhhhcCCCCceEE
Confidence            97655444444 3456799999997666667778999999999854321      11122           368889999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEeCCC
Q 001366         1012 VGLSTADGYIACGSESNEVYAYHRSL 1037 (1092)
Q Consensus      1012 v~~spdg~~lasgs~Dg~I~Iwd~~~ 1037 (1092)
                      ++|+|+|.+|++|+.||.|++|++.+
T Consensus       315 ~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          315 LAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             EEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             EEECCCCCeEEEecCCceEEEEEEEc
Confidence            99999999999999999999998754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=341.57  Aligned_cols=312  Identities=13%  Similarity=0.070  Sum_probs=229.3

Q ss_pred             EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEEcCCCCCCCc---cc
Q 001366          748 LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRD------EDHFAAAGVSKKIKIFEFNALFNDSV---DV  818 (1092)
Q Consensus       748 l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspd------g~~latgg~D~~I~Iwd~~~~~~~~~---~~  818 (1092)
                      .+++.|+++++|++...+....+ ...+.+|...|.+++|+|+      +.+||+|+.|++|+|||+........   ..
T Consensus       177 aS~s~D~tI~iWd~~~~~~~~~~-~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~  255 (524)
T 2j04_B          177 DKEKHSSCIQIFKMNTSTLHCVK-VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC  255 (524)
T ss_dssp             -----CEEEEEEEEETTTCCEEE-EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred             ccCCCCceEEEEEccCCCCCceE-EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence            35678999999998654322111 1235578889999999997      57999999999999999975321100   01


Q ss_pred             ccc-eeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc-eEEEeeccCccEEEE--EEecCCC-CEEEEEeCC
Q 001366          819 YYP-AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ-TVSHYIEHEKRAWSV--DFSQVHP-TKLASGSDD  893 (1092)
Q Consensus       819 ~~~-~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~-~i~~l~~h~~~V~sv--~fsp~~~-~~laSgs~D  893 (1092)
                      ..+ ....+|...|++++|+++  ..|++|+.||+|++||+.++. ....+.+|...|++|  .|+| ++ .+|||||.|
T Consensus       256 ~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D  332 (524)
T 2j04_B          256 EKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVD  332 (524)
T ss_dssp             CSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETT
T ss_pred             cCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccC
Confidence            111 244578999999999984  589999999999999998774 456688999999999  4566 66 899999999


Q ss_pred             CcEEEEecCCCceeeeEec-C--CceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCC
Q 001366          894 CSVKLWNINEKNSLATIKN-I--ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSG  969 (1092)
Q Consensus       894 g~I~iWDl~~~~~l~~l~~-~--~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~  969 (1092)
                      ++|+|||+++++++.++.. .  ..|.+++|+|++. .+++++.|++|++||+++... ..++.+|...|++|+|+ ++.
T Consensus       333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g~  410 (524)
T 2j04_B          333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRLHP  410 (524)
T ss_dssp             SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSSCC
T ss_pred             CeEEEEECCCCCcccccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccccc-ceeeecCCCceEEEEeCCCCC
Confidence            9999999999888777653 2  3588999999985 789999999999999998764 45677899999999999 567


Q ss_pred             EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc-----CCCCCeEEEEEecCCCEEEEEecCCcEEEEeCC-CCCceee
Q 001366          970 TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS-----GHTNEKNFVGLSTADGYIACGSESNEVYAYHRS-LPMPITS 1043 (1092)
Q Consensus       970 ~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~-----~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~-~~~~i~~ 1043 (1092)
                      .|++|+.|++|++||+...         ++..+.     .+...++.++|+|+++.+. ...+  +.+|... .+..+  
T Consensus       411 ~l~Sgs~Dgtv~lwd~~~~---------~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~--  476 (524)
T 2j04_B          411 MVLAGSADGSLIITNAARR---------LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSK--  476 (524)
T ss_dssp             BCEEEETTTEEECCBSCSS---------TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC----------
T ss_pred             eEEEEECCCEEEEEechHh---------hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcce--
Confidence            8999999999999998632         111111     1222477899999998552 2222  3333221 12211  


Q ss_pred             eeccccCCCCCccccCCCCCCEEEEEEeCCCC---EEEEEecCCeEEEEEc
Q 001366         1044 YKFGSIDPISGKETDDDNGLFVSSVCWRRRSD---MVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1044 ~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~---~Lasgs~DG~V~vW~l 1091 (1092)
                                  ....+|...|++|+|+|++.   +||+|+.||.|+||++
T Consensus       477 ------------~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          477 ------------AKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             -----------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred             ------------eeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence                        13357888999999999964   9999999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-32  Score=315.67  Aligned_cols=288  Identities=19%  Similarity=0.232  Sum_probs=234.3

Q ss_pred             ccchhhhhhccccccCCCCcE-EeEcCCeEEEEEcccceEEeeEEeee-------------ecCCCCCEEEEEEcCCCCE
Q 001366          728 DRENLFLAQQDQEIQNPTDRL-GAFFDGLCKYARYSKFEVQGMLRTGE-------------FNNSANVICSISFDRDEDH  793 (1092)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~l-~~~~D~~~k~w~~~~~~~~~~l~~~~-------------l~~h~~~V~sl~fspdg~~  793 (1092)
                      +|.+.+..+.    ++|++.+ ....++.+++|+....+....+....             ...+...|++++|+|+|++
T Consensus        62 ~h~~~V~~v~----fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  137 (393)
T 1erj_A           62 DHTSVVCCVK----FSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  137 (393)
T ss_dssp             ECSSCCCEEE----ECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CCCCEEEEEE----ECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence            3555554443    4566554 34468899999988766655443211             0123345999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCcc
Q 001366          794 FAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKR  873 (1092)
Q Consensus       794 latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~  873 (1092)
                      ||+|+.|++|+|||+...       .......+|...|.+++|+|+ +.+|++++.|++|++||+.++++...+. +...
T Consensus       138 l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~  208 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENR-------KIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDG  208 (393)
T ss_dssp             EEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred             EEEEcCCCeEEEEECCCC-------cEEEEEccCCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCeeEEEEE-cCCC
Confidence            999999999999998751       223345679999999999998 8899999999999999999999888776 5677


Q ss_pred             EEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe--------cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCC
Q 001366          874 AWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK--------NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRN  945 (1092)
Q Consensus       874 V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~--------~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~  945 (1092)
                      +.+++|+|.++.+|++|+.|++|++||++++..+..+.        |...|.+++|+|++. +|++|+.|+.|++||+++
T Consensus       209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCC
Confidence            99999999788999999999999999999998887762        567899999999995 899999999999999986


Q ss_pred             CCc-----------ceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEE
Q 001366          946 ARA-----------PWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVG 1013 (1092)
Q Consensus       946 ~~~-----------~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~ 1013 (1092)
                      ...           ....+.+|...|.+++|+ ++.+|++|+.|++|++||+.        .+.++..+.+|...|++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~--------~~~~~~~l~~h~~~v~~v~  359 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK--------SGNPLLMLQGHRNSVISVA  359 (393)
T ss_dssp             -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT--------TCCEEEEEECCSSCEEEEE
T ss_pred             CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC--------CCeEEEEECCCCCCEEEEE
Confidence            421           234677899999999998 67799999999999999998        4567889999999999999


Q ss_pred             Eec------CCCEEEEEecCCcEEEEeCCC
Q 001366         1014 LST------ADGYIACGSESNEVYAYHRSL 1037 (1092)
Q Consensus      1014 ~sp------dg~~lasgs~Dg~I~Iwd~~~ 1037 (1092)
                      |++      ++.+||+||.|++|+||+...
T Consensus       360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          360 VANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             ecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            986      678999999999999998643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.6e-31  Score=316.01  Aligned_cols=320  Identities=17%  Similarity=0.275  Sum_probs=268.6

Q ss_pred             hhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 001366          725 LLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIK  804 (1092)
Q Consensus       725 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~  804 (1092)
                      .+.+|.+.+....   ..+++..++++.|+++++|+....+...     .+.+|...|.+++|+  +++|++|+.|++|+
T Consensus       113 ~l~~h~~~v~~~~---~~~g~~l~sg~~dg~i~vwd~~~~~~~~-----~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~  182 (445)
T 2ovr_B          113 VLKGHDDHVITCL---QFCGNRIVSGSDDNTLKVWSAVTGKCLR-----TLVGHTGGVWSSQMR--DNIIISGSTDRTLK  182 (445)
T ss_dssp             EEECSTTSCEEEE---EEETTEEEEEETTSCEEEEETTTCCEEE-----ECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             EecccCCCcEEEE---EEcCCEEEEEECCCcEEEEECCCCcEEE-----EEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence            4556665432211   1234455688999999999988766543     356899999999998  67999999999999


Q ss_pred             EEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCC
Q 001366          805 IFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP  884 (1092)
Q Consensus       805 Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~  884 (1092)
                      +||+...       .......+|...|.+++|++   ..|++|+.||+|++||+.+++.+..+.+|...|.+++|   ++
T Consensus       183 vwd~~~~-------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~  249 (445)
T 2ovr_B          183 VWNAETG-------ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DG  249 (445)
T ss_dssp             EEETTTT-------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---CS
T ss_pred             EEECCcC-------cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---CC
Confidence            9998752       22234457899999999974   58999999999999999999999999999999999999   46


Q ss_pred             CEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEE
Q 001366          885 TKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYV  963 (1092)
Q Consensus       885 ~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v  963 (1092)
                      ..+++|+.|+.|++||+++++++.++. +...|.+++|  ++ .++++|+.|+.|++||+++++ .+..+.+|...+.++
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~  325 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGM  325 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCC-EEEEEcCCcccEEEE
Confidence            789999999999999999999998887 6778999999  45 489999999999999999876 467888999999999


Q ss_pred             EEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC---CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCc
Q 001366          964 KFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG---HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       964 ~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~---h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                      .+. +++|++|+.||.|++||++        .+.++..+.+   |...|++++|+  +.+|++|+.||.|++||+.+++.
T Consensus       326 ~~~-~~~l~~~~~dg~i~vwd~~--------~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          326 ELK-DNILVSGNADSTVKIWDIK--------TGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             EEE-TTEEEEEETTSCEEEEETT--------TCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEe-CCEEEEEeCCCeEEEEECC--------CCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence            985 6799999999999999998        3566777776   88899999996  57999999999999999999988


Q ss_pred             eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCe----EEEEEc
Q 001366         1041 ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGC----IKVLQM 1091 (1092)
Q Consensus      1041 i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~----V~vW~l 1091 (1092)
                      +..+..         .....|...|++++|+|++.+||+|+.||.    |.||++
T Consensus       395 ~~~~~~---------~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df  440 (445)
T 2ovr_B          395 IRNLVT---------LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  440 (445)
T ss_dssp             EEEEEE---------CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             eeeeec---------cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence            876631         011356788999999999999999999998    999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=309.08  Aligned_cols=299  Identities=18%  Similarity=0.214  Sum_probs=238.4

Q ss_pred             ecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCCCCccccccee------eecCCCCeEEEEEecCCCCEEEEE
Q 001366          775 FNNSANVICSISFDR-DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAV------EMSNRSKLSCVCWNNYIKNYLASA  847 (1092)
Q Consensus       775 l~~h~~~V~sl~fsp-dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~------~~~h~~~V~~v~~sp~~~~~LaSg  847 (1092)
                      +.+|...|++++|+| ++++||+|+.|+.|+|||+...............      ..+|...|.+++|+|+++.+|+++
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  118 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS  118 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence            557999999999999 9999999999999999999763221111100000      124899999999999658899999


Q ss_pred             ECCCcEEEEECCCCceEEEeeccCccEEEEEEecCC--CCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccC
Q 001366          848 DYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVH--PTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAH  924 (1092)
Q Consensus       848 s~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~--~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~  924 (1092)
                      +.||.|++||+.+++.+..+. +...+.++.|++..  +.++++|+.|+.|++||+++++.+..+. +...|.+++|+|+
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~  197 (408)
T 4a11_B          119 SFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR  197 (408)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSS
T ss_pred             eCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCC
Confidence            999999999999999888876 78889999999853  3489999999999999999999988887 6788999999999


Q ss_pred             CCeEEEEEECCCeEEEEEcCCCCcceEEe---------------cCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCC
Q 001366          925 SSHLLAFGSADYRTYCYDLRNARAPWCVL---------------AGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRT  988 (1092)
Q Consensus       925 ~~~~latgs~Dg~I~vwDlr~~~~~~~~l---------------~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~  988 (1092)
                      +..+|++|+.||.|++||+++....+..+               .+|...|.+++|+ ++.+|++++.||.|++||+.+.
T Consensus       198 ~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence            97789999999999999999876555554               5789999999999 6678999999999999999865


Q ss_pred             CCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEE
Q 001366          989 SHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSV 1068 (1092)
Q Consensus       989 ~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sv 1068 (1092)
                      .........   ........+........+..+++++.|+.|++||+..++++..+              .+|...|.++
T Consensus       278 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--------------~~~~~~v~~~  340 (408)
T 4a11_B          278 ENTLVNYGK---VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML--------------KGHYKTVDCC  340 (408)
T ss_dssp             CBCCCCCCC---CCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE--------------CCCSSCEEEE
T ss_pred             ccceecccc---ccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee--------------ccCCCeEEEE
Confidence            432111100   00111111222222333556777788999999999988877655              3578899999


Q ss_pred             EEeCCCCEEEEEecCCeEEEEEc
Q 001366         1069 CWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1069 a~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +|+|++.+|++|+.||.|++|++
T Consensus       341 ~~s~~~~~l~s~~~dg~i~iw~~  363 (408)
T 4a11_B          341 VFQSNFQELYSGSRDCNILAWVP  363 (408)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEE
T ss_pred             EEcCCCCEEEEECCCCeEEEEeC
Confidence            99999999999999999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.1e-32  Score=303.24  Aligned_cols=252  Identities=19%  Similarity=0.220  Sum_probs=209.3

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecC-CCCEEEEEECCCcE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNY-IKNYLASADYDGVV  853 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~LaSgs~DgtV  853 (1092)
                      +.+|...|++++|+|+|++||+|+.|++|+||++....     ........+|...|.+++|+++ .+.+|+||+.||+|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            56899999999999999999999999999999986411     1223455689999999999863 37899999999999


Q ss_pred             EEEECCCCc--eEEEeeccCccEEEEEEecCC-CCEEEEEeCCCcEEEEecCCCce--eeeEe-cCCceEEEEEccCC--
Q 001366          854 KLWDACTGQ--TVSHYIEHEKRAWSVDFSQVH-PTKLASGSDDCSVKLWNINEKNS--LATIK-NIANVCCVQFSAHS--  925 (1092)
Q Consensus       854 ~IWD~~tg~--~i~~l~~h~~~V~sv~fsp~~-~~~laSgs~Dg~I~iWDl~~~~~--l~~l~-~~~~V~sl~fsp~~--  925 (1092)
                      +|||+.+++  .+..+.+|...|.+++|+|.. +.+|++|+.|++|++||++++..  ...+. |...|.+++|+|++  
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  159 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence            999998874  567788899999999999932 78999999999999999987642  23333 67789999999973  


Q ss_pred             ----------CeEEEEEECCCeEEEEEcCCCCc---ceEEecCCCCCeEEEEEcCC----CEEEEEECCCeEEEEEcCCC
Q 001366          926 ----------SHLLAFGSADYRTYCYDLRNARA---PWCVLAGHEKAVSYVKFLDS----GTLVTASTDNKLKLWDLKRT  988 (1092)
Q Consensus       926 ----------~~~latgs~Dg~I~vwDlr~~~~---~~~~l~~H~~~V~~v~fs~~----~~L~Sgs~Dg~I~vWDl~~~  988 (1092)
                                ..+|++|+.|+.|++||+++...   ....+.+|...|.+|+|++.    .+|++++.|++|+|||++..
T Consensus       160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                      25899999999999999987653   34578899999999999954    68999999999999999742


Q ss_pred             CCCCCCCCceeEEE--cCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCC
Q 001366          989 SHTGPSTNACSLTF--SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       989 ~~~~~~~~~~~~~l--~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                      ..     ......+  ..|...|++++|+|+|.+||+|+.|+.|+||+..
T Consensus       240 ~~-----~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          240 QG-----PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             TS-----CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CC-----ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            11     0111223  4688899999999999999999999999999865

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.2e-32  Score=320.26  Aligned_cols=301  Identities=17%  Similarity=0.249  Sum_probs=231.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCC----CCcccccceeeecCC------------CCeEEEEEecCC
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFN----DSVDVYYPAVEMSNR------------SKLSCVCWNNYI  840 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~----~~~~~~~~~~~~~h~------------~~V~~v~~sp~~  840 (1092)
                      .|.+.|++++|+|+|++||+|+.|+.|+||++.....    ............+|.            ..|++++|+|+.
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            4678999999999999999999999999999875321    001111233455787            889999999982


Q ss_pred             C-CEEEEEECCCcEEEEECCCCceE---------------------------------------EE-eeccCccEEEEEE
Q 001366          841 K-NYLASADYDGVVKLWDACTGQTV---------------------------------------SH-YIEHEKRAWSVDF  879 (1092)
Q Consensus       841 ~-~~LaSgs~DgtV~IWD~~tg~~i---------------------------------------~~-l~~h~~~V~sv~f  879 (1092)
                      . .+|++++.||+|++||+.+++..                                       .. ..+|...|++++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            2 79999999999999998764432                                       12 3579999999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEecC-CCceeeeE--------ecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc--
Q 001366          880 SQVHPTKLASGSDDCSVKLWNIN-EKNSLATI--------KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--  948 (1092)
Q Consensus       880 sp~~~~~laSgs~Dg~I~iWDl~-~~~~l~~l--------~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~--  948 (1092)
                      +| ++.+|++| .|++|++||++ .+.++..+        .+...|++++|+|++..+|++|+.||.|++||+++.+.  
T Consensus       186 ~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99 89999998 79999999999 44455533        36678999999999855999999999999999998764  


Q ss_pred             -ceEEecCCCC------------CeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCC------
Q 001366          949 -PWCVLAGHEK------------AVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNE------ 1008 (1092)
Q Consensus       949 -~~~~l~~H~~------------~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~------ 1008 (1092)
                       ....+.+|..            .|.+++|+ ++.+|++++. +.|++||++..       +.++..+.+|...      
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~-------~~~~~~~~~~~~~~~~l~~  335 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME-------NRPVETYQVHEYLRSKLCS  335 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC-------SSCSCCEESCGGGTTTHHH
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC-------ccccceeeccccccccccc
Confidence             2577888876            89999999 6678888888 99999999841       4456677777532      


Q ss_pred             ---------eEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCc--------------------cccC
Q 001366         1009 ---------KNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGK--------------------ETDD 1059 (1092)
Q Consensus      1009 ---------V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~--------------------~~~~ 1059 (1092)
                               +..++|+|++.+|++|+.|+.|+|||+.+++.+....  ...+....                    ....
T Consensus       336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (447)
T 3dw8_B          336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEA--SRENNKPRTVLKPRKVCASGKRKKDEISVDSL  413 (447)
T ss_dssp             HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEEC--CSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred             cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeee--cccccccccccCCccccccCCccccccccccc
Confidence                     2349999999999999999999999999887664221  11111100                    0112


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1060 DNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1060 ~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      ++...|..++|+|++.+||+|+.++ +.+|.
T Consensus       414 ~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          414 DFNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             CTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             ccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence            4556799999999999999998886 66664

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.1e-31  Score=313.63  Aligned_cols=320  Identities=15%  Similarity=0.231  Sum_probs=259.0

Q ss_pred             hhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKI  803 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I  803 (1092)
                      ..+++|.+.+....   ..+++-.++++.|+++++|+....+...     .+.+|...|.+++|+|++ +|++|+.|++|
T Consensus       115 ~~l~~h~~~v~~~~---~~~~~~l~sgs~dg~i~vwd~~~~~~~~-----~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i  185 (464)
T 3v7d_B          115 TTLRGHMTSVITCL---QFEDNYVITGADDKMIRVYDSINKKFLL-----QLSGHDGGVWALKYAHGG-ILVSGSTDRTV  185 (464)
T ss_dssp             EEEECCSSSCEEEE---EEETTEEEEEETTSCEEEEETTTTEEEE-----EECCCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred             EEEcCCCCCcEEEE---EECCCEEEEEcCCCcEEEEECCCCcEEE-----EEeCCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence            34566665442211   1234456688999999999988776544     355899999999999988 99999999999


Q ss_pred             EEEEcCCCCCCCcccccceeeecCCCCeEEEEEecC-CCCEEEEEECCCcEEEEECCCCc--------------------
Q 001366          804 KIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNY-IKNYLASADYDGVVKLWDACTGQ--------------------  862 (1092)
Q Consensus       804 ~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~LaSgs~DgtV~IWD~~tg~--------------------  862 (1092)
                      +|||+.+.       .......+|...|.+++|++. ++.+|++|+.||+|++||+.++.                    
T Consensus       186 ~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  258 (464)
T 3v7d_B          186 RVWDIKKG-------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  258 (464)
T ss_dssp             EEEETTTT-------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred             EEEECCCC-------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence            99998752       223345579999999999852 36899999999999999998765                    


Q ss_pred             ---eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeE
Q 001366          863 ---TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRT  938 (1092)
Q Consensus       863 ---~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I  938 (1092)
                         .+..+.+|...|.++.  + ++..+++|+.|+.|++||+++++++..+. +...|.+++|+|++. ++++|+.||.|
T Consensus       259 ~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i  334 (464)
T 3v7d_B          259 NPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTI  334 (464)
T ss_dssp             CTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCE
T ss_pred             CeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcE
Confidence               2567788999998874  4 67899999999999999999999998887 678899999999985 89999999999


Q ss_pred             EEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCC
Q 001366          939 YCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTAD 1018 (1092)
Q Consensus       939 ~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg 1018 (1092)
                      ++||+++++ ++..+.+|...|.+++|+ +.+|++++.||+|++||+.+        ....... .|...+..++|++++
T Consensus       335 ~vwd~~~~~-~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~--------~~~~~~~-~~~~~~~~~~~~~~~  403 (464)
T 3v7d_B          335 RIWDLENGE-LMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDAND--------YSRKFSY-HHTNLSAITTFYVSD  403 (464)
T ss_dssp             EEEETTTTE-EEEEECCCSSCEEEEEEC-SSEEEEEETTSEEEEEETTT--------CCEEEEE-ECTTCCCEEEEEECS
T ss_pred             EEEECCCCc-EEEEEeCCCCcEEEEEEc-CCEEEEEeCCCcEEEEECCC--------Cceeeee-cCCCCccEEEEEeCC
Confidence            999999875 567889999999999997 68999999999999999984        2333333 366778889999999


Q ss_pred             CEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEE
Q 001366         1019 GYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVL 1089 (1092)
Q Consensus      1019 ~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW 1089 (1092)
                      .+|++|+ |+.|++||+.+++.+....             ..|...|++++|+ ...++++++.||.+.+|
T Consensus       404 ~~l~~~~-dg~i~iwd~~~g~~~~~~~-------------~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          404 NILVSGS-ENQFNIYNLRSGKLVHANI-------------LKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCEEESCT-------------TTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             CEEEEec-CCeEEEEECCCCcEEehhh-------------ccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            9999999 8999999999998776432             3457789999998 44555566677766554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-32  Score=346.58  Aligned_cols=330  Identities=11%  Similarity=0.095  Sum_probs=249.3

Q ss_pred             CCCC-cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccc---
Q 001366          743 NPTD-RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDV---  818 (1092)
Q Consensus       743 ~~~~-~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~---  818 (1092)
                      .|.. .++++.|+++++|++...+....+.      |...|++++|+|++++|++|+.|++|++||+..........   
T Consensus        67 spg~~L~S~s~D~~v~lWd~~~~~~~~~~~------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~  140 (902)
T 2oaj_A           67 VKGIYLVVINAKDTVYVLSLYSQKVLTTVF------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNL  140 (902)
T ss_dssp             ETTTEEEEEETTCEEEEEETTTCSEEEEEE------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCH
T ss_pred             cCCCEEEEEECcCeEEEEECCCCcEEEEEc------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccc
Confidence            3434 5678899999999998766554432      56789999999999999999999999999987522100000   


Q ss_pred             ccc-eeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeecc------------------CccEEEEEE
Q 001366          819 YYP-AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEH------------------EKRAWSVDF  879 (1092)
Q Consensus       819 ~~~-~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h------------------~~~V~sv~f  879 (1092)
                      ... ....+|.+.|.+++|+|+++..|++|+.||+| |||+.+++++..+..|                  ...|++++|
T Consensus       141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f  219 (902)
T 2oaj_A          141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY  219 (902)
T ss_dssp             HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred             cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence            000 12246889999999999756799999999999 9999999998888766                  467999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEecCCCceeee--Ee----c-------------CCceEEEEE-------------------
Q 001366          880 SQVHPTKLASGSDDCSVKLWNINEKNSLAT--IK----N-------------IANVCCVQF-------------------  921 (1092)
Q Consensus       880 sp~~~~~laSgs~Dg~I~iWDl~~~~~l~~--l~----~-------------~~~V~sl~f-------------------  921 (1092)
                      +| ++.+|++|+.|++|++||+++++++..  +.    +             ...|++++|                   
T Consensus       220 sp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~  298 (902)
T 2oaj_A          220 HP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSIS  298 (902)
T ss_dssp             CT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECST
T ss_pred             cC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCC
Confidence            99 899999999999999999987655431  10    0             111222222                   


Q ss_pred             --------------------------------------------------------------------------------
Q 001366          922 --------------------------------------------------------------------------------  921 (1092)
Q Consensus       922 --------------------------------------------------------------------------------  921 (1092)
                                                                                                      
T Consensus       299 ~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~  378 (902)
T 2oaj_A          299 RGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET  378 (902)
T ss_dssp             TSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred             CCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------------ccCCCeEEEEEECCC
Q 001366          922 -----------------------------------------------------------------SAHSSHLLAFGSADY  936 (1092)
Q Consensus       922 -----------------------------------------------------------------sp~~~~~latgs~Dg  936 (1092)
                                                                                       +|++ .+|++|+.|+
T Consensus       379 ~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~Dg  457 (902)
T 2oaj_A          379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNG  457 (902)
T ss_dssp             EETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTS
T ss_pred             EECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCC
Confidence                                                                             2333 3677777788


Q ss_pred             eEEEEEcCCCCcc---eEE--e-----cCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCC------------
Q 001366          937 RTYCYDLRNARAP---WCV--L-----AGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGP------------  993 (1092)
Q Consensus       937 ~I~vwDlr~~~~~---~~~--l-----~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~------------  993 (1092)
                      +|++||+.++...   ...  +     .+|...|.+|+|+ ++.+|++|+.||+|+|||+.+....+.            
T Consensus       458 tVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~  537 (902)
T 2oaj_A          458 SVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMN  537 (902)
T ss_dssp             EEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------
T ss_pred             cEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCccccee
Confidence            8888887665321   011  1     1788999999999 778999999999999999975421000            


Q ss_pred             -------------------------CCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccc
Q 001366          994 -------------------------STNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGS 1048 (1092)
Q Consensus       994 -------------------------~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~ 1048 (1092)
                                               ....++.++.+|...|++++|||+| +||+|+.|++|++||+..+..+.....  
T Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~--  614 (902)
T 2oaj_A          538 FRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENI--  614 (902)
T ss_dssp             CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEG--
T ss_pred             eeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeeh--
Confidence                                     0013577888999999999999999 999999999999999887766543221  


Q ss_pred             cCCCCCcccc-CCCCCCEEEEEEe-----CCC---CEEEEEecCCeEEEEEc
Q 001366         1049 IDPISGKETD-DDNGLFVSSVCWR-----RRS---DMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1049 ~~~i~~~~~~-~~h~~~V~sva~s-----pd~---~~Lasgs~DG~V~vW~l 1091 (1092)
                             ... .+|...|++|+|+     |||   .+|++|+.||+|++|++
T Consensus       615 -------~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          615 -------REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             -------GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             -------hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence                   122 3789999999999     885   89999999999999997

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.7e-32  Score=303.88  Aligned_cols=301  Identities=15%  Similarity=0.185  Sum_probs=239.6

Q ss_pred             hhhhccchhhhhhccccccCCC---CcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC
Q 001366          724 DLLRDRENLFLAQQDQEIQNPT---DRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS  800 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~---~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D  800 (1092)
                      .+|++|.+.+.++.+    +|+   -.++++.|+++++|++...+.........+.+|...|++++|+|++++|++|+.|
T Consensus        32 ~tL~GH~~~V~~v~~----sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           32 GTLKGHNGWVTQIAT----TPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEECCCSSCEEEEEE----CTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCccCCEEEEEE----eCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            468899998887754    443   2457899999999998765544344445678999999999999999999999999


Q ss_pred             CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCce-EEEeeccCccEEEEEE
Q 001366          801 KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQT-VSHYIEHEKRAWSVDF  879 (1092)
Q Consensus       801 ~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~-i~~l~~h~~~V~sv~f  879 (1092)
                      +.|++|+....       ........+...+.++.++++ +.+|++++.|+.+++||+..... ...+.+|...+.+++|
T Consensus       108 ~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~  179 (340)
T 4aow_A          108 GTLRLWDLTTG-------TTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF  179 (340)
T ss_dssp             SEEEEEETTTT-------EEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred             ccceEEeeccc-------ceeeeecCCCCceeEEEEeec-CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEE
Confidence            99999998651       222334456778888999987 88999999999999999876653 4445689999999999


Q ss_pred             ecCC-CCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCC
Q 001366          880 SQVH-PTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHE  957 (1092)
Q Consensus       880 sp~~-~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~  957 (1092)
                      ++.. ..++++++.|++|++||+++++.+..+. +...|++++|+|++. +|++|+.|+.|++||+++.+. +..+.. .
T Consensus       180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~-~~~~~~-~  256 (340)
T 4aow_A          180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKH-LYTLDG-G  256 (340)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEE-EEEEEC-S
T ss_pred             ccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCce-eeeecC-C
Confidence            8843 3568999999999999999999988887 678899999999985 999999999999999998754 455544 4


Q ss_pred             CCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCC-CCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCC
Q 001366          958 KAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPS-TNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       958 ~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~-~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                      ..|.++.|++++.+++++.|+.|++||++........ .........+|...|++++|+|+|++|++|+.||.|+||++.
T Consensus       257 ~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          257 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            6799999998888999999999999999843211000 111223345789999999999999999999999999999988


Q ss_pred             CCC
Q 001366         1037 LPM 1039 (1092)
Q Consensus      1037 ~~~ 1039 (1092)
                      +|+
T Consensus       337 tGt  339 (340)
T 4aow_A          337 IGT  339 (340)
T ss_dssp             C--
T ss_pred             CcC
Confidence            764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=9.3e-32  Score=304.25  Aligned_cols=282  Identities=10%  Similarity=0.088  Sum_probs=240.3

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCC-EEEEEECCCcE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKN-YLASADYDGVV  853 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~LaSgs~DgtV  853 (1092)
                      ..+|...|++++|+|++++|++|+.|+.|+||++.....    .........|...|.+++|+|+ +. +|++|+.||.|
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i   81 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----NVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEI   81 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----EEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----cccceeeeecCCceEEEEECCC-CCcEEEEEcCCCeE
Confidence            347999999999999999999999999999999875210    1112344578999999999998 88 99999999999


Q ss_pred             EEEEC-CCCceEEEeec--cCccEEEEEEecCCCCEEEEEeCCCcEEEEecCC---------CceeeeEecCCceEEEEE
Q 001366          854 KLWDA-CTGQTVSHYIE--HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE---------KNSLATIKNIANVCCVQF  921 (1092)
Q Consensus       854 ~IWD~-~tg~~i~~l~~--h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~---------~~~l~~l~~~~~V~sl~f  921 (1092)
                      ++||+ .+++. ..+.+  |...|++++|+|  +..|++++.|+.|++||+++         ++++.++.+...|.+++|
T Consensus        82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  158 (342)
T 1yfq_A           82 LKVDLIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             EEECSSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             EEEEeccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence            99999 77755 67788  999999999999  78999999999999999998         888888888899999999


Q ss_pred             ccCCCeEEEEEECCCeEEEEEcCC-CCc-ceEEecCCCCCeEEEEEcC--CCEEEEEECCCeEEEEEcCCCCCCCCCCCc
Q 001366          922 SAHSSHLLAFGSADYRTYCYDLRN-ARA-PWCVLAGHEKAVSYVKFLD--SGTLVTASTDNKLKLWDLKRTSHTGPSTNA  997 (1092)
Q Consensus       922 sp~~~~~latgs~Dg~I~vwDlr~-~~~-~~~~l~~H~~~V~~v~fs~--~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~  997 (1092)
                      +|++   +++++.|+.|++||+++ ... .......|...|.+++|++  +.+|++++.||.|++||++....  .....
T Consensus       159 ~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--~~~~~  233 (342)
T 1yfq_A          159 NSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD--DYNSS  233 (342)
T ss_dssp             CSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC--STTCT
T ss_pred             cCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc--ccccc
Confidence            9875   88999999999999998 544 2345567889999999985  67899999999999999984310  00125


Q ss_pred             eeEEEcCCCC---------CeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCC-CCCEEE
Q 001366          998 CSLTFSGHTN---------EKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDN-GLFVSS 1067 (1092)
Q Consensus       998 ~~~~l~~h~~---------~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h-~~~V~s 1067 (1092)
                      ....+..|..         .|++++|+|++++|++|+.||.|++||+.+++.+..+              .+| ...|.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------------~~~h~~~v~~  299 (342)
T 1yfq_A          234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF--------------AKFNEDSVVK  299 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC--------------CCCSSSEEEE
T ss_pred             cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh--------------hcccCCCceE
Confidence            5677777765         9999999999999999999999999999988876654              345 788999


Q ss_pred             EEEeCCCCEEEEEecCCe
Q 001366         1068 VCWRRRSDMVVAANSSGC 1085 (1092)
Q Consensus      1068 va~spd~~~Lasgs~DG~ 1085 (1092)
                      ++  |++.+|++|+.||.
T Consensus       300 ~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          300 IA--CSDNILCLATSDDT  315 (342)
T ss_dssp             EE--ECSSEEEEEEECTH
T ss_pred             ec--CCCCeEEEEecCCc
Confidence            99  99999999999998

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=1.2e-34  Score=329.02  Aligned_cols=280  Identities=21%  Similarity=0.245  Sum_probs=200.3

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC--
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD--  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  288 (1092)
                      .|.+.+.+  +|.|.||++...    ..+..++.|+..............++..++...+||||+.+++.........  
T Consensus         7 ~y~~~~~lG~G~~g~V~~a~~~----~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~   82 (332)
T 3qd2_B            7 DFEPIQCMGRGGFGVVFEAKNK----VDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQ   82 (332)
T ss_dssp             HEEEEEEEECC-CSEEEEEEET----TTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHH
T ss_pred             cCceeeEecCCCCeEEEEEEEc----CCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhh
Confidence            44444444  478999999863    2255667776643333334455667778888999999999876643322100  


Q ss_pred             ------------------CCc--------cCCCCCcc---------c---c-CCCcccccCCCCCHHHHHhhcCCC--CC
Q 001366          289 ------------------LGA--------RTGVPASC---------W---I-GGLRQGSSDHGVNLREWLNARGHK--GK  327 (1092)
Q Consensus       289 ------------------~~~--------~~~~~~~~---------~---~-~~~~~~~~~~GgsL~~~l~~~~~~--~~  327 (1092)
                                        ..+        ...+..+.         .   . -...+||||+|++|.++++.....  .+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~  162 (332)
T 3qd2_B           83 EEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDRE  162 (332)
T ss_dssp             HHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSC
T ss_pred             hhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchh
Confidence                              000        00000000         0   0 023589999999999999875432  34


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccc
Q 001366          328 RIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTT  407 (1092)
Q Consensus       328 ~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  407 (1092)
                      ...++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||+++............                  
T Consensus       163 ~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~------------------  224 (332)
T 3qd2_B          163 HGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVL------------------  224 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC-------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhcccc------------------
Confidence            44689999999999999999999999999999999999999999999998755211100000                  


Q ss_pred             cccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCccccccccccc
Q 001366          408 GIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQST  487 (1092)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (1092)
                                                                                               .......
T Consensus       225 -------------------------------------------------------------------------~~~~~~~  231 (332)
T 3qd2_B          225 -------------------------------------------------------------------------TPMPAYA  231 (332)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0000011


Q ss_pred             ccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccc
Q 001366          488 SVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLH  567 (1092)
Q Consensus       488 ~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~  567 (1092)
                      .....+||+.|+|||++.+..++.++|||||||+||||++++.+.......+........|..+...++.+.+|+.+||+
T Consensus       232 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  311 (332)
T 3qd2_B          232 THTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLS  311 (332)
T ss_dssp             CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHHC
T ss_pred             cccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcccccCChhHHHHHHHHcc
Confidence            12256899999999999999999999999999999999999988887777777777777776666677889999999999


Q ss_pred             cCCCCCCCHHHHhhhhhhhh
Q 001366          568 PEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       568 ~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      +||.+|||+.|+|+||||.+
T Consensus       312 ~~p~~Rps~~~~l~~~~f~~  331 (332)
T 3qd2_B          312 PSPTERPEATDIIENAIFEN  331 (332)
T ss_dssp             SSGGGSCCHHHHHHSTTCCC
T ss_pred             CCCCcCCCHHHHhhchhhhc
Confidence            99999999999999999975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.8e-31  Score=309.40  Aligned_cols=278  Identities=17%  Similarity=0.275  Sum_probs=232.3

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECC
Q 001366          780 NVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDAC  859 (1092)
Q Consensus       780 ~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~  859 (1092)
                      -.++.|+|+++ ++||+|. |++|+|||..+..     ........+|...|+||+|+|+ +++||+|+.||+|+|||+.
T Consensus       106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~-----~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~  177 (420)
T 4gga_A          106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGD-----ILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQ  177 (420)
T ss_dssp             TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCC-----EEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETT
T ss_pred             ccceeEEECCC-CEEEEEe-CCEEEEEECCCCC-----EEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcC
Confidence            34677999975 5788775 9999999987521     1111223357888999999998 8999999999999999999


Q ss_pred             CCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc-eeeeEe-cCCceEEEEEccCCCeEEEEEECCCe
Q 001366          860 TGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN-SLATIK-NIANVCCVQFSAHSSHLLAFGSADYR  937 (1092)
Q Consensus       860 tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~-~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~  937 (1092)
                      +++.+..+.+|...+.++++++   .+|++|+.|+.+++||..... .+.++. |...++++.|+|++. ++++++.|+.
T Consensus       178 ~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~  253 (420)
T 4gga_A          178 QQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNL  253 (420)
T ss_dssp             TTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             CCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeecccc
Confidence            9999999999999999998864   799999999999999998754 445555 678899999999995 8999999999


Q ss_pred             EEEEEcCCCCc---ceEEecCCCCCeEEEEEc--CCCEEEE--EECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeE
Q 001366          938 TYCYDLRNARA---PWCVLAGHEKAVSYVKFL--DSGTLVT--ASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN 1010 (1092)
Q Consensus       938 I~vwDlr~~~~---~~~~l~~H~~~V~~v~fs--~~~~L~S--gs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~ 1010 (1092)
                      |++||..+++.   .+.....|...|.+++|+  ....+++  |+.|++|++||+.        ++.+...+..| ..+.
T Consensus       254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~--------t~~~~~~~~~~-~~v~  324 (420)
T 4gga_A          254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC--------SGACLSAVDAH-SQVC  324 (420)
T ss_dssp             EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT--------TTEEEEEEECS-SCEE
T ss_pred             ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC--------ccccceeeccc-ccee
Confidence            99999987653   456778899999999998  3445655  4579999999998        45667777655 5688


Q ss_pred             EEEEecCCCEEEEEe--cCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEE
Q 001366         1011 FVGLSTADGYIACGS--ESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088 (1092)
Q Consensus      1011 ~v~~spdg~~lasgs--~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~v 1088 (1092)
                      ++.|+|+++.+++++  .|+.|+|||..+++++..+              .+|...|++|+|+|++.+||||+.||+|+|
T Consensus       325 ~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l--------------~gH~~~V~~l~~spdg~~l~S~s~D~tvri  390 (420)
T 4gga_A          325 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--------------KGHTSRVLSLTMSPDGATVASAAADETLRL  390 (420)
T ss_dssp             EEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE--------------CCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred             eeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE--------------cCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence            999999999888765  7899999999988887654              468899999999999999999999999999


Q ss_pred             EEcC
Q 001366         1089 LQMV 1092 (1092)
Q Consensus      1089 W~lv 1092 (1092)
                      |++.
T Consensus       391 Wdv~  394 (420)
T 4gga_A          391 WRCF  394 (420)
T ss_dssp             ECCS
T ss_pred             EECC
Confidence            9973

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=345.15  Aligned_cols=198  Identities=9%  Similarity=0.021  Sum_probs=160.2

Q ss_pred             ccchhhhhhccccccCCCCc--EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 001366          728 DRENLFLAQQDQEIQNPTDR--LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKI  805 (1092)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~--l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~I  805 (1092)
                      +|...+.++.    ++|++.  ++++.|+++++|+....+...      ...|...|.+++|+| |++||+++.|++|+|
T Consensus        15 gh~~~V~~la----fspdg~~lAsgs~Dg~I~lw~~~~~~~~~------~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~l   83 (902)
T 2oaj_A           15 GMSSKPIAAA----FDFTQNLLAIATVTGEVHIYGQQQVEVVI------KLEDRSAIKEMRFVK-GIYLVVINAKDTVYV   83 (902)
T ss_dssp             ECSSCEEEEE----EETTTTEEEEEETTSEEEEECSTTCEEEE------ECSSCCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred             CCCCCcEEEE----ECCCCCEEEEEeCCCEEEEEeCCCcEEEE------EcCCCCCEEEEEEcC-CCEEEEEECcCeEEE
Confidence            4555555443    355554  367899999999977654422      124788999999999 889999999999999


Q ss_pred             EEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceE-----------EEeeccCccE
Q 001366          806 FEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTV-----------SHYIEHEKRA  874 (1092)
Q Consensus       806 wd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i-----------~~l~~h~~~V  874 (1092)
                      ||+....        ....+.|...|++++|+|+ +++|++|+.||+|++||+.+++..           ..+.+|...|
T Consensus        84 Wd~~~~~--------~~~~~~~~~~V~~v~~sp~-g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V  154 (902)
T 2oaj_A           84 LSLYSQK--------VLTTVFVPGKITSIDTDAS-LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI  154 (902)
T ss_dssp             EETTTCS--------EEEEEECSSCEEEEECCTT-CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred             EECCCCc--------EEEEEcCCCCEEEEEECCC-CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence            9987521        1222347789999999998 899999999999999999988753           2335789999


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecC-------------------CceEEEEEccCCCeEEEEEECC
Q 001366          875 WSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI-------------------ANVCCVQFSAHSSHLLAFGSAD  935 (1092)
Q Consensus       875 ~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~-------------------~~V~sl~fsp~~~~~latgs~D  935 (1092)
                      ++++|+|.++..+++|+.|++| +||+++++++..+...                   ..|++++|+|++. +|++|+.|
T Consensus       155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~D  232 (902)
T 2oaj_A          155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHED  232 (902)
T ss_dssp             CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETT
T ss_pred             EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECC
Confidence            9999999556789999999999 9999999988877643                   5699999999985 99999999


Q ss_pred             CeEEEEEcCCCC
Q 001366          936 YRTYCYDLRNAR  947 (1092)
Q Consensus       936 g~I~vwDlr~~~  947 (1092)
                      +.|++||+++++
T Consensus       233 g~i~lWd~~~g~  244 (902)
T 2oaj_A          233 NSLVFWDANSGH  244 (902)
T ss_dssp             CCEEEEETTTCC
T ss_pred             CeEEEEECCCCc
Confidence            999999997654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-31  Score=312.39  Aligned_cols=280  Identities=15%  Similarity=0.222  Sum_probs=232.8

Q ss_pred             CCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          777 NSANV--ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       777 ~h~~~--V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      +|...  +.+++|++  ..+++++.|+.|+||++....      ........|...|.+++|+|+ +.+|++|+.||.|+
T Consensus        89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~------~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~  159 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGS------VSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVD  159 (401)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCC------EEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEE
T ss_pred             CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCc------EeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEE
Confidence            44443  45566665  558888899999999987521      112233347899999999997 89999999999999


Q ss_pred             EEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecC-CCceeeeEe-cCCceEEEEEccCCCeEEEEE
Q 001366          855 LWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN-EKNSLATIK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~-~~~~l~~l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      +||+.+++.+..+.+|...|.+++|++   ..|++|+.|+.|++||++ .+..+..+. +...|++++|+|++. +|++|
T Consensus       160 iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~  235 (401)
T 4aez_A          160 IYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASG  235 (401)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred             EEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEE
Confidence            999999999999999999999999954   799999999999999999 455566665 678999999999885 99999


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC-C-CEEEEEE--CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCC
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD-S-GTLVTAS--TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNE 1008 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~-~-~~L~Sgs--~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~ 1008 (1092)
                      +.|+.|++||+++.. +...+.+|...|.+++|++ + ..+++++  .|+.|++||+.+        +.++..+. |...
T Consensus       236 ~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~--------~~~~~~~~-~~~~  305 (401)
T 4aez_A          236 GNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT--------GARVNTVD-AGSQ  305 (401)
T ss_dssp             ETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT--------CCEEEEEE-CSSC
T ss_pred             eCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC--------CCEEEEEe-CCCc
Confidence            999999999999865 4667889999999999994 3 4566655  799999999983        45666665 5678


Q ss_pred             eEEEEEecCCCEEEEE--ecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeE
Q 001366         1009 KNFVGLSTADGYIACG--SESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCI 1086 (1092)
Q Consensus      1009 V~~v~~spdg~~lasg--s~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V 1086 (1092)
                      |.+++|+|++.+|+++  +.||.|++|++..+.......            ..+|...|.+++|+|++.+|++++.||.|
T Consensus       306 v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~------------~~~h~~~v~~~~~s~dg~~l~s~~~dg~i  373 (401)
T 4aez_A          306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD------------IPAHDTRVLYSALSPDGRILSTAASDENL  373 (401)
T ss_dssp             EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE------------EECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred             EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE------------ecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            9999999999999984  489999999988765544432            24678899999999999999999999999


Q ss_pred             EEEEc
Q 001366         1087 KVLQM 1091 (1092)
Q Consensus      1087 ~vW~l 1091 (1092)
                      ++|++
T Consensus       374 ~iw~~  378 (401)
T 4aez_A          374 KFWRV  378 (401)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99997

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=4.9e-34  Score=325.35  Aligned_cols=252  Identities=19%  Similarity=0.193  Sum_probs=191.9

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      ..|.+.+.++  |.|+||++..    ...+..++.|+....... .......++..++...+|||++.+++....+...+
T Consensus        15 ~~y~~~~~lG~G~~g~V~~a~~----~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~   90 (328)
T 3fe3_A           15 GNYRLLKTIGKGNFAKVKLARH----ILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLY   90 (328)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEE----TTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             CCEEEEEEEeeCCCEEEEEEEE----CCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEE
Confidence            3456655554  7899999975    223566777765433322 23344557778888899999999877655433333


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||++.++.+
T Consensus        91 ----------------lv~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~  153 (328)
T 3fe3_A           91 ----------------LIMEYASGGEVFDYLVAHG-RMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNI  153 (328)
T ss_dssp             ----------------EEECCCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCE
T ss_pred             ----------------EEEECCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCE
Confidence                            3899999999999997765 47777999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.....                                                                  
T Consensus       154 kl~DFG~a~~~~~~------------------------------------------------------------------  167 (328)
T 3fe3_A          154 KIADFGFSNEFTVG------------------------------------------------------------------  167 (328)
T ss_dssp             EECSTTCCGGGSSS------------------------------------------------------------------
T ss_pred             EEeeccCceecCCC------------------------------------------------------------------
Confidence            99999988654310                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHHHHHHcC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvll~ell~  527 (1092)
                                                            ......+||++|+|||++.+..+ +.++|||||||+||||++
T Consensus       168 --------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~  209 (328)
T 3fe3_A          168 --------------------------------------GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVS  209 (328)
T ss_dssp             --------------------------------------CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHh
Confidence                                                  01125679999999999998776 489999999999999998


Q ss_pred             C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          528 R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      +   |.+.................|  ...++.+.+|+.+||.+||.+|||+.|+|+||||+...+
T Consensus       210 g~~pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~~~  273 (328)
T 3fe3_A          210 GSLPFDGQNLKELRERVLRGKYRIP--FYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHE  273 (328)
T ss_dssp             SSCSSCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHCCSSTTTSCCHHHHTTCTTTTTTCT
T ss_pred             CCCCCCCCCHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHCCCChhHCcCHHHHhcCHhhcCCCc
Confidence            5   555443333333333322222  235789999999999999999999999999999986543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.5e-31  Score=322.32  Aligned_cols=321  Identities=15%  Similarity=0.243  Sum_probs=250.7

Q ss_pred             hccchhhhhhccccccCCCC---cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCC---CEEEEEEcCC-CCEEEEEeC
Q 001366          727 RDRENLFLAQQDQEIQNPTD---RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSAN---VICSISFDRD-EDHFAAAGV  799 (1092)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~~---~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~---~V~sl~fspd-g~~latgg~  799 (1092)
                      .+|...+..+.    ++|++   .++++.|+.+++|+....+....     +.+|..   .|++++|+|+ +++|++|+.
T Consensus       157 ~~~~~~v~~~~----~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (615)
T 1pgu_A          157 SGHSQRINACH----LKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-----DRTHHKQGSFVRDVEFSPDSGEFVITVGS  227 (615)
T ss_dssp             CSCSSCEEEEE----ECSSSSCEEEEEETTTEEEEEETTTBEEEEE-----ECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             ecCCccEEEEE----ECCCCCcEEEEEeCCCcEEEEeCCCcceeee-----ecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence            34444444433    34543   45778999999999887765543     557888   9999999999 999999999


Q ss_pred             CCcEEEEEcCCCCCCCcccccceee-e---cCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeecc----C
Q 001366          800 SKKIKIFEFNALFNDSVDVYYPAVE-M---SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEH----E  871 (1092)
Q Consensus       800 D~~I~Iwd~~~~~~~~~~~~~~~~~-~---~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h----~  871 (1092)
                      |+.|++||+....       ..... .   .|...|.+++|+ + +.+|++++.||+|++||+.+++.+..+..+    .
T Consensus       228 dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  298 (615)
T 1pgu_A          228 DRKISCFDGKSGE-------FLKYIEDDQEPVQGGIFALSWL-D-SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG  298 (615)
T ss_dssp             TCCEEEEETTTCC-------EEEECCBTTBCCCSCEEEEEES-S-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred             CCeEEEEECCCCC-------EeEEecccccccCCceEEEEEc-C-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCccc
Confidence            9999999986521       11112 2   789999999999 6 899999999999999999999999988876    4


Q ss_pred             ccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccC--------------------------
Q 001366          872 KRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAH--------------------------  924 (1092)
Q Consensus       872 ~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~--------------------------  924 (1092)
                      ..+.++.|.  ++..+++++.|+.|++||+.+++.+..+. +...|.+++| |+                          
T Consensus       299 ~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v  375 (615)
T 1pgu_A          299 NQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLI  375 (615)
T ss_dssp             GCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCE
T ss_pred             CceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCce
Confidence            678888885  67899999999999999998877665554 2333333333 21                          


Q ss_pred             -------CC-----------------------------------------------------------------------
Q 001366          925 -------SS-----------------------------------------------------------------------  926 (1092)
Q Consensus       925 -------~~-----------------------------------------------------------------------  926 (1092)
                             +.                                                                       
T Consensus       376 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (615)
T 1pgu_A          376 VSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS  455 (615)
T ss_dssp             EEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred             EEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc
Confidence                   21                                                                       


Q ss_pred             -eEEEEEEC-CCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc
Q 001366          927 -HLLAFGSA-DYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS 1003 (1092)
Q Consensus       927 -~~latgs~-Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~ 1003 (1092)
                       .++++++. |+.|++||+.+.......+.+|...|.+++|+ ++.+|++++.||.|++||+.        .+.++..+.
T Consensus       456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~--------~~~~~~~~~  527 (615)
T 1pgu_A          456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ--------SREVKTSRW  527 (615)
T ss_dssp             SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--------TTEEEECCS
T ss_pred             CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC--------CCcceeEee
Confidence             24444555 55555555554321114557799999999999 77899999999999999998        456677777


Q ss_pred             C-CCCCeEEEEEec----------CCCEEEEEecCCcEEEEeCCCC-CceeeeeccccCCCCCccccCCCCCCEEEEEEe
Q 001366         1004 G-HTNEKNFVGLST----------ADGYIACGSESNEVYAYHRSLP-MPITSYKFGSIDPISGKETDDDNGLFVSSVCWR 1071 (1092)
Q Consensus      1004 ~-h~~~V~~v~~sp----------dg~~lasgs~Dg~I~Iwd~~~~-~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~s 1071 (1092)
                      + |...|++++|+|          ++.+||+|+.|+.|++|++..+ .++..              ..+|...|++++|+
T Consensus       528 ~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------~~~h~~~v~~l~~s  593 (615)
T 1pgu_A          528 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA--------------LNAHKDGVNNLLWE  593 (615)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE--------------TTSSTTCEEEEEEE
T ss_pred             cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh--------------hhcCccceEEEEEc
Confidence            7 999999999999          9999999999999999999876 44433              25678899999999


Q ss_pred             CCCCEEEEEecCCeEEEEEc
Q 001366         1072 RRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1072 pd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |++. |++++.||.|++|++
T Consensus       594 ~~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          594 TPST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             ETTE-EEEEETTSCEEEEEE
T ss_pred             CCCC-eEEecCCceEEEEee
Confidence            9999 999999999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.3e-32  Score=313.97  Aligned_cols=277  Identities=12%  Similarity=0.119  Sum_probs=227.4

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 001366          781 VICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT  860 (1092)
Q Consensus       781 ~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t  860 (1092)
                      .+++++|+|++++|++|+.|+.|++||+.....       ...... ...+....|+++ +++|++|+.||.|++||+.+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------~~~~~~-~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~  128 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG-------SKMLKR-ADYTAVDTAKLQ-MRRFILGTTEGDIKVLDSNF  128 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEET-------TTTSCS-CCEEEEEEECSS-SCEEEEEETTSCEEEECTTS
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccce-------eeEEec-CCceEEEEEecC-CCEEEEEECCCCEEEEeCCC
Confidence            345789999999999999999999999875211       111112 233444457776 89999999999999999999


Q ss_pred             CceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEE
Q 001366          861 GQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTY  939 (1092)
Q Consensus       861 g~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~  939 (1092)
                      ++....+.+|...|++++|+| ++.+|++|+.|++|++||+++++.+..+. |...|.+++|+|++. +|++|+.|+.|+
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~  206 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIR  206 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT-EEEEEETTSCEE
T ss_pred             cceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEE
Confidence            999888889999999999999 88999999999999999999999998887 678899999999985 899999999999


Q ss_pred             EEEcCCCCcceEEecC---CCCCeEEEEE---------------------c-CCCEEEEEECCCeEEEEEcCCCCCCCCC
Q 001366          940 CYDLRNARAPWCVLAG---HEKAVSYVKF---------------------L-DSGTLVTASTDNKLKLWDLKRTSHTGPS  994 (1092)
Q Consensus       940 vwDlr~~~~~~~~l~~---H~~~V~~v~f---------------------s-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~  994 (1092)
                      +||+++++. +..+..   |...|.+++|                     + ++.+|++|+.||.|++||+++       
T Consensus       207 iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-------  278 (420)
T 3vl1_A          207 LWECGTGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS-------  278 (420)
T ss_dssp             EEETTTTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT-------
T ss_pred             EeECCCCce-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC-------
Confidence            999998753 445543   4555666655                     4 456899999999999999984       


Q ss_pred             CCceeEEE-cCCCCCeEEEEEecCCC-EEEEEecCCcEEEEeCCCCCc-eeeeeccccCCCCCccccCCCCCCEEEEEEe
Q 001366          995 TNACSLTF-SGHTNEKNFVGLSTADG-YIACGSESNEVYAYHRSLPMP-ITSYKFGSIDPISGKETDDDNGLFVSSVCWR 1071 (1092)
Q Consensus       995 ~~~~~~~l-~~h~~~V~~v~~spdg~-~lasgs~Dg~I~Iwd~~~~~~-i~~~~~~~~~~i~~~~~~~~h~~~V~sva~s 1071 (1092)
                       ......+ .+|...|++++|+|++. +|++|+.||.|++||+..+.. +..+.             ..|...|+++.| 
T Consensus       279 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------------~~~~~~v~~~~~-  343 (420)
T 3vl1_A          279 -KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL-------------INEGTPINNVYF-  343 (420)
T ss_dssp             -CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-------------ESTTSCEEEEEE-
T ss_pred             -CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh-------------ccCCCCceEEEe-
Confidence             3344444 45889999999999998 999999999999999987653 44433             235678888865 


Q ss_pred             CCCCEEEEEecCCeEEEEEc
Q 001366         1072 RRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1072 pd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +++.+|++++.||.|++|++
T Consensus       344 ~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          344 AAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             ETTEEEEEETTTEEEEEEEE
T ss_pred             CCCCEEEEecCCccEEEEec
Confidence            57889999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2e-31  Score=303.19  Aligned_cols=287  Identities=14%  Similarity=0.274  Sum_probs=237.7

Q ss_pred             eecCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC
Q 001366          774 EFNNSANVICSISFDRD---EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD  850 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspd---g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D  850 (1092)
                      .+.+|...|++++|+|+   |++||+|+.|+.|+|||+....     ........+|...|.+++|+|+ +.+|++++.|
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d  107 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----QTIPKAQQMHTGPVLDVCWSDD-GSKVFTASCD  107 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----CEEEEEEEECSSCEEEEEECTT-SSEEEEEETT
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----ceeEEEeccccCCEEEEEECcC-CCEEEEEcCC
Confidence            46789999999999999   6999999999999999987411     1122345679999999999997 8999999999


Q ss_pred             CcEEEEECCCCceEEEeeccCccEEEEEE--ecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeE
Q 001366          851 GVVKLWDACTGQTVSHYIEHEKRAWSVDF--SQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHL  928 (1092)
Q Consensus       851 gtV~IWD~~tg~~i~~l~~h~~~V~sv~f--sp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~  928 (1092)
                      |+|++||+.+++.+. +..|...|++++|  +| ++.+|++|+.|+.|++||+++++++..+.....+.++.+.++   .
T Consensus       108 g~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~  182 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP---M  182 (368)
T ss_dssp             SEEEEEETTTTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT---E
T ss_pred             CcEEEEEcCCCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC---e
Confidence            999999999988776 5579999999999  77 778899999999999999999999999998888888888753   6


Q ss_pred             EEEEECCCeEEEEEcCCCCcceEEe-cCCCCCeEEEEEc-CCC----EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEE
Q 001366          929 LAFGSADYRTYCYDLRNARAPWCVL-AGHEKAVSYVKFL-DSG----TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTF 1002 (1092)
Q Consensus       929 latgs~Dg~I~vwDlr~~~~~~~~l-~~H~~~V~~v~fs-~~~----~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l 1002 (1092)
                      +++++.++.+++||++......... ..+...+.++.+. ...    .+++++.||.|++||++...     .......+
T Consensus       183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~-----~~~~~~~~  257 (368)
T 3mmy_A          183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN-----PAKDNFTF  257 (368)
T ss_dssp             EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC-----HHHHSEEE
T ss_pred             eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC-----ccccceee
Confidence            8889999999999999765443333 2344556666664 232    39999999999999998432     11456677


Q ss_pred             cCCCC------------CeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEE
Q 001366         1003 SGHTN------------EKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCW 1070 (1092)
Q Consensus      1003 ~~h~~------------~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~ 1070 (1092)
                      .+|..            .|++++|+|++.+|++|+.||.|++||+..++.+..+              ..|...|++++|
T Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------~~~~~~v~~~~~  323 (368)
T 3mmy_A          258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS--------------EQLDQPISACCF  323 (368)
T ss_dssp             ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC--------------CCCSSCEEEEEE
T ss_pred             eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe--------------cCCCCCceEEEE
Confidence            77776            7999999999999999999999999999988776644              357789999999


Q ss_pred             eCCCCEEEEEecCCeEEEEE
Q 001366         1071 RRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1071 spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      +|++.+|++|+.|+..+.|+
T Consensus       324 s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          324 NHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             CTTSSCEEEEECCCSTTCGG
T ss_pred             CCCCCeEEEEeccccccccc
Confidence            99999999999998665554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.3e-30  Score=291.40  Aligned_cols=276  Identities=17%  Similarity=0.264  Sum_probs=226.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 001366          782 ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTG  861 (1092)
Q Consensus       782 V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg  861 (1092)
                      +++|+|++++ +||+| .|++|+|||+.+..     ........+|...|++++|+|+ +++|++|+.||+|+|||+.++
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~-----~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGD-----ILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQ   99 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCC-----EEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTT
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCC-----EEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCc
Confidence            5679999886 77776 59999999987521     1111223367888999999998 899999999999999999999


Q ss_pred             ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce-eeeEe-cCCceEEEEEccCCCeEEEEEECCCeEE
Q 001366          862 QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS-LATIK-NIANVCCVQFSAHSSHLLAFGSADYRTY  939 (1092)
Q Consensus       862 ~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~-l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~  939 (1092)
                      +++..+.+|...+.++.+.   +..+++|+.++.+++|+...... +..+. +...+.++.|++++. ++++++.|+.|+
T Consensus       100 ~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~  175 (318)
T 4ggc_A          100 KRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN  175 (318)
T ss_dssp             EEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             eeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCccee
Confidence            9999999999998877765   47999999999999999987644 34444 678899999999995 899999999999


Q ss_pred             EEEcCCCCc---ceEEecCCCCCeEEEEEcC--CCE--EEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEE
Q 001366          940 CYDLRNARA---PWCVLAGHEKAVSYVKFLD--SGT--LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012 (1092)
Q Consensus       940 vwDlr~~~~---~~~~l~~H~~~V~~v~fs~--~~~--L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v 1012 (1092)
                      +||+++++.   .......|...|.++.+++  ...  +++++.+++|++||...        ... .....+...+..+
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~--------~~~-~~~~~~~~~v~~~  246 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--------GAC-LSAVDAHSQVCSI  246 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT--------CCE-EEEEECSSCEEEE
T ss_pred             EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc--------ccc-cccccceeeeeee
Confidence            999987653   3455677889999999983  233  34667899999999983        223 3334577789999


Q ss_pred             EEecCCCEEEEEe--cCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1013 GLSTADGYIACGS--ESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1013 ~~spdg~~lasgs--~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      .|+|++..+++++  .|+.|+|||+.+++++..+              .+|...|++|+|+|++.+||||+.||+|+||+
T Consensus       247 ~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l--------------~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          247 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--------------KGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE--------------CCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             eecccccceEEEEEcCCCEEEEEECCCCcEEEEE--------------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            9999999877655  7999999999998887755              46889999999999999999999999999999


Q ss_pred             cC
Q 001366         1091 MV 1092 (1092)
Q Consensus      1091 lv 1092 (1092)
                      +.
T Consensus       313 ~~  314 (318)
T 4ggc_A          313 CF  314 (318)
T ss_dssp             CS
T ss_pred             CC
Confidence            73

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.1e-31  Score=320.88  Aligned_cols=340  Identities=14%  Similarity=0.129  Sum_probs=258.0

Q ss_pred             chhhhccchh-hhhhccccccCC--CC--cEEeEcCCeEEEEEcccce---EEeeEEeeeecCCCCCEEEEEEcCCCCEE
Q 001366          723 NDLLRDRENL-FLAQQDQEIQNP--TD--RLGAFFDGLCKYARYSKFE---VQGMLRTGEFNNSANVICSISFDRDEDHF  794 (1092)
Q Consensus       723 ~~~l~~~~~~-~~~~~~~~~~~~--~~--~l~~~~D~~~k~w~~~~~~---~~~~l~~~~l~~h~~~V~sl~fspdg~~l  794 (1092)
                      ...+.+|... +..+.    ++|  ++  .+++..|+.+++|++....   .........+..|...|.+++|+|++++|
T Consensus        56 ~~~~~~h~~~~v~~~~----~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  131 (615)
T 1pgu_A           56 VVQFTGHGSSVVTTVK----FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL  131 (615)
T ss_dssp             EEEECTTTTSCEEEEE----ECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ceEEecCCCceEEEEE----ECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEE
Confidence            3445666666 65544    345  44  3467789999999985320   00011122466899999999999999999


Q ss_pred             EEEeCC----CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeecc
Q 001366          795 AAAGVS----KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEH  870 (1092)
Q Consensus       795 atgg~D----~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h  870 (1092)
                      ++++.+    +.|.+||...         ......+|...|.+++|+|++..+|++++.|++|++||+.+++.+..+.+|
T Consensus       132 ~~~~~~~~~~~~v~~~d~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~  202 (615)
T 1pgu_A          132 CVVGEGRDNFGVFISWDSGN---------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH  202 (615)
T ss_dssp             EEEECCSSCSEEEEETTTCC---------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS
T ss_pred             EEeccCCCCccEEEEEECCC---------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeeccc
Confidence            999988    6888887322         223345789999999999984448999999999999999999999999999


Q ss_pred             Cc---cEEEEEEecCC-CCEEEEEeCCCcEEEEecCCCceeeeE-----ecCCceEEEEEccCCCeEEEEEECCCeEEEE
Q 001366          871 EK---RAWSVDFSQVH-PTKLASGSDDCSVKLWNINEKNSLATI-----KNIANVCCVQFSAHSSHLLAFGSADYRTYCY  941 (1092)
Q Consensus       871 ~~---~V~sv~fsp~~-~~~laSgs~Dg~I~iWDl~~~~~l~~l-----~~~~~V~sl~fsp~~~~~latgs~Dg~I~vw  941 (1092)
                      ..   .|++++|+| + +.+|++++.|+.|++||+++++.+..+     .+...|.+++|+ ++ .+|++++.|+.|++|
T Consensus       203 ~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~w  279 (615)
T 1pgu_A          203 HKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVW  279 (615)
T ss_dssp             SCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEE
T ss_pred             CCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEE
Confidence            99   999999999 6 899999999999999999999999998     677899999999 76 489999999999999


Q ss_pred             EcCCCCcc--------------------------------------------eEEecCCCC-------------------
Q 001366          942 DLRNARAP--------------------------------------------WCVLAGHEK-------------------  958 (1092)
Q Consensus       942 Dlr~~~~~--------------------------------------------~~~l~~H~~-------------------  958 (1092)
                      |+++.+..                                            +..+.+|..                   
T Consensus       280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i  359 (615)
T 1pgu_A          280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRI  359 (615)
T ss_dssp             ETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCE
T ss_pred             ECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeE
Confidence            99865321                                            112233333                   


Q ss_pred             --------------CeEEEEEcCCCEEEEEECCCeEEEEEcCCCCC----------------------------------
Q 001366          959 --------------AVSYVKFLDSGTLVTASTDNKLKLWDLKRTSH----------------------------------  990 (1092)
Q Consensus       959 --------------~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~----------------------------------  990 (1092)
                                    .|.+++|.++..|++++.|+.|++||+.+...                                  
T Consensus       360 ~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  439 (615)
T 1pgu_A          360 MEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI  439 (615)
T ss_dssp             EETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCce
Confidence                          34444444355566666666666666542110                                  


Q ss_pred             --------------------------CCC------CCCcee-EEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCC
Q 001366          991 --------------------------TGP------STNACS-LTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSL 1037 (1092)
Q Consensus       991 --------------------------~~~------~~~~~~-~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~ 1037 (1092)
                                                .+.      ...... ..+.+|...|++++|+|++++|++|+.|+.|++|++..
T Consensus       440 ~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  519 (615)
T 1pgu_A          440 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS  519 (615)
T ss_dssp             EEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC
Confidence                                      000      000011 44567899999999999999999999999999999998


Q ss_pred             CCceeeeeccccCCCCCccccCCCCCCEEEEEEeC----------CCCEEEEEecCCeEEEEEc
Q 001366         1038 PMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR----------RSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1038 ~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp----------d~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++.+..+.             ..|...|++++|+|          ++.+|++|+.||.|+||++
T Consensus       520 ~~~~~~~~-------------~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  570 (615)
T 1pgu_A          520 REVKTSRW-------------AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  570 (615)
T ss_dssp             TEEEECCS-------------CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             CcceeEee-------------cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence            87765432             12788999999999          9999999999999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.1e-31  Score=335.84  Aligned_cols=287  Identities=21%  Similarity=0.322  Sum_probs=247.6

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|...|++++|+|++.+||+|+.|+.|+|||+.+.       .......+|...|.+++|+|+ +.+|++++.||+|
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i   79 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-------VEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRI   79 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEE
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC-------ceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeE
Confidence            45689999999999999999999999999999998651       222344578999999999998 8999999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC-ceeeeEe-cCCceEEEEEccCCCeEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK-NSLATIK-NIANVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~-~~l~~l~-~~~~V~sl~fsp~~~~~lat  931 (1092)
                      ++||+.+++.+..+.+|...|++++|+| ++..|++|+.||+|++||+.++ .....+. +...|.+++|+|++..+|++
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  158 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence            9999999999999999999999999999 8899999999999999999987 5555665 67889999999943369999


Q ss_pred             EECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc---CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCC
Q 001366          932 GSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL---DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNE 1008 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs---~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~ 1008 (1092)
                      ++.||.|++||+++..........|...|.+++|+   ++.+|++++.||.|++||+.        .+.++..+.+|...
T Consensus       159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~--------~~~~~~~~~~~~~~  230 (814)
T 3mkq_A          159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ--------TKSCVATLEGHMSN  230 (814)
T ss_dssp             EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT--------TTEEEEEEECCSSC
T ss_pred             EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC--------CCcEEEEEcCCCCC
Confidence            99999999999988766555555566899999998   46689999999999999998        45678889999999


Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCE-EEEEecCCeEE
Q 001366         1009 KNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDM-VVAANSSGCIK 1087 (1092)
Q Consensus      1009 V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~-Lasgs~DG~V~ 1087 (1092)
                      |.+++|+|++.+|++|+.||.|++||..+++.+..+.              .|...|++++|+|++.. +++++.|+.+.
T Consensus       231 v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  296 (814)
T 3mkq_A          231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN--------------VGLERSWCIATHPTGRKNYIASGFDNGFT  296 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC--------------CSSSSEEEEEECTTCGGGEEEEEETTEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--------------cCCCcEEEEEEccCCCceEEEEEeCCCEE
Confidence            9999999999999999999999999999888776553              34568999999999873 24555577788


Q ss_pred             EEEc
Q 001366         1088 VLQM 1091 (1092)
Q Consensus      1088 vW~l 1091 (1092)
                      +|++
T Consensus       297 ~~~~  300 (814)
T 3mkq_A          297 VLSL  300 (814)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.5e-31  Score=352.88  Aligned_cols=340  Identities=15%  Similarity=0.221  Sum_probs=277.4

Q ss_pred             hhhccchhhhhhccccccCCCCc--EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 001366          725 LLRDRENLFLAQQDQEIQNPTDR--LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKK  802 (1092)
Q Consensus       725 ~l~~~~~~~~~~~~~~~~~~~~~--l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~  802 (1092)
                      .+.+|.+.+..+.    ++|++.  ++++.|+++++|+....+...     .+.+|...|.+++|+|+|++||+|+.|++
T Consensus       610 ~~~~h~~~v~~~~----~s~~~~~l~s~~~d~~i~vw~~~~~~~~~-----~~~~h~~~v~~~~~s~~~~~l~s~~~d~~  680 (1249)
T 3sfz_A          610 VVRPHTDAVYHAC----FSQDGQRIASCGADKTLQVFKAETGEKLL-----DIKAHEDEVLCCAFSSDDSYIATCSADKK  680 (1249)
T ss_dssp             EECCCSSCEEEEE----ECTTSSEEEEEETTSCEEEEETTTCCEEE-----EECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEecccccEEEEE----ECCCCCEEEEEeCCCeEEEEECCCCCEEE-----EeccCCCCEEEEEEecCCCEEEEEeCCCe
Confidence            4556666665544    355554  466799999999998766544     35589999999999999999999999999


Q ss_pred             EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecC-CCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEec
Q 001366          803 IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNY-IKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ  881 (1092)
Q Consensus       803 I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp  881 (1092)
                      |+|||+.+.       .......+|...|.+++|+|+ ...++++|+.||+|++||+.+++++..+.+|...|++++|+|
T Consensus       681 v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp  753 (1249)
T 3sfz_A          681 VKIWDSATG-------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP  753 (1249)
T ss_dssp             EEEEETTTC-------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS
T ss_pred             EEEEECCCC-------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec
Confidence            999998752       223345579999999999995 266899999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCceeeeEec--------------CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCC
Q 001366          882 VHPTKLASGSDDCSVKLWNINEKNSLATIKN--------------IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNAR  947 (1092)
Q Consensus       882 ~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~--------------~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~  947 (1092)
                       ++..|++|+.||+|++||++++.....+..              ...+.+++|+|++. .+++++ ++.+.+||+.++.
T Consensus       754 -~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~-~~~v~~~d~~~~~  830 (1249)
T 3sfz_A          754 -DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD-KIIVAA-KNKVLLFDIHTSG  830 (1249)
T ss_dssp             -STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS-EEEEEE-TTEEEEEETTTCC
T ss_pred             -CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC-EEEEEc-CCcEEEEEecCCC
Confidence             889999999999999999999887776652              22688999999996 666665 7899999999887


Q ss_pred             cceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEec
Q 001366          948 APWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE 1026 (1092)
Q Consensus       948 ~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~ 1026 (1092)
                      .......+|...|.+++|+ ++..+++++.|+.|++||+.        .+.++..+.+|...|++++|+|+|.+|++++.
T Consensus       831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~--------~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~  902 (1249)
T 3sfz_A          831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID--------SRLKVADCRGHLSWVHGVMFSPDGSSFLTASD  902 (1249)
T ss_dssp             EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT--------TTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC--------CCceeeecCCCccceEEEEECCCCCEEEEEeC
Confidence            6555666999999999999 67789999999999999998        45678889999999999999999999999999


Q ss_pred             CCcEEEEeCCCCC-----------------------------------------------ceeeeecc---------cc-
Q 001366         1027 SNEVYAYHRSLPM-----------------------------------------------PITSYKFG---------SI- 1049 (1092)
Q Consensus      1027 Dg~I~Iwd~~~~~-----------------------------------------------~i~~~~~~---------~~- 1049 (1092)
                      |+.|++|+.....                                               .+....+.         .. 
T Consensus       903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~  982 (1249)
T 3sfz_A          903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED  982 (1249)
T ss_dssp             TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence            9999999954210                                               01111110         00 


Q ss_pred             ------CCCCCc--cccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1050 ------DPISGK--ETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1050 ------~~i~~~--~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                            +...+.  ....+|...|++++|+|++++|++++.||.|++|++
T Consensus       983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A          983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp             SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred             CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence                  001111  234578899999999999999999999999999986

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.4e-34  Score=323.45  Aligned_cols=251  Identities=17%  Similarity=0.166  Sum_probs=190.7

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.+  ++.|+||++...    ..+..++.|+...  ...+.....++..++...+|||++.+++........+  
T Consensus         6 ~y~~~~~lG~G~~g~Vy~~~~~----~~~~~~a~K~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~--   77 (321)
T 1tki_A            6 KYMIAEDLGRGEFGIVHRCVET----SSKKTYMAKFVKV--KGTDQVLVKKEISILNIARHRNILHLHESFESMEELV--   77 (321)
T ss_dssp             TEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECC--CTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEE--
T ss_pred             ceEeeeEEecCCCeEEEEEEEC----CCCcEEEEEEEec--CcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEE--
Confidence            34444444  478999999752    2244555555432  1223344556777788889999999877665443333  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc--CCcE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ--SNQV  368 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~--~~~v  368 (1092)
                                    .+||||+|++|.+++...+..+++.+++.++.||+.||.|||++||+||||||+|||++.  ++.+
T Consensus        78 --------------lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~  143 (321)
T 1tki_A           78 --------------MIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTI  143 (321)
T ss_dssp             --------------EEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCE
T ss_pred             --------------EEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCE
Confidence                          389999999999999877667888899999999999999999999999999999999987  7899


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||+++.+...                                                                  
T Consensus       144 kl~Dfg~a~~~~~~------------------------------------------------------------------  157 (321)
T 1tki_A          144 KIIEFGQARQLKPG------------------------------------------------------------------  157 (321)
T ss_dssp             EECCCTTCEECCTT------------------------------------------------------------------
T ss_pred             EEEECCCCeECCCC------------------------------------------------------------------
Confidence            99999998764310                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                            .......||+.|+|||++.+..++.++|||||||+||||+++
T Consensus       158 --------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g  199 (321)
T 1tki_A          158 --------------------------------------DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSG  199 (321)
T ss_dssp             --------------------------------------CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhC
Confidence                                                  011245789999999999998899999999999999999986


Q ss_pred             ---CCcHHHHHHHHHhccccCCC--CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILP--PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                         |..................+  +.+...++.+.+|+.+||++||.+|||+.|+|+||||.+..
T Consensus       200 ~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~~  265 (321)
T 1tki_A          200 INPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKI  265 (321)
T ss_dssp             SCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSCG
T ss_pred             CCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcChhhccCc
Confidence               54443333333333222221  23456788999999999999999999999999999998653

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.4e-33  Score=316.80  Aligned_cols=250  Identities=14%  Similarity=0.117  Sum_probs=188.7

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||++...    ..+..++.|++..... .......++..++...+||||+.+++........+   
T Consensus        22 y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~---   93 (297)
T 3fxz_A           22 YTRFEKIGQGASGTVYTAMDV----ATGQEVAIRQMNLQQQ-PKKELIINEILVMRENKNPNIVNYLDSYLVGDELW---   93 (297)
T ss_dssp             BCCCEEEEEETTEEEEEEEBT----TTCCEEEEEEEEGGGC-SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE---
T ss_pred             eeeeeeeccCCCeEEEEEEEC----CCCcEEEEEEeecccc-cHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEE---
Confidence            5444444  478999999642    1245566665533222 22334456667788899999999887655443333   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+||||+|++|.+++...  .++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+
T Consensus        94 -------------lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~  158 (297)
T 3fxz_A           94 -------------VVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLT  158 (297)
T ss_dssp             -------------EEEECCTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEEC
T ss_pred             -------------EEEECCCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEe
Confidence                         389999999999999775  47888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++......                                                                    
T Consensus       159 Dfg~~~~~~~~~--------------------------------------------------------------------  170 (297)
T 3fxz_A          159 DFGFCAQITPEQ--------------------------------------------------------------------  170 (297)
T ss_dssp             CCTTCEECCSTT--------------------------------------------------------------------
T ss_pred             eCCCceecCCcc--------------------------------------------------------------------
Confidence            999887643100                                                                    


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                         ......+||+.|+|||++.+..++.++|||||||+||||+++   
T Consensus       171 -----------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~p  215 (297)
T 3fxz_A          171 -----------------------------------SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP  215 (297)
T ss_dssp             -----------------------------------CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             -----------------------------------cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence                                               001145789999999999999999999999999999999986   


Q ss_pred             CCcHHHHHHHHHhccccC-CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          529 FDSERALAAAMSDLRDRI-LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      |................. ..+.....++.+.+|+.+||++||.+|||+.|+|+||||....
T Consensus       216 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~~~~~~~  277 (297)
T 3fxz_A          216 YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIAK  277 (297)
T ss_dssp             TTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             CCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhcccC
Confidence            444333333333222222 1222334578889999999999999999999999999998654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-31  Score=304.12  Aligned_cols=296  Identities=18%  Similarity=0.229  Sum_probs=240.6

Q ss_pred             hhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCC----CCEEEEEeC
Q 001366          726 LRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRD----EDHFAAAGV  799 (1092)
Q Consensus       726 l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspd----g~~latgg~  799 (1092)
                      ..+|...+.++.+........  .+.+..++.+++|+....+....+.......|...|++++|+|+    +.+|++|+.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            345666666554421100112  45666788999999987766666665445568899999999999    679999999


Q ss_pred             CCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEe---eccCccEEE
Q 001366          800 SKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHY---IEHEKRAWS  876 (1092)
Q Consensus       800 D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l---~~h~~~V~s  876 (1092)
                      |+.|+|||+...       .......+|...|.+++|+|+++.+|++++.||+|++||+.+++.+..+   .+|...|.+
T Consensus        94 dg~i~v~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  166 (366)
T 3k26_A           94 RGIIRIINPITM-------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS  166 (366)
T ss_dssp             TCEEEEECTTTC-------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred             CCEEEEEEchhc-------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence            999999998752       2223445799999999999944899999999999999999999998888   689999999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-----------------------------cCCceEEEEEccCCCe
Q 001366          877 VDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-----------------------------NIANVCCVQFSAHSSH  927 (1092)
Q Consensus       877 v~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-----------------------------~~~~V~sl~fsp~~~~  927 (1092)
                      ++|+| ++..|++++.|+.|++||+++++.+..+.                             +...|.+++|+  + .
T Consensus       167 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~  242 (366)
T 3k26_A          167 ADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-D  242 (366)
T ss_dssp             EEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-T
T ss_pred             EEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-C
Confidence            99999 88999999999999999999876654433                             67789999999  4 4


Q ss_pred             EEEEEECCCeEEEEEcCCCCc-------------ceEEecCCCCCeEEEEEc-C--CCEEEEEECCCeEEEEEcCCCCCC
Q 001366          928 LLAFGSADYRTYCYDLRNARA-------------PWCVLAGHEKAVSYVKFL-D--SGTLVTASTDNKLKLWDLKRTSHT  991 (1092)
Q Consensus       928 ~latgs~Dg~I~vwDlr~~~~-------------~~~~l~~H~~~V~~v~fs-~--~~~L~Sgs~Dg~I~vWDl~~~~~~  991 (1092)
                      ++++++.|+.|++||+++...             .+..+.+|...|.+++|+ +  +.+|++|+.||.|++||+..... 
T Consensus       243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~-  321 (366)
T 3k26_A          243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP-  321 (366)
T ss_dssp             EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG-
T ss_pred             EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC-
Confidence            899999999999999987643             256678899999999998 5  78999999999999999985432 


Q ss_pred             CCCCCceeEEEcCC--CCCeEEEEEecCCCEEEEEecCCcEEEEeCC
Q 001366          992 GPSTNACSLTFSGH--TNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       992 ~~~~~~~~~~l~~h--~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                         .......+.+|  ...|++++|+|++.+|++|+.||.|++||+.
T Consensus       322 ---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          322 ---HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ---GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ---ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence               12244577777  7899999999999999999999999999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.2e-32  Score=309.24  Aligned_cols=252  Identities=18%  Similarity=0.220  Sum_probs=204.7

Q ss_pred             eecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc--eEEEeeccCccEEEEEEecC-CCCEEEEEeCCCcEEEEe
Q 001366          824 EMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ--TVSHYIEHEKRAWSVDFSQV-HPTKLASGSDDCSVKLWN  900 (1092)
Q Consensus       824 ~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~--~i~~l~~h~~~V~sv~fsp~-~~~~laSgs~Dg~I~iWD  900 (1092)
                      ..+|...|++++|+|+ +++||+|+.|++|+|||+.++.  .+..+.+|...|++++|++. ++.+|+||+.|++|++||
T Consensus         9 ~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             -----CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             cccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            4578999999999998 8999999999999999998875  56788999999999999852 478999999999999999


Q ss_pred             cCCCc--eeeeEe-cCCceEEEEEccCC-CeEEEEEECCCeEEEEEcCCCCc--ceEEecCCCCCeEEEEEcCC------
Q 001366          901 INEKN--SLATIK-NIANVCCVQFSAHS-SHLLAFGSADYRTYCYDLRNARA--PWCVLAGHEKAVSYVKFLDS------  968 (1092)
Q Consensus       901 l~~~~--~l~~l~-~~~~V~sl~fsp~~-~~~latgs~Dg~I~vwDlr~~~~--~~~~l~~H~~~V~~v~fs~~------  968 (1092)
                      ++++.  .+..+. |...|.+++|+|++ ..+|++|+.|+.|++||++....  ....+.+|...|.+++|++.      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            99874  444554 67889999999983 35899999999999999987532  13456789999999999853      


Q ss_pred             ------------CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCC----CEEEEEecCCcEEE
Q 001366          969 ------------GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTAD----GYIACGSESNEVYA 1032 (1092)
Q Consensus       969 ------------~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg----~~lasgs~Dg~I~I 1032 (1092)
                                  .+|++|+.|++|++||++...     ...++..+.+|...|++++|+|++    .+||+|+.|++|+|
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-----~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-----QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTS-----CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCC-----ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                        589999999999999997321     123567788999999999999986    79999999999999


Q ss_pred             EeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1033 YHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1033 wd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |+......-..          .......|...|++++|+|++.+||+|+.||.|+||++
T Consensus       243 w~~~~~~~~~~----------~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          243 WTCDDASSNTW----------SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             EECSSTTCCCC----------BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             EEccCccccch----------hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence            99865311000          00112346788999999999999999999999999985

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=5.4e-33  Score=329.44  Aligned_cols=252  Identities=18%  Similarity=0.114  Sum_probs=189.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      +|.+.+.++  |.|+||++...    ..+..++.|+....... .+.....++..++...+||||+.+++....+...+ 
T Consensus        12 ~Y~i~~~LG~G~fg~V~~~~~~----~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~-   86 (444)
T 3soa_A           12 EYQLFEELGKGAFSVVRRCVKV----LAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHY-   86 (444)
T ss_dssp             HEEEEEEEEEC--CEEEEEEET----TTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEE-
T ss_pred             CeEEEEEeccCCCeEEEEEEEC----CCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEE-
Confidence            455555444  78999999652    22455666554332222 22344556777888889999999877655443333 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc---cCC
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL---QSN  366 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~---~~~  366 (1092)
                                     .+||||.|++|.++|...+ .+++.++..+++||+.||+|||++||+||||||+|||++   .++
T Consensus        87 ---------------lv~E~~~gg~L~~~i~~~~-~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~  150 (444)
T 3soa_A           87 ---------------LIFDLVTGGELFEDIVARE-YYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGA  150 (444)
T ss_dssp             ---------------EEECCCBCCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTC
T ss_pred             ---------------EEEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCC
Confidence                           3899999999999998765 477889999999999999999999999999999999998   457


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++.....                                                                
T Consensus       151 ~vkL~DFG~a~~~~~~----------------------------------------------------------------  166 (444)
T 3soa_A          151 AVKLADFGLAIEVEGE----------------------------------------------------------------  166 (444)
T ss_dssp             CEEECCCSSCBCCCTT----------------------------------------------------------------
T ss_pred             cEEEccCceeEEecCC----------------------------------------------------------------
Confidence            8999999998764310                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                             .......+||++|+|||++.+..++.++|||||||+||+|+
T Consensus       167 ---------------------------------------~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell  207 (444)
T 3soa_A          167 ---------------------------------------QQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILL  207 (444)
T ss_dssp             ---------------------------------------CCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHH
Confidence                                                   00112467999999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhcc--ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLR--DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ++   |..............  ....++.+...++.+.+|+.+||++||.+|||+.|+|+||||...
T Consensus       208 ~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~~~~~  274 (444)
T 3soa_A          208 VGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWISHR  274 (444)
T ss_dssp             HSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSCTTHHH
T ss_pred             hCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcCccccCC
Confidence            86   444333322222222  223334556778999999999999999999999999999999764

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.6e-33  Score=314.93  Aligned_cols=245  Identities=16%  Similarity=0.168  Sum_probs=181.1

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .++.|.||++...    ..+..++.|+...... ........++..++...+|||++.+++....+...+          
T Consensus        12 ~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~----------   77 (292)
T 3o0g_A           12 EGTYGTVFKAKNR----ETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLT----------   77 (292)
T ss_dssp             ECSSSEEEEEEET----TTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE----------
T ss_pred             CCCCeEEEEEEEC----CCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEE----------
Confidence            3478999999763    2355566666543332 222345567777888999999999877755443333          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            ++|||++| +|.+++......++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.
T Consensus        78 ------lv~e~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~  150 (292)
T 3o0g_A           78 ------LVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARA  150 (292)
T ss_dssp             ------EEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             ------EEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccccee
Confidence                  38999986 66667766556788889999999999999999999999999999999999999999999999876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ...+.                                                                           
T Consensus       151 ~~~~~---------------------------------------------------------------------------  155 (292)
T 3o0g_A          151 FGIPV---------------------------------------------------------------------------  155 (292)
T ss_dssp             CCSCC---------------------------------------------------------------------------
T ss_pred             cCCcc---------------------------------------------------------------------------
Confidence            43100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC-CCccccchhhhHHHHHHcCC----CCcHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV-CTTSSNIYSLGVLFFELFGR----FDSER  533 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~-~t~~sDIwSLGvll~ell~~----f~~~~  533 (1092)
                                                  ...+...||++|+|||++.+.. ++.++|||||||+||||+++    |....
T Consensus       156 ----------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~  207 (292)
T 3o0g_A          156 ----------------------------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND  207 (292)
T ss_dssp             ----------------------------SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSS
T ss_pred             ----------------------------ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCC
Confidence                                        0011457899999999998865 89999999999999999974    33332


Q ss_pred             HHHHHHHhcc--ccC-------------------------CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          534 ALAAAMSDLR--DRI-------------------------LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       534 ~~~~~~~~~~--~~~-------------------------~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      .........+  ...                         +.......++.+.+|+.+||++||.+|||++|+|+||||.
T Consensus       208 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~  287 (292)
T 3o0g_A          208 VDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFS  287 (292)
T ss_dssp             HHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGT
T ss_pred             HHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcCcccc
Confidence            2222211111  100                         0011234568889999999999999999999999999998


Q ss_pred             hh
Q 001366          587 EF  588 (1092)
Q Consensus       587 ~~  588 (1092)
                      +.
T Consensus       288 ~~  289 (292)
T 3o0g_A          288 DF  289 (292)
T ss_dssp             TC
T ss_pred             cC
Confidence            74

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-31  Score=356.06  Aligned_cols=313  Identities=16%  Similarity=0.247  Sum_probs=263.4

Q ss_pred             cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCC-----------
Q 001366          747 RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDS-----------  815 (1092)
Q Consensus       747 ~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~-----------  815 (1092)
                      .++++.|+.+++|+........     .+.+|...|++++|+|++++|++|+.|++|++||+.......           
T Consensus       716 l~sg~~d~~v~vwd~~~~~~~~-----~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~  790 (1249)
T 3sfz_A          716 LATGSNDFFLKLWDLNQKECRN-----TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS  790 (1249)
T ss_dssp             EEEEETTSCEEEEETTSSSEEE-----EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred             EEEEeCCCeEEEEECCCcchhh-----eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence            3477899999999998776544     355899999999999999999999999999999986421000           


Q ss_pred             ----------cc---------------------------cccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEEC
Q 001366          816 ----------VD---------------------------VYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDA  858 (1092)
Q Consensus       816 ----------~~---------------------------~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~  858 (1092)
                                +.                           ........+|...|.+++|+|+ +.++++++.||+|++||+
T Consensus       791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~  869 (1249)
T 3sfz_A          791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNI  869 (1249)
T ss_dssp             -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSS-TTEEEEECSSSCEEEEET
T ss_pred             CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEc
Confidence                      00                           0000112267889999999998 899999999999999999


Q ss_pred             CCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCC-----------------------------------
Q 001366          859 CTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE-----------------------------------  903 (1092)
Q Consensus       859 ~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~-----------------------------------  903 (1092)
                      .++..+..+.+|...|++++|+| ++..|++++.|++|++||+.+                                   
T Consensus       870 ~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  948 (1249)
T 3sfz_A          870 DSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL  948 (1249)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEE
T ss_pred             CCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEE
Confidence            99999999999999999999999 889999999999999998642                                   


Q ss_pred             --------------------------------------------CceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeE
Q 001366          904 --------------------------------------------KNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRT  938 (1092)
Q Consensus       904 --------------------------------------------~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I  938 (1092)
                                                                  ++.+..+. |...|.+++|+|++. ++++++.||.|
T Consensus       949 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~i 1027 (1249)
T 3sfz_A          949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK-TLISSSEDSVI 1027 (1249)
T ss_dssp             EEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS-CEEEECSSSBE
T ss_pred             EecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC-EEEEEcCCCEE
Confidence                                                        11112222 456789999999985 89999999999


Q ss_pred             EEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCC
Q 001366          939 YCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTAD 1018 (1092)
Q Consensus       939 ~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg 1018 (1092)
                      ++||+.++..  ..+.+|...|.++.|++++.+++++.|++|++||+.        .+.+...+.+|...|++++|+|++
T Consensus      1028 ~vwd~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~--------~~~~~~~~~~~~~~v~~~~~s~d~ 1097 (1249)
T 3sfz_A         1028 QVWNWQTGDY--VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI--------TGRIERDFTCHQGTVLSCAISSDA 1097 (1249)
T ss_dssp             EEEETTTTEE--ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETT--------TTCCCEEEECCSSCCCCEEECSSS
T ss_pred             EEEECCCCce--EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECC--------CCceeEEEcccCCcEEEEEECCCC
Confidence            9999998753  345689999999999998999999999999999998        456678899999999999999999


Q ss_pred             CEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1019 GYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1019 ~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .+|++|+.|++|++||..++.++..+              .+|...|++++|+|++.+|++|+.||.|+||++
T Consensus      1098 ~~l~s~s~d~~v~iwd~~~~~~~~~l--------------~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A         1098 TKFSSTSADKTAKIWSFDLLSPLHEL--------------KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp             SSCEEECCSSCCCEECSSSSSCSBCC--------------CCCSSCEEEEEECSSSSEEEEEETTSCCCEEES
T ss_pred             CEEEEEcCCCcEEEEECCCcceeeee--------------ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            99999999999999999877655432              467889999999999999999999999999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.7e-32  Score=304.30  Aligned_cols=254  Identities=19%  Similarity=0.210  Sum_probs=204.2

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecC-CCCEEEEEECCCc
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNY-IKNYLASADYDGV  852 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~LaSgs~Dgt  852 (1092)
                      .+.+|...|++++|+|+|++||+|+.|++|+|||+....     ........+|...|.+++|+++ .+++|+||+.|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~   82 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-----QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK   82 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence            356899999999999999999999999999999986411     1122345689999999999753 3789999999999


Q ss_pred             EEEEECCCC--ceEEEeeccCccEEEEEEecCC-CCEEEEEeCCCcEEEEecCCCcee---eeEe-cCCceEEEEEccCC
Q 001366          853 VKLWDACTG--QTVSHYIEHEKRAWSVDFSQVH-PTKLASGSDDCSVKLWNINEKNSL---ATIK-NIANVCCVQFSAHS  925 (1092)
Q Consensus       853 V~IWD~~tg--~~i~~l~~h~~~V~sv~fsp~~-~~~laSgs~Dg~I~iWDl~~~~~l---~~l~-~~~~V~sl~fsp~~  925 (1092)
                      |+|||+.++  +.+..+.+|...|++++|+|.. +.+|++|+.|++|++||++.+...   ..+. |...|.+++|+|+.
T Consensus        83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            999999887  4677788999999999999942 779999999999999999876432   2222 56789999999973


Q ss_pred             ----------------CeEEEEEECCCeEEEEEcCCCC--cceEEecCCCCCeEEEEEcCC-----CEEEEEECCCeEEE
Q 001366          926 ----------------SHLLAFGSADYRTYCYDLRNAR--APWCVLAGHEKAVSYVKFLDS-----GTLVTASTDNKLKL  982 (1092)
Q Consensus       926 ----------------~~~latgs~Dg~I~vwDlr~~~--~~~~~l~~H~~~V~~v~fs~~-----~~L~Sgs~Dg~I~v  982 (1092)
                                      ..+|++|+.|+.|++||++...  .+...+.+|...|.+++|++.     .+|++++.|++|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                            2489999999999999997543  245678899999999999854     68999999999999


Q ss_pred             EEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCC
Q 001366          983 WDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       983 WDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                      ||+.....    .......+..|...|++++|+|++.+||+|+.|++|+||+..
T Consensus       243 w~~~~~~~----~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          243 WTCDDASS----NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EECSSTTC----CCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEccCccc----cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            99974211    011223456788999999999999999999999999999865

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.5e-33  Score=322.53  Aligned_cols=250  Identities=16%  Similarity=0.157  Sum_probs=186.9

Q ss_pred             hHHHhhhc--cccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.+  +|.|.||++...    ..+..++.|+.....  .........++..++...+||+++.++.........+
T Consensus         6 ~y~~~~~lG~G~fg~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~   81 (337)
T 1o6l_A            6 DFDYLKLLGKGTFGKVILVREK----ATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             GEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             HeEEEEEEecCCCeEEEEEEEC----CCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEE
Confidence            34444444  478999998752    235556666553221  1112233455666778889999998877665443333


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+|||++||+|.+++...+ .+++.+++.++.||+.||+|||++||+||||||+|||++.+|.+
T Consensus        82 ----------------lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~v  144 (337)
T 1o6l_A           82 ----------------FVMEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHI  144 (337)
T ss_dssp             ----------------EEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCE
T ss_pred             ----------------EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCE
Confidence                            3899999999999997654 47777999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.....                                                                  
T Consensus       145 kL~DFG~a~~~~~~------------------------------------------------------------------  158 (337)
T 1o6l_A          145 KITDFGLCKEGISD------------------------------------------------------------------  158 (337)
T ss_dssp             EECCCTTCBCSCCT------------------------------------------------------------------
T ss_pred             EEeeccchhhcccC------------------------------------------------------------------
Confidence            99999998753210                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                           .......+||+.|+|||++.+..++.++|||||||+||||+++
T Consensus       159 -------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g  201 (337)
T 1o6l_A          159 -------------------------------------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG  201 (337)
T ss_dssp             -------------------------------------TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcC
Confidence                                                 0001256799999999999999999999999999999999985


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                         |............+......|  ...++.+.+||.+||++||.+||     ++.||++||||...
T Consensus       202 ~~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~~  267 (337)
T 1o6l_A          202 RLPFYNQDHERLFELILMEEIRFP--RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSI  267 (337)
T ss_dssp             SCSSCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             CCCCCCCCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCCcCCC
Confidence               544333322222222222212  23578999999999999999999     89999999999764

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.8e-33  Score=318.87  Aligned_cols=255  Identities=15%  Similarity=0.154  Sum_probs=179.4

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      ++|.+.+.++  +.|.||++...    ..+..++.|+..............++..++...+||||+.+++....+...+ 
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~-   79 (317)
T 2pmi_A            5 SQFKQLEKLGNGTYATVYKGLNK----TTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLT-   79 (317)
T ss_dssp             --------------CEEEEEECS----SSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEE-
T ss_pred             cceeEeeEECCCCCEEEEEEEEC----CCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEE-
Confidence            3566665554  78999999763    2345566665533332223345566778888999999998877654333222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcC-----CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-----HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-----~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                                     ++|||++| +|.+++....     ..++...++.++.||+.||+|||++||+||||||+|||++.
T Consensus        80 ---------------lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~  143 (317)
T 2pmi_A           80 ---------------LVFEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINK  143 (317)
T ss_dssp             ---------------EEEECCCC-BHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECT
T ss_pred             ---------------EEEEecCC-CHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcC
Confidence                           38999995 9999996542     34788899999999999999999999999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.+||+|||+++....+.                                                             
T Consensus       144 ~~~~kl~Dfg~~~~~~~~~-------------------------------------------------------------  162 (317)
T 2pmi_A          144 RGQLKLGDFGLARAFGIPV-------------------------------------------------------------  162 (317)
T ss_dssp             TCCEEECCCSSCEETTSCC-------------------------------------------------------------
T ss_pred             CCCEEECcCccceecCCCc-------------------------------------------------------------
Confidence            9999999999987643100                                                             


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~  523 (1092)
                                                                ......+||++|+|||++.+ ..++.++|||||||+||
T Consensus       163 ------------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  200 (317)
T 2pmi_A          163 ------------------------------------------NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILA  200 (317)
T ss_dssp             ------------------------------------------CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHH
T ss_pred             ------------------------------------------ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHH
Confidence                                                      00114578999999999987 46899999999999999


Q ss_pred             HHcCC---CCcHHHHHHHHHhcc--ccCC------------------------------CCCCCCCChhHHHHHHhcccc
Q 001366          524 ELFGR---FDSERALAAAMSDLR--DRIL------------------------------PPSFLSENPKEAGFCLWQLHP  568 (1092)
Q Consensus       524 ell~~---f~~~~~~~~~~~~~~--~~~~------------------------------p~~~~~~~~~~~~li~~lL~~  568 (1092)
                      ||+++   |.+............  ....                              +......++.+.+|+.+||++
T Consensus       201 el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  280 (317)
T 2pmi_A          201 EMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQL  280 (317)
T ss_dssp             HHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCS
T ss_pred             HHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCC
Confidence            99986   544333222211111  1000                              001123567889999999999


Q ss_pred             CCCCCCCHHHHhhhhhhhhhhc
Q 001366          569 EPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       569 dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      ||.+|||+.|+|+||||.+...
T Consensus       281 dP~~Rpt~~e~l~hp~f~~~~~  302 (317)
T 2pmi_A          281 NPDMRLSAKQALHHPWFAEYYH  302 (317)
T ss_dssp             SGGGSCCHHHHTTSGGGGGGCC
T ss_pred             CcccCCCHHHHhCChhhhcccc
Confidence            9999999999999999987644

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.7e-30  Score=308.35  Aligned_cols=276  Identities=17%  Similarity=0.338  Sum_probs=232.7

Q ss_pred             ecCCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          775 FNNSANV-ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       775 l~~h~~~-V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      +.+|... ++++.|  ++++|++|+.|++|++||+...       .......+|...|.+++|+++ + +|++|+.||+|
T Consensus       117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~-------~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i  185 (464)
T 3v7d_B          117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK-------KFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTV  185 (464)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECST-T-EEEEEETTSCE
T ss_pred             EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC-------cEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCE
Confidence            4577776 566666  5679999999999999998652       223344579999999999986 3 99999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecC-CCCEEEEEeCCCcEEEEecCCCceee-----------------------e
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQV-HPTKLASGSDDCSVKLWNINEKNSLA-----------------------T  909 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~-~~~~laSgs~Dg~I~iWDl~~~~~l~-----------------------~  909 (1092)
                      ++||+.+++.+..+.+|...|.+++|++. ++..+++|+.|++|++||++++....                       .
T Consensus       186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            99999999999999999999999999952 56889999999999999999876432                       2


Q ss_pred             Ee-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCC
Q 001366          910 IK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKR  987 (1092)
Q Consensus       910 l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~  987 (1092)
                      +. +...|.++  ++++ .++++|+.|+.|++||+++.+ .+..+.+|...|.+++|+ ++.+|++|+.||+|++||++ 
T Consensus       266 ~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-  340 (464)
T 3v7d_B          266 LRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE-  340 (464)
T ss_dssp             ECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-
T ss_pred             ccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-
Confidence            22 45567776  4556 489999999999999999865 467788999999999998 67799999999999999998 


Q ss_pred             CCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEE
Q 001366          988 TSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSS 1067 (1092)
Q Consensus       988 ~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~s 1067 (1092)
                             .+.++.++.+|...|.+++|+  +.+|++|+.||.|++||...+.......               +...+..
T Consensus       341 -------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~---------------~~~~~~~  396 (464)
T 3v7d_B          341 -------NGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH---------------HTNLSAI  396 (464)
T ss_dssp             -------TTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---------------CTTCCCE
T ss_pred             -------CCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec---------------CCCCccE
Confidence                   467888999999999999997  5799999999999999998876554432               3456788


Q ss_pred             EEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1068 VCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1068 va~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++|+|++.+|++|+ ||.|+||++
T Consensus       397 ~~~~~~~~~l~~~~-dg~i~iwd~  419 (464)
T 3v7d_B          397 TTFYVSDNILVSGS-ENQFNIYNL  419 (464)
T ss_dssp             EEEEECSSEEEEEE-TTEEEEEET
T ss_pred             EEEEeCCCEEEEec-CCeEEEEEC
Confidence            99999999999998 999999996

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=4e-34  Score=329.43  Aligned_cols=251  Identities=16%  Similarity=0.173  Sum_probs=185.4

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccC-CCCCCCccccceecCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  286 (1092)
                      ..|.+.+.++  +.|.||++...    ..+..++.|+......  ........++..++... +||||+.++........
T Consensus        23 ~~y~~~~~lG~G~fg~V~~~~~~----~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~   98 (353)
T 3txo_A           23 DNFEFIRVLGKGSFGKVMLARVK----ETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDR   98 (353)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred             hheEEEEEEeeCCCEEEEEEEEc----CCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCE
Confidence            3455555554  78999999763    2355566665532111  11222333444455544 79999988777654433


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                .+||||+|++|.+++...+ .+++.+++.|+.||+.||+|||++||+||||||+||||+.++
T Consensus        99 ~~----------------lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g  161 (353)
T 3txo_A           99 LF----------------FVMEFVNGGDLMFHIQKSR-RFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEG  161 (353)
T ss_dssp             EE----------------EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS
T ss_pred             EE----------------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCC
Confidence            33                3899999999999997764 477889999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++.....                                                                
T Consensus       162 ~ikL~DFG~a~~~~~~----------------------------------------------------------------  177 (353)
T 3txo_A          162 HCKLADFGMCKEGICN----------------------------------------------------------------  177 (353)
T ss_dssp             CEEECCCTTCBCSCC-----------------------------------------------------------------
T ss_pred             CEEEccccceeecccC----------------------------------------------------------------
Confidence            9999999998753210                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                             .......+||++|+|||++.+..++.++|||||||+||||+
T Consensus       178 ---------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  218 (353)
T 3txo_A          178 ---------------------------------------GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEML  218 (353)
T ss_dssp             -----------------------------------------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHH
Confidence                                                   00012568999999999999989999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH------HHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT------REILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa------~eiL~~~~~~~~  588 (1092)
                      ++   |............+......|.  ..++.+.+||.+||++||.+||++      .||++||||.+.
T Consensus       219 ~G~~Pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~f~~~  287 (353)
T 3txo_A          219 CGHAPFEAENEDDLFEAILNDEVVYPT--WLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEI  287 (353)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGGGTTC
T ss_pred             hCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCcccCC
Confidence            85   6555444444444443333332  357889999999999999999999      899999999874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.8e-30  Score=303.57  Aligned_cols=278  Identities=17%  Similarity=0.272  Sum_probs=233.9

Q ss_pred             ccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccccc
Q 001366          741 IQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYY  820 (1092)
Q Consensus       741 ~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~  820 (1092)
                      +|+++..|....|++|++|+....++...+.   +.+|...|++|+|+|+|++||+|+.|++|+|||+...       ..
T Consensus       112 ~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~---~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-------~~  181 (420)
T 4gga_A          112 DWSSGNVLAVALDNSVYLWSASSGDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------KR  181 (420)
T ss_dssp             EECTTSEEEEEETTEEEEEETTTCCEEEEEE---CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EE
T ss_pred             EECCCCEEEEEeCCEEEEEECCCCCEEEEEE---ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-------cE
Confidence            4677778888899999999998877666554   5588999999999999999999999999999998752       23


Q ss_pred             ceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCC-ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEE
Q 001366          821 PAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTG-QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW  899 (1092)
Q Consensus       821 ~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg-~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iW  899 (1092)
                      .....+|...|.+++|++   .+|++|+.|+++++||.... ..+..+.+|...+..+.|+| ++..+++++.|+.+++|
T Consensus       182 ~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~  257 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVW  257 (420)
T ss_dssp             EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred             EEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEE
Confidence            344567899999999975   59999999999999998865 46778899999999999999 89999999999999999


Q ss_pred             ecCCCce----eeeE-ecCCceEEEEEccCCCeEEEEE--ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEE
Q 001366          900 NINEKNS----LATI-KNIANVCCVQFSAHSSHLLAFG--SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTL  971 (1092)
Q Consensus       900 Dl~~~~~----l~~l-~~~~~V~sl~fsp~~~~~latg--s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L  971 (1092)
                      |+.+++.    +... .+...|.+++|+|.+..+++++  +.|++|++||++++.. ...+..| ..+.++.|+ +++.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-~~~~~~~-~~v~~~~~~~~~~~l  335 (420)
T 4gga_A          258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-LSAVDAH-SQVCSILWSPHYKEL  335 (420)
T ss_dssp             ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-EEEEECS-SCEEEEEEETTTTEE
T ss_pred             eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-ceeeccc-cceeeeeecCCCCeE
Confidence            9987753    2233 3678899999999988888765  4799999999998764 4455444 467888887 67777


Q ss_pred             EEEE--CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCcee
Q 001366          972 VTAS--TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPIT 1042 (1092)
Q Consensus       972 ~Sgs--~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~ 1042 (1092)
                      ++++  .|+.|+|||+.        ++.++.++.+|...|++++|+|+|.+||+||.|++|+|||+....+..
T Consensus       336 v~~sg~~d~~I~iwd~~--------~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          336 ISGHGFAQNQLVIWKYP--------TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             EEEECTTTCCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred             EEEEecCCCEEEEEECC--------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence            7765  79999999998        467889999999999999999999999999999999999987655443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.4e-31  Score=293.90  Aligned_cols=267  Identities=15%  Similarity=0.248  Sum_probs=221.6

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecC-CCCEEEEEECCCc
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNY-IKNYLASADYDGV  852 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~LaSgs~Dgt  852 (1092)
                      .+.+|...|++++|+|++++||+|+.|++|+|||+....   ..........+|...|.+++|+|. ++.+|++++.||+
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT---SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS---CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC---CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            356899999999999999999999999999999987521   111223344579999999999984 2889999999999


Q ss_pred             EEEEECCCC---------ceEEEeeccCccEEEEEEecCC--CCEEEEEeCCCcEEEEecCCCceeeeEe----------
Q 001366          853 VKLWDACTG---------QTVSHYIEHEKRAWSVDFSQVH--PTKLASGSDDCSVKLWNINEKNSLATIK----------  911 (1092)
Q Consensus       853 V~IWD~~tg---------~~i~~l~~h~~~V~sv~fsp~~--~~~laSgs~Dg~I~iWDl~~~~~l~~l~----------  911 (1092)
                      |++||+.++         +.+..+.+|...|++++|+| +  +.+|++++.|+.|++||+++++.+..+.          
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            999999887         56888889999999999999 6  8899999999999999999887665442          


Q ss_pred             ----cCCceEEEEEccC--CCeEEEEEECCCeEEEEEcCCCCc-ceEEecCCCCCeEEEEEcCC-----CEEEEEECCCe
Q 001366          912 ----NIANVCCVQFSAH--SSHLLAFGSADYRTYCYDLRNARA-PWCVLAGHEKAVSYVKFLDS-----GTLVTASTDNK  979 (1092)
Q Consensus       912 ----~~~~V~sl~fsp~--~~~~latgs~Dg~I~vwDlr~~~~-~~~~l~~H~~~V~~v~fs~~-----~~L~Sgs~Dg~  979 (1092)
                          +...+.+++|+|+  +..++++++.|+.+.+|+...... .+..+.+|...|.+++|+++     .+|++|+.||.
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence                4567999999997  235999999999998888776543 35677899999999999955     58999999999


Q ss_pred             EEEEEcCCCCCCC--------------------------------------CCCCceeEEEcCCCCCeEEEEEecCCCEE
Q 001366          980 LKLWDLKRTSHTG--------------------------------------PSTNACSLTFSGHTNEKNFVGLSTADGYI 1021 (1092)
Q Consensus       980 I~vWDl~~~~~~~--------------------------------------~~~~~~~~~l~~h~~~V~~v~~spdg~~l 1021 (1092)
                      |++||++......                                      .....++..+.+|...|++++|+|++.+|
T Consensus       242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  321 (351)
T 3f3f_A          242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL  321 (351)
T ss_dssp             EEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred             EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence            9999998532100                                      00125677888999999999999999999


Q ss_pred             EEEecCCcEEEEeCCCCCceeee
Q 001366         1022 ACGSESNEVYAYHRSLPMPITSY 1044 (1092)
Q Consensus      1022 asgs~Dg~I~Iwd~~~~~~i~~~ 1044 (1092)
                      ++|+.||.|+||++..++.+..+
T Consensus       322 ~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          322 SSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEEecCcCcchhhe
Confidence            99999999999999887766544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.9e-31  Score=309.55  Aligned_cols=279  Identities=16%  Similarity=0.332  Sum_probs=233.0

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEE
Q 001366          776 NNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKL  855 (1092)
Q Consensus       776 ~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~I  855 (1092)
                      .+|...|.+++|  ++++|++|+.|++|+|||+.+.       .......+|...|.+++|  + +++|++|+.||+|++
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~v  197 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL-------ECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRV  197 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC-------CEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC-------eEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEE
Confidence            367788998877  7899999999999999998652       223345579999999999  3 679999999999999


Q ss_pred             EECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCcee---eeEe-cCCceEEEEEccCCCeEEEE
Q 001366          856 WDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSL---ATIK-NIANVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       856 WD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l---~~l~-~~~~V~sl~fsp~~~~~lat  931 (1092)
                      ||+.+++.+..+.+|...|.+++|++   ..+++|+.|++|++||++++..+   ..+. +...|.+++|  ++ .++++
T Consensus       198 wd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s  271 (435)
T 1p22_A          198 WDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD-KYIVS  271 (435)
T ss_dssp             EESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-TEEEE
T ss_pred             EECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-CEEEE
Confidence            99999999999999999999999965   59999999999999999988765   3333 6778999999  44 48999


Q ss_pred             EECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE
Q 001366          932 GSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~ 1011 (1092)
                      |+.||.|++||+++.+ .+..+.+|...|.++.|. +.++++|+.||+|++||++        .+.++.++.+|...|++
T Consensus       272 ~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~--------~~~~~~~~~~h~~~v~~  341 (435)
T 1p22_A          272 ASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIE--------CGACLRVLEGHEELVRC  341 (435)
T ss_dssp             EETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETT--------TCCEEEEECCCSSCEEE
T ss_pred             EeCCCeEEEEECCcCc-EEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECC--------CCCEEEEEeCCcCcEEE
Confidence            9999999999999875 467788999999999995 7899999999999999998        45778899999999999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1012 v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++|  ++.+|++|+.||.|++||+..+......     ..........+|...|.+++|  ++.+|++|+.||.|+||++
T Consensus       342 ~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~  412 (435)
T 1p22_A          342 IRF--DNKRIVSGAYDGKIKVWDLVAALDPRAP-----AGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF  412 (435)
T ss_dssp             EEC--CSSEEEEEETTSCEEEEEHHHHTSTTSC-----TTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred             EEe--cCCEEEEEeCCCcEEEEECCCCCCcccc-----ccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence            988  7889999999999999997654311000     000011233578889999999  7889999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.3e-30  Score=289.82  Aligned_cols=285  Identities=20%  Similarity=0.210  Sum_probs=238.4

Q ss_pred             ccchhhhhhccccccCCCCc-EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001366          728 DRENLFLAQQDQEIQNPTDR-LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIF  806 (1092)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~-l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iw  806 (1092)
                      +|.+.+..+.    ++|++. +....|+.+++|++........+......+|...|.+++|+|++++|++++.|+.|++|
T Consensus        49 ~h~~~v~~~~----~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           49 NHGEVVCAVT----ISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             CCSSCCCEEE----ECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             cCCCceEEEE----EecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            3455444443    345443 33334999999998765433333322334799999999999999999999999999999


Q ss_pred             EcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCE
Q 001366          807 EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK  886 (1092)
Q Consensus       807 d~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~  886 (1092)
                      |+....     .........|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+..|...|.+++|+| ++..
T Consensus       125 d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~  197 (337)
T 1gxr_A          125 DLAAPT-----PRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTK  197 (337)
T ss_dssp             ECCCC-------EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSE
T ss_pred             ECCCCC-----cceeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCE
Confidence            987521     1122344568889999999997 89999999999999999999999999999999999999999 8899


Q ss_pred             EEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc
Q 001366          887 LASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL  966 (1092)
Q Consensus       887 laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs  966 (1092)
                      |++++.|+.|++||+++++.+..+.+...+.+++|+|++. ++++++.|+.|++||+++.+  ...+..|...|.+++|+
T Consensus       198 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~  274 (337)
T 1gxr_A          198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFA  274 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSC--EEEECCCSSCEEEEEEC
T ss_pred             EEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCC--eEEEcCCccceeEEEEC
Confidence            9999999999999999999999999999999999999995 89999999999999999865  35678899999999999


Q ss_pred             -CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeC
Q 001366          967 -DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus       967 -~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                       ++.+|++++.||.|++||+.+        +..+. ...|...+++++|+|++.+|++++.||.|++|++
T Consensus       275 ~~~~~l~~~~~dg~i~~~~~~~--------~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          275 YCGKWFVSTGKDNLLNAWRTPY--------GASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT--------CCEEE-EEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEecCCCcEEEEECCC--------CeEEE-EecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence             677899999999999999984        33333 3458889999999999999999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.3e-30  Score=328.97  Aligned_cols=338  Identities=18%  Similarity=0.246  Sum_probs=269.8

Q ss_pred             hhhccchhhhhhccccccCCCCc--EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 001366          725 LLRDRENLFLAQQDQEIQNPTDR--LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKK  802 (1092)
Q Consensus       725 ~l~~~~~~~~~~~~~~~~~~~~~--l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~  802 (1092)
                      .+.+|.+.+..+.    ++|++.  +.+..|+.+++|++........     +..|...|++++|+|++++||+|+.|+.
T Consensus         8 ~~~~h~~~v~~i~----~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~   78 (814)
T 3mkq_A            8 TFSNRSDRVKGID----FHPTEPWVLTTLYSGRVEIWNYETQVEVRS-----IQVTETPVRAGKFIARKNWIIVGSDDFR   78 (814)
T ss_dssp             EEEEECSCEEEEE----ECSSSSEEEEEETTSEEEEEETTTTEEEEE-----EECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred             eeecCCCceEEEE----ECCCCCEEEEEeCCCEEEEEECCCCceEEE-----EecCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence            4556666665553    456654  3566799999999887655443     4589999999999999999999999999


Q ss_pred             EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCC-ceEEEeeccCccEEEEEEec
Q 001366          803 IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTG-QTVSHYIEHEKRAWSVDFSQ  881 (1092)
Q Consensus       803 I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg-~~i~~l~~h~~~V~sv~fsp  881 (1092)
                      |+|||+.+.       .......+|...|.+++|+|+ +.+|++++.||+|++||+.++ .....+.+|...|.+++|+|
T Consensus        79 i~vw~~~~~-------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p  150 (814)
T 3mkq_A           79 IRVFNYNTG-------EKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP  150 (814)
T ss_dssp             EEEEETTTC-------CEEEEEECCSSCEEEEEECSS-SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred             EEEEECCCC-------cEEEEEecCCCCEEEEEEeCC-CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence            999998752       222344568999999999998 889999999999999999887 67788889999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCceeeeEec--CCceEEEEEcc--CCCeEEEEEECCCeEEEEEcCCCCcceEEecCCC
Q 001366          882 VHPTKLASGSDDCSVKLWNINEKNSLATIKN--IANVCCVQFSA--HSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHE  957 (1092)
Q Consensus       882 ~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~--~~~V~sl~fsp--~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~  957 (1092)
                      .++..|++++.||+|++||+.++.....+..  ...+.+++|+|  ++. ++++|+.||.|++||+++.+ .+..+.+|.
T Consensus       151 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~  228 (814)
T 3mkq_A          151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKS-CVATLEGHM  228 (814)
T ss_dssp             TEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTE-EEEEEECCS
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCc-EEEEEcCCC
Confidence            6678999999999999999998888777763  37899999999  774 89999999999999998865 467788999


Q ss_pred             CCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC--EEEEEecCCcEEEEe
Q 001366          958 KAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG--YIACGSESNEVYAYH 1034 (1092)
Q Consensus       958 ~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~--~lasgs~Dg~I~Iwd 1034 (1092)
                      ..|.+++|+ ++.+|++++.||.|++||+.        .+..+..+..|...+++++|+|++.  ++++|+ ++.+.+|+
T Consensus       229 ~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~  299 (814)
T 3mkq_A          229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSS--------TYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS  299 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEETT--------TCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECC--------CCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence            999999999 56689999999999999998        4567888999999999999999987  455555 66688998


Q ss_pred             CCCCCceeeeec-c------ccCC----------------CCC------ccccCCCCCCEEEEEEeCCCCEEEEEecCCe
Q 001366         1035 RSLPMPITSYKF-G------SIDP----------------ISG------KETDDDNGLFVSSVCWRRRSDMVVAANSSGC 1085 (1092)
Q Consensus      1035 ~~~~~~i~~~~~-~------~~~~----------------i~~------~~~~~~h~~~V~sva~spd~~~Lasgs~DG~ 1085 (1092)
                      .....+...+.. +      ..+.                ..+      ......+...+.+++|+|++++|++++ ||.
T Consensus       300 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~  378 (814)
T 3mkq_A          300 LGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGE  378 (814)
T ss_dssp             CSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTE
T ss_pred             cCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCE
Confidence            766544333321 0      0000                000      011133455688899999999888887 888


Q ss_pred             EEEEEc
Q 001366         1086 IKVLQM 1091 (1092)
Q Consensus      1086 V~vW~l 1091 (1092)
                      +.||++
T Consensus       379 ~~i~~~  384 (814)
T 3mkq_A          379 YVIYTA  384 (814)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            888874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8.9e-31  Score=328.28  Aligned_cols=292  Identities=16%  Similarity=0.194  Sum_probs=230.5

Q ss_pred             hhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKI  803 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I  803 (1092)
                      ..+++|.+.+.++.+.. ...+-.++++.|+++++|++.............+.+|...|++++|+|++++|++|+.|++|
T Consensus       376 ~~l~~H~~~V~~v~~~~-~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPI-DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEEECCSSCEEEEECCT-TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hhcccCCceeEEEEecC-CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            34678888877665411 11222458899999999998643221112223567999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEe---eccCccEEEEEEe
Q 001366          804 KIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHY---IEHEKRAWSVDFS  880 (1092)
Q Consensus       804 ~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l---~~h~~~V~sv~fs  880 (1092)
                      +|||+...       .......+|...|.+++|+|+ +.+|+||+.|++|+|||+.........   .+|...|.+++|+
T Consensus       455 ~vwd~~~~-------~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  526 (694)
T 3dm0_A          455 RLWDLAAG-------VSTRRFVGHTKDVLSVAFSLD-NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS  526 (694)
T ss_dssp             EEEETTTT-------EEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred             EEEECCCC-------cceeEEeCCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence            99998752       223345689999999999998 889999999999999998654433322   3688899999999


Q ss_pred             cCCC--CEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCC
Q 001366          881 QVHP--TKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHE  957 (1092)
Q Consensus       881 p~~~--~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~  957 (1092)
                      | ++  ..|++|+.|++|++||++++++..++. |...|++++|+|++. +|++|+.|+.|++||+++++. +..+. +.
T Consensus       527 ~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~-~~~~~-~~  602 (694)
T 3dm0_A          527 P-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKK-LYSLE-AN  602 (694)
T ss_dssp             S-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEE-EECCB-CS
T ss_pred             C-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCce-EEEec-CC
Confidence            9 54  579999999999999999999888887 678899999999995 999999999999999998764 33443 45


Q ss_pred             CCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC-------------------CCCCeEEEEEecCC
Q 001366          958 KAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG-------------------HTNEKNFVGLSTAD 1018 (1092)
Q Consensus       958 ~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~-------------------h~~~V~~v~~spdg 1018 (1092)
                      ..|.+++|++++.+++++.|+.|+|||+.+.        .++..+..                   +...+++++|+|+|
T Consensus       603 ~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg  674 (694)
T 3dm0_A          603 SVIHALCFSPNRYWLCAATEHGIKIWDLESK--------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG  674 (694)
T ss_dssp             SCEEEEEECSSSSEEEEEETTEEEEEETTTT--------EEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred             CcEEEEEEcCCCcEEEEEcCCCEEEEECCCC--------CChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence            6799999997777777777888999999843        33333322                   22247889999999


Q ss_pred             CEEEEEecCCcEEEEeCC
Q 001366         1019 GYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus      1019 ~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                      .+|++|+.||.|+||++.
T Consensus       675 ~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          675 STLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             SEEEEEETTSEEEEEEC-
T ss_pred             CEEEEEcCCCeEEEEecc
Confidence            999999999999999974

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=3.8e-33  Score=322.12  Aligned_cols=250  Identities=16%  Similarity=0.143  Sum_probs=187.9

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch-----hhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-----DAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      |.+.+.++  +.|+||++...    ..+..++.|+........     ......++..++...+||||+.+++.......
T Consensus        14 y~~~~~LG~G~fg~V~~~~~~----~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~   89 (361)
T 2yab_A           14 YDIGEELGSGQFAIVKKCREK----STGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD   89 (361)
T ss_dssp             EEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             eEEeeEEeeCcCEEEEEEEEC----CCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence            55555554  78999999762    235556666543222111     12334566777888899999998776554333


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                .+||||+|++|.++|...+ .+++.+++.+++||+.||+|||++||+||||||+|||++..+
T Consensus        90 ~~----------------lv~e~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~  152 (361)
T 2yab_A           90 VV----------------LILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKN  152 (361)
T ss_dssp             EE----------------EEEECCCSCBHHHHHTTCS-CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTT
T ss_pred             EE----------------EEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCC
Confidence            33                3899999999999997654 577889999999999999999999999999999999998877


Q ss_pred             ----cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccC
Q 001366          367 ----QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN  442 (1092)
Q Consensus       367 ----~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1092)
                          .+||+|||+++.....                                                            
T Consensus       153 ~~~~~vkl~DFG~a~~~~~~------------------------------------------------------------  172 (361)
T 2yab_A          153 IPIPHIKLIDFGLAHEIEDG------------------------------------------------------------  172 (361)
T ss_dssp             SSSCCEEECCCSSCEECCTT------------------------------------------------------------
T ss_pred             CCccCEEEEecCCceEcCCC------------------------------------------------------------
Confidence                7999999998764310                                                            


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHH
Q 001366          443 ESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLF  522 (1092)
Q Consensus       443 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll  522 (1092)
                                                                  ......+||+.|+|||++.+..++.++|||||||++
T Consensus       173 --------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil  208 (361)
T 2yab_A          173 --------------------------------------------VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT  208 (361)
T ss_dssp             --------------------------------------------CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred             --------------------------------------------CccccCCCCccEECchHHcCCCCCccccHHHHHHHH
Confidence                                                        001245799999999999999999999999999999


Q ss_pred             HHHcCC---CCcHHHHHHHHHhccccC-CC-CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          523 FELFGR---FDSERALAAAMSDLRDRI-LP-PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       523 ~ell~~---f~~~~~~~~~~~~~~~~~-~p-~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |+|+++   |.+............... ++ +.+...++.+.+||.+||.+||.+|||+.|+|+||||...
T Consensus       209 ~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~  279 (361)
T 2yab_A          209 YILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPV  279 (361)
T ss_dssp             HHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTSCS
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcCcCcCCC
Confidence            999986   544433333322222221 12 2345668889999999999999999999999999999753

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=5.7e-33  Score=314.01  Aligned_cols=250  Identities=16%  Similarity=0.168  Sum_probs=183.3

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.++  +.|.||++...+     +..++.|+........ ......++..++...+||||+.+++....+...+ 
T Consensus        22 ~y~~~~~lG~G~~g~V~~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~-   95 (311)
T 3niz_A           22 KYQKLEKVGEGTYGVVYKAKDSQ-----GRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLT-   95 (311)
T ss_dssp             EEEEEEEEEECSSCEEEEEEETT-----SCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEE-
T ss_pred             hhHhhhhccCCCCeEEEEEEECC-----CCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEE-
Confidence            355555444  789999998643     4556666553322221 2244556777888889999998877654333222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     ++|||++| +|.+++......++..+++.+++||+.||+|||++||+||||||+|||++.++.+|
T Consensus        96 ---------------lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~k  159 (311)
T 3niz_A           96 ---------------LVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALK  159 (311)
T ss_dssp             ---------------EEEECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEE
T ss_pred             ---------------EEEcCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEE
Confidence                           38999986 89999987777788889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++....+                                                                   
T Consensus       160 l~Dfg~a~~~~~~-------------------------------------------------------------------  172 (311)
T 3niz_A          160 LADFGLARAFGIP-------------------------------------------------------------------  172 (311)
T ss_dssp             ECCCTTCEETTSC-------------------------------------------------------------------
T ss_pred             EccCcCceecCCC-------------------------------------------------------------------
Confidence            9999998764310                                                                   


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                          ....+..+||++|+|||++.+ ..++.++|||||||+||||+++
T Consensus       173 ------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g  216 (311)
T 3niz_A          173 ------------------------------------VRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITG  216 (311)
T ss_dssp             ------------------------------------CC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------cccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhC
Confidence                                                001124578999999999987 5689999999999999999985


Q ss_pred             ---CCcHH---HHHHHHHhccccCCCC--------------------------CCCCCChhHHHHHHhccccCCCCCCCH
Q 001366          529 ---FDSER---ALAAAMSDLRDRILPP--------------------------SFLSENPKEAGFCLWQLHPEPLSRPTT  576 (1092)
Q Consensus       529 ---f~~~~---~~~~~~~~~~~~~~p~--------------------------~~~~~~~~~~~li~~lL~~dP~~Rpsa  576 (1092)
                         |.+..   .....+..+ ....+.                          .....++++.+|+.+||++||.+|||+
T Consensus       217 ~~pf~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~  295 (311)
T 3niz_A          217 KPLFPGVTDDDQLPKIFSIL-GTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISA  295 (311)
T ss_dssp             SCSCCCSSTTTHHHHHHHHH-CCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCH
T ss_pred             CCCCCCCChHHHHHHHHHHH-CCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCH
Confidence               43322   122222211 111111                          122356788999999999999999999


Q ss_pred             HHHhhhhhhhhh
Q 001366          577 REILQSEVTNEF  588 (1092)
Q Consensus       577 ~eiL~~~~~~~~  588 (1092)
                      .|+|+||||.+.
T Consensus       296 ~ell~hp~f~~~  307 (311)
T 3niz_A          296 RDAMNHPYFKDL  307 (311)
T ss_dssp             HHHHTSGGGTTS
T ss_pred             HHHhcCcccccC
Confidence            999999999875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=5.6e-30  Score=298.94  Aligned_cols=280  Identities=14%  Similarity=0.240  Sum_probs=233.9

Q ss_pred             ccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccccc
Q 001366          741 IQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYY  820 (1092)
Q Consensus       741 ~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~  820 (1092)
                      .+++...+.+..|+.+++|+....+....+..    .|...|++++|+|++++|++|+.|+.|+|||+...       ..
T Consensus       100 ~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~  168 (401)
T 4aez_A          100 DWSNLNVVAVALERNVYVWNADSGSVSALAET----DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-------TK  168 (401)
T ss_dssp             EECTTSEEEEEETTEEEEEETTTCCEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------CE
T ss_pred             eecCCCEEEEECCCeEEEeeCCCCcEeEeeec----CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC-------eE
Confidence            35666778889999999999987766554432    48999999999999999999999999999998752       12


Q ss_pred             ceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECC-CCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEE
Q 001366          821 PAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDAC-TGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW  899 (1092)
Q Consensus       821 ~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~-tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iW  899 (1092)
                      .....+|...|.+++|+   +.+|++++.||+|++||+. .+..+..+.+|...|.+++|+| ++.+|++|+.|+.|++|
T Consensus       169 ~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iw  244 (401)
T 4aez_A          169 LRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIW  244 (401)
T ss_dssp             EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred             EEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEc
Confidence            23345789999999995   4699999999999999998 4667888999999999999999 89999999999999999


Q ss_pred             ecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEE--CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEE
Q 001366          900 NINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGS--ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTAS  975 (1092)
Q Consensus       900 Dl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs--~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs  975 (1092)
                      |+++++++..+. +...|.+++|+|++..++++|+  .|+.|++||+++++. +..+. |...|.+++|+ ++.+|++++
T Consensus       245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-VNTVD-AGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-EEEEE-CSSCEEEEEECSSSSEEEEEE
T ss_pred             cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-EEEEe-CCCcEEEEEECCCCCeEEEEe
Confidence            999999888886 6788999999999888888876  799999999998764 44443 66789999999 667888744


Q ss_pred             --CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceee
Q 001366          976 --TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITS 1043 (1092)
Q Consensus       976 --~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~ 1043 (1092)
                        .||.|++||+.+..      ......+.+|...|.+++|+|++.+|++|+.||.|++|++..++.+..
T Consensus       323 g~~dg~i~v~~~~~~~------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          323 GFPDNNLSIWSYSSSG------LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             CTTTCEEEEEEEETTE------EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred             ecCCCcEEEEecCCcc------ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence              89999999998421      233445778999999999999999999999999999999988876654

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.98  E-value=3.3e-33  Score=315.89  Aligned_cols=244  Identities=23%  Similarity=0.231  Sum_probs=179.7

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhh-hhccCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAM-MVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.+  +|.|.||+|...    ..+..++.|+...... ........++.. +.....|||++.++.....+...+ 
T Consensus        59 y~~~~~LG~G~~g~Vy~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~-  133 (311)
T 3p1a_A           59 FQRLSRLGHGSYGEVFKVRSK----EDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILY-  133 (311)
T ss_dssp             EEEEEEEEEETTEEEEEEEET----TTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE-
T ss_pred             eeeeheeccCCCeEEEEEEEC----CCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEE-
Confidence            4444344  488999999763    2255666665433222 222223333333 333448999998877655433333 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     ++|||+ +++|.+++...+..+++.+++.|+.||+.||+|||++||+||||||+|||++.++.+|
T Consensus       134 ---------------lv~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~k  197 (311)
T 3p1a_A          134 ---------------LQTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCK  197 (311)
T ss_dssp             ---------------EEEECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEE
T ss_pred             ---------------EEEecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEE
Confidence                           378988 7799999988777799999999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++......                                                                  
T Consensus       198 l~DFG~a~~~~~~~------------------------------------------------------------------  211 (311)
T 3p1a_A          198 LGDFGLLVELGTAG------------------------------------------------------------------  211 (311)
T ss_dssp             ECCCTTCEECC---------------------------------------------------------------------
T ss_pred             EccceeeeecccCC------------------------------------------------------------------
Confidence            99999986643100                                                                  


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                            ......||+.|+|||++.+ .++.++|||||||+||||+++ 
T Consensus       212 --------------------------------------~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~  252 (311)
T 3p1a_A          212 --------------------------------------AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNM  252 (311)
T ss_dssp             -----------------------------------------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTC
T ss_pred             --------------------------------------CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCC
Confidence                                                  0113468999999999886 799999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCC-CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPS-FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                        |......    ..+.....++. ....++.+.+|+.+||++||.+|||+.|+|+||||++
T Consensus       253 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~~~~  310 (311)
T 3p1a_A          253 ELPHGGEGW----QQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQ  310 (311)
T ss_dssp             CCCSSHHHH----HHHTTTCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGSC
T ss_pred             CCCCCccHH----HHHhccCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhCccccC
Confidence              3333222    22233333332 3345788999999999999999999999999999975

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.98  E-value=5.9e-33  Score=319.46  Aligned_cols=251  Identities=17%  Similarity=0.145  Sum_probs=185.5

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccc----cCchhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTT----TMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      .|.+.+.+  +|.|+||++...    ..+..++.|+....    ..........++..++...+||||+.+++....+..
T Consensus        25 ~y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~  100 (351)
T 3c0i_A           25 VYELCEVIGKGPFSVVRRCINR----ETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGM  100 (351)
T ss_dssp             HEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             ceEEeeEEeeCCCEEEEEEEEC----CCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence            34554444  478999999652    22456666654211    111123344566677888899999998876554443


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNAR---GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~---~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                      .+                ++||||+|++|.+++...   +..+++.+++.+++||+.||+|||++||+||||||+|||++
T Consensus       101 ~~----------------lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~  164 (351)
T 3c0i_A          101 LY----------------MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLA  164 (351)
T ss_dssp             EE----------------EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC
T ss_pred             EE----------------EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEe
Confidence            33                389999999999988543   34578889999999999999999999999999999999998


Q ss_pred             cCCc---EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccc
Q 001366          364 QSNQ---VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIET  440 (1092)
Q Consensus       364 ~~~~---vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1092)
                      ..+.   +|++|||+++......                                                         
T Consensus       165 ~~~~~~~vkl~Dfg~a~~~~~~~---------------------------------------------------------  187 (351)
T 3c0i_A          165 SKENSAPVKLGGFGVAIQLGESG---------------------------------------------------------  187 (351)
T ss_dssp             SSSTTCCEEECCCTTCEECCTTS---------------------------------------------------------
T ss_pred             cCCCCCcEEEecCcceeEecCCC---------------------------------------------------------
Confidence            7655   9999999987644100                                                         


Q ss_pred             cCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhH
Q 001366          441 ANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGV  520 (1092)
Q Consensus       441 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGv  520 (1092)
                                                                    ......+||++|+|||++.+..++.++|||||||
T Consensus       188 ----------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  221 (351)
T 3c0i_A          188 ----------------------------------------------LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGV  221 (351)
T ss_dssp             ----------------------------------------------CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHH
T ss_pred             ----------------------------------------------eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHH
Confidence                                                          0011457999999999999999999999999999


Q ss_pred             HHHHHcCC---CCcHHHHHHHHHhcccc---CCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          521 LFFELFGR---FDSERALAAAMSDLRDR---ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       521 ll~ell~~---f~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +||||+++   |.....  ..+..+...   ..++.+...++.+.+||.+||++||.+|||+.++|+||||.+.
T Consensus       222 il~~ll~g~~pf~~~~~--~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~  293 (351)
T 3c0i_A          222 ILFILLSGCLPFYGTKE--RLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKER  293 (351)
T ss_dssp             HHHHHHHSSCSSCSSHH--HHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTH
T ss_pred             HHHHHHHCCCCCCCcHH--HHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcChhhcCC
Confidence            99999986   444322  122222211   1222345668889999999999999999999999999999864

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.98  E-value=2.2e-33  Score=319.26  Aligned_cols=248  Identities=14%  Similarity=0.155  Sum_probs=179.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||++...    ..+..++.|+..............++..++...+|||++.+++....+...+           
T Consensus        12 ~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-----------   76 (324)
T 3mtl_A           12 EGTYATVYKGKSK----LTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLT-----------   76 (324)
T ss_dssp             ECSSEEEEEEEET----TTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEE-----------
T ss_pred             CCCCEEEEEEEEC----CCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEE-----------
Confidence            3478999999763    2245566665533222222223446777888899999998877654333222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           ++|||++| +|.+++...+..++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        77 -----lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~  150 (324)
T 3mtl_A           77 -----LVFEYLDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAK  150 (324)
T ss_dssp             -----EEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC
T ss_pred             -----EEeccccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccc
Confidence                 38999985 999999888778899899999999999999999999999999999999999999999999998753


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ..+                                                                             
T Consensus       151 ~~~-----------------------------------------------------------------------------  153 (324)
T 3mtl_A          151 SIP-----------------------------------------------------------------------------  153 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            310                                                                             


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                .......+||++|+|||++.+ ..++.++|||||||+||||+++   |.+....
T Consensus       154 --------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~  207 (324)
T 3mtl_A          154 --------------------------TKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVE  207 (324)
T ss_dssp             -----------------------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             --------------------------ccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                      001114578999999999987 5689999999999999999985   5544332


Q ss_pred             HHHHH--hccccCCCC--------------------------CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          536 AAAMS--DLRDRILPP--------------------------SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       536 ~~~~~--~~~~~~~p~--------------------------~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      .....  .....+.+.                          .....++.+.+|+.+||++||.+|||++|+|+||||..
T Consensus       208 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~  287 (324)
T 3mtl_A          208 EQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLS  287 (324)
T ss_dssp             HHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGG
T ss_pred             HHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhh
Confidence            22221  111111111                          11235678899999999999999999999999999987


Q ss_pred             hhcc
Q 001366          588 FQEV  591 (1092)
Q Consensus       588 ~~~~  591 (1092)
                      ..+.
T Consensus       288 ~~~~  291 (324)
T 3mtl_A          288 LGER  291 (324)
T ss_dssp             GCST
T ss_pred             cccc
Confidence            6543

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.98  E-value=7.4e-33  Score=309.12  Aligned_cols=242  Identities=15%  Similarity=0.171  Sum_probs=177.5

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ++.|.||++...+     ++.++.|+....... .......++..++...+|||++.+++........+           
T Consensus        13 G~~g~V~~~~~~~-----~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-----------   76 (288)
T 1ob3_A           13 GTYGVVYKAQNNY-----GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLV-----------   76 (288)
T ss_dssp             ETTEEEEEEEETT-----SCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEE-----------
T ss_pred             CCCEEEEEEEcCC-----CCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEE-----------
Confidence            4789999997632     445555544222211 12234456777888889999999877655433322           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|||++| +|.+++......++..+++.++.||+.||+|||++||+||||||+||+++.++.+||+|||+++..
T Consensus        77 -----lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  150 (288)
T 1ob3_A           77 -----LVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAF  150 (288)
T ss_dssp             -----EEEECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHH
T ss_pred             -----EEEEecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECcccccc
Confidence                 37999987 999999877667888899999999999999999999999999999999999999999999998764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ..+.                                                                            
T Consensus       151 ~~~~----------------------------------------------------------------------------  154 (288)
T 1ob3_A          151 GIPV----------------------------------------------------------------------------  154 (288)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             Cccc----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                 ...+...||++|+|||++.+ ..++.++|||||||+||||+++   |......
T Consensus       155 ---------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~  207 (288)
T 1ob3_A          155 ---------------------------RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEA  207 (288)
T ss_dssp             ----------------------------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             ---------------------------cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                       00114568999999999987 4589999999999999999985   5443333


Q ss_pred             HHHHHhccc--cC-------------CCC------------CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          536 AAAMSDLRD--RI-------------LPP------------SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       536 ~~~~~~~~~--~~-------------~p~------------~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      .......+.  ..             ..+            .....++.+.+|+.+||++||.+|||+.|+|+||||.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~  286 (288)
T 1ob3_A          208 DQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (288)
T ss_dssp             HHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             HHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhh
Confidence            322222110  00             000            11235678889999999999999999999999999975

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.98  E-value=1.1e-29  Score=283.90  Aligned_cols=275  Identities=15%  Similarity=0.228  Sum_probs=229.8

Q ss_pred             ccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccccc
Q 001366          741 IQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYY  820 (1092)
Q Consensus       741 ~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~  820 (1092)
                      .|+++..|.+..|+++++|+..+.++...+.   +.+|...|++++|+|++++||+|+.|++|+||++.+.       ..
T Consensus        32 ~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~---~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~-------~~  101 (318)
T 4ggc_A           32 DWSSGNVLAVALDNSVYLWSASSGDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-------KR  101 (318)
T ss_dssp             EECTTSEEEEEETTEEEEEETTTCCEEEEEE---CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT-------EE
T ss_pred             EECCCCEEEEEeCCEEEEEECCCCCEEEEEE---ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc-------ee
Confidence            4778888888899999999998877766554   5589999999999999999999999999999998752       22


Q ss_pred             ceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCC-ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEE
Q 001366          821 PAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTG-QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW  899 (1092)
Q Consensus       821 ~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg-~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iW  899 (1092)
                      .....+|...+.++.+.+   ..+++++.++.+++|+..++ ..+..+.+|...+..+.|.+ ++..|++++.|++|++|
T Consensus       102 ~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iw  177 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVW  177 (318)
T ss_dssp             EEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred             EEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEE
Confidence            334567888888877764   59999999999999998876 46778889999999999999 88999999999999999


Q ss_pred             ecCCCceeee-----EecCCceEEEEEccCCCeEE--EEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEE
Q 001366          900 NINEKNSLAT-----IKNIANVCCVQFSAHSSHLL--AFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTL  971 (1092)
Q Consensus       900 Dl~~~~~l~~-----l~~~~~V~sl~fsp~~~~~l--atgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L  971 (1092)
                      |+++++....     ..+...|.++.++|++..++  ++++.++.|++||.+....  .....|...+..+.|+ ++..+
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~  255 (318)
T 4ggc_A          178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHSQVCSILWSPHYKEL  255 (318)
T ss_dssp             ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE--EEEEECSSCEEEEEEETTTTEE
T ss_pred             ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc--cccccceeeeeeeeecccccce
Confidence            9998764322     12567899999999887665  4556789999999987654  3334567789999998 66666


Q ss_pred             EEEE--CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCC
Q 001366          972 VTAS--TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPM 1039 (1092)
Q Consensus       972 ~Sgs--~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~ 1039 (1092)
                      ++++  .|+.|+|||++        ++.++.++.+|...|++++|+|+|.+||+||.|++|+|||+....
T Consensus       256 ~~~sg~~d~~i~iwd~~--------~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          256 ISGHGFAQNQLVIWKYP--------TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEECTTTCCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEEEcCCCEEEEEECC--------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            6554  79999999998        467889999999999999999999999999999999999986543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.98  E-value=8.3e-31  Score=303.19  Aligned_cols=296  Identities=15%  Similarity=0.146  Sum_probs=240.6

Q ss_pred             hhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeE-EeeeecCCCCCEEEEEEcCC----C---CEEE
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGML-RTGEFNNSANVICSISFDRD----E---DHFA  795 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l-~~~~l~~h~~~V~sl~fspd----g---~~la  795 (1092)
                      .++++|...+.++.+    +|.-.++++.|+.+++|++...+..... ....+.+|...|++++|+|+    +   ++|+
T Consensus        10 ~~~~~h~~~i~~~~~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A           10 NAGKAHDADIFSVSA----CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EESSCSSSCEEEEEE----CSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhcCeEEEEe----cCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            345677777766543    5555668889999999998765410000 01235589999999999999    9   9999


Q ss_pred             EEeCCCcEEEEEcCCCCCCCcccccceeeecC-----CCCeEEEEEe----cCCCCE-EEEEECCCcEEEEECCC-----
Q 001366          796 AAGVSKKIKIFEFNALFNDSVDVYYPAVEMSN-----RSKLSCVCWN----NYIKNY-LASADYDGVVKLWDACT-----  860 (1092)
Q Consensus       796 tgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h-----~~~V~~v~~s----p~~~~~-LaSgs~DgtV~IWD~~t-----  860 (1092)
                      +|+.|+.|++|++......  ..........|     ...|.+++|+    |+ +.+ |++++.||.|++||+.+     
T Consensus        86 s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDET--KKVIFEKLDLLDSDMKKHSFWALKWGASNDRL-LSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             EEETTSCEEEEEEEECTTT--CCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEcCCCCEEEEEccCCccc--ccccceeecccccccCCCcEEEEEEeeccCCC-CceEEEEEeCCCcEEEEeCCcccccc
Confidence            9999999999998752210  00002233455     4899999999    87 788 99999999999999988     


Q ss_pred             -CceEE-----Eee-------ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec-------CCceEEEE
Q 001366          861 -GQTVS-----HYI-------EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN-------IANVCCVQ  920 (1092)
Q Consensus       861 -g~~i~-----~l~-------~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~-------~~~V~sl~  920 (1092)
                       ++.+.     .+.       .|...|++++|+| ++ .|++|+.|+.|++||+++++.+..+..       ...|.+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~  240 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  240 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence             66555     664       4889999999999 77 999999999999999999999988885       78899999


Q ss_pred             EccCCCeEEEEEECC---CeEEEEEcCCCCcceEEecC-------------CCCCeEEEEEc-CCCEEEEEECCCeEEEE
Q 001366          921 FSAHSSHLLAFGSAD---YRTYCYDLRNARAPWCVLAG-------------HEKAVSYVKFL-DSGTLVTASTDNKLKLW  983 (1092)
Q Consensus       921 fsp~~~~~latgs~D---g~I~vwDlr~~~~~~~~l~~-------------H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vW  983 (1092)
                      |+|++. +|++++.|   +.|++||+++.+ .+..+.+             |...|.+++|+ ++.+|++++.||.|++|
T Consensus       241 ~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  318 (397)
T 1sq9_A          241 FSPQGS-LLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  318 (397)
T ss_dssp             ECSSTT-EEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             ECCCCC-EEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            999985 89999999   999999999875 4667777             99999999999 67799999999999999


Q ss_pred             EcCCCCCCCCCCCceeEEEc------CC---------------CCCeEEEEEecCC----------CEEEEEecCCcEEE
Q 001366          984 DLKRTSHTGPSTNACSLTFS------GH---------------TNEKNFVGLSTAD----------GYIACGSESNEVYA 1032 (1092)
Q Consensus       984 Dl~~~~~~~~~~~~~~~~l~------~h---------------~~~V~~v~~spdg----------~~lasgs~Dg~I~I 1032 (1092)
                      |++        ...++..+.      +|               ...|++++|+|++          .+|++|+.|+.|++
T Consensus       319 d~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i  390 (397)
T 1sq9_A          319 DVK--------TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  390 (397)
T ss_dssp             ETT--------TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             EcC--------CCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence            998        456778888      77               9999999999998          79999999999999


Q ss_pred             EeCCCC
Q 001366         1033 YHRSLP 1038 (1092)
Q Consensus      1033 wd~~~~ 1038 (1092)
                      |++.++
T Consensus       391 w~~~~g  396 (397)
T 1sq9_A          391 FREAGG  396 (397)
T ss_dssp             EEEEC-
T ss_pred             EEcCCC
Confidence            998654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.98  E-value=1e-29  Score=300.60  Aligned_cols=274  Identities=18%  Similarity=0.365  Sum_probs=236.2

Q ss_pred             ecCCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          775 FNNSANVI-CSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       775 l~~h~~~V-~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      +.+|...| +++  +++|++|++|+.|++|+|||+.+.       .......+|...|.+++|++   ++|++|+.||+|
T Consensus       114 l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i  181 (445)
T 2ovr_B          114 LKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTG-------KCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTL  181 (445)
T ss_dssp             EECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTC-------CEEEECCCCSSCEEEEEEET---TEEEEEETTSCE
T ss_pred             ecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCC-------cEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeE
Confidence            44777764 554  456899999999999999998752       12233457999999999984   599999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      ++||+.+++.+..+.+|...|.++.|++   ..+++|+.|++|++||+++++++..+. +...|.+++|  ++ .++++|
T Consensus       182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~  255 (445)
T 2ovr_B          182 KVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG-RRVVSG  255 (445)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS-SCEEEE
T ss_pred             EEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC-CEEEEE
Confidence            9999999999999999999999999964   689999999999999999999998887 6788999999  44 479999


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEE
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v 1012 (1092)
                      +.||.|++||+++.+ .+..+.+|...|.++.| ++.++++++.|+.|++||++        .+.++..+.+|...+.++
T Consensus       256 ~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~~v~~~  325 (445)
T 2ovr_B          256 AYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVE--------TGNCIHTLTGHQSLTSGM  325 (445)
T ss_dssp             ETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETT--------TCCEEEEECCCCSCEEEE
T ss_pred             cCCCEEEEEECCCCc-EeEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECC--------CCCEEEEEcCCcccEEEE
Confidence            999999999999865 46778899999999999 78899999999999999998        456788899999998887


Q ss_pred             EEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1013 GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1013 ~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .++  +.+|++|+.||.|++||+.+++.+..+..           ...|...|.+++|+  +.+|++|+.||.|+||++
T Consensus       326 ~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          326 ELK--DNILVSGNADSTVKIWDIKTGQCLQTLQG-----------PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             EEE--TTEEEEEETTSCEEEEETTTCCEEEEECS-----------TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             EEe--CCEEEEEeCCCeEEEEECCCCcEEEEEcc-----------CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence            774  66999999999999999998888776641           13477889999996  579999999999999996

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.98  E-value=2.1e-33  Score=327.72  Aligned_cols=254  Identities=18%  Similarity=0.162  Sum_probs=183.3

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhcc-CCCCCCCccccceecC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVAS-NASPKPVGVGTAVVSN  284 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  284 (1092)
                      +...|.+.+.++  |.|.||++...+    .+..++.|+.......  .......++..++.. .+||||+.++.....+
T Consensus        50 ~~~~y~~~~~LG~G~fG~V~~~~~~~----~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~  125 (396)
T 4dc2_A           50 GLQDFDLLRVIGRGSYAKVLLVRLKK----TDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE  125 (396)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETT----TTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ChhHcEEEEEEeeCCCeEEEEEEECC----CCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEEC
Confidence            455666666665  789999997632    2455566554322111  111222333334433 4899999987765544


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                      ...+                .+||||+||+|.+++...+ .+++.+++.|+.||+.||+|||++||+||||||+||||+.
T Consensus       126 ~~~~----------------lV~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~  188 (396)
T 4dc2_A          126 SRLF----------------FVIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDS  188 (396)
T ss_dssp             SEEE----------------EEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECT
T ss_pred             CEEE----------------EEEEcCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECC
Confidence            3333                3899999999999997764 5778899999999999999999999999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.+||+|||+++.....                                                              
T Consensus       189 ~g~ikL~DFGla~~~~~~--------------------------------------------------------------  206 (396)
T 4dc2_A          189 EGHIKLTDYGMCKEGLRP--------------------------------------------------------------  206 (396)
T ss_dssp             TSCEEECCCTTCBCCCCT--------------------------------------------------------------
T ss_pred             CCCEEEeecceeeecccC--------------------------------------------------------------
Confidence            999999999998753210                                                              


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~e  524 (1092)
                                                               .......+||++|+|||++.+..++.++|||||||+|||
T Consensus       207 -----------------------------------------~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllye  245 (396)
T 4dc2_A          207 -----------------------------------------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFE  245 (396)
T ss_dssp             -----------------------------------------TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             -----------------------------------------CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHH
Confidence                                                     000125689999999999999999999999999999999


Q ss_pred             HcCC---CCcH--------HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH------HHHhhhhhhhh
Q 001366          525 LFGR---FDSE--------RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT------REILQSEVTNE  587 (1092)
Q Consensus       525 ll~~---f~~~--------~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa------~eiL~~~~~~~  587 (1092)
                      |+++   |...        .........+.... +......++.+.+||.+||++||.+||++      .||++||||..
T Consensus       246 ll~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~-~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~  324 (396)
T 4dc2_A          246 MMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ-IRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN  324 (396)
T ss_dssp             HHHSSCSSTTTTC------CCHHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTT
T ss_pred             HHhCCCCCcccccccccchhhHHHHHHHHhccc-cCCCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccC
Confidence            9986   4211        00111222222111 11122357899999999999999999995      79999999976


Q ss_pred             h
Q 001366          588 F  588 (1092)
Q Consensus       588 ~  588 (1092)
                      .
T Consensus       325 i  325 (396)
T 4dc2_A          325 V  325 (396)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.98  E-value=3.2e-32  Score=314.71  Aligned_cols=251  Identities=19%  Similarity=0.139  Sum_probs=188.7

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.++  +.|+||++...    ..+..++.|+....... .......++..++...+||||+.+++....+...+ 
T Consensus        30 ~y~~~~~lG~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~-  104 (362)
T 2bdw_A           30 NYDVKEELGKGAFSVVRRCVHK----TTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHY-  104 (362)
T ss_dssp             HEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE-
T ss_pred             CeEEeeEEecCCCeEEEEEEEC----CCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE-
Confidence            355555554  78999999752    23556666665333222 23334456777788889999999877655433333 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC---
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN---  366 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~---  366 (1092)
                                     .+||||.|++|.+++...+ .+++.+++.+++||+.||+|||++||+||||||+|||++..+   
T Consensus       105 ---------------lv~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~  168 (362)
T 2bdw_A          105 ---------------LVFDLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGA  168 (362)
T ss_dssp             ---------------EEECCCCSCBHHHHHTTCS-CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTC
T ss_pred             ---------------EEEecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCC
Confidence                           3899999999999997654 577889999999999999999999999999999999998654   


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++.....                                                                
T Consensus       169 ~~kl~DfG~a~~~~~~----------------------------------------------------------------  184 (362)
T 2bdw_A          169 AVKLADFGLAIEVNDS----------------------------------------------------------------  184 (362)
T ss_dssp             CEEECCCTTCBCCTTC----------------------------------------------------------------
T ss_pred             CEEEeecCcceEecCC----------------------------------------------------------------
Confidence            5999999998664310                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              ......+||++|+|||++.+..++.++|||||||+||||+
T Consensus       185 ----------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll  224 (362)
T 2bdw_A          185 ----------------------------------------EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILL  224 (362)
T ss_dssp             ----------------------------------------CSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------cccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence                                                    0011457999999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccc--cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ++   |...............  ....+.+...++.+.+||.+||++||.+||++.++|+||||...
T Consensus       225 ~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~  291 (362)
T 2bdw_A          225 VGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNR  291 (362)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSHHHHTH
T ss_pred             HCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcccCCC
Confidence            86   4443333222222222  22233445668899999999999999999999999999999864

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.98  E-value=3.3e-33  Score=320.64  Aligned_cols=250  Identities=18%  Similarity=0.163  Sum_probs=184.4

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhcc-CCCCCCCccccceecCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVAS-NASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  287 (1092)
                      .|.+.+.++  |.|.||++....    .++.++.|+......  .........+..++.. ..||+++.++.........
T Consensus        18 ~y~~~~~lG~G~fg~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           18 DFILHKMLGKGSFGKVFLAEFKK----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETT----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             HeEEEEEEeeCCCeEEEEEEECC----CCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            455555444  789999998632    345566665532111  1122223334444443 4899999887765544333


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      +                .+||||+||+|.++|...+ .++..+++.++.||+.||+|||++||+||||||+|||++.++.
T Consensus        94 ~----------------lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~  156 (345)
T 1xjd_A           94 F----------------FVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGH  156 (345)
T ss_dssp             E----------------EEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSC
T ss_pred             E----------------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCC
Confidence            3                3899999999999998754 4778899999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||+++.....                                                                 
T Consensus       157 vkL~DFG~a~~~~~~-----------------------------------------------------------------  171 (345)
T 1xjd_A          157 IKIADFGMCKENMLG-----------------------------------------------------------------  171 (345)
T ss_dssp             EEECCCTTCBCCCCT-----------------------------------------------------------------
T ss_pred             EEEeEChhhhhcccC-----------------------------------------------------------------
Confidence            999999998753200                                                                 


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                            .......+||++|+|||++.+..++.++|||||||+||||++
T Consensus       172 --------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  213 (345)
T 1xjd_A          172 --------------------------------------DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLI  213 (345)
T ss_dssp             --------------------------------------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------CCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhc
Confidence                                                  000125689999999999999999999999999999999998


Q ss_pred             C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHH-HHhhhhhhhhh
Q 001366          528 R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTR-EILQSEVTNEF  588 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~-eiL~~~~~~~~  588 (1092)
                      +   |.+.................|  ...++.+.+||.+||+.||.+||++. +|++||||...
T Consensus       214 g~~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~hp~f~~~  276 (345)
T 1xjd_A          214 GQSPFHGQDEEELFHSIRMDNPFYP--RWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREI  276 (345)
T ss_dssp             SSCSSCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTC
T ss_pred             CCCCCCCCCHHHHHHHHHhCCCCCC--cccCHHHHHHHHHHhcCCHhHcCCChHHHHcCccccCC
Confidence            5   544433333322222222222  23578899999999999999999998 99999999865

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=1.3e-32  Score=318.74  Aligned_cols=257  Identities=14%  Similarity=0.192  Sum_probs=184.2

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  ++.|+||++...    ..+..++.|+.... ..........++..++...+|||++.+++.........  
T Consensus        27 y~~~~~lG~G~~g~V~~a~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~--  100 (367)
T 1cm8_A           27 YRDLQPVGSGAYGAVCSAVDG----RTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLD--  100 (367)
T ss_dssp             EEEEEEC------CEEEEEET----TTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTT--
T ss_pred             EEEeEEeeecCCeEEEEEEEC----CCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccc--
Confidence            4444333  368999999752    23556666654322 22223445567788888999999998877654332211  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                         .     +....++|||+ |++|.++++..  .++..++..++.||+.||+|||++||+||||||+|||++.++.+||
T Consensus       101 ---~-----~~~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl  169 (367)
T 1cm8_A          101 ---D-----FTDFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKI  169 (367)
T ss_dssp             ---T-----CCCCEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEE
T ss_pred             ---c-----CceEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEE
Confidence               0     01112478998 89999999864  5788899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++....                                                                     
T Consensus       170 ~Dfg~a~~~~~---------------------------------------------------------------------  180 (367)
T 1cm8_A          170 LDFGLARQADS---------------------------------------------------------------------  180 (367)
T ss_dssp             CCCTTCEECCS---------------------------------------------------------------------
T ss_pred             Eeeeccccccc---------------------------------------------------------------------
Confidence            99999876330                                                                     


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ..+..+||++|+|||++.+ ..++.++|||||||+||||+++ 
T Consensus       181 -------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~  223 (367)
T 1cm8_A          181 -------------------------------------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK  223 (367)
T ss_dssp             -------------------------------------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCC
Confidence                                                 0114578999999999988 7799999999999999999985 


Q ss_pred             --CCcHHHHHHHHHhccc-----------------------------cCCCCCCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          529 --FDSERALAAAMSDLRD-----------------------------RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~-----------------------------~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                        |.+.....+....+..                             ..+...+...++.+.+|+.+||++||.+|||+.
T Consensus       224 ~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~  303 (367)
T 1cm8_A          224 TLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAG  303 (367)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHH
Confidence              5554333332222111                             011122345678899999999999999999999


Q ss_pred             HHhhhhhhhhhhccch
Q 001366          578 EILQSEVTNEFQEVCA  593 (1092)
Q Consensus       578 eiL~~~~~~~~~~~~~  593 (1092)
                      |+|+||||........
T Consensus       304 e~l~hp~f~~~~~~~~  319 (367)
T 1cm8_A          304 EALAHPYFESLHDTED  319 (367)
T ss_dssp             HHHHSGGGTTTC----
T ss_pred             HHhcChHHHhhcCCcc
Confidence            9999999998766554

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.98  E-value=1.2e-33  Score=321.50  Aligned_cols=254  Identities=14%  Similarity=0.070  Sum_probs=186.3

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.++  |.|.||++...    ..++.++.|++.............++..++...+||||+.++.....+...+  
T Consensus         8 ~y~i~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~--   81 (323)
T 3tki_A            8 DWDLVQTLGEGAYGEVQLAVNR----VTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQY--   81 (323)
T ss_dssp             CEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEE--
T ss_pred             hceeeeEEecCCCEEEEEEEEC----CCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEE--
Confidence            455555554  78999999652    2255666666533322222233445666778889999998877654333322  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    ++||||+|++|.+++...+ .++..+++.|+.||+.||+|||++||+||||||+|||++.++.+||
T Consensus        82 --------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl  146 (323)
T 3tki_A           82 --------------LFLEYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKI  146 (323)
T ss_dssp             --------------EEEECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEE
T ss_pred             --------------EEEEcCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEE
Confidence                          3899999999999997654 4778899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.+.....                                                                  
T Consensus       147 ~Dfg~a~~~~~~~~------------------------------------------------------------------  160 (323)
T 3tki_A          147 SDFGLATVFRYNNR------------------------------------------------------------------  160 (323)
T ss_dssp             CCCTTCEECEETTE------------------------------------------------------------------
T ss_pred             EEeeccceeccCCc------------------------------------------------------------------
Confidence            99999876441000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvll~ell~~-  528 (1092)
                                                         .......+||+.|+|||++.+..+ +.++|||||||+||||+++ 
T Consensus       161 -----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~  205 (323)
T 3tki_A          161 -----------------------------------ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE  205 (323)
T ss_dssp             -----------------------------------ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------------------------ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCC
Confidence                                               011125679999999999988765 7899999999999999986 


Q ss_pred             --CCcHHHHHHHHHh-ccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 --FDSERALAAAMSD-LRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 --f~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                        |.........+.. .......+.+...++.+.+|+.+||++||.+|||+.|+|+||||+..
T Consensus       206 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~  268 (323)
T 3tki_A          206 LPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKP  268 (323)
T ss_dssp             CSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred             CCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHccCChhhCcCHHHHhhChhhccc
Confidence              4332221111221 22223333445668889999999999999999999999999999864

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.98  E-value=8.3e-33  Score=322.52  Aligned_cols=276  Identities=17%  Similarity=0.218  Sum_probs=184.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCcccccccccccccccc-ccCchhhHhhhhhhhhhccCC-CCCCCccccceecCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVT-TTMPSDAALKAAGAMMVASNA-SPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.+  ++.|+||++...    ..+..++.|+... ...........++..++.... ||||+.+++......... 
T Consensus        11 y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~-   85 (388)
T 3oz6_A           11 YELVKKLGKGAYGIVWKSIDR----RTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD-   85 (388)
T ss_dssp             EEEEEC-------CEEEEEET----TTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC-
T ss_pred             eEEEEEeeeCCCeEEEEEEEC----CCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE-
Confidence            4444444  478999999642    2255566654422 223334555667777787776 999998877654322111 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                            .       ..+||||+| +|.++++..  .++...+..++.||+.||+|||++||+||||||+|||++.++.+|
T Consensus        86 ------~-------~lv~e~~~~-~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~k  149 (388)
T 3oz6_A           86 ------V-------YLVFDYMET-DLHAVIRAN--ILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVK  149 (388)
T ss_dssp             ------E-------EEEEECCSE-EHHHHHHHT--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEE
T ss_pred             ------E-------EEEecccCc-CHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEE
Confidence                  0       137999984 999999764  678889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++.+.........    .                                                        
T Consensus       150 l~DFG~a~~~~~~~~~~~~----~--------------------------------------------------------  169 (388)
T 3oz6_A          150 VADFGLSRSFVNIRRVTNN----I--------------------------------------------------------  169 (388)
T ss_dssp             ECCCTTCEESSSCCCCCCC----G--------------------------------------------------------
T ss_pred             ecCCccccccccccccccc----c--------------------------------------------------------
Confidence            9999999875421100000    0                                                        


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~  528 (1092)
                        +...+..                    ..........++..+||++|+|||++.+ ..++.++|||||||+||||+++
T Consensus       170 --~~~~~~~--------------------~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g  227 (388)
T 3oz6_A          170 --PLSINEN--------------------TENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCG  227 (388)
T ss_dssp             --GGCCC-----------------------------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             --ccccccc--------------------ccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhC
Confidence              0000000                    0000011223446799999999999987 6789999999999999999985


Q ss_pred             ---CCcHHHHHHHHHhccccCCCC---------------------------------------------CCCCCChhHHH
Q 001366          529 ---FDSERALAAAMSDLRDRILPP---------------------------------------------SFLSENPKEAG  560 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~---------------------------------------------~~~~~~~~~~~  560 (1092)
                         |.+.....+....+.....|+                                             .....++.+.+
T Consensus       228 ~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  307 (388)
T 3oz6_A          228 KPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALD  307 (388)
T ss_dssp             SCSCCCSSHHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHH
Confidence               655544433332221111111                                             01145788999


Q ss_pred             HHHhccccCCCCCCCHHHHhhhhhhhhhhccc
Q 001366          561 FCLWQLHPEPLSRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       561 li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                      |+.+||..||.+|||+.|+|+||||.......
T Consensus       308 ll~~~L~~dP~~R~t~~e~l~Hp~~~~~~~~~  339 (388)
T 3oz6_A          308 LLDKLLQFNPNKRISANDALKHPFVSIFHNPN  339 (388)
T ss_dssp             HHHHHCCSSGGGSCCHHHHTTSTTTTTTCCGG
T ss_pred             HHHHhhccCcccCCCHHHHhCCHHHHHhcCCc
Confidence            99999999999999999999999998765444

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.98  E-value=7.6e-33  Score=321.24  Aligned_cols=246  Identities=15%  Similarity=0.126  Sum_probs=185.1

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..++.|.||++....    .+..++.|+...... .......++..++...+||||+.+++........+          
T Consensus        98 G~G~~g~Vy~a~~~~----~g~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~----------  162 (373)
T 2x4f_A           98 GGGRFGQVHKCEETA----TGLKLAAKIIKTRGM-KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIV----------  162 (373)
T ss_dssp             C-----CEEEEEETT----TCCEEEEEEEECCSH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE----------
T ss_pred             ecCcCEEEEEEEEcC----CCcEEEEEEEccccc-ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEE----------
Confidence            445789999997522    245566666533221 23344556777888889999998877655433322          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE--ccCCcEEEeccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL--LQSNQVKYIGPIIQ  376 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill--~~~~~vkl~Dfg~~  376 (1092)
                            ++|||++|++|.+++......++..+++.|+.||+.||+|||++||+||||||+|||+  +..+.+||+|||++
T Consensus       163 ------lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a  236 (373)
T 2x4f_A          163 ------LVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLA  236 (373)
T ss_dssp             ------EEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSC
T ss_pred             ------EEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCc
Confidence                  3899999999999997766668888999999999999999999999999999999999  45678999999998


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.+...                                                                          
T Consensus       237 ~~~~~~--------------------------------------------------------------------------  242 (373)
T 2x4f_A          237 RRYKPR--------------------------------------------------------------------------  242 (373)
T ss_dssp             EECCTT--------------------------------------------------------------------------
T ss_pred             eecCCc--------------------------------------------------------------------------
Confidence            764310                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    ......+||++|+|||++.+..++.++|||||||+||||+++   |....
T Consensus       243 ------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~  292 (373)
T 2x4f_A          243 ------------------------------EKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN  292 (373)
T ss_dssp             ------------------------------CBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             ------------------------------cccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC
Confidence                                          001134689999999999999999999999999999999985   55444


Q ss_pred             HHHHHHHhcccc--CCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          534 ALAAAMSDLRDR--ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       534 ~~~~~~~~~~~~--~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ........+...  ..++.+...++.+.+||.+||++||.+|||+.|+|+||||.+.+
T Consensus       293 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~~  350 (373)
T 2x4f_A          293 DAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDHK  350 (373)
T ss_dssp             HHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCHH
T ss_pred             HHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCCc
Confidence            433333333322  22334556789999999999999999999999999999998753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.3e-30  Score=296.13  Aligned_cols=254  Identities=19%  Similarity=0.291  Sum_probs=216.2

Q ss_pred             eeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECC--CCceEEEeeccCccEEEEEEecC-CCCEEEEEeCCCcEEEE
Q 001366          823 VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDAC--TGQTVSHYIEHEKRAWSVDFSQV-HPTKLASGSDDCSVKLW  899 (1092)
Q Consensus       823 ~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~--tg~~i~~l~~h~~~V~sv~fsp~-~~~~laSgs~Dg~I~iW  899 (1092)
                      ...+|...|++++|+|+ +.+|++|+.||+|+|||+.  +++.+..+.+|...|++++|++. ++.+|++|+.|+.|++|
T Consensus         6 ~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            45679999999999998 8999999999999999998  55678889999999999999872 28999999999999999


Q ss_pred             ecCCCc--eeeeEe-cCCceEEEEEccC--CCeEEEEEECCCeEEEEEcCCCCc-ceEEecCCCCCeEEEEEcC------
Q 001366          900 NINEKN--SLATIK-NIANVCCVQFSAH--SSHLLAFGSADYRTYCYDLRNARA-PWCVLAGHEKAVSYVKFLD------  967 (1092)
Q Consensus       900 Dl~~~~--~l~~l~-~~~~V~sl~fsp~--~~~~latgs~Dg~I~vwDlr~~~~-~~~~l~~H~~~V~~v~fs~------  967 (1092)
                      |+.+++  .+..+. +...|.+++|+|+  + .+|++++.|+.|++||+++... ....+.+|...|.+++|++      
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            999986  555555 6788999999999  6 4999999999999999998643 3456778999999999986      


Q ss_pred             --------CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecC---CCEEEEEecCCcEEEEeCC
Q 001366          968 --------SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTA---DGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       968 --------~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd---g~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                              +.+|++++.|+.|++||++....    ...+...+.+|...|++++|+|+   +.+|++|+.|+.|++|++.
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQ----TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETTTT----EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCCCc----ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                    67899999999999999985321    23456788899999999999999   8999999999999999988


Q ss_pred             CCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1037 LPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1037 ~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .+........         .....|...|++++|+|++.+|++++.||.|+||++
T Consensus       240 ~~~~~~~~~~---------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          240 NEQGPWKKTL---------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             STTSCCEEEE---------SSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             CCCccceeee---------eccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            7653222111         112457788999999999999999999999999986

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.98  E-value=1.2e-32  Score=320.94  Aligned_cols=251  Identities=19%  Similarity=0.171  Sum_probs=190.8

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.++  +.|.||++...    ..+..++.|+.... ...+.....++..++...+|||++.+++........+  
T Consensus        52 ~y~i~~~LG~G~~g~Vy~~~~~----~~~~~~a~K~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~--  124 (387)
T 1kob_A           52 YYDILEELGSGAFGVVHRCVEK----ATGRVFVAKFINTP-YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMV--  124 (387)
T ss_dssp             TEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEE--
T ss_pred             ceEEEEEEecCCCEEEEEEEEC----CCCCEEEEEEeccc-chhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEE--
Confidence            455555554  78999999763    22455566555322 1223334556777888889999999877655433333  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc--CCcE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ--SNQV  368 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~--~~~v  368 (1092)
                                    ++|||+.|++|.+++...+..+++.+++.++.||+.||+|||++||+||||||+|||++.  .+.+
T Consensus       125 --------------lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~v  190 (387)
T 1kob_A          125 --------------LILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSV  190 (387)
T ss_dssp             --------------EEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCE
T ss_pred             --------------EEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCce
Confidence                          389999999999999877667899999999999999999999999999999999999974  4779


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.....                                                                  
T Consensus       191 kL~DFG~a~~~~~~------------------------------------------------------------------  204 (387)
T 1kob_A          191 KIIDFGLATKLNPD------------------------------------------------------------------  204 (387)
T ss_dssp             EECCCTTCEECCTT------------------------------------------------------------------
T ss_pred             EEEecccceecCCC------------------------------------------------------------------
Confidence            99999998764310                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                            .......||+.|+|||++.+..++.++|||||||+||||+++
T Consensus       205 --------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg  246 (387)
T 1kob_A          205 --------------------------------------EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG  246 (387)
T ss_dssp             --------------------------------------SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------cceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhC
Confidence                                                  001134689999999999999999999999999999999986


Q ss_pred             ---CCcHHHHHHHHHhccc--cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                         |.+.............  ...++.+...++.+.+||.+||++||.+|||+.|+|+||||...
T Consensus       247 ~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~  311 (387)
T 1kob_A          247 LSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGD  311 (387)
T ss_dssp             CCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSC
T ss_pred             CCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCccccCC
Confidence               5444333332222222  22234455678999999999999999999999999999999864

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.98  E-value=6e-33  Score=311.30  Aligned_cols=252  Identities=14%  Similarity=0.122  Sum_probs=180.7

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch-------------------------hhHhhhhhhh
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-------------------------DAALKAAGAM  264 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~  264 (1092)
                      .+|.+.+.++  |.|.||++....    .+..++.|+........                         ......++..
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~a~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~   88 (298)
T 2zv2_A           13 NQYTLKDEIGKGSYGVVKLAYNEN----DNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIA   88 (298)
T ss_dssp             TTEEEEEEEEC--CCEEEEEEETT----TTEEEEEEEEECC-------------------------------CHHHHHHH
T ss_pred             cceEEEeEEeecCCEEEEEEEECC----CCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHH
Confidence            3455555554  789999996421    24555665553222110                         1123455677


Q ss_pred             hhccCCCCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 001366          265 MVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDY  344 (1092)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~  344 (1092)
                      ++...+|||++.+++.......       ...       ..+|||++|++|.+++..  ..++..+++.++.||+.||+|
T Consensus        89 ~l~~l~h~~iv~~~~~~~~~~~-------~~~-------~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~  152 (298)
T 2zv2_A           89 ILKKLDHPNVVKLVEVLDDPNE-------DHL-------YMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEY  152 (298)
T ss_dssp             HHHTCCCTTBCCEEEEEECSSS-------SEE-------EEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCCeEEEEEEcCCC-------CEE-------EEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHH
Confidence            7888899999987766442110       001       138999999999987643  357888999999999999999


Q ss_pred             hhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccc
Q 001366          345 HHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFS  424 (1092)
Q Consensus       345 lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (1092)
                      ||++||+||||||+|||++.++.+||+|||+++......                                         
T Consensus       153 lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----------------------------------------  191 (298)
T 2zv2_A          153 LHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSD-----------------------------------------  191 (298)
T ss_dssp             HHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECSSSS-----------------------------------------
T ss_pred             HHHCCeeccCCCHHHEEECCCCCEEEecCCCcccccccc-----------------------------------------
Confidence            999999999999999999999999999999987643100                                         


Q ss_pred             cccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccc
Q 001366          425 RWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEEL  504 (1092)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l  504 (1092)
                                                                                    .......||+.|+|||++
T Consensus       192 --------------------------------------------------------------~~~~~~~gt~~y~aPE~~  209 (298)
T 2zv2_A          192 --------------------------------------------------------------ALLSNTVGTPAFMAPESL  209 (298)
T ss_dssp             --------------------------------------------------------------CEECCCCSCGGGCCGGGC
T ss_pred             --------------------------------------------------------------ccccCCcCCccccChhhh
Confidence                                                                          001145789999999999


Q ss_pred             cCCC---CCccccchhhhHHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHH
Q 001366          505 SGGV---CTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTRE  578 (1092)
Q Consensus       505 ~~~~---~t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e  578 (1092)
                      .+..   ++.++|||||||+||||+++   |...................+.....++.+.+|+.+||++||.+|||+.|
T Consensus       210 ~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e  289 (298)
T 2zv2_A          210 SETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPE  289 (298)
T ss_dssp             CTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHH
T ss_pred             ccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHHHHHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHH
Confidence            8755   47899999999999999985   44433322222222222223444566889999999999999999999999


Q ss_pred             Hhhhhhhh
Q 001366          579 ILQSEVTN  586 (1092)
Q Consensus       579 iL~~~~~~  586 (1092)
                      +|+||||.
T Consensus       290 ~l~hp~~~  297 (298)
T 2zv2_A          290 IKLHPWVT  297 (298)
T ss_dssp             HTTCHHHH
T ss_pred             HhcCcccc
Confidence            99999995

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.98  E-value=6.4e-33  Score=314.79  Aligned_cols=248  Identities=15%  Similarity=0.125  Sum_probs=186.3

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      ..|.+.+.++  +.|.||++...    ..+..++.|+......  ........++..++...+||||+.++.........
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~   81 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSR----HNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQI   81 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEE
Confidence            3455555444  68999998763    2245566665422111  11122334556667788999999987765543333


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      +                .+|||++|++|.++|...+ .++...++.++.||+.||+|||++||+||||||+|||++.+|.
T Consensus        82 ~----------------lv~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~  144 (318)
T 1fot_A           82 F----------------MIMDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGH  144 (318)
T ss_dssp             E----------------EEECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSC
T ss_pred             E----------------EEEeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCC
Confidence            3                3899999999999998754 4777799999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||+++...+.                                                                 
T Consensus       145 ~kL~Dfg~a~~~~~~-----------------------------------------------------------------  159 (318)
T 1fot_A          145 IKITDFGFAKYVPDV-----------------------------------------------------------------  159 (318)
T ss_dssp             EEECCCSSCEECSSC-----------------------------------------------------------------
T ss_pred             EEEeecCcceecCCc-----------------------------------------------------------------
Confidence            999999998763310                                                                 


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                               ....+||+.|+|||++.+..++.++|||||||+||||++
T Consensus       160 -----------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  198 (318)
T 1fot_A          160 -----------------------------------------TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLA  198 (318)
T ss_dssp             -----------------------------------------BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHh
Confidence                                                     014578999999999999999999999999999999998


Q ss_pred             C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          528 R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      +   |............+......|  ...++.+.+||.+||..||.+||     ++.+|++||||...
T Consensus       199 g~~pf~~~~~~~~~~~i~~~~~~~p--~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~~  265 (318)
T 1fot_A          199 GYTPFYDSNTMKTYEKILNAELRFP--PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEV  265 (318)
T ss_dssp             SSCTTCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSC
T ss_pred             CCCCCCCCCHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCccccCC
Confidence            6   544443333333333322212  23478899999999999999999     89999999999864

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.98  E-value=2.5e-32  Score=307.75  Aligned_cols=255  Identities=16%  Similarity=0.145  Sum_probs=177.6

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCc-------hhhHhhhhhhhhhccCCCCCCCccccceecC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-------SDAALKAAGAMMVASNASPKPVGVGTAVVSN  284 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (1092)
                      |.+.+.+  +|.|.||++...    ..+..++.|+.......       ..........+.+....|||++.+++.....
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A           11 YEPVAEIGVGAYGTVYKARDP----HSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             CEEEEEECCSSSCCEEEEECT----TTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             eEEEEEEecCCCeEEEEEEEC----CCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            5554444  478999999852    23556666665322111       1112222222333444699999887765433


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH-KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~-~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                      ....    ...       ...+|||+.| +|.+++..... .++..+++.|++||+.||+|||++||+||||||+|||++
T Consensus        87 ~~~~----~~~-------~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~  154 (308)
T 3g33_A           87 RTDR----EIK-------VTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVT  154 (308)
T ss_dssp             CSSS----EEE-------EEEEEECCCC-BHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEEC
T ss_pred             CCCC----cee-------EEEEehhhhc-CHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEc
Confidence            2211    000       1137888875 99999976543 488889999999999999999999999999999999999


Q ss_pred             cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCc
Q 001366          364 QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANE  443 (1092)
Q Consensus       364 ~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1092)
                      .++.+||+|||+++.....                                                             
T Consensus       155 ~~~~~kl~Dfg~a~~~~~~-------------------------------------------------------------  173 (308)
T 3g33_A          155 SGGTVKLADFGLARIYSYQ-------------------------------------------------------------  173 (308)
T ss_dssp             TTSCEEECSCSCTTTSTTC-------------------------------------------------------------
T ss_pred             CCCCEEEeeCccccccCCC-------------------------------------------------------------
Confidence            9999999999988653310                                                             


Q ss_pred             cccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHH
Q 001366          444 SDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       444 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~  523 (1092)
                                                                 ...+..+||++|+|||++.+..++.++|||||||+||
T Consensus       174 -------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  210 (308)
T 3g33_A          174 -------------------------------------------MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFA  210 (308)
T ss_dssp             -------------------------------------------CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHH
T ss_pred             -------------------------------------------cccCCccccccccCchHHcCCCCCchHHHHHHHHHHH
Confidence                                                       0012457899999999999999999999999999999


Q ss_pred             HHcCC---CCcHHHHHHHHHhccccCCCC-------------------------CCCCCChhHHHHHHhccccCCCCCCC
Q 001366          524 ELFGR---FDSERALAAAMSDLRDRILPP-------------------------SFLSENPKEAGFCLWQLHPEPLSRPT  575 (1092)
Q Consensus       524 ell~~---f~~~~~~~~~~~~~~~~~~p~-------------------------~~~~~~~~~~~li~~lL~~dP~~Rps  575 (1092)
                      ||+++   |.+................++                         .....++.+.+|+.+||++||.+|||
T Consensus       211 ~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  290 (308)
T 3g33_A          211 EMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRIS  290 (308)
T ss_dssp             HTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCC
T ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCC
Confidence            99986   544333333222221110000                         11345678899999999999999999


Q ss_pred             HHHHhhhhhhhhh
Q 001366          576 TREILQSEVTNEF  588 (1092)
Q Consensus       576 a~eiL~~~~~~~~  588 (1092)
                      +.|+|+||||...
T Consensus       291 ~~e~l~h~~~~~~  303 (308)
T 3g33_A          291 AFRALQHSYLHKD  303 (308)
T ss_dssp             HHHHHTSTTC---
T ss_pred             HHHHhcCccccCC
Confidence            9999999999864

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.98  E-value=6.8e-33  Score=318.17  Aligned_cols=253  Identities=18%  Similarity=0.160  Sum_probs=183.9

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccC-CCCCCCccccceecCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASN-ASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  285 (1092)
                      ...|.+.+.++  +.|.||++....    .+..++.|+.......  .......++..++... +|||++.++.....+.
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~   83 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKK----TDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES   83 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETT----TTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred             hhheEEEEEEEecCCeEEEEEEECC----CCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCC
Confidence            44566555554  689999997632    3455666665332221  1222333445555544 8999999877765443


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                      ..+                .+|||++|++|.+++...+ .+++.+++.++.||+.||+|||++||+||||||+|||++.+
T Consensus        84 ~~~----------------lv~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~  146 (345)
T 3a8x_A           84 RLF----------------FVIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSE  146 (345)
T ss_dssp             EEE----------------EEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTT
T ss_pred             EEE----------------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCC
Confidence            333                3899999999999997754 47788999999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++......                                                              
T Consensus       147 g~~kL~DFG~a~~~~~~~--------------------------------------------------------------  164 (345)
T 3a8x_A          147 GHIKLTDYGMCKEGLRPG--------------------------------------------------------------  164 (345)
T ss_dssp             SCEEECCGGGCBCSCCTT--------------------------------------------------------------
T ss_pred             CCEEEEeccccccccCCC--------------------------------------------------------------
Confidence            999999999987532100                                                              


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                                                               ......+||++|+|||++.+..++.++|||||||+||||
T Consensus       165 -----------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  203 (345)
T 3a8x_A          165 -----------------------------------------DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEM  203 (345)
T ss_dssp             -----------------------------------------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHH
Confidence                                                     001256899999999999999999999999999999999


Q ss_pred             cCC---CCcH--------HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH------HHHhhhhhhhhh
Q 001366          526 FGR---FDSE--------RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT------REILQSEVTNEF  588 (1092)
Q Consensus       526 l~~---f~~~--------~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa------~eiL~~~~~~~~  588 (1092)
                      +++   |...        .........+..... ......++.+.+||.+||++||.+||++      .||++||||...
T Consensus       204 l~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~-~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~  282 (345)
T 3a8x_A          204 MAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI-RIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  282 (345)
T ss_dssp             HHSSCTTTTTTC-------CHHHHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTC
T ss_pred             HhCCCCcCCcccccccccccHHHHHHHHHcCCC-CCCCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCC
Confidence            986   4220        111111222211111 1112457889999999999999999996      899999999764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.98  E-value=1.6e-30  Score=295.28  Aligned_cols=298  Identities=15%  Similarity=0.200  Sum_probs=234.9

Q ss_pred             hhhccchhhhhhccccccCCCC-cEE--eEc---CCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCC---CCEEE
Q 001366          725 LLRDRENLFLAQQDQEIQNPTD-RLG--AFF---DGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRD---EDHFA  795 (1092)
Q Consensus       725 ~l~~~~~~~~~~~~~~~~~~~~-~l~--~~~---D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspd---g~~la  795 (1092)
                      ++.+|.+.+..+.    ++|++ .+.  ++.   |+.+++|++...+......    .+|...|.+++|+|+   +.+|+
T Consensus        13 ~~~~h~~~v~~~~----~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~   84 (357)
T 3i2n_A           13 IQKGFNYTVFDCK----WVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE----IEKAKPIKCGTFGATSLQQRYLA   84 (357)
T ss_dssp             EEEECSSCEEEEE----ECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE----EEESSCEEEEECTTCCTTTCCEE
T ss_pred             hccCCCCceEEEE----EcCCCceEEEecCccCCCcEEEEEeCCCCcccceee----ecccCcEEEEEEcCCCCCCceEE
Confidence            3455666666554    45644 343  333   8999999988765443322    268899999999998   69999


Q ss_pred             EEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEE------ecCCCCEEEEEECCCcEEEEECCCCc-eEEEee
Q 001366          796 AAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCW------NNYIKNYLASADYDGVVKLWDACTGQ-TVSHYI  868 (1092)
Q Consensus       796 tgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~------sp~~~~~LaSgs~DgtV~IWD~~tg~-~i~~l~  868 (1092)
                      +|+.|+.|++||+....      .......+|...|.+++|      +|+ +.+|++++.||+|++||+.+++ .+..+.
T Consensus        85 ~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  157 (357)
T 3i2n_A           85 TGDFGGNLHIWNLEAPE------MPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSRDGTVKVWDPRQKDDPVANME  157 (357)
T ss_dssp             EEETTSCEEEECTTSCS------SCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred             EecCCCeEEEEeCCCCC------ccEEEEEecccceEEEeeccccccCCC-ccEEEEEeCCCeEEEEeCCCCCCcceecc
Confidence            99999999999987521      122344578999999976      455 8899999999999999999887 677776


Q ss_pred             ccCc----cEEEEE----EecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEcc---CCCeEEEEEECCCe
Q 001366          869 EHEK----RAWSVD----FSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSA---HSSHLLAFGSADYR  937 (1092)
Q Consensus       869 ~h~~----~V~sv~----fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp---~~~~~latgs~Dg~  937 (1092)
                      .|..    .|++++    |+| ++.+|++|+.|+.|++||+++++......+...|.+++|+|   ++. +|++|+.||.
T Consensus       158 ~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~  235 (357)
T 3i2n_A          158 PVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMN-KLVATSLEGK  235 (357)
T ss_dssp             CCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCC-EEEEEESTTE
T ss_pred             ccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCC-EEEEECCCCe
Confidence            6554    799998    567 88999999999999999999999887777889999999999   774 8999999999


Q ss_pred             EEEEEcCCCCcce----EEecCCCCCeEEEEEcC-CC-EEEEEECCCeEEEEEcCCCCCCCC-----------CCCceeE
Q 001366          938 TYCYDLRNARAPW----CVLAGHEKAVSYVKFLD-SG-TLVTASTDNKLKLWDLKRTSHTGP-----------STNACSL 1000 (1092)
Q Consensus       938 I~vwDlr~~~~~~----~~l~~H~~~V~~v~fs~-~~-~L~Sgs~Dg~I~vWDl~~~~~~~~-----------~~~~~~~ 1000 (1092)
                      |++||+++.+...    ..+.+|...|.+++|++ +. +|++++.||.|++||++.......           ....++.
T Consensus       236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~  315 (357)
T 3i2n_A          236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ  315 (357)
T ss_dssp             EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred             EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence            9999998764321    12348999999999995 44 699999999999999985432110           0114678


Q ss_pred             EEcCCCCCeEEEEEecCCCEEE-EEecCCcEEEEeCCCCC
Q 001366         1001 TFSGHTNEKNFVGLSTADGYIA-CGSESNEVYAYHRSLPM 1039 (1092)
Q Consensus      1001 ~l~~h~~~V~~v~~spdg~~la-sgs~Dg~I~Iwd~~~~~ 1039 (1092)
                      .+.+|...|++++|+|++.+|+ +|+.|+.|+||++....
T Consensus       316 ~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            8899999999999999999888 89999999999987654

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.98  E-value=5.9e-33  Score=328.11  Aligned_cols=253  Identities=14%  Similarity=0.102  Sum_probs=188.8

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.+  +|.|.||++...+    .+..++.|+......  ........++..++....||||+.++.....+...+ 
T Consensus        76 y~~~~~LG~G~fG~V~~~~~~~----~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~-  150 (437)
T 4aw2_A           76 FEILKVIGRGAFGEVAVVKLKN----ADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLY-  150 (437)
T ss_dssp             EEEEEEEEECSSEEEEEEEETT----TTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEE-
T ss_pred             eEEEEEEEeCCCEEEEEEEEcC----CCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEE-
Confidence            4444444  4789999998633    245556665422111  111111334455667789999998877655444333 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     .+||||+||+|.++|......+++..++.|+.||+.||+|||++||+||||||+||||+.++.+|
T Consensus       151 ---------------lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vk  215 (437)
T 4aw2_A          151 ---------------LVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIR  215 (437)
T ss_dssp             ---------------EEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEE
T ss_pred             ---------------EEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEE
Confidence                           38999999999999987656788889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++......                                                                  
T Consensus       216 L~DFGla~~~~~~~------------------------------------------------------------------  229 (437)
T 4aw2_A          216 LADFGSCLKLMEDG------------------------------------------------------------------  229 (437)
T ss_dssp             ECCCTTCEECCTTS------------------------------------------------------------------
T ss_pred             EcchhhhhhcccCC------------------------------------------------------------------
Confidence            99999987644100                                                                  


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-----CCCCCccccchhhhHHHHH
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-----GGVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-----~~~~t~~sDIwSLGvll~e  524 (1092)
                                                          ....+..+||++|+|||++.     ...|+.++|||||||+|||
T Consensus       230 ------------------------------------~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~e  273 (437)
T 4aw2_A          230 ------------------------------------TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYE  273 (437)
T ss_dssp             ------------------------------------CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHH
T ss_pred             ------------------------------------CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHH
Confidence                                                00011468999999999997     4678999999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhcc---ccCCCCCCCCCChhHHHHHHhccccCCCC--CCCHHHHhhhhhhhhh
Q 001366          525 LFGR---FDSERALAAAMSDLR---DRILPPSFLSENPKEAGFCLWQLHPEPLS--RPTTREILQSEVTNEF  588 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~li~~lL~~dP~~--Rpsa~eiL~~~~~~~~  588 (1092)
                      |++|   |.+..........+.   ...+|+.....++.+.+||.+||+.+|.+  ||++.||++||||...
T Consensus       274 lltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff~~i  345 (437)
T 4aw2_A          274 MLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSGI  345 (437)
T ss_dssp             HHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGGTTC
T ss_pred             HHhCCCCCCCCChhHHHHhhhhccccccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhCCCccCCC
Confidence            9985   554443333333322   23455555667899999999999988888  9999999999999865

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.97  E-value=1.1e-32  Score=313.80  Aligned_cols=250  Identities=15%  Similarity=0.129  Sum_probs=184.8

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCc-----hhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-----SDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      |.+.+.+  ++.|.||++...    ..+..++.|+.......     .......++..++...+|||++.+++.......
T Consensus        13 y~~~~~lG~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   88 (326)
T 2y0a_A           13 YDTGEELGSGQFAVVKKCREK----STGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD   88 (326)
T ss_dssp             EEEEEEEECCSSEEEEEEEET----TTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             eEeceEEeeCCCeEEEEEEEC----CCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence            4444444  368999999763    22455666554322211     122334466777888899999988776543332


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                .+||||+|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||++..+
T Consensus        89 ~~----------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~  151 (326)
T 2y0a_A           89 VI----------------LILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRN  151 (326)
T ss_dssp             EE----------------EEEECCCSCBHHHHHTTSS-CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSS
T ss_pred             EE----------------EEEEcCCCCCHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCC
Confidence            22                3899999999999997654 577889999999999999999999999999999999999887


Q ss_pred             ----cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccC
Q 001366          367 ----QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN  442 (1092)
Q Consensus       367 ----~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1092)
                          .+||+|||+++.....                                                            
T Consensus       152 ~~~~~~kl~Dfg~a~~~~~~------------------------------------------------------------  171 (326)
T 2y0a_A          152 VPKPRIKIIDFGLAHKIDFG------------------------------------------------------------  171 (326)
T ss_dssp             SSSCCEEECCCTTCEECCTT------------------------------------------------------------
T ss_pred             CCCCCEEEEECCCCeECCCC------------------------------------------------------------
Confidence                8999999998764310                                                            


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHH
Q 001366          443 ESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLF  522 (1092)
Q Consensus       443 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll  522 (1092)
                                                                  ......+||+.|+|||++.+..++.++|||||||+|
T Consensus       172 --------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il  207 (326)
T 2y0a_A          172 --------------------------------------------NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT  207 (326)
T ss_dssp             --------------------------------------------SCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred             --------------------------------------------CccccccCCcCcCCceeecCCCCCcHHHHHHHHHHH
Confidence                                                        001145689999999999999999999999999999


Q ss_pred             HHHcCC---CCcHHHHHHHHHh--ccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          523 FELFGR---FDSERALAAAMSD--LRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       523 ~ell~~---f~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |||+++   |.+..........  ......++.+...++.+.+|+.+||++||.+|||+.|+|+||||...
T Consensus       208 ~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  278 (326)
T 2y0a_A          208 YILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPK  278 (326)
T ss_dssp             HHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTSCC
T ss_pred             HHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcCCCccCC
Confidence            999985   4433332222222  22111122234567889999999999999999999999999999754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=282.57  Aligned_cols=291  Identities=15%  Similarity=0.202  Sum_probs=241.1

Q ss_pred             chhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 001366          723 NDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKK  802 (1092)
Q Consensus       723 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~  802 (1092)
                      ...+.+|.+.+..+.+   .+..-.++++.|+.+++|+.........     +..|...|.+++|+|++++|++|+.|+.
T Consensus        11 ~~~l~~h~~~v~~~~~---~~~~~l~s~~~dg~v~vw~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~   82 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA---VDDSKVASVSRDGTVRLWSKDDQWLGTV-----VYTGQGFLNSVCYDSEKELLLFGGKDTM   82 (313)
T ss_dssp             EEEECCCSSCEEEEEE---EETTEEEEEETTSEEEEEEESSSEEEEE-----EEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             HHHhhCCCCCcEEEEe---cCCCEEEEEEcCCcEEEEECCCCEEEEE-----eecCCccEEEEEECCCCCEEEEecCCCe
Confidence            3456778777766654   1223356788999999999877655443     4468999999999999999999999999


Q ss_pred             EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecC
Q 001366          803 IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQV  882 (1092)
Q Consensus       803 I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~  882 (1092)
                      |++|++.....    .........|...|.+++|+   +++|++++.||+|++||  .++.+..+..|...+.++.|.|.
T Consensus        83 i~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~  153 (313)
T 3odt_A           83 INGVPLFATSG----EDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF  153 (313)
T ss_dssp             EEEEETTCCTT----SCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET
T ss_pred             EEEEEeeecCC----CCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC
Confidence            99999875221    12223445789999999994   56999999999999999  77888899999999999999997


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCceeeeEe--cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCe
Q 001366          883 HPTKLASGSDDCSVKLWNINEKNSLATIK--NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAV  960 (1092)
Q Consensus       883 ~~~~laSgs~Dg~I~iWDl~~~~~l~~l~--~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V  960 (1092)
                      ++..+++++.|+.|++||.  ++.+..+.  +...|.+++|+|++.  +++++.|+.|++||+++.+ ++..+.+|...|
T Consensus       154 ~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i  228 (313)
T 3odt_A          154 SENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGD-VLRTYEGHESFV  228 (313)
T ss_dssp             TTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCC-EEEEEECCSSCE
T ss_pred             CCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchh-hhhhhhcCCceE
Confidence            8899999999999999994  45555555  678899999999984  8899999999999999875 467788999999


Q ss_pred             EEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCc
Q 001366          961 SYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       961 ~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                      .+++|++++.|++++.||.|++||+.        .+.++..+..|...|++++|+|++. +++++.|+.|++|++..++.
T Consensus       229 ~~~~~~~~~~l~~~~~dg~v~iwd~~--------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          229 YCIKLLPNGDIVSCGEDRTVRIWSKE--------NGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             EEEEECTTSCEEEEETTSEEEEECTT--------TCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred             EEEEEecCCCEEEEecCCEEEEEECC--------CCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence            99999966689999999999999998        4567888999999999999999998 56789999999999987765


Q ss_pred             eeee
Q 001366         1041 ITSY 1044 (1092)
Q Consensus      1041 i~~~ 1044 (1092)
                      +...
T Consensus       300 ~~~~  303 (313)
T 3odt_A          300 ASED  303 (313)
T ss_dssp             CC--
T ss_pred             eehh
Confidence            5443

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.97  E-value=1.5e-32  Score=316.23  Aligned_cols=251  Identities=16%  Similarity=0.170  Sum_probs=185.2

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccC-CCCCCCccccceecCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  286 (1092)
                      ..|.+.+.++  |.|.||++...+    .+..++.|+......  ........++..++... .||+++.+.........
T Consensus        20 ~~y~~~~~lG~G~fg~V~~~~~~~----~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~   95 (353)
T 2i0e_A           20 TDFNFLMVLGKGSFGKVMLSERKG----TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDR   95 (353)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETT----EEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECC----CCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCE
Confidence            3455555554  789999998732    345566666532211  11222333444455544 89999987776554333


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                .+|||++||+|.++|...+ .+++.+++.|+.||+.||+|||++||+||||||+||||+.++
T Consensus        96 ~~----------------lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g  158 (353)
T 2i0e_A           96 LY----------------FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEG  158 (353)
T ss_dssp             EE----------------EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS
T ss_pred             EE----------------EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCC
Confidence            33                3899999999999998765 477879999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++......                                                               
T Consensus       159 ~vkL~DFG~a~~~~~~~---------------------------------------------------------------  175 (353)
T 2i0e_A          159 HIKIADFGMCKENIWDG---------------------------------------------------------------  175 (353)
T ss_dssp             CEEECCCTTCBCCCCTT---------------------------------------------------------------
T ss_pred             cEEEEeCCcccccccCC---------------------------------------------------------------
Confidence            99999999987532100                                                               


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              ......+||+.|+|||++.+..++.++|||||||+||||+
T Consensus       176 ----------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  215 (353)
T 2i0e_A          176 ----------------------------------------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEML  215 (353)
T ss_dssp             ----------------------------------------CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHH
Confidence                                                    0011567999999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      +|   |.+..........+......|  ...++.+.+||.+||++||.+||+     +++|++||||...
T Consensus       216 ~G~~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~~  283 (353)
T 2i0e_A          216 AGQAPFEGEDEDELFQSIMEHNVAYP--KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYI  283 (353)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGGGTTC
T ss_pred             cCCCCCCCCCHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCccccCC
Confidence            85   554443333333333322222  245788999999999999999995     6999999999764

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.97  E-value=4.8e-32  Score=311.63  Aligned_cols=241  Identities=17%  Similarity=0.163  Sum_probs=171.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||++....    .+..++.|+.....   ......++..++...+|||++.+++........+           
T Consensus        63 ~G~~g~Vy~~~~~~----~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~-----------  124 (349)
T 2w4o_A           63 RGATSIVYRCKQKG----TQKPYALKVLKKTV---DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEIS-----------  124 (349)
T ss_dssp             ECSSEEEEEEEETT----TCCEEEEEEEEC-------------CHHHHHCCCTTBCCEEEEEECSSEEE-----------
T ss_pred             eCCCEEEEEEEECC----CCcEEEEEEeccch---hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEE-----------
Confidence            34789999998632    24456666553221   2233345667778889999998776654332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc---CCcEEEeccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ---SNQVKYIGPIIQ  376 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~---~~~vkl~Dfg~~  376 (1092)
                           ++|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||++.   ++.+||+|||++
T Consensus       125 -----lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a  198 (349)
T 2w4o_A          125 -----LVLELVTGGELFDRIVEKG-YYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLS  198 (349)
T ss_dssp             -----EEECCCCSCBHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC--
T ss_pred             -----EEEEeCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccc
Confidence                 3899999999999997654 4778899999999999999999999999999999999975   889999999998


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       199 ~~~~~~--------------------------------------------------------------------------  204 (349)
T 2w4o_A          199 KIVEHQ--------------------------------------------------------------------------  204 (349)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCcc--------------------------------------------------------------------------
Confidence            764310                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                    ......+||+.|+|||++.+..++.++|||||||+||||+++   |....
T Consensus       205 ------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  254 (349)
T 2w4o_A          205 ------------------------------VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER  254 (349)
T ss_dssp             --------------------------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTT
T ss_pred             ------------------------------cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCc
Confidence                                          001145789999999999999999999999999999999986   43332


Q ss_pred             HHHHHHHhcc---ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          534 ALAAAMSDLR---DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~---~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      .....+..+.   ....++.+...++.+.+|+.+||.+||.+|||+.|+|+||||...
T Consensus       255 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  312 (349)
T 2w4o_A          255 GDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGK  312 (349)
T ss_dssp             CHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTTST
T ss_pred             ccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCC
Confidence            2222222222   222234445678889999999999999999999999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=3.6e-30  Score=297.54  Aligned_cols=285  Identities=14%  Similarity=0.169  Sum_probs=226.0

Q ss_pred             hhccchhhhhhccccccCCCC---cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcC-CCCEEEEEeCCC
Q 001366          726 LRDRENLFLAQQDQEIQNPTD---RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDR-DEDHFAAAGVSK  801 (1092)
Q Consensus       726 l~~~~~~~~~~~~~~~~~~~~---~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fsp-dg~~latgg~D~  801 (1092)
                      +.+|...+..+.    ++|++   .++++.|+.+++|+....+....+.   +.+|...|.+++|+| ++.+|++|+.|+
T Consensus        69 ~~~h~~~v~~~~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           69 ASPFDRRVTSLE----WHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ---GMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             ECCCSSCEEEEE----ECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC---CCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccCCCCCEEEEE----ECCCCCCEEEEEcCCCeEEEEeCCCcccceeee---cCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            445555555543    34544   4577899999999988655443332   347999999999999 789999999999


Q ss_pred             cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEec
Q 001366          802 KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ  881 (1092)
Q Consensus       802 ~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp  881 (1092)
                      .|+|||+....     .........+...|.+++|+|+ +.+|++|+.||+|++||+ +++.+..+.+|...|.+++|+|
T Consensus       142 ~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~  214 (383)
T 3ei3_B          142 ATTLRDFSGSV-----IQVFAKTDSWDYWYCCVDVSVS-RQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP  214 (383)
T ss_dssp             EEEEEETTSCE-----EEEEECCCCSSCCEEEEEEETT-TTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred             EEEEEECCCCc-----eEEEeccCCCCCCeEEEEECCC-CCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence            99999987411     1111111234588999999998 899999999999999999 6888999999999999999999


Q ss_pred             CCCC-EEEEEeCCCcEEEEecCC----CceeeeEecCCceEEEEEcc-CCCeEEEEEECCCeEEEEEcCCCCcceEEecC
Q 001366          882 VHPT-KLASGSDDCSVKLWNINE----KNSLATIKNIANVCCVQFSA-HSSHLLAFGSADYRTYCYDLRNARAPWCVLAG  955 (1092)
Q Consensus       882 ~~~~-~laSgs~Dg~I~iWDl~~----~~~l~~l~~~~~V~sl~fsp-~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~  955 (1092)
                       ++. +|++|+.|++|++||+++    +.++..+.+...|.+++|+| ++. +|++++.|+.|++||+++.+.. ..+.+
T Consensus       215 -~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~-~~~~~  291 (383)
T 3ei3_B          215 -RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKP-DQIII  291 (383)
T ss_dssp             -SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSC-SEEEE
T ss_pred             -CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccc-ccccc
Confidence             666 999999999999999998    66777888899999999999 874 8999999999999999987653 33333


Q ss_pred             C-------CC----------CeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC--CCCCeEEEEEec
Q 001366          956 H-------EK----------AVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG--HTNEKNFVGLST 1016 (1092)
Q Consensus       956 H-------~~----------~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~--h~~~V~~v~~sp 1016 (1092)
                      |       ..          .+..++|++++.+ +|+.|+.|++||+.        .+.++..+.+  |...+..++|+|
T Consensus       292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~--------~~~~~~~l~~~~~~~~~~~~~~s~  362 (383)
T 3ei3_B          292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN--------SGGLVHQLRDPNAAGIISLNKFSP  362 (383)
T ss_dssp             CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT--------TCCEEEEECBTTBCSCCCEEEECT
T ss_pred             ccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC--------CCceeeeecCCCCCceEEEEEEec
Confidence            3       22          3444666644444 77899999999998        4566788876  567788889999


Q ss_pred             CCCEEEEEecCCcEEEEeCCC
Q 001366         1017 ADGYIACGSESNEVYAYHRSL 1037 (1092)
Q Consensus      1017 dg~~lasgs~Dg~I~Iwd~~~ 1037 (1092)
                      ++.+|++|+ |+.|+||++.+
T Consensus       363 ~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          363 TGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TSSEEEEEE-TTEEEEEECC-
T ss_pred             CccEEEEec-CCcEEEEecCC
Confidence            999999997 99999999763

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.3e-32  Score=315.86  Aligned_cols=257  Identities=13%  Similarity=0.117  Sum_probs=184.4

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc----hhhHhhhhhhhhhccCCCCCCCccccceecCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP----SDAALKAAGAMMVASNASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (1092)
                      ..|.+.+.++  |.|.||++....    .+..++.|+.......    .......++..++...+|||++.+++......
T Consensus        10 ~~y~~~~~lg~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   85 (346)
T 1ua2_A           10 KRYEKLDFLGEGQFATVYKARDKN----TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS   85 (346)
T ss_dssp             ---CEEEEEEEETTEEEEEEECSS----CCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred             cccEEEeEEeecCCEEEEEEEECC----CCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC
Confidence            3455555554  789999998732    2455666555321111    11123446677788889999998877654333


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                      ..+                .+|||++| +|.+++......++..+++.++.||+.||+|||++||+||||||+|||++.+
T Consensus        86 ~~~----------------lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~  148 (346)
T 1ua2_A           86 NIS----------------LVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDEN  148 (346)
T ss_dssp             CCE----------------EEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTT
T ss_pred             ceE----------------EEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCC
Confidence            222                37999997 8999998776678888999999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++.+....                                                              
T Consensus       149 ~~~kl~Dfg~a~~~~~~~--------------------------------------------------------------  166 (346)
T 1ua2_A          149 GVLKLADFGLAKSFGSPN--------------------------------------------------------------  166 (346)
T ss_dssp             CCEEECCCGGGSTTTSCC--------------------------------------------------------------
T ss_pred             CCEEEEecccceeccCCc--------------------------------------------------------------
Confidence            999999999987643100                                                              


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~e  524 (1092)
                                                               ...+..+||++|+|||++.+ ..++.++|||||||+|||
T Consensus       167 -----------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~e  205 (346)
T 1ua2_A          167 -----------------------------------------RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAE  205 (346)
T ss_dssp             -----------------------------------------CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHH
Confidence                                                     01124578999999999976 458999999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhccc--cCCCC------------------------CCCCCChhHHHHHHhccccCCCCCCC
Q 001366          525 LFGR---FDSERALAAAMSDLRD--RILPP------------------------SFLSENPKEAGFCLWQLHPEPLSRPT  575 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~~~--~~~p~------------------------~~~~~~~~~~~li~~lL~~dP~~Rps  575 (1092)
                      |+++   |.+.............  ...+.                        .+...++.+.+|+.+||++||.+|||
T Consensus       206 ll~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt  285 (346)
T 1ua2_A          206 LLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARIT  285 (346)
T ss_dssp             HHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCC
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCC
Confidence            9986   4444333333222211  00000                        01344578899999999999999999


Q ss_pred             HHHHhhhhhhhhhhccc
Q 001366          576 TREILQSEVTNEFQEVC  592 (1092)
Q Consensus       576 a~eiL~~~~~~~~~~~~  592 (1092)
                      +.|+|+||||...+...
T Consensus       286 ~~ell~h~~f~~~~~~~  302 (346)
T 1ua2_A          286 ATQALKMKYFSNRPGPT  302 (346)
T ss_dssp             HHHHHTSGGGTSSSCCC
T ss_pred             HHHHhcChhhhcCCCCC
Confidence            99999999998765444

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.97  E-value=1.6e-32  Score=326.25  Aligned_cols=251  Identities=18%  Similarity=0.163  Sum_probs=183.1

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      ..|.+.+.++  |.|.||++...    ..+..++.|+.....  .........++..++...+|||++.++.....+...
T Consensus       148 ~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~  223 (446)
T 4ejn_A          148 NEFEYLKLLGKGTFGKVILVKEK----ATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRL  223 (446)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEE
T ss_pred             HHcEEeEEEeeCcCEEEEEEEEc----CCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEE
Confidence            3455555554  78999998752    235566666653221  112223345666778888999999887765544433


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCC
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~  366 (1092)
                      +                ++|||++|++|.+++...+ .++..+++.|+.||+.||+|||+ +||+||||||+||||+.++
T Consensus       224 ~----------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~  286 (446)
T 4ejn_A          224 C----------------FVMEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDG  286 (446)
T ss_dssp             E----------------EEECCCSSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSS
T ss_pred             E----------------EEEeeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCC
Confidence            3                3899999999999997664 57788999999999999999998 9999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++.....                                                                
T Consensus       287 ~~kl~DFG~a~~~~~~----------------------------------------------------------------  302 (446)
T 4ejn_A          287 HIKITDFGLCKEGIKD----------------------------------------------------------------  302 (446)
T ss_dssp             CEEECCCCCCCTTCC-----------------------------------------------------------------
T ss_pred             CEEEccCCCceeccCC----------------------------------------------------------------
Confidence            9999999998753210                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                             .......+||++|+|||++.+..++.++|||||||+||||+
T Consensus       303 ---------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  343 (446)
T 4ejn_A          303 ---------------------------------------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM  343 (446)
T ss_dssp             -------------------------------------------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHh
Confidence                                                   00112567999999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      ++   |...................|  ...++.+.+||.+||++||.+||     ++.|+|+||||...
T Consensus       344 ~g~~Pf~~~~~~~~~~~i~~~~~~~p--~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f~~~  411 (446)
T 4ejn_A          344 CGRLPFYNQDHEKLFELILMEEIRFP--RTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGI  411 (446)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             hCCCCCCCCCHHHHHHHHHhCCCCCC--ccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCccccCC
Confidence            85   544333333222222222112  23578999999999999999999     99999999999875

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.97  E-value=1.3e-32  Score=322.24  Aligned_cols=245  Identities=18%  Similarity=0.157  Sum_probs=172.7

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..++.|.||++...    ..+..++.|+....     .........+.+...||||+.+++........     ...   
T Consensus        71 G~G~~g~V~~~~~~----~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~-----~~~---  133 (400)
T 1nxk_A           71 GLGINGKVLQIFNK----RTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAG-----RKC---  133 (400)
T ss_dssp             EEETTEEEEEEEET----TTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT-----EEE---
T ss_pred             eeccCeEEEEEEEC----CCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccC-----CcE---
Confidence            45678999999762    23556677665211     11111122233566899999876654320000     000   


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc---CCcEEEeccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ---SNQVKYIGPI  374 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~---~~~vkl~Dfg  374 (1092)
                          ..++||||+||+|.++|...+ ..+++.+++.|++||+.||+|||++||+||||||+||||+.   ++.+||+|||
T Consensus       134 ----~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG  209 (400)
T 1nxk_A          134 ----LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFG  209 (400)
T ss_dssp             ----EEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCT
T ss_pred             ----EEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecc
Confidence                113899999999999997654 35888899999999999999999999999999999999997   7889999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.....                                                                        
T Consensus       210 ~a~~~~~~------------------------------------------------------------------------  217 (400)
T 1nxk_A          210 FAKETTSH------------------------------------------------------------------------  217 (400)
T ss_dssp             TCEECC--------------------------------------------------------------------------
T ss_pred             cccccCCC------------------------------------------------------------------------
Confidence            98763310                                                                        


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCc
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                      ...+..+||++|+|||++.+..|+.++|||||||+||||+++   |..
T Consensus       218 --------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  265 (400)
T 1nxk_A          218 --------------------------------NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS  265 (400)
T ss_dssp             -----------------------------------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             --------------------------------CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCC
Confidence                                            011256789999999999999999999999999999999986   433


Q ss_pred             HHH------HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          532 ERA------LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       532 ~~~------~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ...      ....+.........+.+...++.+.+||.+||+.||.+|||+.|||+||||...
T Consensus       266 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~  328 (400)
T 1nxk_A          266 NHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS  328 (400)
T ss_dssp             CTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             CccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccCC
Confidence            211      111111111122223445678899999999999999999999999999999864

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.97  E-value=6.9e-32  Score=324.13  Aligned_cols=251  Identities=16%  Similarity=0.220  Sum_probs=190.2

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.++  +.|.||++...    ..+..++.|+......  ........++...+...+||||+.++.....+...+
T Consensus        27 ~y~~~~~lg~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  102 (484)
T 3nyv_A           27 RYKGQRVLGKGSFGEVILCKDK----ITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFY  102 (484)
T ss_dssp             HEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             ceEEeeEEecCCCEEEEEEEEC----CCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            355555444  78999998762    2356667766533222  223445566777888899999999877655433333


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE---ccC
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL---LQS  365 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill---~~~  365 (1092)
                                      ++||||.|++|.+++...+ .++..+++.|++||+.||.|||++||+||||||+|||+   +.+
T Consensus       103 ----------------lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~  165 (484)
T 3nyv_A          103 ----------------LVGEVYTGGELFDEIISRK-RFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKD  165 (484)
T ss_dssp             ----------------EEECCCCSCBHHHHHHTCS-CCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTT
T ss_pred             ----------------EEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCC
Confidence                            3899999999999997765 47777999999999999999999999999999999999   567


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++.....                                                               
T Consensus       166 ~~~kl~Dfg~a~~~~~~---------------------------------------------------------------  182 (484)
T 3nyv_A          166 ANIRIIDFGLSTHFEAS---------------------------------------------------------------  182 (484)
T ss_dssp             CCEEECCTTHHHHBCCC---------------------------------------------------------------
T ss_pred             CcEEEEeeeeeEEcccc---------------------------------------------------------------
Confidence            89999999998764310                                                               


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                                                               ......+||++|+|||++.+ .++.++|||||||++|+|
T Consensus       183 -----------------------------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~l  220 (484)
T 3nyv_A          183 -----------------------------------------KKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYIL  220 (484)
T ss_dssp             -----------------------------------------CSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------cccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHH
Confidence                                                     01124579999999999976 699999999999999999


Q ss_pred             cCC---CCcHHHHHHHHHhcccc--CCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          526 FGR---FDSERALAAAMSDLRDR--ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       526 l~~---f~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      +++   |.+..............  ...+.+...++.+.+|+.+||++||.+|||+.|+|+||||....
T Consensus       221 l~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~~  289 (484)
T 3nyv_A          221 LSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYT  289 (484)
T ss_dssp             HHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHHHT
T ss_pred             HHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChhhcccc
Confidence            985   54444333332222222  22244556788999999999999999999999999999998754

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.97  E-value=4.6e-32  Score=308.06  Aligned_cols=244  Identities=18%  Similarity=0.213  Sum_probs=185.3

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      -..+|.|.||+|...    ..+..++.|+..... ........++...+...+|||++.++.........+         
T Consensus        53 lg~G~~g~V~~a~~~----~~g~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~---------  118 (321)
T 2c30_A           53 IGEGSTGIVCLAREK----HSGRQVAVKMMDLRK-QQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELW---------  118 (321)
T ss_dssp             EEEETTEEEEEEEET----TTCCEEEEEEEETTT-CCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE---------
T ss_pred             eccCCCeEEEEEEEC----CCCcEEEEEEEeccc-hhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEE---------
Confidence            455688999999753    125566776653322 222344556777788889999998776655433333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||++|++|.+++...  .++..++..++.||+.||+|||++||+||||||+||+++.++.+|++|||+++
T Consensus       119 -------lv~e~~~~~~L~~~l~~~--~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~  189 (321)
T 2c30_A          119 -------VLMEFLQGGALTDIVSQV--RLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCA  189 (321)
T ss_dssp             -------EEECCCCSCBHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             -------EEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeee
Confidence                   389999999999999754  57888999999999999999999999999999999999999999999999887


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       190 ~~~~~~--------------------------------------------------------------------------  195 (321)
T 2c30_A          190 QISKDV--------------------------------------------------------------------------  195 (321)
T ss_dssp             ECCSSS--------------------------------------------------------------------------
T ss_pred             ecccCc--------------------------------------------------------------------------
Confidence            643100                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                   .......||+.|+|||++.+..++.++|||||||+||||+++   |.....
T Consensus       196 -----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~  246 (321)
T 2c30_A          196 -----------------------------PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP  246 (321)
T ss_dssp             -----------------------------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             -----------------------------cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence                                         001145789999999999999999999999999999999986   433322


Q ss_pred             HHHHHHhccccCCC--CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          535 LAAAMSDLRDRILP--PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p--~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      . ..+..+.....+  ......++.+.+|+.+||++||.+|||+.++|+||||...
T Consensus       247 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~  301 (321)
T 2c30_A          247 V-QAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQT  301 (321)
T ss_dssp             H-HHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGGGC
T ss_pred             H-HHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhccC
Confidence            2 222233322222  1223457889999999999999999999999999999764

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.97  E-value=1.7e-32  Score=319.85  Aligned_cols=253  Identities=15%  Similarity=0.134  Sum_probs=181.5

Q ss_pred             ccceeeeCCCCCccccccccccccccccccCchh-hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          222 GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       222 g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      |.|.||++....    .+..++.|++........ .....++..++...+||||+.+++....+...+            
T Consensus        39 ~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~------------  102 (389)
T 3gni_B           39 DLMTVNLARYKP----TGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW------------  102 (389)
T ss_dssp             TTEEEEEEEETT----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE------------
T ss_pred             CceEEEEEEEcC----CCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE------------
Confidence            678999998732    356667766543322222 233445777888889999999877766444333            


Q ss_pred             cCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                          ++||||+|++|.+++... ...++..+++.|+.||+.||+|||++||+||||||+||||+.++.+|++|||++...
T Consensus       103 ----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~  178 (389)
T 3gni_B          103 ----VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSM  178 (389)
T ss_dssp             ----EEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred             ----EEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceee
Confidence                389999999999999764 345888899999999999999999999999999999999999999999999988764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ........                                                                        
T Consensus       179 ~~~~~~~~------------------------------------------------------------------------  186 (389)
T 3gni_B          179 ISHGQRQR------------------------------------------------------------------------  186 (389)
T ss_dssp             EETTEECS------------------------------------------------------------------------
T ss_pred             cccccccc------------------------------------------------------------------------
Confidence            42110000                                                                        


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC--CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG--GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~--~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                              .........+||++|+|||++.+  ..++.++|||||||+||||+++   |.....
T Consensus       187 ------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  242 (389)
T 3gni_B          187 ------------------------VVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPA  242 (389)
T ss_dssp             ------------------------CBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCS
T ss_pred             ------------------------ccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCH
Confidence                                    00000113578999999999988  6799999999999999999986   433222


Q ss_pred             HHHHHHhccccC--------------------------------------------CCCCCCCCChhHHHHHHhccccCC
Q 001366          535 LAAAMSDLRDRI--------------------------------------------LPPSFLSENPKEAGFCLWQLHPEP  570 (1092)
Q Consensus       535 ~~~~~~~~~~~~--------------------------------------------~p~~~~~~~~~~~~li~~lL~~dP  570 (1092)
                      .......+....                                            ..+.....++.+.+|+.+||++||
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  322 (389)
T 3gni_B          243 TQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNP  322 (389)
T ss_dssp             TTHHHHC--------------------------------------------------------CCHHHHHHHHHHTCSCT
T ss_pred             HHHHHHHhcCCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCc
Confidence            212211111100                                            001223457889999999999999


Q ss_pred             CCCCCHHHHhhhhhhhhhhc
Q 001366          571 LSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       571 ~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      .+|||+.|+|+||||.....
T Consensus       323 ~~Rpta~ell~hp~f~~~~~  342 (389)
T 3gni_B          323 DARPSASTLLNHSFFKQIKR  342 (389)
T ss_dssp             TTSCCHHHHTTSGGGGGC--
T ss_pred             ccCCCHHHHhcCHHHHHHhh
Confidence            99999999999999987654

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.97  E-value=7.7e-33  Score=315.06  Aligned_cols=244  Identities=17%  Similarity=0.169  Sum_probs=164.2

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCC-CCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNA-SPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|.|.||++...    ..+..++.|+....    ......++...+.... ||||+.+++....+...+         
T Consensus        20 G~G~~g~V~~~~~~----~~~~~vavK~~~~~----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~---------   82 (325)
T 3kn6_A           20 GEGSFSICRKCVHK----KSNQAFAVKIISKR----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTF---------   82 (325)
T ss_dssp             EEETTEEEEEEEET----TTCCEEEEEEEEGG----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE---------
T ss_pred             ccCCCeEEEEEEEC----CCCCEEEEEEEChh----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEE---------
Confidence            44588999999863    23556666665321    1223334444555554 999999877655333232         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC---cEEEeccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN---QVKYIGPI  374 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~---~vkl~Dfg  374 (1092)
                             ++|||++|++|.+++...+ .+++.+++.|+.||+.||+|||++||+||||||+|||++..+   .+||+|||
T Consensus        83 -------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg  154 (325)
T 3kn6_A           83 -------LVMELLNGGELFERIKKKK-HFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFG  154 (325)
T ss_dssp             -------EEECCCCSCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCT
T ss_pred             -------EEEEccCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccc
Confidence                   3899999999999998764 578889999999999999999999999999999999998766   89999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.....                                                                        
T Consensus       155 ~a~~~~~~------------------------------------------------------------------------  162 (325)
T 3kn6_A          155 FARLKPPD------------------------------------------------------------------------  162 (325)
T ss_dssp             TCEECCC-------------------------------------------------------------------------
T ss_pred             cceecCCC------------------------------------------------------------------------
Confidence            98754310                                                                        


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCc
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                     .......+||++|+|||++.+..++.++|||||||++|||+++   |..
T Consensus       163 -------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  211 (325)
T 3kn6_A          163 -------------------------------NQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQS  211 (325)
T ss_dssp             ----------------------------------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-
T ss_pred             -------------------------------CCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCC
Confidence                                           0011245789999999999999999999999999999999986   433


Q ss_pred             HHH------HHHHHHhccccCCC---CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          532 ERA------LAAAMSDLRDRILP---PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       532 ~~~------~~~~~~~~~~~~~p---~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      ...      ....+..+.....+   +.+...++.+.+|+.+||++||.+|||+.++++||||.....
T Consensus       212 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~~~~~~  279 (325)
T 3kn6_A          212 HDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQ  279 (325)
T ss_dssp             ------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGGCTTCC
T ss_pred             CccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChhhccCcc
Confidence            221      12223333332222   122356888999999999999999999999999999987543

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.97  E-value=2.5e-32  Score=314.04  Aligned_cols=249  Identities=15%  Similarity=0.092  Sum_probs=188.2

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      ..+|.+.+.++  +.|.||++...    ..+..++.|+......  ........++..++...+||+++.++.....+..
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  115 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHK----ESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSN  115 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             HHHCEEEEEeecCcCcEEEEEEEC----CCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE
Confidence            34555555554  67999999763    2345566665422111  1122344556677888899999987766554333


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                .+|||++|++|.++|...+ .++..+++.|+.||+.||+|||++||+||||||+||||+.++
T Consensus       116 ~~----------------lv~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g  178 (350)
T 1rdq_E          116 LY----------------MVMEYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQG  178 (350)
T ss_dssp             EE----------------EEEECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS
T ss_pred             EE----------------EEEcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCC
Confidence            33                3899999999999998765 477879999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++.....                                                                
T Consensus       179 ~~kL~DFg~a~~~~~~----------------------------------------------------------------  194 (350)
T 1rdq_E          179 YIQVTDFGFAKRVKGR----------------------------------------------------------------  194 (350)
T ss_dssp             CEEECCCTTCEECSSC----------------------------------------------------------------
T ss_pred             CEEEcccccceeccCC----------------------------------------------------------------
Confidence            9999999998764310                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                                ....+||+.|+|||++.+..++.++|||||||+||||+
T Consensus       195 ------------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  232 (350)
T 1rdq_E          195 ------------------------------------------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMA  232 (350)
T ss_dssp             ------------------------------------------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHh
Confidence                                                      01457999999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      ++   |...................|  ...++.+.+||.+||++||.+||+     +.||++||||...
T Consensus       233 ~g~~Pf~~~~~~~~~~~i~~~~~~~p--~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~f~~~  300 (350)
T 1rdq_E          233 AGYPPFFADQPIQIYEKIVSGKVRFP--SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT  300 (350)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHCCCCCC--TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTC
T ss_pred             hCCCCCCCCCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCcCcCCC
Confidence            86   544433333323333222111  235788999999999999999998     9999999999764

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.3e-33  Score=318.51  Aligned_cols=252  Identities=15%  Similarity=0.178  Sum_probs=184.4

Q ss_pred             CCchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecC
Q 001366          209 SGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSN  284 (1092)
Q Consensus       209 ~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (1092)
                      ..+..|.+.+.++  +.|.||++...    ..+..++.|+.......  .......++..++...+||||+.+++.....
T Consensus         6 ~~i~~Y~i~~~lG~G~~g~V~~a~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~   81 (336)
T 3h4j_B            6 RHIGPYIIRETLGEGSFGKVKLATHY----KTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTP   81 (336)
T ss_dssp             SEETTEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEEC----CCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC
Confidence            3445677766665  78999999852    23556666665321111  1112344566778888999999987765543


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                      ...+                .+|||+ +|+|.+++...+ .++..+++.++.||+.||.|||++||+||||||+|||++.
T Consensus        82 ~~~~----------------lv~E~~-~g~l~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~  143 (336)
T 3h4j_B           82 TDIV----------------MVIEYA-GGELFDYIVEKK-RMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDD  143 (336)
T ss_dssp             SEEE----------------EEECCC-CEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECT
T ss_pred             CEEE----------------EEEECC-CCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcC
Confidence            3322                379999 789999997665 4777799999999999999999999999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.+||+|||+++.....                                                              
T Consensus       144 ~~~~kl~DFG~s~~~~~~--------------------------------------------------------------  161 (336)
T 3h4j_B          144 NLNVKIADFGLSNIMTDG--------------------------------------------------------------  161 (336)
T ss_dssp             TCCEEECCSSCTBTTTTS--------------------------------------------------------------
T ss_pred             CCCEEEEEeccceeccCC--------------------------------------------------------------
Confidence            999999999988654310                                                              


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVLFF  523 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvll~  523 (1092)
                                                                ......+||++|+|||++.+..+ +.++|||||||+||
T Consensus       162 ------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~  199 (336)
T 3h4j_B          162 ------------------------------------------NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLY  199 (336)
T ss_dssp             ------------------------------------------BTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHH
T ss_pred             ------------------------------------------cccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHH
Confidence                                                      00114579999999999998776 78999999999999


Q ss_pred             HHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          524 ELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       524 ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ||+++   |...... .....+... .+......++.+.+|+.+||.+||.+|||+.||++||||+..
T Consensus       200 ~ll~g~~Pf~~~~~~-~~~~~i~~~-~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~  265 (336)
T 3h4j_B          200 VMLVGRLPFDDEFIP-NLFKKVNSC-VYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVN  265 (336)
T ss_dssp             HHHHSSCSSBCSSST-TCBCCCCSS-CCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCHHHHTT
T ss_pred             HHHhCCCCCCCccHH-HHHHHHHcC-CCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhChhhccC
Confidence            99986   3322100 001111111 111222357889999999999999999999999999999864

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.97  E-value=3.3e-32  Score=314.49  Aligned_cols=249  Identities=15%  Similarity=0.134  Sum_probs=177.9

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.++  |.|+||++...    ..++.++.|+.....  .......++..++...+||||+.++.........+  
T Consensus        21 ~y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~--   92 (361)
T 3uc3_A           21 RYDFVKDIGSGNFGVARLMRDK----LTKELVAVKYIERGA--AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLA--   92 (361)
T ss_dssp             TEEEEEEESSSTTSSEEEEEET----TTCCEEEEEEEESST--TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE--
T ss_pred             cEEEEEEeccCCCEEEEEEEEC----CCCcEEEEEEEecCc--cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEE--
Confidence            466655554  78999999863    235566666653221  11233446667788889999998877655433333  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc--E
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ--V  368 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~--v  368 (1092)
                                    ++||||+|++|.+++...+ .++..+++.|++||+.||.|||++||+||||||+|||++.++.  +
T Consensus        93 --------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~  157 (361)
T 3uc3_A           93 --------------IIMEYASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRL  157 (361)
T ss_dssp             --------------EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCE
T ss_pred             --------------EEEEeCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceE
Confidence                          3899999999999997665 4778799999999999999999999999999999999987765  9


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.....                                                                  
T Consensus       158 kl~Dfg~a~~~~~~------------------------------------------------------------------  171 (361)
T 3uc3_A          158 KICDFGYSKSSVLH------------------------------------------------------------------  171 (361)
T ss_dssp             EECCCCCC------------------------------------------------------------------------
T ss_pred             EEeecCcccccccc------------------------------------------------------------------
Confidence            99999988642200                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCcc-ccchhhhHHHHHHcC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTS-SNIYSLGVLFFELFG  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~-sDIwSLGvll~ell~  527 (1092)
                                                            ......+||++|+|||++.+..++.+ +|||||||+||||++
T Consensus       172 --------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~  213 (361)
T 3uc3_A          172 --------------------------------------SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLV  213 (361)
T ss_dssp             -----------------------------------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHh
Confidence                                                  00114579999999999998877655 999999999999998


Q ss_pred             C---CCcHHH---HHHHHH-hccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          528 R---FDSERA---LAAAMS-DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       528 ~---f~~~~~---~~~~~~-~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +   |.....   ....+. ........|.....++.+.+|+.+||++||.+|||+.|||+||||...
T Consensus       214 g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  281 (361)
T 3uc3_A          214 GAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPEIKTHSWFLKN  281 (361)
T ss_dssp             SSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTSHHHHTT
T ss_pred             CCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhCcchhcC
Confidence            6   443221   112222 222222233444568999999999999999999999999999999754

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.97  E-value=1.3e-32  Score=313.62  Aligned_cols=254  Identities=14%  Similarity=0.168  Sum_probs=180.1

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      .+..|.+.+.++  +.|.||++...    ..+..++.|++...... .......++..++...+|||++.++.....+..
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  107 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDT----VTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHR  107 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEET----TTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTE
T ss_pred             chhhEEEEEEEEecCCeEEEEEEEC----CCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCE
Confidence            444676666654  78999999642    12455666665332222 123344567778888999999988777554443


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc---
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL---  363 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~---  363 (1092)
                      .+                ++|||++| +|.+++.... .++..+++.|++||+.||+|||++||+||||||+|||++   
T Consensus       108 ~~----------------lv~e~~~~-~L~~~~~~~~-~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~  169 (329)
T 3gbz_A          108 LH----------------LIFEYAEN-DLKKYMDKNP-DVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSD  169 (329)
T ss_dssp             EE----------------EEEECCSE-EHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC--
T ss_pred             EE----------------EEEecCCC-CHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCC
Confidence            33                38999986 9999998765 477879999999999999999999999999999999994   


Q ss_pred             --cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          364 --QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       364 --~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                        ..+.+||+|||+++....+.                                                          
T Consensus       170 ~~~~~~~kl~Dfg~a~~~~~~~----------------------------------------------------------  191 (329)
T 3gbz_A          170 ASETPVLKIGDFGLARAFGIPI----------------------------------------------------------  191 (329)
T ss_dssp             ---CCEEEECCTTHHHHHC-------------------------------------------------------------
T ss_pred             CCccceEEECcCCCccccCCcc----------------------------------------------------------
Confidence              44569999999987643100                                                          


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGV  520 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGv  520 (1092)
                                                                   ...+..+||++|+|||++.+. .++.++|||||||
T Consensus       192 ---------------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~  226 (329)
T 3gbz_A          192 ---------------------------------------------RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIAC  226 (329)
T ss_dssp             -----------------------------------------------------CCTTCCHHHHTTCCCCCTHHHHHHHHH
T ss_pred             ---------------------------------------------cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHH
Confidence                                                         011245789999999999874 5899999999999


Q ss_pred             HHHHHcCC---CCcHHHHHHHHHhccccCCCCC--C-------------C-------------CCChhHHHHHHhccccC
Q 001366          521 LFFELFGR---FDSERALAAAMSDLRDRILPPS--F-------------L-------------SENPKEAGFCLWQLHPE  569 (1092)
Q Consensus       521 ll~ell~~---f~~~~~~~~~~~~~~~~~~p~~--~-------------~-------------~~~~~~~~li~~lL~~d  569 (1092)
                      +||||+++   |..................|+.  +             .             ..++.+.+|+.+||++|
T Consensus       227 il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  306 (329)
T 3gbz_A          227 IWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMD  306 (329)
T ss_dssp             HHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSS
T ss_pred             HHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCC
Confidence            99999985   5554443333333222111110  0             0             14677889999999999


Q ss_pred             CCCCCCHHHHhhhhhhhhh
Q 001366          570 PLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       570 P~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |.+|||+.|+|+||||...
T Consensus       307 P~~R~t~~e~l~hp~f~~~  325 (329)
T 3gbz_A          307 PVKRISAKNALEHPYFSHN  325 (329)
T ss_dssp             GGGSCCHHHHHTSGGGSSS
T ss_pred             hhhCCCHHHHhCCcccCCC
Confidence            9999999999999999864

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.97  E-value=4.1e-32  Score=301.76  Aligned_cols=255  Identities=19%  Similarity=0.151  Sum_probs=189.3

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.++  |.|.||++....    .+..++.|++....... ......++..++...+|||++.+++........+ 
T Consensus         7 ~y~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-   81 (284)
T 3kk8_A            7 NYDVKEELGKGAFSVVRRCVHKT----TGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHY-   81 (284)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE-
T ss_pred             hhhhhhhhcCcCCeEEEEEEEcC----CCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEE-
Confidence            355555444  789999996522    24556666654333222 2334446677788889999998777654333222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc--
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ--  367 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~--  367 (1092)
                                     .+|||++|++|.+++...+ .++..++..++.||+.||+|||++||+||||||+||+++.++.  
T Consensus        82 ---------------~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~  145 (284)
T 3kk8_A           82 ---------------LVFDLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGA  145 (284)
T ss_dssp             ---------------EEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTC
T ss_pred             ---------------EEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCC
Confidence                           3899999999999997664 4777799999999999999999999999999999999987665  


Q ss_pred             -EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          368 -VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       368 -vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                       +||+|||++......                                                                
T Consensus       146 ~~kl~Dfg~~~~~~~~----------------------------------------------------------------  161 (284)
T 3kk8_A          146 AVKLADFGLAIEVNDS----------------------------------------------------------------  161 (284)
T ss_dssp             CEEECCCTTCEECCSS----------------------------------------------------------------
T ss_pred             cEEEeeceeeEEcccC----------------------------------------------------------------
Confidence             999999988654310                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              .......||+.|+|||.+.+..++.++|||||||++|+|+
T Consensus       162 ----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~  201 (284)
T 3kk8_A          162 ----------------------------------------EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILL  201 (284)
T ss_dssp             ----------------------------------------CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHH
Confidence                                                    0011356899999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHH--HHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhccc
Q 001366          527 GR---FDSERALAAA--MSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       527 ~~---f~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                      ++   |.........  +.........+.+...++.+.+|+.+||++||.+|||+.|+|+||||.......
T Consensus       202 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~~  272 (284)
T 3kk8_A          202 VGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNRERVA  272 (284)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHHHHSCCCGG
T ss_pred             HCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhcCccccCChhHH
Confidence            86   4333322222  222222223344556789999999999999999999999999999998765443

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.97  E-value=2.9e-32  Score=310.51  Aligned_cols=253  Identities=19%  Similarity=0.179  Sum_probs=181.3

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC---chhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM---PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      ..|.+.+.++  |.|.||++...... ..+..++.|+......   ........++..++...+|||++.++.....+..
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGA-NTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSST-TTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccC-CCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            3466655554  78999998752111 1245556655432211   1122334456677888899999988776554333


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                ++|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||++.++
T Consensus        96 ~~----------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~  158 (327)
T 3a62_A           96 LY----------------LILEYLSGGELFMQLEREG-IFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQG  158 (327)
T ss_dssp             EE----------------EEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTS
T ss_pred             EE----------------EEEeCCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCC
Confidence            33                3899999999999997765 467779999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++......                                                               
T Consensus       159 ~~kl~Dfg~~~~~~~~~---------------------------------------------------------------  175 (327)
T 3a62_A          159 HVKLTDFGLCKESIHDG---------------------------------------------------------------  175 (327)
T ss_dssp             CEEECCCSCC----------------------------------------------------------------------
T ss_pred             cEEEEeCCcccccccCC---------------------------------------------------------------
Confidence            99999999886533100                                                               


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              ......+||++|+|||++.+..++.++|||||||+||||+
T Consensus       176 ----------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~  215 (327)
T 3a62_A          176 ----------------------------------------TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDML  215 (327)
T ss_dssp             -------------------------------------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHH
Confidence                                                    0011457899999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhcccc-CCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDR-ILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      ++   |............+... .+|   ...++.+.+||.+||.+||.+||     ++.++++||||...
T Consensus       216 ~g~~pf~~~~~~~~~~~i~~~~~~~p---~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~  283 (327)
T 3a62_A          216 TGAPPFTGENRKKTIDKILKCKLNLP---PYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHI  283 (327)
T ss_dssp             HSSCSCCCSSHHHHHHHHHHTCCCCC---TTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGGSSC
T ss_pred             HCCCCCCCCCHHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCcccCC
Confidence            85   55443333333333222 222   23478899999999999999999     88999999999764

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.97  E-value=3.8e-32  Score=327.23  Aligned_cols=250  Identities=16%  Similarity=0.161  Sum_probs=184.2

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.++  |.|+||++...    ..+..++.|+...... ........++..++....||||+.++.........+ 
T Consensus        38 ~y~~~~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~-  112 (494)
T 3lij_A           38 MYQRVKKLGSGAYGEVLLCRDK----VTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYY-  112 (494)
T ss_dssp             HEEEEEEEECC---EEEEEEET----TTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE-
T ss_pred             CeEEeeEEecCCCEEEEEEEEC----CCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE-
Confidence            455555554  78999999862    2345566665533221 222344556777888899999999877655333332 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC---C
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS---N  366 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~---~  366 (1092)
                                     ++||||.|++|.+++...+ .++..+++.|++||+.||.|||++||+||||||+|||++..   +
T Consensus       113 ---------------lv~e~~~~g~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~  176 (494)
T 3lij_A          113 ---------------LVMECYKGGELFDEIIHRM-KFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDA  176 (494)
T ss_dssp             ---------------EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTC
T ss_pred             ---------------EEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCC
Confidence                           3899999999999997664 47777999999999999999999999999999999999764   4


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++.....                                                                
T Consensus       177 ~~kl~DfG~a~~~~~~----------------------------------------------------------------  192 (494)
T 3lij_A          177 LIKIVDFGLSAVFENQ----------------------------------------------------------------  192 (494)
T ss_dssp             CEEECCCTTCEECBTT----------------------------------------------------------------
T ss_pred             cEEEEECCCCeECCCC----------------------------------------------------------------
Confidence            5999999998764310                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              ......+||++|+|||++. ..|+.++|||||||+||+|+
T Consensus       193 ----------------------------------------~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll  231 (494)
T 3lij_A          193 ----------------------------------------KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILL  231 (494)
T ss_dssp             ----------------------------------------BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHH
Confidence                                                    0112457999999999986 46999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccc--cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ++   |.+.............  ...++.+...++.+.+|+.+||++||.+|||+.++|+||||...
T Consensus       232 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~~  298 (494)
T 3lij_A          232 AGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKEM  298 (494)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHHH
T ss_pred             hCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcCcccccC
Confidence            86   5444333332222222  22334556778999999999999999999999999999999874

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.97  E-value=1.3e-32  Score=319.80  Aligned_cols=253  Identities=16%  Similarity=0.153  Sum_probs=187.0

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (1092)
                      .+..|.+.+.++  |.|.||++...+    .+..++.|+.....  .........++..++...+||||+.++.......
T Consensus        13 ~~~~y~i~~~LG~G~fG~V~~~~~~~----~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~   88 (384)
T 4fr4_A           13 NFDHFEILRAIGKGSFGKVCIVQKND----TKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEE   88 (384)
T ss_dssp             CGGGEEEEEEEECCTTCCEEEEEETT----TCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             ChHHeEEEEEEeeCCCeEEEEEEECC----CCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC
Confidence            455666666555  789999997632    34556666542211  1112234456677788889999998876655433


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                      ..+                .+|||+.||+|.+++...+ .++..+++.|+.||+.||.|||++||+||||||+||||+.+
T Consensus        89 ~~~----------------lv~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~  151 (384)
T 4fr4_A           89 DMF----------------MVVDLLLGGDLRYHLQQNV-HFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEH  151 (384)
T ss_dssp             EEE----------------EEECCCTTEEHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTT
T ss_pred             EEE----------------EEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCC
Confidence            333                3899999999999998754 57788999999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++.+...                                                               
T Consensus       152 g~vkL~DFG~a~~~~~~---------------------------------------------------------------  168 (384)
T 4fr4_A          152 GHVHITDFNIAAMLPRE---------------------------------------------------------------  168 (384)
T ss_dssp             SCEEECCCTTCEECCTT---------------------------------------------------------------
T ss_pred             CCEEEeccceeeeccCC---------------------------------------------------------------
Confidence            99999999998764310                                                               


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC---CCCCccccchhhhHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG---GVCTTSSNIYSLGVLF  522 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~---~~~t~~sDIwSLGvll  522 (1092)
                                                               ......+||++|+|||++.+   ..++.++|||||||+|
T Consensus       169 -----------------------------------------~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il  207 (384)
T 4fr4_A          169 -----------------------------------------TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTA  207 (384)
T ss_dssp             -----------------------------------------CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHH
T ss_pred             -----------------------------------------CceeccCCCccccCCeeeccCCCCCCCccceeechHHHH
Confidence                                                     01125679999999999974   4589999999999999


Q ss_pred             HHHcCC---CCc--HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-HHHHhhhhhhhhh
Q 001366          523 FELFGR---FDS--ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-TREILQSEVTNEF  588 (1092)
Q Consensus       523 ~ell~~---f~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-a~eiL~~~~~~~~  588 (1092)
                      |||+++   |..  ..........+.... ++.....++.+.+||.+||++||.+||+ +.+|++||||...
T Consensus       208 ~elltG~~Pf~~~~~~~~~~~~~~~~~~~-~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~hp~f~~~  278 (384)
T 4fr4_A          208 YELLRGRRPYHIRSSTSSKEIVHTFETTV-VTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQNFPYMNDI  278 (384)
T ss_dssp             HHHHHSSCSSCCCTTSCHHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHTSGGGTTC
T ss_pred             HHHHhCCCCCCCCCCccHHHHHHHHhhcc-cCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHcChhhhcC
Confidence            999986   432  111222222222111 1222345788999999999999999998 8999999999864

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.97  E-value=5.4e-32  Score=322.76  Aligned_cols=286  Identities=14%  Similarity=0.156  Sum_probs=179.2

Q ss_pred             HHHhhhcc--ccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.++  +.|+||++...    ..+..++.|+..... .........++..++...+||||+.+++.........  
T Consensus        55 y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~--  128 (458)
T 3rp9_A           55 YEIRHLIGTGSYGHVCEAYDK----LEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEK--  128 (458)
T ss_dssp             EEECCC-------CEEEEEEC----C--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTT--
T ss_pred             eEEeeEeeecCCeEEEEEEEC----CCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCccc--
Confidence            55555544  78999999652    235566666543222 2233445567888889999999999877654322111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                          ...     ..++|||+ +++|.++++..+ .++..+++.|+.||+.||+|||++||+||||||+||||+.++.+||
T Consensus       129 ----~~~-----~~lv~e~~-~~~L~~~~~~~~-~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl  197 (458)
T 3rp9_A          129 ----FDE-----LYVVLEIA-DSDFKKLFRTPV-YLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKV  197 (458)
T ss_dssp             ----CCC-----EEEEECCC-SEEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEE
T ss_pred             ----Cce-----EEEEEecc-ccchhhhcccCC-CCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEee
Confidence                001     11368876 579999997654 5788899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++............    ..                                         .. ......+.+++
T Consensus       198 ~DFGla~~~~~~~~~~~~~----~~-----------------------------------------~~-~~~~~~~~~~~  231 (458)
T 3rp9_A          198 CDFGLARTVDYPENGNSQL----PI-----------------------------------------SP-REDDMNLVTFP  231 (458)
T ss_dssp             CCCTTCBCTTSCTTCCCCC----C--------------------------------------------------------
T ss_pred             cccccchhccCcccccccc----cc-----------------------------------------Cc-ccccccccccc
Confidence            9999998765221100000    00                                         00 00000000000


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-CCCCCccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-GGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                      .                              .......++..+||+||+|||++. +..|+.++|||||||+||||+++ 
T Consensus       232 ~------------------------------~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~  281 (458)
T 3rp9_A          232 H------------------------------TKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMI  281 (458)
T ss_dssp             -------------------------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTS
T ss_pred             c------------------------------cccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhc
Confidence            0                              001122345789999999999864 56799999999999999999972 


Q ss_pred             -------------CCcHH--------------------HHHHH--HHhccc---------------------------cC
Q 001366          529 -------------FDSER--------------------ALAAA--MSDLRD---------------------------RI  546 (1092)
Q Consensus       529 -------------f~~~~--------------------~~~~~--~~~~~~---------------------------~~  546 (1092)
                                   |++..                    ...+.  +..+..                           ..
T Consensus       282 ~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (458)
T 3rp9_A          282 KENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTD  361 (458)
T ss_dssp             TTTCSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCC
T ss_pred             cccccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCC
Confidence                         32221                    01111  100000                           01


Q ss_pred             CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhccc
Q 001366          547 LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       547 ~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                      +...++..++.+.+||.+||.+||.+|||+.|+|+||||.+.....
T Consensus       362 ~~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~~~~~~  407 (458)
T 3rp9_A          362 LAERFPASSADAIHLLKRMLVFNPNKRITINECLAHPFFKEVRIAE  407 (458)
T ss_dssp             GGGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTCCGG
T ss_pred             HHHHCCCCCHHHHHHHHHHhccCccccCCHHHHhcCHhhhhcCCCc
Confidence            1123455688899999999999999999999999999999875544

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.97  E-value=8.2e-32  Score=323.68  Aligned_cols=251  Identities=16%  Similarity=0.192  Sum_probs=187.2

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.++  +.|+||++...    ..+..++.|+..... .........++..++...+||||+.++.........+ 
T Consensus        23 ~y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~-   97 (486)
T 3mwu_A           23 RYNIVCMLGKGSFGEVLKCKDR----ITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY-   97 (486)
T ss_dssp             HEEEEEEEECCSSSEEEEEEET----TTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE-
T ss_pred             ceEEeEEEeecCCEEEEEEEEC----CCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEE-
Confidence            355555554  78999999762    235566666652211 1223344556777888889999999877655433333 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc---cCC
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL---QSN  366 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~---~~~  366 (1092)
                                     ++||||.|++|.+++...+ .++..+++.|++||+.||.|||++||+||||||+|||++   ..+
T Consensus        98 ---------------lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~  161 (486)
T 3mwu_A           98 ---------------IVGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDC  161 (486)
T ss_dssp             ---------------EEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTC
T ss_pred             ---------------EEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCC
Confidence                           3899999999999997664 477889999999999999999999999999999999995   456


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++.....                                                                
T Consensus       162 ~~kl~Dfg~a~~~~~~----------------------------------------------------------------  177 (486)
T 3mwu_A          162 DIKIIDFGLSTCFQQN----------------------------------------------------------------  177 (486)
T ss_dssp             CEEECSCSCTTTBCCC----------------------------------------------------------------
T ss_pred             CEEEEECCcCeECCCC----------------------------------------------------------------
Confidence            7999999998754310                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              ......+||++|+|||++.+ .|+.++|||||||+||+|+
T Consensus       178 ----------------------------------------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll  216 (486)
T 3mwu_A          178 ----------------------------------------TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILL  216 (486)
T ss_dssp             --------------------------------------------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHH
Confidence                                                    01124579999999999986 5999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccc--cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ++   |.+.............  ....+.+...++.+.+||.+||++||.+|||+.++|+||||....
T Consensus       217 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~~~~~~  284 (486)
T 3mwu_A          217 SGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYS  284 (486)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHHHHHTC
T ss_pred             hCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHhhccCc
Confidence            85   5444333332222222  222344556788999999999999999999999999999998754

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.97  E-value=1.6e-32  Score=327.64  Aligned_cols=257  Identities=14%  Similarity=0.164  Sum_probs=179.9

Q ss_pred             hHHHhhhc--cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.+  +|.|+||++...    ..+..++.|+..... .........++..++...+||||+.+++......... 
T Consensus        63 ~y~~~~~lG~G~~g~V~~a~~~----~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~-  137 (464)
T 3ttj_A           63 RYQNLKPIGSGAQGIVCAAYDA----VLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLE-  137 (464)
T ss_dssp             TEEEEEEEEECSSCEEEEEEET----TTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTT-
T ss_pred             CeEEEEEeecCCCeEEEEEEEC----CCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccc-
Confidence            35555544  478999999652    235566666653322 2233445567778888999999998877654332211 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                          ...     ...++|||++|+ |.+.+..   .++..+++.|++||+.||+|||++||+||||||+||||+.++.+|
T Consensus       138 ----~~~-----~~~lv~E~~~~~-l~~~~~~---~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~k  204 (464)
T 3ttj_A          138 ----EFQ-----DVYLVMELMDAN-LCQVIQM---ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLK  204 (464)
T ss_dssp             ----TCC-----EEEEEEECCSEE-HHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEE
T ss_pred             ----cCC-----eEEEEEeCCCCC-HHHHHhh---cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEE
Confidence                000     012489999875 6666643   377889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++.....                                                                   
T Consensus       205 l~DFG~a~~~~~~-------------------------------------------------------------------  217 (464)
T 3ttj_A          205 ILDFGLARTAGTS-------------------------------------------------------------------  217 (464)
T ss_dssp             ECCCCCC-----C-------------------------------------------------------------------
T ss_pred             EEEEEeeeecCCC-------------------------------------------------------------------
Confidence            9999998764310                                                                   


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ...+..+||++|+|||++.+..|+.++|||||||+||||+++ 
T Consensus       218 -------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~  260 (464)
T 3ttj_A          218 -------------------------------------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK  260 (464)
T ss_dssp             -------------------------------------CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCC
Confidence                                                 011256899999999999999999999999999999999985 


Q ss_pred             --CCcHHHHHHHHHhccccCCC----------------------------CCCCC-----C-------ChhHHHHHHhcc
Q 001366          529 --FDSERALAAAMSDLRDRILP----------------------------PSFLS-----E-------NPKEAGFCLWQL  566 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p----------------------------~~~~~-----~-------~~~~~~li~~lL  566 (1092)
                        |.+.....++...+.....|                            ..++.     .       ++.+.+|+.+||
T Consensus       261 ~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL  340 (464)
T 3ttj_A          261 ILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKML  340 (464)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHc
Confidence              66554433332222110000                            00000     0       356789999999


Q ss_pred             ccCCCCCCCHHHHhhhhhhhhhhcc
Q 001366          567 HPEPLSRPTTREILQSEVTNEFQEV  591 (1092)
Q Consensus       567 ~~dP~~Rpsa~eiL~~~~~~~~~~~  591 (1092)
                      ++||.+|||++|+|+||||+.....
T Consensus       341 ~~dP~~R~ta~e~L~Hp~~~~~~~~  365 (464)
T 3ttj_A          341 VIDPAKRISVDDALQHPYINVWYDP  365 (464)
T ss_dssp             CSSTTTSCCHHHHHTSTTTGGGCCH
T ss_pred             CCChhhCCCHHHHhcChhhhhccCc
Confidence            9999999999999999999865443

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.97  E-value=8.2e-32  Score=300.30  Aligned_cols=250  Identities=17%  Similarity=0.159  Sum_probs=180.8

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+++.++  |.|.||++....    .+..++.|+..............++...+...+|||++.+++........+  
T Consensus        23 ~y~~~~~lg~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~--   96 (285)
T 3is5_A           23 LFIFKRKLGSGAFGDVHLVEERS----SGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMY--   96 (285)
T ss_dssp             HEEEEEEEEECSSCEEEEEEETT----TCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE--
T ss_pred             heeecceeccCCCeEEEEEEEcc----CCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEE--
Confidence            355555554  789999987522    244455555433333333345556777888889999998877654333222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE---cc
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL---LQ  364 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill---~~  364 (1092)
                                    ++|||++|++|.+++..   .+..++..+++.|+.||+.||+|||++||+||||||+||++   +.
T Consensus        97 --------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~  162 (285)
T 3is5_A           97 --------------IVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSP  162 (285)
T ss_dssp             --------------EEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSST
T ss_pred             --------------EEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCC
Confidence                          38999999999999954   34568888999999999999999999999999999999999   45


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      .+.+||+|||+++......                                                             
T Consensus       163 ~~~~kl~Dfg~a~~~~~~~-------------------------------------------------------------  181 (285)
T 3is5_A          163 HSPIKIIDFGLAELFKSDE-------------------------------------------------------------  181 (285)
T ss_dssp             TCCEEECCCCCCCC------------------------------------------------------------------
T ss_pred             CCCEEEEeeecceecCCcc-------------------------------------------------------------
Confidence            6789999999886543100                                                             


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~e  524 (1092)
                                                                 ......||+.|+|||.+. ..++.++|||||||+|||
T Consensus       182 -------------------------------------------~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~  217 (285)
T 3is5_A          182 -------------------------------------------HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYF  217 (285)
T ss_dssp             ------------------------------------------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHH
Confidence                                                       011456899999999986 578999999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHh-ccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          525 LFGR---FDSERALAAAMSD-LRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      |+++   |............ ......+......++.+.+|+.+||++||.+|||+.|+|+||||.+
T Consensus       218 ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~f~~  284 (285)
T 3is5_A          218 LLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHHEWFKQ  284 (285)
T ss_dssp             HHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGGC
T ss_pred             HHhCCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHhhc
Confidence            9985   4433222222211 1222233333446789999999999999999999999999999975

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.97  E-value=7.9e-32  Score=308.96  Aligned_cols=249  Identities=15%  Similarity=0.150  Sum_probs=180.4

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.++  +.|+||++...    ..+..++.|+..........    ....+.....||||+.+++....+...+  
T Consensus        23 ~y~~~~~lG~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~~~~----E~~~l~~~~~hp~iv~~~~~~~~~~~~~--   92 (342)
T 2qr7_A           23 GYEVKEDIGVGSYSVCKRCIHK----ATNMEFAVKIIDKSKRDPTE----EIEILLRYGQHPNIITLKDVYDDGKYVY--   92 (342)
T ss_dssp             HEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEETTTCCCHH----HHHHHHHHTTSTTBCCEEEEEECSSEEE--
T ss_pred             cEEEEEEEeeCCCEEEEEEEEC----CCCCEEEEEEEEcccCChHH----HHHHHHHhcCCCCcCeEEEEEEcCCEEE--
Confidence            455555544  68999999762    23556666665332222111    1122334458999998877655433333  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC----C
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS----N  366 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~----~  366 (1092)
                                    .+||||+||+|.+++...+ .+++.++..+++||+.||+|||++||+||||||+|||+...    +
T Consensus        93 --------------lv~E~~~gg~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~  157 (342)
T 2qr7_A           93 --------------VVTELMKGGELLDKILRQK-FFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPE  157 (342)
T ss_dssp             --------------EEECCCCSCBHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGG
T ss_pred             --------------EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcC
Confidence                          3899999999999997664 47888999999999999999999999999999999998543    3


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++......                                                               
T Consensus       158 ~~kl~Dfg~a~~~~~~~---------------------------------------------------------------  174 (342)
T 2qr7_A          158 SIRICDFGFAKQLRAEN---------------------------------------------------------------  174 (342)
T ss_dssp             GEEECCCTTCEECBCTT---------------------------------------------------------------
T ss_pred             eEEEEECCCcccCcCCC---------------------------------------------------------------
Confidence            59999999987644100                                                               


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              ......+||+.|+|||++.+..++.++|||||||+||||+
T Consensus       175 ----------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  214 (342)
T 2qr7_A          175 ----------------------------------------GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTML  214 (342)
T ss_dssp             ----------------------------------------CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHh
Confidence                                                    0011457899999999999888999999999999999999


Q ss_pred             CC---CCcH--HHHHHHHHhccccC---CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          527 GR---FDSE--RALAAAMSDLRDRI---LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       527 ~~---f~~~--~~~~~~~~~~~~~~---~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ++   |...  ......+..+....   .++.+...++.+.+|+.+||++||.+|||+.++|+||||....
T Consensus       215 ~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~~~~~~  285 (342)
T 2qr7_A          215 TGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHWD  285 (342)
T ss_dssp             HSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHTGG
T ss_pred             cCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCeecCcc
Confidence            86   4321  12222222222222   1223456788999999999999999999999999999997643

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.97  E-value=1.9e-32  Score=321.27  Aligned_cols=252  Identities=17%  Similarity=0.111  Sum_probs=186.5

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.+  +|.|.||++....    .+..++.|+......  ..+.....++..++...+||||+.++.....+...+
T Consensus        70 ~y~~~~~LG~G~fG~V~~~~~~~----~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~  145 (410)
T 3v8s_A           70 DYEVVKVIGRGAFGEVQLVRHKS----TRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLY  145 (410)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETT----TCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccEEEEEEEcCCCEEEEEEEECC----CCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEE
Confidence            34444444  4789999997632    245556655422110  111122334556677889999999877655443333


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+||||+||+|.++++..  .+++..++.|+.||+.||+|||++||+||||||+||||+.++.+
T Consensus       146 ----------------lV~E~~~gg~L~~~l~~~--~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~i  207 (410)
T 3v8s_A          146 ----------------MVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHL  207 (410)
T ss_dssp             ----------------EEECCCTTEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCE
T ss_pred             ----------------EEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCE
Confidence                            389999999999999764  47888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++......                                                                 
T Consensus       208 kL~DFG~a~~~~~~~-----------------------------------------------------------------  222 (410)
T 3v8s_A          208 KLADFGTCMKMNKEG-----------------------------------------------------------------  222 (410)
T ss_dssp             EECCCTTCEECCTTS-----------------------------------------------------------------
T ss_pred             EEeccceeEeeccCC-----------------------------------------------------------------
Confidence            999999987644100                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC----CCccccchhhhHHHHH
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV----CTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~----~t~~sDIwSLGvll~e  524 (1092)
                                                           .......+||+.|+|||++.+..    ++.++|||||||+|||
T Consensus       223 -------------------------------------~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilye  265 (410)
T 3v8s_A          223 -------------------------------------MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYE  265 (410)
T ss_dssp             -------------------------------------EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHH
T ss_pred             -------------------------------------cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHH
Confidence                                                 00012568999999999998755    8899999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhccc--cCCCCCCCCCChhHHHHHHhccccCCCC--CCCHHHHhhhhhhhhh
Q 001366          525 LFGR---FDSERALAAAMSDLRD--RILPPSFLSENPKEAGFCLWQLHPEPLS--RPTTREILQSEVTNEF  588 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~li~~lL~~dP~~--Rpsa~eiL~~~~~~~~  588 (1092)
                      |++|   |.+..........+..  ....|.....++.+.+||.+||..+|.+  ||++.||++||||...
T Consensus       266 ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f~~~  336 (410)
T 3v8s_A          266 MLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKND  336 (410)
T ss_dssp             HHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGGCCS
T ss_pred             HHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcCccccCC
Confidence            9985   5544433333333322  2233444567899999999999999988  9999999999999875

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.97  E-value=5.3e-32  Score=313.85  Aligned_cols=250  Identities=16%  Similarity=0.128  Sum_probs=181.4

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhh-hhccCCCCCCCccccceecCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAM-MVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      ..|.+.+.++  +.|.||++....    .+..++.|+........  ......++.. ++...+||||+.++........
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~----~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~  113 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKA----EEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADK  113 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETT----TCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSE
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcC----CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCE
Confidence            3455555554  689999997632    24555666553322211  1112222222 3567799999988766554433


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                .+|||++||+|.++|...+ .+++.+++.++.||+.||+|||++||+||||||+||||+.+|
T Consensus       114 ~~----------------lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g  176 (373)
T 2r5t_A          114 LY----------------FVLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQG  176 (373)
T ss_dssp             EE----------------EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS
T ss_pred             EE----------------EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCC
Confidence            33                3899999999999997764 467779999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++......                                                               
T Consensus       177 ~ikL~DFG~a~~~~~~~---------------------------------------------------------------  193 (373)
T 2r5t_A          177 HIVLTDFGLCKENIEHN---------------------------------------------------------------  193 (373)
T ss_dssp             CEEECCCCBCGGGBCCC---------------------------------------------------------------
T ss_pred             CEEEeeCccccccccCC---------------------------------------------------------------
Confidence            99999999987633100                                                               


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              ......+||+.|+|||++.+..++.++|||||||+||||+
T Consensus       194 ----------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  233 (373)
T 2r5t_A          194 ----------------------------------------STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEML  233 (373)
T ss_dssp             ----------------------------------------CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHH
Confidence                                                    0012568999999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccC-CCCCCCCCChhHHHHHHhccccCCCCCCCH----HHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRI-LPPSFLSENPKEAGFCLWQLHPEPLSRPTT----REILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa----~eiL~~~~~~~~  588 (1092)
                      ++   |............+.... +|   ...++.+.+||.+||++||.+||++    .+|++||||...
T Consensus       234 ~G~~Pf~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~~f~~~  300 (373)
T 2r5t_A          234 YGLPPFYSRNTAEMYDNILNKPLQLK---PNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLI  300 (373)
T ss_dssp             HSSCTTCCSBHHHHHHHHHHSCCCCC---SSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSGGGTTC
T ss_pred             cCCCCCCCCCHHHHHHHHHhcccCCC---CCCCHHHHHHHHHHcccCHHhCCCCCCCHHHHhCCccccCC
Confidence            86   544433333333333221 22   2357889999999999999999997    699999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.1e-30  Score=291.15  Aligned_cols=255  Identities=20%  Similarity=0.234  Sum_probs=211.9

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecC-CCCEEEEEECCCc
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNY-IKNYLASADYDGV  852 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-~~~~LaSgs~Dgt  852 (1092)
                      .+.+|...|++++|+|++++||+|+.|+.|+||++...     .........+|...|.+++|+++ .+.+|++|+.||+
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-----cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            35689999999999999999999999999999998631     12222345579999999999864 2789999999999


Q ss_pred             EEEEECCCCc--eEEEeeccCccEEEEEEecCC--CCEEEEEeCCCcEEEEecCCCceee--eE-ecCCceEEEEEccC-
Q 001366          853 VKLWDACTGQ--TVSHYIEHEKRAWSVDFSQVH--PTKLASGSDDCSVKLWNINEKNSLA--TI-KNIANVCCVQFSAH-  924 (1092)
Q Consensus       853 V~IWD~~tg~--~i~~l~~h~~~V~sv~fsp~~--~~~laSgs~Dg~I~iWDl~~~~~l~--~l-~~~~~V~sl~fsp~-  924 (1092)
                      |++||+.+++  .+..+..|...|++++|+| +  +.+|++++.|+.|++||++++....  .+ .+...|.+++|+|. 
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            9999999987  7778888999999999999 6  8899999999999999999874433  23 36788999999994 


Q ss_pred             ------------CCeEEEEEECCCeEEEEEcCCCCc---ceEEecCCCCCeEEEEEcC----CCEEEEEECCCeEEEEEc
Q 001366          925 ------------SSHLLAFGSADYRTYCYDLRNARA---PWCVLAGHEKAVSYVKFLD----SGTLVTASTDNKLKLWDL  985 (1092)
Q Consensus       925 ------------~~~~latgs~Dg~I~vwDlr~~~~---~~~~l~~H~~~V~~v~fs~----~~~L~Sgs~Dg~I~vWDl  985 (1092)
                                  + .+|++|+.|+.|++||+++...   ....+.+|...|.+++|++    +.+|++++.||.|++||+
T Consensus       160 ~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          160 IEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             ----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             ccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence                        5 5999999999999999987653   3456789999999999994    578999999999999999


Q ss_pred             CCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCC
Q 001366          986 KRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLP 1038 (1092)
Q Consensus       986 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~ 1038 (1092)
                      +.....   ..........|...|++++|+|++.+|++++.||.|++|++...
T Consensus       239 ~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          239 DNEQGP---WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             SSTTSC---CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CCCCcc---ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            853211   01122223348889999999999999999999999999998743

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.97  E-value=5e-32  Score=311.21  Aligned_cols=270  Identities=13%  Similarity=0.097  Sum_probs=190.6

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      +..|.+.+.++  |.|.||++...    ..+..++.|+........ ......++..++...+|||++.+++........
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   91 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHR----KTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASP   91 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEET----TTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC---
T ss_pred             ccceeEEEEEecCCCcEEEEEEEC----CCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccc
Confidence            34566666555  78999999762    225566666553333222 233445677788888999999887765543221


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      +. ...+.       ..++||||+| +|.+++......++..+++.|+.||+.||+|||++||+||||||+|||++.++.
T Consensus        92 ~~-~~~~~-------~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~  162 (351)
T 3mi9_A           92 YN-RCKGS-------IYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGV  162 (351)
T ss_dssp             ------CE-------EEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSC
T ss_pred             cc-cCCce-------EEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCC
Confidence            10 00011       1248999986 888888776667889899999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||+++.+......                                                              
T Consensus       163 ~kl~Dfg~a~~~~~~~~~--------------------------------------------------------------  180 (351)
T 3mi9_A          163 LKLADFGLARAFSLAKNS--------------------------------------------------------------  180 (351)
T ss_dssp             EEECCCTTCEECCCCSSS--------------------------------------------------------------
T ss_pred             EEEccchhcccccccccc--------------------------------------------------------------
Confidence            999999999765411000                                                              


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHc
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell  526 (1092)
                                                           ........+||++|+|||++.+ ..++.++|||||||+||||+
T Consensus       181 -------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell  223 (351)
T 3mi9_A          181 -------------------------------------QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMW  223 (351)
T ss_dssp             -------------------------------------SCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------cccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHH
Confidence                                                 0011225678999999999987 56899999999999999999


Q ss_pred             CC---CCcHHH--HHHHHHhccccCCCCCCCC----------------------------CChhHHHHHHhccccCCCCC
Q 001366          527 GR---FDSERA--LAAAMSDLRDRILPPSFLS----------------------------ENPKEAGFCLWQLHPEPLSR  573 (1092)
Q Consensus       527 ~~---f~~~~~--~~~~~~~~~~~~~p~~~~~----------------------------~~~~~~~li~~lL~~dP~~R  573 (1092)
                      ++   |.+...  ....+........+..+..                            .++.+.+|+.+||++||.+|
T Consensus       224 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  303 (351)
T 3mi9_A          224 TRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQR  303 (351)
T ss_dssp             HSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGS
T ss_pred             hCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhC
Confidence            86   444332  2222333333222222221                            15678899999999999999


Q ss_pred             CCHHHHhhhhhhhhhhccc
Q 001366          574 PTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       574 psa~eiL~~~~~~~~~~~~  592 (1092)
                      ||+.|+|+||||.....+.
T Consensus       304 ~t~~e~l~hp~f~~~~~~~  322 (351)
T 3mi9_A          304 IDSDDALNHDFFWSDPMPS  322 (351)
T ss_dssp             CCHHHHHTSGGGGSSSCCC
T ss_pred             CCHHHHhCCCCcCCCCCcc
Confidence            9999999999998755443

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.97  E-value=3.2e-32  Score=319.51  Aligned_cols=253  Identities=15%  Similarity=0.092  Sum_probs=184.9

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.+  +|.|.||++...    ..++.++.|+.......  .......++..++....||+++.++.....+...+
T Consensus        62 ~f~~~~~lG~G~fG~V~~~~~~----~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~  137 (412)
T 2vd5_A           62 DFEILKVIGRGAFSEVAVVKMK----QTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLY  137 (412)
T ss_dssp             GEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEE
T ss_pred             hEEEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEE
Confidence            34444444  378999999863    23556666665221111  11112334455667779999998877665444333


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      ++|||+.||+|.++|...+..+++..++.|+.||+.||+|||++||+||||||+||||+.++.+
T Consensus       138 ----------------lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~v  201 (412)
T 2vd5_A          138 ----------------LVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHI  201 (412)
T ss_dssp             ----------------EEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCE
T ss_pred             ----------------EEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCE
Confidence                            3899999999999998776678888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++......                                                                 
T Consensus       202 kL~DFGla~~~~~~~-----------------------------------------------------------------  216 (412)
T 2vd5_A          202 RLADFGSCLKLRADG-----------------------------------------------------------------  216 (412)
T ss_dssp             EECCCTTCEECCTTS-----------------------------------------------------------------
T ss_pred             EEeechhheeccCCC-----------------------------------------------------------------
Confidence            999999987644100                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-------CCCCCccccchhhhHH
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-------GGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-------~~~~t~~sDIwSLGvl  521 (1092)
                                                           .......+||+.|+|||++.       +..|+.++|||||||+
T Consensus       217 -------------------------------------~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvi  259 (412)
T 2vd5_A          217 -------------------------------------TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVF  259 (412)
T ss_dssp             -------------------------------------CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHH
T ss_pred             -------------------------------------ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHH
Confidence                                                 00011458999999999997       3578999999999999


Q ss_pred             HHHHcCC---CCcHHHHHHHHHhcc---ccCCCCCCCCCChhHHHHHHhccccCCCCC---CCHHHHhhhhhhhhh
Q 001366          522 FFELFGR---FDSERALAAAMSDLR---DRILPPSFLSENPKEAGFCLWQLHPEPLSR---PTTREILQSEVTNEF  588 (1092)
Q Consensus       522 l~ell~~---f~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~li~~lL~~dP~~R---psa~eiL~~~~~~~~  588 (1092)
                      ||||++|   |............+.   ...+|......++++.+||.+||+ +|.+|   |+++||++||||...
T Consensus       260 lyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~~i  334 (412)
T 2vd5_A          260 AYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHPFFFGL  334 (412)
T ss_dssp             HHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGGTTC
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCcCCC
Confidence            9999986   554443333322222   122343334568899999999999 99998   599999999999875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.8e-29  Score=283.36  Aligned_cols=261  Identities=16%  Similarity=0.203  Sum_probs=209.9

Q ss_pred             eeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCC----ceEEEeeccCccEEEEEEecC-CCCEEEEEeCCCcEE
Q 001366          823 VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTG----QTVSHYIEHEKRAWSVDFSQV-HPTKLASGSDDCSVK  897 (1092)
Q Consensus       823 ~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg----~~i~~l~~h~~~V~sv~fsp~-~~~~laSgs~Dg~I~  897 (1092)
                      ...+|...|++++|+|+ +.+|++|+.||+|+|||+.++    +.+..+.+|...|++++|+|. ++.+|++|+.|++|+
T Consensus         6 ~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             EECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             cCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            45679999999999998 899999999999999999876    467788899999999999985 488999999999999


Q ss_pred             EEecCCC---------ceeeeEe-cCCceEEEEEccC--CCeEEEEEECCCeEEEEEcCCCCcceE------------Ee
Q 001366          898 LWNINEK---------NSLATIK-NIANVCCVQFSAH--SSHLLAFGSADYRTYCYDLRNARAPWC------------VL  953 (1092)
Q Consensus       898 iWDl~~~---------~~l~~l~-~~~~V~sl~fsp~--~~~~latgs~Dg~I~vwDlr~~~~~~~------------~l  953 (1092)
                      +||++++         +.+..+. +...|.+++|+|+  + .+|++++.|+.|++||+++.+....            ..
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            9999987         3455554 6788999999998  7 4899999999999999987653211            11


Q ss_pred             cCCCCCeEEEEEcC----CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCC----CEEEEEe
Q 001366          954 AGHEKAVSYVKFLD----SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTAD----GYIACGS 1025 (1092)
Q Consensus       954 ~~H~~~V~~v~fs~----~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg----~~lasgs 1025 (1092)
                      .+|...+.++.|++    +..|++++.|+.+.+|+....      ....+..+.+|...|++++|+|++    .+|++|+
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG------KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS------CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC------ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence            26888999999984    678999999999988887632      123467788999999999999998    7999999


Q ss_pred             cCCcEEEEeCCCCCceeeeecccc------------------------------CC--CCCccccCCCCCCEEEEEEeCC
Q 001366         1026 ESNEVYAYHRSLPMPITSYKFGSI------------------------------DP--ISGKETDDDNGLFVSSVCWRRR 1073 (1092)
Q Consensus      1026 ~Dg~I~Iwd~~~~~~i~~~~~~~~------------------------------~~--i~~~~~~~~h~~~V~sva~spd 1073 (1092)
                      .|+.|++||+..+...........                              +.  ........+|...|++++|+|+
T Consensus       238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  317 (351)
T 3f3f_A          238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT  317 (351)
T ss_dssp             TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred             CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence            999999999876532211100000                              00  0011234578899999999999


Q ss_pred             CCEEEEEecCCeEEEEEc
Q 001366         1074 SDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1074 ~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +.+|++|+.||.|+||++
T Consensus       318 ~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          318 GTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             SCCEEEEETTSCEEEEEE
T ss_pred             CCEEEEecCCCcEEEEec
Confidence            999999999999999986

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.97  E-value=2.5e-32  Score=316.24  Aligned_cols=257  Identities=16%  Similarity=0.214  Sum_probs=173.2

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.++  +.|+||+|...    ..+..++.|+.... ..........++..++...+|||++.+++.........  
T Consensus        31 y~~~~~lG~G~~g~V~~a~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~--  104 (367)
T 2fst_X           31 YQNLSPVGSGAYGSVCAAFDT----KTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE--  104 (367)
T ss_dssp             EEEEEECC----CCEEEEEET----TTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGG--
T ss_pred             eEEeeEEeecCCeEEEEEEEC----CCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccc--
Confidence            44444444  68999999642    22556666655332 22233455667788888999999998776644221111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                         ..     ....++|+++ |++|.++++..  .++..+++.++.||+.||+|||++||+||||||+|||++.++.+||
T Consensus       105 ---~~-----~~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL  173 (367)
T 2fst_X          105 ---EF-----NDVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKI  173 (367)
T ss_dssp             ---GC-----CCCEEEEECC-CEECC-----C--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEE
T ss_pred             ---cC-----CeEEEEeccc-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEE
Confidence               00     1112356666 89999999763  5888899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++....                                                                     
T Consensus       174 ~DFG~a~~~~~---------------------------------------------------------------------  184 (367)
T 2fst_X          174 LDFGLARHTAD---------------------------------------------------------------------  184 (367)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             eeccccccccc---------------------------------------------------------------------
Confidence            99998865331                                                                     


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ..+..+||++|+|||++.+ ..++.++|||||||+||||+++ 
T Consensus       185 -------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~  227 (367)
T 2fst_X          185 -------------------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR  227 (367)
T ss_dssp             -------------------------------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCC
Confidence                                                 0114578999999999987 6789999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhcccc------------------------CCC-----CCCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          529 --FDSERALAAAMSDLRDR------------------------ILP-----PSFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~------------------------~~p-----~~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                        |.+.....+....+...                        ..+     ..+...++.+.+||.+||++||.+|||+.
T Consensus       228 ~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~  307 (367)
T 2fst_X          228 TLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA  307 (367)
T ss_dssp             CSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHH
Confidence              65544333222211100                        001     11345678899999999999999999999


Q ss_pred             HHhhhhhhhhhhccch
Q 001366          578 EILQSEVTNEFQEVCA  593 (1092)
Q Consensus       578 eiL~~~~~~~~~~~~~  593 (1092)
                      |+|+||||.....+..
T Consensus       308 e~L~hp~~~~~~~~~~  323 (367)
T 2fst_X          308 QALAHAYFAQYHDPDD  323 (367)
T ss_dssp             HHHTSGGGTTTCCGGG
T ss_pred             HHhcChhhhhccCCCC
Confidence            9999999998765544

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.97  E-value=1.1e-31  Score=324.11  Aligned_cols=280  Identities=16%  Similarity=0.143  Sum_probs=198.5

Q ss_pred             cccccccCCcCCccccCcceeeecccCCchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc-------
Q 001366          183 SANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-------  253 (1092)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-------  253 (1092)
                      +.+.|+.--.+-.++.+.+..+... .-...|.+.+.++  |.|.||++....    .+..++.|+.......       
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~Y~~~~~lG~G~~g~V~~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~   82 (504)
T 3q5i_A            8 SSGRENLYFQGIAINPGMYVRKKEG-KIGESYFKVRKLGSGAYGEVLLCKEKN----GHSEKAIKVIKKSQFDKGRYSDD   82 (504)
T ss_dssp             --CGGGGSSCCCCCCGGGGCCEECS-CGGGTEEEEEEEEC--CEEEEEEEETT----TCCEEEEEEEEC-----------
T ss_pred             ccccccccccceeechhheeeccCC-CcccceEEEeEecccCCeEEEEEEECC----CCcEEEEEEEEhhhccccccccc
Confidence            3444555555555555555443221 1123466665554  789999998632    2455566554322211       


Q ss_pred             -----hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCH
Q 001366          254 -----SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKR  328 (1092)
Q Consensus       254 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~  328 (1092)
                           .......++..++...+||||+.+++........+                ++||||+|++|.+++...+ .+++
T Consensus        83 ~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~----------------lv~e~~~gg~L~~~l~~~~-~~~~  145 (504)
T 3q5i_A           83 NKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFY----------------LVTEFYEGGELFEQIINRH-KFDE  145 (504)
T ss_dssp             -----CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE----------------EEEECCTTCBHHHHHHHHS-CCCH
T ss_pred             chhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEE----------------EEEecCCCCcHHHHHHHcC-CCCH
Confidence                 12234456677788889999999877755433333                3899999999999997664 4788


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC---cEEEecccccccccccccCCCCCCchhhhhccccccccc
Q 001366          329 IECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN---QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMF  405 (1092)
Q Consensus       329 ~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~---~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  405 (1092)
                      .+++.|++||+.||.|||++||+||||||+|||++..+   .+||+|||+++.....                       
T Consensus       146 ~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~-----------------------  202 (504)
T 3q5i_A          146 CDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKD-----------------------  202 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTT-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCC-----------------------
Confidence            89999999999999999999999999999999998776   6999999998764310                       


Q ss_pred             cccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCccccccccc
Q 001366          406 TTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQ  485 (1092)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (1092)
                                                                                                      
T Consensus       203 --------------------------------------------------------------------------------  202 (504)
T 3q5i_A          203 --------------------------------------------------------------------------------  202 (504)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHHHHHhccccC--CCCCCCCCChhHHH
Q 001366          486 STSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRI--LPPSFLSENPKEAG  560 (1092)
Q Consensus       486 ~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~  560 (1092)
                       ......+||++|+|||++.+ .++.++|||||||++|+|+++   |.+...............  ..+.+...++.+.+
T Consensus       203 -~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  280 (504)
T 3q5i_A          203 -YKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKE  280 (504)
T ss_dssp             -SCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHH
T ss_pred             -CccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCCCCHHHHH
Confidence             00124579999999999874 699999999999999999985   544433333322222222  12334567899999


Q ss_pred             HHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          561 FCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       561 li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      |+.+||++||.+|||+.|+|+||||....
T Consensus       281 li~~~L~~dp~~R~t~~e~l~h~~~~~~~  309 (504)
T 3q5i_A          281 LIKLMLTYDYNKRCTAEEALNSRWIKKYA  309 (504)
T ss_dssp             HHHHHTCSSTTTSCCHHHHHTSHHHHHTC
T ss_pred             HHHHHcCCChhHCCCHHHHhcCHhhhhch
Confidence            99999999999999999999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.3e-29  Score=284.07  Aligned_cols=288  Identities=14%  Similarity=0.129  Sum_probs=240.5

Q ss_pred             hhhhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSK  801 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~  801 (1092)
                      ..+.+|.+.+..+.+    +|++  .+++..|+.+++|+....+...     .+.+|...|.+++|+|++++|++++.|+
T Consensus        26 ~~l~~h~~~v~~~~~----s~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~~~dg   96 (369)
T 3zwl_B           26 IKLTGHERPLTQVKY----NKEGDLLFSCSKDSSASVWYSLNGERLG-----TLDGHTGTIWSIDVDCFTKYCVTGSADY   96 (369)
T ss_dssp             EEEECCSSCEEEEEE----CTTSCEEEEEESSSCEEEEETTTCCEEE-----EECCCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             EEEEEeeceEEEEEE----cCCCCEEEEEeCCCEEEEEeCCCchhhh-----hhhhcCCcEEEEEEcCCCCEEEEEeCCC
Confidence            446778777766543    4544  3467789999999988765544     3558999999999999999999999999


Q ss_pred             cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC-----CcEEEEECCCCc-----------eEE
Q 001366          802 KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD-----GVVKLWDACTGQ-----------TVS  865 (1092)
Q Consensus       802 ~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D-----gtV~IWD~~tg~-----------~i~  865 (1092)
                      +|+|||+...        .......+...|.+++|+|+ +.+|++++.+     |.|++||+.++.           .+.
T Consensus        97 ~i~iwd~~~~--------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~  167 (369)
T 3zwl_B           97 SIKLWDVSNG--------QCVATWKSPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH  167 (369)
T ss_dssp             EEEEEETTTC--------CEEEEEECSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred             eEEEEECCCC--------cEEEEeecCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence            9999998752        12223347889999999998 8999999999     999999987653           344


Q ss_pred             EeeccCc--cEEEEEEecCCCCEEEEEeCCCcEEEEecCC-CceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEE
Q 001366          866 HYIEHEK--RAWSVDFSQVHPTKLASGSDDCSVKLWNINE-KNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCY  941 (1092)
Q Consensus       866 ~l~~h~~--~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~-~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vw  941 (1092)
                      .+..|..  .+.+++|+| ++..|++++.|+.|++||+++ +..+..+. +...|.+++|+|++. +|++++.|+.|++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~  245 (369)
T 3zwl_B          168 KIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLV  245 (369)
T ss_dssp             EEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             eccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEE
Confidence            5556666  899999999 889999999999999999998 67777777 678899999999985 89999999999999


Q ss_pred             EcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCC--------------eEEEEEcCCCCCCCCCCCceeEEEcCCC
Q 001366          942 DLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDN--------------KLKLWDLKRTSHTGPSTNACSLTFSGHT 1006 (1092)
Q Consensus       942 Dlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg--------------~I~vWDl~~~~~~~~~~~~~~~~l~~h~ 1006 (1092)
                      |+++.+. +..+. +...+.+++|+ ++.++++++.++              .|++||+.        ....+..+.+|.
T Consensus       246 d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~~~~  315 (369)
T 3zwl_B          246 DVSTLQV-LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI--------FEEEIGRVQGHF  315 (369)
T ss_dssp             ETTTCCE-EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT--------TCCEEEEEECCS
T ss_pred             ECCCCce-eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC--------CCcchhheeccc
Confidence            9998764 34444 77889999998 777899999888              89999998        456788899999


Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCce
Q 001366         1007 NEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPI 1041 (1092)
Q Consensus      1007 ~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i 1041 (1092)
                      ..|++++|+|++++|++|+.||.|+||++..+...
T Consensus       316 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          316 GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence            99999999999999999999999999998765443

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.97  E-value=2.4e-32  Score=326.23  Aligned_cols=249  Identities=19%  Similarity=0.213  Sum_probs=186.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.++  +.|.||+|...    ..+..++.|+.......  .......++...+...+||||+.+++........+
T Consensus        17 ~Y~l~~~LG~G~fg~V~~a~~~----~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~   92 (476)
T 2y94_A           17 HYILGDTLGVGTFGKVKVGKHE----LTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIF   92 (476)
T ss_dssp             TEEEEEEEECCSSSCEEEEEET----TTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             CEEEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            355555544  68999999752    23566677665322111  11233456677788889999999877655433333


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+||||+|++|.++|...+ .++..+++.++.||+.||+|||++||+||||||+|||++.++.+
T Consensus        93 ----------------lv~E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~v  155 (476)
T 2y94_A           93 ----------------MVMEYVSGGELFDYICKNG-RLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNA  155 (476)
T ss_dssp             ----------------EEEECCSSEEHHHHTTSSS-SCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCE
T ss_pred             ----------------EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCe
Confidence                            3899999999999997654 47888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.....                                                                  
T Consensus       156 kL~DFG~a~~~~~~------------------------------------------------------------------  169 (476)
T 2y94_A          156 KIADFGLSNMMSDG------------------------------------------------------------------  169 (476)
T ss_dssp             EECCCSSCEECCTT------------------------------------------------------------------
T ss_pred             EEEeccchhhcccc------------------------------------------------------------------
Confidence            99999998764310                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHHHHHHcC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvll~ell~  527 (1092)
                                                            ......+||++|+|||++.+..+ +.++|||||||+||||++
T Consensus       170 --------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~ellt  211 (476)
T 2y94_A          170 --------------------------------------EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLC  211 (476)
T ss_dssp             --------------------------------------CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhh
Confidence                                                  00114579999999999998765 789999999999999998


Q ss_pred             C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          528 R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +   |......... ..+..... ......++.+.+||.+||+.||.+|||+.||++||||...
T Consensus       212 G~~Pf~~~~~~~~~-~~i~~~~~-~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~hp~~~~~  273 (476)
T 2y94_A          212 GTLPFDDDHVPTLF-KKICDGIF-YTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQD  273 (476)
T ss_dssp             SSCSSCCSSSHHHH-HHHHTTCC-CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHTT
T ss_pred             CCCCCCCCCHHHHH-HHHhcCCc-CCCccCCHHHHHHHHHHcCCCchhCcCHHHHHhCHHhhhc
Confidence            6   5443322222 22222221 1122357889999999999999999999999999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=2.7e-29  Score=290.30  Aligned_cols=328  Identities=16%  Similarity=0.152  Sum_probs=229.4

Q ss_pred             hhhhccchhhhhhccccccCC-CC--cEEeEcCCeEEEEEcccceEEeeEEe--------eeecCCCCCEEEEEEcC-CC
Q 001366          724 DLLRDRENLFLAQQDQEIQNP-TD--RLGAFFDGLCKYARYSKFEVQGMLRT--------GEFNNSANVICSISFDR-DE  791 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~-~~--~l~~~~D~~~k~w~~~~~~~~~~l~~--------~~l~~h~~~V~sl~fsp-dg  791 (1092)
                      .++++|.+.+..+.+    +| ++  .++++.|+.+++|++........+..        ....+|...|.+++|+| ++
T Consensus        37 ~~~~~h~~~v~~~~~----s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           37 DVERIHGGGINTLDI----EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             EECCCCSSCEEEEEE----CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             eeeeccCCcEEEEEE----ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            345567766665543    44 33  45778899999999876544333321        11235999999999999 78


Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCC--CCEEEEEECCCcEEEEECCCCceEEEeec
Q 001366          792 DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI--KNYLASADYDGVVKLWDACTGQTVSHYIE  869 (1092)
Q Consensus       792 ~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~LaSgs~DgtV~IWD~~tg~~i~~l~~  869 (1092)
                      .+|++|+.|+.|++||+...        .......+...+.+++|++..  +.++++++.||.|++||+.+++.+..+.+
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  184 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTL--------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG  184 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTT--------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred             cEEEEEeCCCeEEEeeCCCC--------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence            89999999999999998751        122334578889999999862  44999999999999999999999999999


Q ss_pred             cCccEEEEEEecCCCC-EEEEEeCCCcEEEEecCCCc-eeeeE----------------ecCCceEEEEEccCCCeEEEE
Q 001366          870 HEKRAWSVDFSQVHPT-KLASGSDDCSVKLWNINEKN-SLATI----------------KNIANVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       870 h~~~V~sv~fsp~~~~-~laSgs~Dg~I~iWDl~~~~-~l~~l----------------~~~~~V~sl~fsp~~~~~lat  931 (1092)
                      |...|.+++|+| ++. +|++|+.||.|++||++++. ++..+                .+...|.+++|+|++. +|++
T Consensus       185 ~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  262 (408)
T 4a11_B          185 HRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLT  262 (408)
T ss_dssp             CCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEE
T ss_pred             CCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEE
Confidence            999999999999 555 79999999999999998765 33333                2567899999999985 8999


Q ss_pred             EECCCeEEEEEcCCCCcceEEecCC------CCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCC
Q 001366          932 GSADYRTYCYDLRNARAPWCVLAGH------EKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~~~~~~l~~H------~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h 1005 (1092)
                      ++.|+.|++||+++++.... ..++      ......+.......+++++.|+.|++||+.        .+.++..+.+|
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~--------~~~~~~~~~~~  333 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLV-NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY--------SGEQITMLKGH  333 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCC-CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT--------TCCEEEEECCC
T ss_pred             ecCCCeEEEEECCCCcccee-ccccccccccccceeEEecCCCceEEEEecCCEEEEEECc--------CCcceeeeccC
Confidence            99999999999998764321 1111      111222222356678888899999999998        45678899999


Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC-CCCEEEEEecCC
Q 001366         1006 TNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR-RSDMVVAANSSG 1084 (1092)
Q Consensus      1006 ~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp-d~~~Lasgs~DG 1084 (1092)
                      ...|++++|+|++.+|++|+.||.|++|++..++++......                 -....+.+ ....+.+++.++
T Consensus       334 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~  396 (408)
T 4a11_B          334 YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------------TTKSQLNPAFEDAWSSSDEEG  396 (408)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------------------
T ss_pred             CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------------EeccccccccceeecccCccC
Confidence            999999999999999999999999999999988776544310                 11122233 344556778899


Q ss_pred             eEEEEEc
Q 001366         1085 CIKVLQM 1091 (1092)
Q Consensus      1085 ~V~vW~l 1091 (1092)
                      .+++|+.
T Consensus       397 ~~~~W~~  403 (408)
T 4a11_B          397 GTSAWSH  403 (408)
T ss_dssp             -------
T ss_pred             ceeecCC
Confidence            9999974

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.97  E-value=8.8e-32  Score=298.75  Aligned_cols=246  Identities=15%  Similarity=0.090  Sum_probs=177.6

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  288 (1092)
                      +|.+.+.+  ++.|.||++...    ..+..++.|+.... ..........++...+... .|||++.++.....+...+
T Consensus        12 ~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~   87 (289)
T 1x8b_A           12 EFHELEKIGSGEFGSVFKCVKR----LDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHML   87 (289)
T ss_dssp             HEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEE
T ss_pred             hhhhhhhhcCCCceEEEEEEEc----CCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEE
Confidence            44444444  378999999763    22455666655332 2233344455555556666 9999998877655433333


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNAR---GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~---~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                                      ++|||++|++|.+++...   ...++..+++.|+.||+.||+|||++||+||||||+||+++.+
T Consensus        88 ----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~  151 (289)
T 1x8b_A           88 ----------------IQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRT  151 (289)
T ss_dssp             ----------------EEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC--
T ss_pred             ----------------EEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCC
Confidence                            389999999999999654   2457888999999999999999999999999999999999855


Q ss_pred             C-------------------cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccc
Q 001366          366 N-------------------QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRW  426 (1092)
Q Consensus       366 ~-------------------~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (1092)
                      +                   .+|++|||+++.....                                            
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~--------------------------------------------  187 (289)
T 1x8b_A          152 SIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSP--------------------------------------------  187 (289)
T ss_dssp             ------------------CCCEEECCCTTCEETTCS--------------------------------------------
T ss_pred             CCCcccccccccccccCCceEEEEcccccccccCCc--------------------------------------------
Confidence            4                   6788888876553210                                            


Q ss_pred             cccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC
Q 001366          427 WSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG  506 (1092)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~  506 (1092)
                                                                                     ....||+.|+|||++.+
T Consensus       188 ---------------------------------------------------------------~~~~gt~~y~aPE~~~~  204 (289)
T 1x8b_A          188 ---------------------------------------------------------------QVEEGDSRFLANEVLQE  204 (289)
T ss_dssp             ---------------------------------------------------------------CCCCCCGGGCCHHHHTT
T ss_pred             ---------------------------------------------------------------cccCCCccccChhHhcC
Confidence                                                                           02348899999999987


Q ss_pred             C-CCCccccchhhhHHHHHHcCCC--CcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          507 G-VCTTSSNIYSLGVLFFELFGRF--DSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       507 ~-~~t~~sDIwSLGvll~ell~~f--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      . .++.++|||||||++|||+++.  .......   ..+.....+......++.+.+|+.+||++||.+|||+.++|+||
T Consensus       205 ~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~  281 (289)
T 1x8b_A          205 NYTHLPKADIFALALTVVCAAGAEPLPRNGDQW---HEIRQGRLPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKHS  281 (289)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHH---HHHHTTCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTCT
T ss_pred             CCCCCchhhHHHHHHHHHHHhcCCCCCcchhHH---HHHHcCCCCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhhCh
Confidence            5 6678999999999999999862  2222221   22233334444445688999999999999999999999999999


Q ss_pred             hhhhh
Q 001366          584 VTNEF  588 (1092)
Q Consensus       584 ~~~~~  588 (1092)
                      ||...
T Consensus       282 ~~~~~  286 (289)
T 1x8b_A          282 VLLSA  286 (289)
T ss_dssp             TC---
T ss_pred             Hhhhh
Confidence            99764

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.97  E-value=4.8e-32  Score=306.25  Aligned_cols=252  Identities=13%  Similarity=0.127  Sum_probs=175.5

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhcc-CCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVAS-NASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..++.|.||++...    ..+..++.|++..... .......++...+.. .+|||++.+++....+...+         
T Consensus        22 g~G~~g~V~~~~~~----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~---------   87 (316)
T 2ac3_A           22 GEGAHARVQTCINL----ITSQEYAVKIIEKQPG-HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFY---------   87 (316)
T ss_dssp             CCCSSEEEEEEECS----SSCCEEEEEEEECCSS-CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE---------
T ss_pred             cCCceEEEEEEEEc----CCCcEEEEEEEeeCcc-hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEE---------
Confidence            44578999999752    2255667766533322 223344455555555 58999998877655433333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc---EEEeccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ---VKYIGPI  374 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~---vkl~Dfg  374 (1092)
                             ++|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||++.++.   +||+|||
T Consensus        88 -------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg  159 (316)
T 2ac3_A           88 -------LVFEKMRGGSILSHIHKRR-HFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFD  159 (316)
T ss_dssp             -------EEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTT
T ss_pred             -------EEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEcc
Confidence                   3899999999999997764 4778799999999999999999999999999999999998776   9999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++........                                                                     
T Consensus       160 ~~~~~~~~~~~---------------------------------------------------------------------  170 (316)
T 2ac3_A          160 LGSGIKLNGDC---------------------------------------------------------------------  170 (316)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             CccccccCCcc---------------------------------------------------------------------
Confidence            98764311000                                                                     


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----CCCCccccchhhhHHHHHHcCC-
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----GVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                 ...........+||+.|+|||++.+     ..++.++|||||||+||||+++ 
T Consensus       171 ---------------------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~  223 (316)
T 2ac3_A          171 ---------------------------SPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGY  223 (316)
T ss_dssp             --------------------------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSS
T ss_pred             ---------------------------ccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCC
Confidence                                       0000111224579999999999975     5689999999999999999986 


Q ss_pred             --CCcHH--------------HHHHHHHhccccC--CC-CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 --FDSER--------------ALAAAMSDLRDRI--LP-PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 --f~~~~--------------~~~~~~~~~~~~~--~p-~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                        |....              ........+....  +| +.+...++.+.+|+.+||++||.+|||+.|+|+||||...
T Consensus       224 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~  302 (316)
T 2ac3_A          224 PPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGC  302 (316)
T ss_dssp             CSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSTTCC--
T ss_pred             CCCcccccccccccccccchhHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcChhhcCC
Confidence              43211              0111222222221  12 1234567889999999999999999999999999999864

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.97  E-value=1.2e-31  Score=297.14  Aligned_cols=251  Identities=17%  Similarity=0.192  Sum_probs=185.2

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||++....    .+..++.|+..... ........++..++...+|||++.++.....+...+   
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~----~~~~~a~k~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~---   82 (277)
T 3f3z_A           11 YTLENTIGRGSWGEVKIAVQKG----TRIRRAAKKIPKYF-VEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIY---   82 (277)
T ss_dssp             EEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEEGGG-CSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE---
T ss_pred             EEeeeEEeecCCEEEEEEEeCC----CCcEEEEEeehhhc-cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEE---
Confidence            4454444  4789999997632    23344444432221 122344556677788889999998877654333222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE---ccCCcE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL---LQSNQV  368 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill---~~~~~v  368 (1092)
                                   ++|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+||++   +.++.+
T Consensus        83 -------------lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~  148 (277)
T 3f3z_A           83 -------------LVMELCTGGELFERVVHKR-VFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPL  148 (277)
T ss_dssp             -------------EEEECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCE
T ss_pred             -------------EEEeccCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcE
Confidence                         3899999999999997754 47788999999999999999999999999999999999   788999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||+++.....                                                                  
T Consensus       149 ~l~Dfg~~~~~~~~------------------------------------------------------------------  162 (277)
T 3f3z_A          149 KLIDFGLAARFKPG------------------------------------------------------------------  162 (277)
T ss_dssp             EECCCTTCEECCTT------------------------------------------------------------------
T ss_pred             EEEecccceeccCc------------------------------------------------------------------
Confidence            99999988664310                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                            .......||+.|+|||.+.+ .++.++|||||||++|||+++
T Consensus       163 --------------------------------------~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g  203 (277)
T 3f3z_A          163 --------------------------------------KMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCG  203 (277)
T ss_dssp             --------------------------------------SCBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------cchhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHC
Confidence                                                  00114468999999999876 489999999999999999985


Q ss_pred             ---CCcHHHHHHHHHhccccCCCC--CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhcc
Q 001366          529 ---FDSERALAAAMSDLRDRILPP--SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEV  591 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~  591 (1092)
                         |..................++  .+...++.+.+|+.+||++||.+|||+.++|+||||.+....
T Consensus       204 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~~~~~  271 (277)
T 3f3z_A          204 YPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQLSS  271 (277)
T ss_dssp             SCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHHHHCC
T ss_pred             CCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhccccc
Confidence               544333333333333222222  234568899999999999999999999999999999875443

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.97  E-value=1.1e-31  Score=300.45  Aligned_cols=276  Identities=21%  Similarity=0.223  Sum_probs=186.4

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC-
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL-  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  289 (1092)
                      .|.+.+.+  +|.|.||++...    ..+..++.|++..  .........++..++...+|||++.++........... 
T Consensus         7 ~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (303)
T 1zy4_A            7 DFEEIAVLGQGAFGQVVKARNA----LDSRYYAIKKIRH--TEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKP   80 (303)
T ss_dssp             HEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEE--EHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-
T ss_pred             cchhhheeccCCcEEEEEEEEc----CCCeEEEEEEEec--cHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhh
Confidence            34444444  478999999752    1245556665522  12223344566777888899999987665443211100 


Q ss_pred             -CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          290 -GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       290 -~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                       .....-     .....+|||++|++|.+++...+..++..+++.++.||+.||+|||++||+||||||+||+++.++.+
T Consensus        81 ~~~~~~~-----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~  155 (303)
T 1zy4_A           81 MTAVKKK-----STLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNV  155 (303)
T ss_dssp             -----CE-----EEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCE
T ss_pred             hcccccC-----CceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCE
Confidence             000000     01224899999999999998776677888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||+++............                                                           
T Consensus       156 kl~dfg~~~~~~~~~~~~~~~-----------------------------------------------------------  176 (303)
T 1zy4_A          156 KIGDFGLAKNVHRSLDILKLD-----------------------------------------------------------  176 (303)
T ss_dssp             EECCCCCCSCTTC-------------------------------------------------------------------
T ss_pred             EEeeCcchhhcccccchhccc-----------------------------------------------------------
Confidence            999999987654211000000                                                           


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~  527 (1092)
                                                    +..............||+.|+|||.+.+. .++.++|||||||++|||++
T Consensus       177 ------------------------------~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~  226 (303)
T 1zy4_A          177 ------------------------------SQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY  226 (303)
T ss_dssp             -----------------------------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------cccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh
Confidence                                          00000001122356799999999999874 68999999999999999999


Q ss_pred             CCCcHHHHHHHHHhcccc--CCCCCCC-CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          528 RFDSERALAAAMSDLRDR--ILPPSFL-SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       528 ~f~~~~~~~~~~~~~~~~--~~p~~~~-~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +|............+...  .+|+.+. ..++.+.+|+.+||++||.+|||+.++|+||||...
T Consensus       227 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  290 (303)
T 1zy4_A          227 PFSTGMERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWLPVK  290 (303)
T ss_dssp             CCSSHHHHHHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHSSCSCCC
T ss_pred             ccCCchhHHHHHHhccccccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCCCCcCCC
Confidence            987665555544444332  2344433 345668899999999999999999999999999653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.8e-31  Score=316.50  Aligned_cols=260  Identities=13%  Similarity=0.122  Sum_probs=202.1

Q ss_pred             CCCCCEEEEEEcCCC---------CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEE
Q 001366          777 NSANVICSISFDRDE---------DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASA  847 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg---------~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSg  847 (1092)
                      .+...|.+|+|+|++         ++||+|+.++..      .                        .++|+ +..|+++
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------~------------------------~~~~~-~~~laS~  179 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------E------------------------PLNEH-LEMFDKE  179 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------------
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecccC------C------------------------ccchh-hhhhccC
Confidence            357899999999987         799999866420      0                        12465 7889999


Q ss_pred             ECCCcEEEEECCCCce----EEEeeccCccEEEEEEecC-----CCCEEEEEeCCCcEEEEecCCCcee-----------
Q 001366          848 DYDGVVKLWDACTGQT----VSHYIEHEKRAWSVDFSQV-----HPTKLASGSDDCSVKLWNINEKNSL-----------  907 (1092)
Q Consensus       848 s~DgtV~IWD~~tg~~----i~~l~~h~~~V~sv~fsp~-----~~~~laSgs~Dg~I~iWDl~~~~~l-----------  907 (1092)
                      +.|++|+|||+.+++.    ...+..|...|++|+|+|.     ++.+||+|+.||+|+|||+.++...           
T Consensus       180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~  259 (524)
T 2j04_B          180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS  259 (524)
T ss_dssp             --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS
T ss_pred             CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce
Confidence            9999999999988764    2346678889999999993     2579999999999999999876432           


Q ss_pred             eeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEE--EEcC-C-CEEEEEECCCeEEE
Q 001366          908 ATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYV--KFLD-S-GTLVTASTDNKLKL  982 (1092)
Q Consensus       908 ~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v--~fs~-~-~~L~Sgs~Dg~I~v  982 (1092)
                      .++. +...|++++|+|++  .|++|+.||+|++||++++..+...+.+|...|.+|  .|++ + .+|+|||.|++|+|
T Consensus       260 ~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl  337 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI  337 (524)
T ss_dssp             EEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred             EEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence            2444 56789999999864  799999999999999998766677789999999999  4564 4 68999999999999


Q ss_pred             EEcCCCCCCCCCCCceeEEEcCCCC--CeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCC
Q 001366          983 WDLKRTSHTGPSTNACSLTFSGHTN--EKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDD 1060 (1092)
Q Consensus       983 WDl~~~~~~~~~~~~~~~~l~~h~~--~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~ 1060 (1092)
                      ||++        ...+..++.+|..  .|++++|+|++..+++++.|++|++||+..+..+..+              .+
T Consensus       338 WD~~--------~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l--------------~g  395 (524)
T 2j04_B          338 FNPK--------DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL--------------VS  395 (524)
T ss_dssp             ECGG--------GHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE--------------EE
T ss_pred             EECC--------CCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee--------------ec
Confidence            9998        3455566667654  4789999999999999999999999998877655433              35


Q ss_pred             CCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1061 NGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1061 h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |...|++|+|+|++++|++|+.||.|+||++
T Consensus       396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          396 RETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             CSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             CCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            7889999999999999999999999999985

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.97  E-value=5.7e-32  Score=336.80  Aligned_cols=252  Identities=16%  Similarity=0.168  Sum_probs=187.8

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccC-CCCCCCccccceecCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  285 (1092)
                      ...|.+.+.++  |.|.||++....    .++.+|.|+.....  ..........+..++... .||+++.++.......
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~----~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~  415 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKG----TDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD  415 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESS----SCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSS
T ss_pred             ccceEEEEEEccCCCEEEEEEEECC----CCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCC
Confidence            34455555554  789999998632    35556666653211  111222333444444443 7888887766544333


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                      ..+                ++|||++||+|.++|...+ .+++.+++.|+.||+.||+|||++||+||||||+||||+.+
T Consensus       416 ~~~----------------lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~  478 (674)
T 3pfq_A          416 RLY----------------FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSE  478 (674)
T ss_dssp             EEE----------------EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSS
T ss_pred             EEE----------------EEEeCcCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCC
Confidence            333                3899999999999998765 47787999999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++......                                                              
T Consensus       479 g~ikL~DFGla~~~~~~~--------------------------------------------------------------  496 (674)
T 3pfq_A          479 GHIKIADFGMCKENIWDG--------------------------------------------------------------  496 (674)
T ss_dssp             SCEEECCCTTCEECCCTT--------------------------------------------------------------
T ss_pred             CcEEEeecceeeccccCC--------------------------------------------------------------
Confidence            999999999987533100                                                              


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                                                               ......+||++|+|||++.+..|+.++|||||||+||||
T Consensus       497 -----------------------------------------~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyel  535 (674)
T 3pfq_A          497 -----------------------------------------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEM  535 (674)
T ss_dssp             -----------------------------------------CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHH
Confidence                                                     001256899999999999999999999999999999999


Q ss_pred             cCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCH-----HHHhhhhhhhhh
Q 001366          526 FGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTT-----REILQSEVTNEF  588 (1092)
Q Consensus       526 l~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa-----~eiL~~~~~~~~  588 (1092)
                      +++   |.+..........+......|  ...++++.+||.+||.+||.+||++     +||++||||...
T Consensus       536 ltG~~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~i  604 (674)
T 3pfq_A          536 LAGQAPFEGEDEDELFQSIMEHNVAYP--KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYI  604 (674)
T ss_dssp             HHSSCSSCCSSHHHHHHHHHSSCCCCC--TTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGGGSSC
T ss_pred             HcCCCCCCCCCHHHHHHHHHhCCCCCC--ccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCccccCC
Confidence            985   655544444444444333222  2458899999999999999999998     999999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.9e-29  Score=287.61  Aligned_cols=288  Identities=14%  Similarity=0.182  Sum_probs=216.4

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEE-EEEECCCcE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYL-ASADYDGVV  853 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~L-aSgs~DgtV  853 (1092)
                      +.+|...|++++|+|||++||+|+.+ .++||++...       .. ... .+...+..++|.++ ++.+ ++++.|++|
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~-------~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~d~~v   83 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPV-------AH-IMS-QEMRHLSKVRMLHR-TNYVAFVTGVKEVV   83 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSS-EEEEEEETTE-------EE-EEE-EECSCCCEEEECTT-SSEEEEECSSTTEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCc-------ce-eee-eecCCeEEEEEcCC-CCEEEEEECCccEE
Confidence            46799999999999999999999866 5889997641       11 111 11235788888887 4555 678888999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC-ceeeeEecCCceEEEEEccCCCeEEEE-
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK-NSLATIKNIANVCCVQFSAHSSHLLAF-  931 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~-~~l~~l~~~~~V~sl~fsp~~~~~lat-  931 (1092)
                      +|||+.+++.+..+. |...|.+++|++ +  .++++ .|+.|++||+.++ +.+.++..  ....+++++  . ++++ 
T Consensus        84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~-~la~~  153 (355)
T 3vu4_A           84 HIWDDVKKQDVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--G-LLVYS  153 (355)
T ss_dssp             EEEETTTTEEEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--T-EEEEE
T ss_pred             EEEECCCCcEEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--c-EEEEe
Confidence            999999999998887 677899999987 3  45444 4789999999988 77777766  444556666  3 4555 


Q ss_pred             -EECCCeEEEEEcCCCC--------------cc-eEEecCCCCCeEEEEEc-CCCEEEEEECCCe-EEEEEcCCCCCCCC
Q 001366          932 -GSADYRTYCYDLRNAR--------------AP-WCVLAGHEKAVSYVKFL-DSGTLVTASTDNK-LKLWDLKRTSHTGP  993 (1092)
Q Consensus       932 -gs~Dg~I~vwDlr~~~--------------~~-~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~-I~vWDl~~~~~~~~  993 (1092)
                       |+.||.|++||+++..              .+ +..+.+|...|.+++|+ ++.+|++|+.|++ |+|||++       
T Consensus       154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~-------  226 (355)
T 3vu4_A          154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE-------  226 (355)
T ss_dssp             ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT-------
T ss_pred             CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC-------
Confidence             6899999999999754              12 67889999999999999 6778999999998 9999998       


Q ss_pred             CCCceeEEEc-C-CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeecccc------CC---CCCccccCCCC
Q 001366          994 STNACSLTFS-G-HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSI------DP---ISGKETDDDNG 1062 (1092)
Q Consensus       994 ~~~~~~~~l~-~-h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~------~~---i~~~~~~~~h~ 1062 (1092)
                       .+.++.++. + |...|++++|+|+|.+|++|+.|++|+|||+..+.......+...      ..   .........+.
T Consensus       227 -~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (355)
T 3vu4_A          227 -DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH  305 (355)
T ss_dssp             -TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred             -CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence             456788887 5 999999999999999999999999999999876543222221110      00   00000111222


Q ss_pred             CCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1063 LFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1063 ~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .....++|++++..|++++.||.+++|++
T Consensus       306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          306 VRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             CCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            33467999999999999999999999986

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.97  E-value=5.9e-32  Score=309.08  Aligned_cols=245  Identities=16%  Similarity=0.144  Sum_probs=179.3

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCch-------hhHhhhhhhhhhccCCCCCCCccccceecC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-------DAALKAAGAMMVASNASPKPVGVGTAVVSN  284 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (1092)
                      |.+.+.+  +|.|.||++...    ..+..++.|+........       ......++..++...+||||+.+++.....
T Consensus        26 y~~~~~lG~G~~g~Vy~a~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           26 YSTMSPLGSGAFGFVWTAVDK----EKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             EEEEEECSSSSSCSEEEEEET----TTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             eEEEeEEEecCCEEEEEEEEC----CCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            4444444  478999999642    124556665543322111       122334466677888999999887765433


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCC-CHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGV-NLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg-sL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                      ...+                .+|||+.+| +|.+++...+ .++..+++.|+.||+.||+|||++||+||||||+|||++
T Consensus       102 ~~~~----------------lv~e~~~~g~~l~~~~~~~~-~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~  164 (335)
T 3dls_A          102 GFFQ----------------LVMEKHGSGLDLFAFIDRHP-RLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIA  164 (335)
T ss_dssp             SEEE----------------EEEECCTTSCBHHHHHHTCC-CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC
T ss_pred             CEEE----------------EEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEc
Confidence            3222                379988665 9999997764 477889999999999999999999999999999999999


Q ss_pred             cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCc
Q 001366          364 QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANE  443 (1092)
Q Consensus       364 ~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1092)
                      .++.+||+|||+++.....                                                             
T Consensus       165 ~~~~~kL~Dfg~a~~~~~~-------------------------------------------------------------  183 (335)
T 3dls_A          165 EDFTIKLIDFGSAAYLERG-------------------------------------------------------------  183 (335)
T ss_dssp             TTSCEEECCCTTCEECCTT-------------------------------------------------------------
T ss_pred             CCCcEEEeecccceECCCC-------------------------------------------------------------
Confidence            9999999999998764310                                                             


Q ss_pred             cccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHHH
Q 001366          444 SDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVLF  522 (1092)
Q Consensus       444 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvll  522 (1092)
                                                                 ......+||+.|+|||++.+..+ +.++|||||||++
T Consensus       184 -------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il  220 (335)
T 3dls_A          184 -------------------------------------------KLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTL  220 (335)
T ss_dssp             -------------------------------------------CCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHH
T ss_pred             -------------------------------------------CceeccCCCccccChhhhcCCCCCCCcccchhHHHHH
Confidence                                                       00114578999999999998776 8899999999999


Q ss_pred             HHHcCCCCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          523 FELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       523 ~ell~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |||+++..+.....   ........+  ....++.+.+|+.+||++||.+|||+.++|+||||...
T Consensus       221 ~el~~g~~pf~~~~---~~~~~~~~~--~~~~~~~l~~li~~~L~~dP~~Rps~~ell~hp~~~~~  281 (335)
T 3dls_A          221 YTLVFEENPFCELE---ETVEAAIHP--PYLVSKELMSLVSGLLQPVPERRTTLEKLVTDPWVTQP  281 (335)
T ss_dssp             HHHHHSSCSCSSGG---GGTTTCCCC--SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHCTTTTCC
T ss_pred             HHHHhCCCchhhHH---HHHhhccCC--CcccCHHHHHHHHHHccCChhhCcCHHHHhcCccccCC
Confidence            99998632221111   111111222  22357889999999999999999999999999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.1e-29  Score=297.27  Aligned_cols=262  Identities=19%  Similarity=0.243  Sum_probs=213.1

Q ss_pred             eeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC----------CceEEEeeccCccEEEEEEecCCCC-EEEEE
Q 001366          822 AVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT----------GQTVSHYIEHEKRAWSVDFSQVHPT-KLASG  890 (1092)
Q Consensus       822 ~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t----------g~~i~~l~~h~~~V~sv~fsp~~~~-~laSg  890 (1092)
                      .....|.+.|++++|+|+++.+|++++.||.|++||+.+          .+.+..+.+|...|++++|+| ++. +|++|
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~  200 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSA  200 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEE
Confidence            345678999999999997578999999999999999986          567888899999999999999 555 99999


Q ss_pred             eCCCcEEEEecCCCce-------eeeE-ecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCC--cceEEecCCCCCe
Q 001366          891 SDDCSVKLWNINEKNS-------LATI-KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNAR--APWCVLAGHEKAV  960 (1092)
Q Consensus       891 s~Dg~I~iWDl~~~~~-------l~~l-~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~--~~~~~l~~H~~~V  960 (1092)
                      +.||+|++||+.++..       ...+ .|...|.+++|+|++..+|++++.|+.|++||+++..  .++..+..|...|
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987432       2333 3677899999999666799999999999999999863  4567778999999


Q ss_pred             EEEEEcC-CC-EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC-EEEEEecCCcEEEEeCCC
Q 001366          961 SYVKFLD-SG-TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG-YIACGSESNEVYAYHRSL 1037 (1092)
Q Consensus       961 ~~v~fs~-~~-~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~I~Iwd~~~ 1037 (1092)
                      ++++|++ +. .|++|+.||+|++||++..       ..++..+.+|...|++++|+|++. +|++|+.|+.|+|||+..
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~-------~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNL-------KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCT-------TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-------CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            9999994 44 6889999999999999842       346788889999999999999985 799999999999999876


Q ss_pred             CCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCC-EEEEEecCCeEEEEEc
Q 001366         1038 PMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD-MVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1038 ~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~-~Lasgs~DG~V~vW~l 1091 (1092)
                      .............+........+|...|++++|+|++. +|++++.||.|+||++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence            32111000000000011123357888999999999999 9999999999999986

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.97  E-value=1.2e-31  Score=308.09  Aligned_cols=241  Identities=13%  Similarity=0.075  Sum_probs=181.5

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchh--hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD--AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|.||++...    ..+..++.|++........  .....++..++...+|||++.++.....+...+         
T Consensus        64 ~G~~g~Vy~a~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~---------  130 (348)
T 1u5q_A           64 HGSFGAVYFARDV----RNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAW---------  130 (348)
T ss_dssp             ECSSEEEEEEEET----TTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE---------
T ss_pred             cCCCEEEEEEEEc----cCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEE---------
Confidence            3478999999742    1245566665533222222  233456777788889999998776655433332         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|||+. |+|.+++......++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++
T Consensus       131 -------lv~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~  202 (348)
T 1u5q_A          131 -------LVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSAS  202 (348)
T ss_dssp             -------EEEECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCB
T ss_pred             -------EEEecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCce
Confidence                   3899998 58999987666678888999999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ....                                                                            
T Consensus       203 ~~~~----------------------------------------------------------------------------  206 (348)
T 1u5q_A          203 IMAP----------------------------------------------------------------------------  206 (348)
T ss_dssp             SSSS----------------------------------------------------------------------------
T ss_pred             ecCC----------------------------------------------------------------------------
Confidence            5320                                                                            


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc---CCCCCccccchhhhHHHHHHcCC---CCc
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS---GGVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~---~~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                     ....+||++|+|||++.   +..++.++|||||||+||||+++   |..
T Consensus       207 -------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~  255 (348)
T 1u5q_A          207 -------------------------------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN  255 (348)
T ss_dssp             -------------------------------BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             -------------------------------CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence                                           01346899999999985   46789999999999999999986   433


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          532 ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ................+......++.+.+|+.+||++||.+|||+.++|+||||...
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~~~~  312 (348)
T 1u5q_A          256 MNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRE  312 (348)
T ss_dssp             SCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSC
T ss_pred             CChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhChhhhcc
Confidence            333333333333222222233457889999999999999999999999999999764

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.97  E-value=2.1e-31  Score=315.34  Aligned_cols=282  Identities=15%  Similarity=0.139  Sum_probs=184.8

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.++  +.|+||++...    ..+..++.|+.... ..........++.+++...+||||+.+++.........  
T Consensus        28 y~~~~~lG~G~~g~V~~a~~~----~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~--  101 (432)
T 3n9x_A           28 YIIKHLIGRGSYGYVYLAYDK----NTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLK--  101 (432)
T ss_dssp             EEEEEEEEEETTEEEEEEEET----TTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTT--
T ss_pred             EEEEEEEeecCCEEEEEEEEC----CCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCc--
Confidence            55555444  78999999752    23455666655322 22233455667888899999999998877654332111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                          .     ....++|||++| +|.++++..+ .++..+++.|++||+.||.|||++||+||||||+||||+.++.+||
T Consensus       102 ----~-----~~~~lv~e~~~~-~L~~~~~~~~-~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL  170 (432)
T 3n9x_A          102 ----F-----DELYIVLEIADS-DLKKLFKTPI-FLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKV  170 (432)
T ss_dssp             ----C-----CCEEEEEECCSE-EHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEE
T ss_pred             ----C-----CeEEEEEecCCc-CHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEE
Confidence                0     011247888875 9999997654 5788899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++............                                                          ++.
T Consensus       171 ~DFGla~~~~~~~~~~~~~----------------------------------------------------------~~~  192 (432)
T 3n9x_A          171 CDFGLARTINSEKDTNIVN----------------------------------------------------------DLE  192 (432)
T ss_dssp             CCCTTCEEC-----------------------------------------------------------------------
T ss_pred             ccCCCcccccccccccccc----------------------------------------------------------ccc
Confidence            9999998765221100000                                                          000


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccc-cCCCCCccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEEL-SGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l-~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                      .    +   +.                ...........++..+||+||+|||++ .+..++.++|||||||+||||+++ 
T Consensus       193 ~----~---~~----------------~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~  249 (432)
T 3n9x_A          193 E----N---EE----------------PGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNML  249 (432)
T ss_dssp             -----------------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTC
T ss_pred             c----c---cc----------------ccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcc
Confidence            0    0   00                000000111234578999999999986 456799999999999999999962 


Q ss_pred             -------------CCcHH-----------------HHHHH---HH-----------------------hccccCC---CC
Q 001366          529 -------------FDSER-----------------ALAAA---MS-----------------------DLRDRIL---PP  549 (1092)
Q Consensus       529 -------------f~~~~-----------------~~~~~---~~-----------------------~~~~~~~---p~  549 (1092)
                                   |++..                 ...+.   +.                       .+.....   ..
T Consensus       250 ~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (432)
T 3n9x_A          250 QSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQ  329 (432)
T ss_dssp             TTTCSSGGGCCCSCCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHH
T ss_pred             cccccccccccccCCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHH
Confidence                         22210                 01111   00                       0000000   01


Q ss_pred             CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhccch
Q 001366          550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCA  593 (1092)
Q Consensus       550 ~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~~~  593 (1092)
                      .++..++.+.+||.+||++||.+|||+.|+|+||||........
T Consensus       330 ~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~~~  373 (432)
T 3n9x_A          330 KYPSISDDGINLLESMLKFNPNKRITIDQALDHPYLKDVRKKKL  373 (432)
T ss_dssp             HSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTCGGGTTTCCTTT
T ss_pred             HCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcChhhhhccCccc
Confidence            13456889999999999999999999999999999998765443

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.97  E-value=1.4e-31  Score=308.68  Aligned_cols=249  Identities=16%  Similarity=0.157  Sum_probs=184.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ++.|.||++...    ..+..++.|+..............++..++...+|||++.++.....+...+   
T Consensus        35 y~~~~~lg~G~~g~V~~~~~~----~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~---  107 (360)
T 3eqc_A           35 FEKISELGAGNGGVVFKVSHK----PSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS---  107 (360)
T ss_dssp             EEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEE---
T ss_pred             ceeeeeecCCCCeEEEEEEEC----CCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEE---
Confidence            4444444  478999999863    2245566666543322333345567777888889999999877655443333   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhc-CccccCCCCCCeEEccCCcEEE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQ-GVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~-gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                   ++|||++|++|.++++..+ .++...+..++.||+.||.|||++ ||+||||||+||+++.++.+||
T Consensus       108 -------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl  173 (360)
T 3eqc_A          108 -------------ICMEHMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKL  173 (360)
T ss_dssp             -------------EEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEE
T ss_pred             -------------EEEECCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEE
Confidence                         3899999999999997765 477779999999999999999996 9999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++......                                                                   
T Consensus       174 ~Dfg~~~~~~~~~-------------------------------------------------------------------  186 (360)
T 3eqc_A          174 CDFGVSGQLIDSM-------------------------------------------------------------------  186 (360)
T ss_dssp             CCCCCCHHHHHHC-------------------------------------------------------------------
T ss_pred             EECCCCccccccc-------------------------------------------------------------------
Confidence            9999886543100                                                                   


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC--
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                            .....||+.|+|||++.+..++.++|||||||++|||+++  
T Consensus       187 --------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~  228 (360)
T 3eqc_A          187 --------------------------------------ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY  228 (360)
T ss_dssp             ------------------------------------------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSC
T ss_pred             --------------------------------------ccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence                                                  0145789999999999999999999999999999999985  


Q ss_pred             -CCcHHHHH--HH---------------------------------------HHhccccCCCC-CCCCCChhHHHHHHhc
Q 001366          529 -FDSERALA--AA---------------------------------------MSDLRDRILPP-SFLSENPKEAGFCLWQ  565 (1092)
Q Consensus       529 -f~~~~~~~--~~---------------------------------------~~~~~~~~~p~-~~~~~~~~~~~li~~l  565 (1092)
                       |.......  ..                                       ...+.....+. .....++.+.+|+.+|
T Consensus       229 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  308 (360)
T 3eqc_A          229 PIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKC  308 (360)
T ss_dssp             CSSCCCHHHHHHHHC------------------------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHH
Confidence             43321111  10                                       11111111111 1123467899999999


Q ss_pred             cccCCCCCCCHHHHhhhhhhhhh
Q 001366          566 LHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       566 L~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |++||.+|||+.|+|+||||...
T Consensus       309 L~~dP~~Rpt~~ell~hp~~~~~  331 (360)
T 3eqc_A          309 LIKNPAERADLKQLMVHAFIKRS  331 (360)
T ss_dssp             HCSSTTTSCCHHHHHTSHHHHHH
T ss_pred             hhcChhhCCCHHHHhhChHhhcc
Confidence            99999999999999999999875

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.97  E-value=2e-31  Score=302.48  Aligned_cols=250  Identities=16%  Similarity=0.134  Sum_probs=184.5

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch-----hhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-----DAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      |.+.+.++  |.|.||++...    ..+..++.|+........     ......++..++...+|||++.++........
T Consensus        14 y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   89 (321)
T 2a2a_A           14 YDIGEELGSGQFAIVKKCREK----STGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD   89 (321)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             EEEeeEeeecCCEEEEEEEEC----CCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence            44444443  78999999763    224555665543222111     12334456677888899999987766543332


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                .+|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+||+++.++
T Consensus        90 ~~----------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~  152 (321)
T 2a2a_A           90 VV----------------LILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKN  152 (321)
T ss_dssp             EE----------------EEECCCCSCBHHHHHHTCS-CEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTT
T ss_pred             EE----------------EEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCC
Confidence            22                3899999999999997654 577889999999999999999999999999999999999888


Q ss_pred             ----cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccC
Q 001366          367 ----QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN  442 (1092)
Q Consensus       367 ----~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1092)
                          .+|++|||+++......                                                           
T Consensus       153 ~~~~~~kl~Dfg~~~~~~~~~-----------------------------------------------------------  173 (321)
T 2a2a_A          153 IPIPHIKLIDFGLAHEIEDGV-----------------------------------------------------------  173 (321)
T ss_dssp             SSSCCEEECCCTTCEECCTTC-----------------------------------------------------------
T ss_pred             CCcCCEEEccCccceecCccc-----------------------------------------------------------
Confidence                79999999987643100                                                           


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHH
Q 001366          443 ESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLF  522 (1092)
Q Consensus       443 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll  522 (1092)
                                                                   ......||+.|+|||++.+..++.++|||||||+|
T Consensus       174 ---------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il  208 (321)
T 2a2a_A          174 ---------------------------------------------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT  208 (321)
T ss_dssp             ---------------------------------------------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred             ---------------------------------------------cccccCCCCCccCcccccCCCCCCccccHHHHHHH
Confidence                                                         01134689999999999999999999999999999


Q ss_pred             HHHcCC---CCcHHHHHHHHHhcccc-CCC-CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          523 FELFGR---FDSERALAAAMSDLRDR-ILP-PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       523 ~ell~~---f~~~~~~~~~~~~~~~~-~~p-~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |||+++   |................ .++ ..+...++.+.+|+.+||++||.+|||+.|+|+||||...
T Consensus       209 ~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp~~~~~  279 (321)
T 2a2a_A          209 YILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPV  279 (321)
T ss_dssp             HHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHSTTTSCS
T ss_pred             HHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcCccccCC
Confidence            999985   44433322222222211 112 1234567889999999999999999999999999999764

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.97  E-value=1e-31  Score=310.98  Aligned_cols=256  Identities=13%  Similarity=0.070  Sum_probs=185.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  +|.|+||+|...+. -...+..++.|++.............++..++...+||||+.++.........+  
T Consensus        73 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~--  150 (367)
T 3l9p_A           73 ITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF--  150 (367)
T ss_dssp             EEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE--
T ss_pred             eEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE--
Confidence            4444433  47899999984321 011244566666543333333444556777788889999998877654333222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcC------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARG------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                                    ++||||+|++|.++|+..+      ..++..+++.|+.||+.||+|||++||+||||||+||||+.
T Consensus       151 --------------lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~  216 (367)
T 3l9p_A          151 --------------ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTC  216 (367)
T ss_dssp             --------------EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESC
T ss_pred             --------------EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEec
Confidence                          3899999999999997654      34788899999999999999999999999999999999995


Q ss_pred             CC---cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          365 SN---QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       365 ~~---~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      ++   .+||+|||+++.......                                                         
T Consensus       217 ~~~~~~~kL~DFG~a~~~~~~~~---------------------------------------------------------  239 (367)
T 3l9p_A          217 PGPGRVAKIGDFGMARDIYRAGY---------------------------------------------------------  239 (367)
T ss_dssp             SSTTCCEEECCCHHHHHHHHHSS---------------------------------------------------------
T ss_pred             CCCCceEEECCCccccccccccc---------------------------------------------------------
Confidence            55   599999999986541100                                                         


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                                                                  ........||+.|+|||++.+..++.++|||||||+
T Consensus       240 --------------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~i  275 (367)
T 3l9p_A          240 --------------------------------------------YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL  275 (367)
T ss_dssp             --------------------------------------------CTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             --------------------------------------------cccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHH
Confidence                                                        000114567899999999999999999999999999


Q ss_pred             HHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          522 FFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       522 l~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ||||++ +   |....... ....+.....++.....++.+.+|+.+||+.||.+|||+.+|+++.++..
T Consensus       276 l~ellt~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~  344 (367)
T 3l9p_A          276 LWEIFSLGYMPYPSKSNQE-VLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  344 (367)
T ss_dssp             HHHHHTTSCCSSTTCCHHH-HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCCHHH-HHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence            999997 5   44333322 22222222223333455788999999999999999999999999987654

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.97  E-value=1.6e-31  Score=311.96  Aligned_cols=251  Identities=14%  Similarity=0.137  Sum_probs=176.2

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCC--CCCCCccccceecCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNA--SPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  288 (1092)
                      |.+.+.+  +|.|+||++...+     +..++.|+........ ......++..++....  ||||+.+++....+...+
T Consensus        58 y~~~~~LG~G~fg~Vy~~~~~~-----~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~  132 (390)
T 2zmd_A           58 YSILKQIGSGGSSKVFQVLNEK-----KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY  132 (390)
T ss_dssp             EEEEEEEECCSSEEEEEEECTT-----CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             eEEEEEEccCCCeEEEEEEcCC-----CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEE
Confidence            4444444  4789999997643     4556666653332222 2233445555666654  599998877655444333


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      ++|| +.|++|.++|...+ .++..+++.|++||+.||.|||++||+||||||+||||+ ++.+
T Consensus       133 ----------------lv~E-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~  193 (390)
T 2zmd_A          133 ----------------MVME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGML  193 (390)
T ss_dssp             ----------------EEEE-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCE
T ss_pred             ----------------EEEe-cCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeE
Confidence                            2677 78999999998765 567778999999999999999999999999999999995 6899


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.+.....                                                                
T Consensus       194 kl~DFG~a~~~~~~~~----------------------------------------------------------------  209 (390)
T 2zmd_A          194 KLIDFGIANQMQPDTT----------------------------------------------------------------  209 (390)
T ss_dssp             EECCCSSSCCC---------------------------------------------------------------------
T ss_pred             EEEecCccccccCCCc----------------------------------------------------------------
Confidence            9999999876441000                                                                


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----------CCCCccccchh
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----------GVCTTSSNIYS  517 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----------~~~t~~sDIwS  517 (1092)
                                                           .......+||++|+|||++.+           ..++.++||||
T Consensus       210 -------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwS  252 (390)
T 2zmd_A          210 -------------------------------------SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS  252 (390)
T ss_dssp             -----------------------------------------CCSCCCGGGCCHHHHHCC------------CCHHHHHHH
T ss_pred             -------------------------------------cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHH
Confidence                                                 000124579999999999875           46899999999


Q ss_pred             hhHHHHHHcCC---CCcHHHH-HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          518 LGVLFFELFGR---FDSERAL-AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       518 LGvll~ell~~---f~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      |||+||||+++   |...... ......+......+.....++.+.+|+.+||.+||.+|||+.|+|+||||....
T Consensus       253 lGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~~~~~~  328 (390)
T 2zmd_A          253 LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQT  328 (390)
T ss_dssp             HHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred             HHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhCcCccccC
Confidence            99999999986   4332111 122222222111111222357788999999999999999999999999998643

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.97  E-value=3.2e-32  Score=307.57  Aligned_cols=258  Identities=19%  Similarity=0.264  Sum_probs=187.6

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.++  |.|.||++...    ..+..++.|++.......  ......++...+...+||||+.+++......... 
T Consensus        14 y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~-   88 (311)
T 3ork_A           14 YELGEILGFGGMSEVHLARDL----RDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAG-   88 (311)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTE-
T ss_pred             EEEEEEEccCCCEEEEEEEEC----CCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCC-
Confidence            55555554  78999999852    225566666654322211  2233456677788889999998876654332220 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                          ..+       .++|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||++.++.+|
T Consensus        89 ----~~~-------~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~k  156 (311)
T 3ork_A           89 ----PLP-------YIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVK  156 (311)
T ss_dssp             ----EEE-------EEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEE
T ss_pred             ----ccc-------EEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEE
Confidence                001       13899999999999997765 477779999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++.+.....                                                                 
T Consensus       157 l~Dfg~a~~~~~~~~-----------------------------------------------------------------  171 (311)
T 3ork_A          157 VMDFGIARAIADSGN-----------------------------------------------------------------  171 (311)
T ss_dssp             ECCCSCC-------------------------------------------------------------------------
T ss_pred             EeeccCccccccccc-----------------------------------------------------------------
Confidence            999999876541100                                                                 


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                         ........+||+.|+|||++.+..++.++|||||||+||||+++ 
T Consensus       172 -----------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~  216 (311)
T 3ork_A          172 -----------------------------------SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE  216 (311)
T ss_dssp             ---------------------------------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------------------------ccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCC
Confidence                                               00011145789999999999999999999999999999999985 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCC--CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPS--FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                        |..................++.  ....++.+.+|+.+||++||.+||++.++|.|+|+...
T Consensus       217 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  280 (311)
T 3ork_A          217 PPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  280 (311)
T ss_dssp             CSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             CCCCCCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHh
Confidence              6655555555555555444432  34567889999999999999999999999999999754

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.97  E-value=2.3e-32  Score=316.80  Aligned_cols=262  Identities=12%  Similarity=0.035  Sum_probs=169.9

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccC-chhhHhhhhh----hhhhccCCCCCCCccccce-----
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAG----AMMVASNASPKPVGVGTAV-----  281 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----  281 (1092)
                      |.+.+.++  |.|+||++...    ..+..++.|++..... .......++.    .+++.. +|||++..+...     
T Consensus        64 y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d  138 (371)
T 3q60_A           64 LKLVEPLRVGDRSVVFLVRDV----ERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSD  138 (371)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCE
T ss_pred             eeeeeeccCCCCEEEEEEEEC----CCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeeh
Confidence            55555554  78999999852    1255667766644333 2222333333    356667 899988643221     


Q ss_pred             --ecCCCCCCCccCCCCC---ccc-cCCCcccccCCCCCHHHHHhhcCCCCCHHHH------HHHHHHHHHHHHHhhhcC
Q 001366          282 --VSNGSLDLGARTGVPA---SCW-IGGLRQGSSDHGVNLREWLNARGHKGKRIEC------LYIFRQIVALVDYHHTQG  349 (1092)
Q Consensus       282 --~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~------~~i~~qil~~l~~lHs~g  349 (1092)
                        .......   ......   .++ ....++|||++ ++|.++|+..+..++....      +.++.||+.||+|||++|
T Consensus       139 ~~~~~~~~~---~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~  214 (371)
T 3q60_A          139 AVAVQSQPP---FAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKG  214 (371)
T ss_dssp             EEEETTSCS---SSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             heecCCCCC---eeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCC
Confidence              1111100   000000   000 11245899999 8999999875545555455      677799999999999999


Q ss_pred             ccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccc
Q 001366          350 VTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSL  429 (1092)
Q Consensus       350 IvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (1092)
                      |+||||||+||||+.++.+||+|||+++.....                                               
T Consensus       215 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----------------------------------------------  247 (371)
T 3q60_A          215 LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----------------------------------------------  247 (371)
T ss_dssp             EEETTCSGGGEEECTTSCEEECCGGGEEETTCE-----------------------------------------------
T ss_pred             CccCcCCHHHEEECCCCCEEEEecceeeecCCC-----------------------------------------------
Confidence            999999999999999999999999998764310                                               


Q ss_pred             ccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC--C
Q 001366          430 FPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG--G  507 (1092)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~--~  507 (1092)
                                                                                 .....+|+.|+|||++.+  .
T Consensus       248 -----------------------------------------------------------~~~~~~t~~y~aPE~~~~~~~  268 (371)
T 3q60_A          248 -----------------------------------------------------------GPASSVPVTYAPREFLNASTA  268 (371)
T ss_dssp             -----------------------------------------------------------EEGGGSCGGGCCHHHHTCSEE
T ss_pred             -----------------------------------------------------------ccCccCCcCCcChhhccCCCC
Confidence                                                                       002346689999999987  7


Q ss_pred             CCCccccchhhhHHHHHHcCC---CCcHHHHHH-HHH------hccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          508 VCTTSSNIYSLGVLFFELFGR---FDSERALAA-AMS------DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       508 ~~t~~sDIwSLGvll~ell~~---f~~~~~~~~-~~~------~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                      .++.++|||||||+||||+++   |........ .+.      ........+.....++.+.+|+.+||++||.+|||+.
T Consensus       269 ~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  348 (371)
T 3q60_A          269 TFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPL  348 (371)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHH
T ss_pred             CcCccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHH
Confidence            799999999999999999986   333211000 000      0011112233346688999999999999999999999


Q ss_pred             HHhhhhhhhhhhc
Q 001366          578 EILQSEVTNEFQE  590 (1092)
Q Consensus       578 eiL~~~~~~~~~~  590 (1092)
                      ++|+||||.+...
T Consensus       349 e~l~hp~f~~~~~  361 (371)
T 3q60_A          349 EAMETPEFLQLQN  361 (371)
T ss_dssp             HHTTSHHHHHHHH
T ss_pred             HHhcCHHHHHHHH
Confidence            9999999987644

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.2e-29  Score=295.79  Aligned_cols=283  Identities=14%  Similarity=0.184  Sum_probs=226.6

Q ss_pred             EEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 001366          783 CSISFDRDEDH-FAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTG  861 (1092)
Q Consensus       783 ~sl~fspdg~~-latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg  861 (1092)
                      ..++++|+... +++|+.||.|+||++.....  . ........+|...|++++|+|+++.+|++|+.||+|+|||+.++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~--~-~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGR--V-DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEE--C-CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCC--C-CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            34788887654 44678999999999864211  0 01122345799999999999944899999999999999999987


Q ss_pred             -------ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeE--e-cCCceEEEEEccCCCeEEEE
Q 001366          862 -------QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI--K-NIANVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       862 -------~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l--~-~~~~V~sl~fsp~~~~~lat  931 (1092)
                             +.+..+.+|...|++++|+|....+|++|+.|++|++||+++++++..+  . +...|.+++|+|++. +|++
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  193 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LICT  193 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS-CEEE
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC-EEEE
Confidence                   6688899999999999999933479999999999999999999999888  3 678899999999985 8999


Q ss_pred             EECCCeEEEEEcCCCCcceEEe-cCCCCC-eEEEEEc-CCCEEEEE---ECCCeEEEEEcCCCCCCCCCCCceeEEE-cC
Q 001366          932 GSADYRTYCYDLRNARAPWCVL-AGHEKA-VSYVKFL-DSGTLVTA---STDNKLKLWDLKRTSHTGPSTNACSLTF-SG 1004 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~~~~~~l-~~H~~~-V~~v~fs-~~~~L~Sg---s~Dg~I~vWDl~~~~~~~~~~~~~~~~l-~~ 1004 (1092)
                      ++.|+.|++||+++++. +..+ .+|... +.++.|+ ++.+|++|   +.|+.|++||+++...       .+... ..
T Consensus       194 ~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-------~~~~~~~~  265 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-------PLSLQELD  265 (402)
T ss_dssp             EETTSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-------CSEEEECC
T ss_pred             EecCCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-------CceEEecc
Confidence            99999999999998764 4555 788876 8999999 45566677   6899999999985321       12222 25


Q ss_pred             CCCCeEEEEEecCCCEEE-EEecCCcEEEEeCCCCCc-eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec
Q 001366         1005 HTNEKNFVGLSTADGYIA-CGSESNEVYAYHRSLPMP-ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS 1082 (1092)
Q Consensus      1005 h~~~V~~v~~spdg~~la-sgs~Dg~I~Iwd~~~~~~-i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~ 1082 (1092)
                      |...+.+++|+|++.+|+ +|+.|+.|++|++..+++ +..+.-            ..|...|.+++|+|++.++++  .
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~------------~~~~~~v~~~~~sp~~~~~~s--~  331 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM------------FSSKESQRGMGYMPKRGLEVN--K  331 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE------------ECCSSCCSEEEECCGGGSCGG--G
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc------------cccCCcccceEEeccccccee--c
Confidence            778899999999999886 566799999999988775 333320            125678999999999998865  5


Q ss_pred             CCeEEEEEc
Q 001366         1083 SGCIKVLQM 1091 (1092)
Q Consensus      1083 DG~V~vW~l 1091 (1092)
                      ++.+++|++
T Consensus       332 ~~~~~~~~l  340 (402)
T 2aq5_A          332 CEIARFYKL  340 (402)
T ss_dssp             TEEEEEEEE
T ss_pred             ceeEEEEEc
Confidence            679999986

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.97  E-value=4.3e-32  Score=300.83  Aligned_cols=254  Identities=15%  Similarity=0.114  Sum_probs=164.0

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      +.+|.+.+.++  +.|.||++...    ..+..++.|+......  ........++..++...+|||++.++........
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   85 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESI----HTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNY   85 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSE
T ss_pred             cccceeeeeecCCCceEEEEEEEc----cCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCe
Confidence            34555555544  78999999752    1245556655522111  1111334456667788899999987766543322


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                ++|||++|++|.+++......++..+++.++.||+.||+|||++||+||||||+||+++.++
T Consensus        86 ~~----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~  149 (278)
T 3cok_A           86 VY----------------LVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNM  149 (278)
T ss_dssp             EE----------------EEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTC
T ss_pred             EE----------------EEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC
Confidence            22                38999999999999988766788889999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+|++|||+++....+.                                                               
T Consensus       150 ~~kl~dfg~~~~~~~~~---------------------------------------------------------------  166 (278)
T 3cok_A          150 NIKIADFGLATQLKMPH---------------------------------------------------------------  166 (278)
T ss_dssp             CEEECCCTTCEECC------------------------------------------------------------------
T ss_pred             CEEEEeecceeeccCCC---------------------------------------------------------------
Confidence            99999999887643100                                                               


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              .......||+.|+|||.+.+..++.++|||||||++|||+
T Consensus       167 ----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  206 (278)
T 3cok_A          167 ----------------------------------------EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLL  206 (278)
T ss_dssp             -----------------------------------------------------------------CTHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHH
Confidence                                                    0001346899999999999988999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ++   |.................  ......++.+.+|+.+||++||.+|||+.++|+||||....
T Consensus       207 ~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  270 (278)
T 3cok_A          207 IGRPPFDTDTVKNTLNKVVLADY--EMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRNS  270 (278)
T ss_dssp             HSSCSSCCCSCC-----CCSSCC--CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSTTTC---
T ss_pred             hCCCCCCChhHHHHHHHHhhccc--CCccccCHHHHHHHHHHcccCHhhCCCHHHHhcCccccCCC
Confidence            85   433221111111111111  11223478899999999999999999999999999998643

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.97  E-value=1.2e-31  Score=309.14  Aligned_cols=244  Identities=17%  Similarity=0.181  Sum_probs=173.5

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-----CCCCCCccccceecCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-----ASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  286 (1092)
                      |.+.+.+  +|.|.||++....    .+..++.|++...  .........+..++...     .||||+.++........
T Consensus        37 y~~~~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~  110 (360)
T 3llt_A           37 FLVIRKMGDGTFGRVLLCQHID----NKKYYAVKVVRNI--KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDH  110 (360)
T ss_dssp             EEEEEEEEECSSEEEEEEEETT----TCCEEEEEEECSC--HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTE
T ss_pred             EEEEEEEcccCCeEEEEEEECC----CCeEEEEEEeccc--hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCe
Confidence            4554444  4789999998632    2455666665321  11222223333444444     49999988776554433


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc-
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ-  364 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~-  364 (1092)
                      .+                ++|||+ |++|.+++.... ..++..+++.|+.||+.||+|||++||+||||||+||||+. 
T Consensus       111 ~~----------------lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~  173 (360)
T 3llt_A          111 MC----------------LIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDP  173 (360)
T ss_dssp             EE----------------EEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCT
T ss_pred             eE----------------EEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccc
Confidence            33                379999 999999997654 35788899999999999999999999999999999999975 


Q ss_pred             ------------------------CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccC
Q 001366          365 ------------------------SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHN  420 (1092)
Q Consensus       365 ------------------------~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (1092)
                                              .+.+||+|||+++....                                       
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~---------------------------------------  214 (360)
T 3llt_A          174 YFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD---------------------------------------  214 (360)
T ss_dssp             TCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS---------------------------------------
T ss_pred             cccccccchhcccccccccccccCCCCEEEEeccCceecCC---------------------------------------
Confidence                                    77899999988765220                                       


Q ss_pred             cccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccC
Q 001366          421 MNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYAS  500 (1092)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~a  500 (1092)
                                                                                         .....+||+.|+|
T Consensus       215 -------------------------------------------------------------------~~~~~~gt~~y~a  227 (360)
T 3llt_A          215 -------------------------------------------------------------------YHGSIINTRQYRA  227 (360)
T ss_dssp             -------------------------------------------------------------------CCCSCCSCGGGCC
T ss_pred             -------------------------------------------------------------------CCcCccCcccccC
Confidence                                                                               0014568999999


Q ss_pred             cccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHH--HHHHhccccC-------------------------CCCC
Q 001366          501 PEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALA--AAMSDLRDRI-------------------------LPPS  550 (1092)
Q Consensus       501 PE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~--~~~~~~~~~~-------------------------~p~~  550 (1092)
                      ||++.+..++.++|||||||+||||+++   |.......  ..+..+....                         .|..
T Consensus       228 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~  307 (360)
T 3llt_A          228 PEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPEN  307 (360)
T ss_dssp             HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTT
T ss_pred             cHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCccc
Confidence            9999999999999999999999999985   54432222  2221111110                         0000


Q ss_pred             -----------------CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          551 -----------------FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       551 -----------------~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                                       ....++.+.+|+.+||++||.+|||+.|+|+||||+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          308 ASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             CSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             ccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence                             011236677999999999999999999999999984

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.97  E-value=2.5e-31  Score=308.22  Aligned_cols=252  Identities=16%  Similarity=0.142  Sum_probs=182.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCC---ccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLN---AFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  286 (1092)
                      .|.+.+.++  |.|.||++....   .-...+..++.|+..............++..++... +||||+.++.....+..
T Consensus        82 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~  161 (370)
T 2psq_A           82 KLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP  161 (370)
T ss_dssp             GEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSS
T ss_pred             HCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCC
Confidence            455555444  689999986411   001113345555553332233334456667777777 89999998776554333


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCcc
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVT  351 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIv  351 (1092)
                      .+                ++|||++||+|.++|...+               ..++..+++.++.||+.||+|||++||+
T Consensus       162 ~~----------------lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~iv  225 (370)
T 2psq_A          162 LY----------------VIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI  225 (370)
T ss_dssp             CE----------------EEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             EE----------------EEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            33                3899999999999997654               2467789999999999999999999999


Q ss_pred             ccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccccc
Q 001366          352 FLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFP  431 (1092)
Q Consensus       352 HrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (1092)
                      ||||||+||||+.++.+||+|||+++.......                                               
T Consensus       226 HrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-----------------------------------------------  258 (370)
T 2psq_A          226 HRDLAARNVLVTENNVMKIADFGLARDINNIDY-----------------------------------------------  258 (370)
T ss_dssp             CSCCCGGGEEECTTCCEEECCCSSCEETTCCCT-----------------------------------------------
T ss_pred             ccccchhhEEECCCCCEEEccccCCcccCcccc-----------------------------------------------
Confidence            999999999999999999999999876441100                                               


Q ss_pred             CccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCc
Q 001366          432 SKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTT  511 (1092)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~  511 (1092)
                                                                            ........||+.|+|||++.+..++.
T Consensus       259 ------------------------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~  284 (370)
T 2psq_A          259 ------------------------------------------------------YKKTTNGRLPVKWMAPEALFDRVYTH  284 (370)
T ss_dssp             ------------------------------------------------------TCTTTTTTSCGGGCCHHHHHTCCCCH
T ss_pred             ------------------------------------------------------eecccCCCcccceECHhHhcCCCCCc
Confidence                                                                  00011345788899999999999999


Q ss_pred             cccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          512 SSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       512 ~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ++|||||||+||||++ +   |.... ....+..+.....++.....++.+.+|+.+||+.||.+||++.|++++
T Consensus       285 ~~DvwslG~il~ellt~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~  358 (370)
T 2psq_A          285 QSDVWSFGVLMWEIFTLGGSPYPGIP-VEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  358 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSSTTCC-GGGHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCC-HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            9999999999999998 4   33221 112222333333333444567889999999999999999999999985

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.6e-31  Score=306.27  Aligned_cols=243  Identities=15%  Similarity=0.163  Sum_probs=171.1

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchh-hHhhhhhhhhhccCCC--CCCCccccceecCCCCCCCccCCCCC
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-AALKAAGAMMVASNAS--PKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      +|.|.||++...+     +..++.|++........ .....++...+....|  ||++.+++....+...+         
T Consensus        20 G~~g~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~---------   85 (343)
T 3dbq_A           20 GGSSKVFQVLNEK-----KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY---------   85 (343)
T ss_dssp             CSSEEEEEEECTT-----SCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE---------
T ss_pred             CCCeEEEEEEeCC-----CCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEE---------
Confidence            4789999997643     45566665533322222 2333445566666655  89998877655433333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             ++|| +.|++|.+++...+ .++..+++.|+.||+.||+|||++||+||||||+|||++ ++.+||+|||+++
T Consensus        86 -------lv~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~  155 (343)
T 3dbq_A           86 -------MVME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIAN  155 (343)
T ss_dssp             -------EEEC-CCSEEHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSC
T ss_pred             -------EEEe-CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeeccccc
Confidence                   2677 78899999998764 577779999999999999999999999999999999996 7889999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .......                                                                         
T Consensus       156 ~~~~~~~-------------------------------------------------------------------------  162 (343)
T 3dbq_A          156 QMQPDTT-------------------------------------------------------------------------  162 (343)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCcccc-------------------------------------------------------------------------
Confidence            6441000                                                                         


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----------CCCCccccchhhhHHHHHHc
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----------GVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----------~~~t~~sDIwSLGvll~ell  526 (1092)
                                                  .......+||++|+|||++.+           ..++.++|||||||+||||+
T Consensus       163 ----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell  214 (343)
T 3dbq_A          163 ----------------------------SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMT  214 (343)
T ss_dssp             -----------------------------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------cccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHH
Confidence                                        000114579999999999865           67899999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCCCCCC-CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRILPPSF-LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ++   |.........+........+..+ ...++.+.+|+.+||++||.+|||+.|+|+||||...
T Consensus       215 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~  280 (343)
T 3dbq_A          215 YGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQ  280 (343)
T ss_dssp             HSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSC
T ss_pred             hCCCcchhhhhHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhCcccccc
Confidence            86   43221111222222222222222 2335678899999999999999999999999999754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.3e-30  Score=301.54  Aligned_cols=299  Identities=13%  Similarity=0.127  Sum_probs=222.7

Q ss_pred             hccchhhhhhccccccCC-C--CcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 001366          727 RDRENLFLAQQDQEIQNP-T--DRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKI  803 (1092)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~-~--~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I  803 (1092)
                      .+|.+.+..+.+    +| +  -.++++.|+++++|+....+...........+|...|++++|+|++++|++|+.|++|
T Consensus        60 ~~h~~~V~~~~~----s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i  135 (437)
T 3gre_A           60 ENEPNSITSSAV----SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQI  135 (437)
T ss_dssp             TTTTSCEEEEEE----ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cCCCCceEEEEE----CCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence            666666666543    34 3  3457889999999998651111111101112589999999999999999999999999


Q ss_pred             EEEEcCCCCCCC-c---ccccceeee---c--CCCCeEEEE--EecCCCCEEEEEECCCcEEEEECCCCceEEEeec--c
Q 001366          804 KIFEFNALFNDS-V---DVYYPAVEM---S--NRSKLSCVC--WNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE--H  870 (1092)
Q Consensus       804 ~Iwd~~~~~~~~-~---~~~~~~~~~---~--h~~~V~~v~--~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~--h  870 (1092)
                      +|||+....... .   ..+ .....   .  +...+.++.  ++++ +.+|++|+.||+|++||+.+++.+..+.+  |
T Consensus       136 ~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h  213 (437)
T 3gre_A          136 IVLKVNHYQQESEVKFLNCE-CIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTLERLQIIENSPR  213 (437)
T ss_dssp             EEEEEEEEEETTEEEEEEEE-EEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred             EEEEeccccCCceeeccccc-eeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence            999985210000 0   001 11111   1  567788888  4566 88999999999999999999999999998  8


Q ss_pred             CccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe--cCCceEEEEEcc----CCCeEEEEEECCCeEEEEEcC
Q 001366          871 EKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK--NIANVCCVQFSA----HSSHLLAFGSADYRTYCYDLR  944 (1092)
Q Consensus       871 ~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~--~~~~V~sl~fsp----~~~~~latgs~Dg~I~vwDlr  944 (1092)
                      ...|++++|+| ++.+|++|+.||+|++||+++++++.++.  +...|.+++|+|    ++ .+|++|+.|+.|++||++
T Consensus       214 ~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          214 HGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             GCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETT
T ss_pred             CCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcC
Confidence            99999999999 89999999999999999999999998874  567899997765    44 589999999999999999


Q ss_pred             CCCcceEEecC--------------------------CCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCC----
Q 001366          945 NARAPWCVLAG--------------------------HEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPS----  994 (1092)
Q Consensus       945 ~~~~~~~~l~~--------------------------H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~----  994 (1092)
                      +++. +..+.+                          |...|++++|+++.+|++|+.|+.|++||+.+.......    
T Consensus       292 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  370 (437)
T 3gre_A          292 KGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPS  370 (437)
T ss_dssp             TTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred             CCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence            7753 233322                          666789999997778999999999999999854321000    


Q ss_pred             -------------------------CCceeEEEcCCCCCeEEEEEecC--CCEEEEEecCCcEEEEe
Q 001366          995 -------------------------TNACSLTFSGHTNEKNFVGLSTA--DGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       995 -------------------------~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~I~Iwd 1034 (1092)
                                               ..........|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          371 RFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                     00001112238999999999998  77999999999999994

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.97  E-value=1.7e-31  Score=297.56  Aligned_cols=251  Identities=18%  Similarity=0.129  Sum_probs=173.2

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhh-HhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDA-ALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.+  +|.|.||++...    ..+..++.|++......... ........++....|||++.++.....+...+ 
T Consensus         8 ~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~-   82 (290)
T 3fme_A            8 DLEPIMELGRGAYGVVEKMRHV----PSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVW-   82 (290)
T ss_dssp             GEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEE-
T ss_pred             hhhhHHhcCCCCCeEEEEEEec----CCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEE-
Confidence            34444444  478999999862    22556666665433222222 22333344477789999998877655333322 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhc-CccccCCCCCCeEEccC
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQ-GVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~-gIvHrDLKP~Nill~~~  365 (1092)
                                     ++|||++| +|.+++..   .+..++..+++.|+.||+.||+|||++ ||+||||||+||+++.+
T Consensus        83 ---------------lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~  146 (290)
T 3fme_A           83 ---------------ICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINAL  146 (290)
T ss_dssp             ---------------EEEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTT
T ss_pred             ---------------EEEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCC
Confidence                           37999986 99888754   455788889999999999999999998 99999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++......                                                              
T Consensus       147 ~~~kl~Dfg~~~~~~~~~--------------------------------------------------------------  164 (290)
T 3fme_A          147 GQVKMCDFGISGYLVDDV--------------------------------------------------------------  164 (290)
T ss_dssp             CCEEBCCC------------------------------------------------------------------------
T ss_pred             CCEEEeecCCcccccccc--------------------------------------------------------------
Confidence            999999999987643100                                                              


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccc----cCCCCCccccchhhhHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEEL----SGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l----~~~~~t~~sDIwSLGvl  521 (1092)
                                                                ......||+.|+|||++    .+..++.++|||||||+
T Consensus       165 ------------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~i  202 (290)
T 3fme_A          165 ------------------------------------------AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGIT  202 (290)
T ss_dssp             -----------------------------------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHH
T ss_pred             ------------------------------------------cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHH
Confidence                                                      00134689999999996    45678999999999999


Q ss_pred             HHHHcCC---CCcH-HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          522 FFELFGR---FDSE-RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       522 l~ell~~---f~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +|||+++   |... ......................++.+.+|+.+||++||.+|||+.|+|+||||...
T Consensus       203 l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~~  273 (290)
T 3fme_A          203 MIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLH  273 (290)
T ss_dssp             HHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             HHHHHHCCCCccccCchHHHHHHHhccCCCCcccccCCHHHHHHHHHHhhcChhhCcCHHHHHhCcccccC
Confidence            9999985   4331 22222222222222222233457889999999999999999999999999999864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.97  E-value=1.4e-31  Score=304.69  Aligned_cols=245  Identities=16%  Similarity=0.163  Sum_probs=180.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|+||++...    ..+..++.|++...... .......++...+... .|||++.++.........+         
T Consensus        39 ~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~---------  105 (327)
T 3lm5_A           39 RGKFAVVRQCISK----STGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEII---------  105 (327)
T ss_dssp             EETTEEEEEEEET----TTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE---------
T ss_pred             CCCCeEEEEEEEC----CCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEE---------
Confidence            4578999999763    22556666655332221 1123334444455555 5699998776654333222         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc---CCcEEEecc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ---SNQVKYIGP  373 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~---~~~vkl~Df  373 (1092)
                             ++|||++|++|.+++... ...++..+++.|+.||+.||+|||++||+||||||+|||++.   .+.+||+||
T Consensus       106 -------lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Df  178 (327)
T 3lm5_A          106 -------LILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDF  178 (327)
T ss_dssp             -------EEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCG
T ss_pred             -------EEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeC
Confidence                   389999999999998543 356888899999999999999999999999999999999987   789999999


Q ss_pred             cccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCC
Q 001366          374 IIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPH  453 (1092)
Q Consensus       374 g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  453 (1092)
                      |+++.....                                                                       
T Consensus       179 g~a~~~~~~-----------------------------------------------------------------------  187 (327)
T 3lm5_A          179 GMSRKIGHA-----------------------------------------------------------------------  187 (327)
T ss_dssp             GGCEEC--------------------------------------------------------------------------
T ss_pred             ccccccCCc-----------------------------------------------------------------------
Confidence            998764310                                                                       


Q ss_pred             CCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CC
Q 001366          454 SHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                       ......+||+.|+|||++.+..++.++|||||||+||||+++   |.
T Consensus       188 ---------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~  234 (327)
T 3lm5_A          188 ---------------------------------CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFV  234 (327)
T ss_dssp             ---------------------------------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ---------------------------------cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                                             001145789999999999999999999999999999999985   44


Q ss_pred             cHHHHHHH--HHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          531 SERALAAA--MSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       531 ~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ........  +........++.+...++.+.+|+.+||++||.+|||+.++|+||||...
T Consensus       235 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~~~~  294 (327)
T 3lm5_A          235 GEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQW  294 (327)
T ss_dssp             CSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCGGGCCC
T ss_pred             CCCchHHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCCHhhccc
Confidence            43333222  23333333444556678889999999999999999999999999999865

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.97  E-value=1.4e-31  Score=297.11  Aligned_cols=250  Identities=14%  Similarity=0.103  Sum_probs=182.0

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      ..|.+.+.++  |.|.||++....    .+..++.|++......  .......++..++...+|||++.++.........
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   84 (279)
T 3fdn_A            9 EDFEIGRPLGKGKFGNVYLAREKQ----SKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRV   84 (279)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETT----TCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             ccEEEeeEEecCCCeEEEEEEEcc----CCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEE
Confidence            3555555554  789999997632    2445555554221111  1122344566677888999999877665433222


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      +                ++|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+||+++.++.
T Consensus        85 ~----------------lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~  147 (279)
T 3fdn_A           85 Y----------------LILEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGE  147 (279)
T ss_dssp             E----------------EEECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSC
T ss_pred             E----------------EEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCC
Confidence            2                3899999999999997764 4777799999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||++......                                                                 
T Consensus       148 ~~l~Dfg~~~~~~~~-----------------------------------------------------------------  162 (279)
T 3fdn_A          148 LKIADFGWSVHAPSS-----------------------------------------------------------------  162 (279)
T ss_dssp             EEECSCCEESCC--------------------------------------------------------------------
T ss_pred             EEEEeccccccCCcc-----------------------------------------------------------------
Confidence            999999987543210                                                                 


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                              ......||+.|+|||.+.+..++.++|||||||++|||++
T Consensus       163 ----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  202 (279)
T 3fdn_A          163 ----------------------------------------RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV  202 (279)
T ss_dssp             ---------------------------------------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHH
Confidence                                                    0013468999999999999999999999999999999998


Q ss_pred             C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          528 R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      +   |.................  +.....++.+.+|+.+||++||.+|||+.|+|+||||....
T Consensus       203 g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~~~  265 (279)
T 3fdn_A          203 GKPPFEANTYQETYKRISRVEF--TFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANS  265 (279)
T ss_dssp             SSCTTCCSSHHHHHHHHHHTCC--CCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHHHC
T ss_pred             CCCCCCCCcHHHHHHHHHhCCC--CCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCccccCCc
Confidence            6   443322222222111111  11223478899999999999999999999999999998754

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=302.01  Aligned_cols=247  Identities=16%  Similarity=0.205  Sum_probs=177.7

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchh-hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|.||++...+    .+..++.|++........ .....++...+...+|||++.++.........+           
T Consensus        14 G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   78 (311)
T 4agu_A           14 GSYGVVFKCRNRD----TGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLH-----------   78 (311)
T ss_dssp             CSSEEEEEEEETT----TCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE-----------
T ss_pred             cCCeEEEEEEeCC----CCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEE-----------
Confidence            4789999998632    245566665533332222 233456777788889999998877655433322           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|||++|++|.++++..+ .++...+..++.||+.||.|||++||+||||||+||+++.++.+||+|||+++..
T Consensus        79 -----lv~e~~~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  152 (311)
T 4agu_A           79 -----LVFEYCDHTVLHELDRYQR-GVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLL  152 (311)
T ss_dssp             -----EEEECCSEEHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             -----EEEEeCCCchHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhc
Confidence                 3899999999999987654 4777799999999999999999999999999999999999999999999998764


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ....                                                                            
T Consensus       153 ~~~~----------------------------------------------------------------------------  156 (311)
T 4agu_A          153 TGPS----------------------------------------------------------------------------  156 (311)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCcc----------------------------------------------------------------------------
Confidence            3100                                                                            


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                 ......+||++|+|||.+.+ ..++.++|||||||++|||+++   |.+....
T Consensus       157 ---------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  209 (311)
T 4agu_A          157 ---------------------------DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDV  209 (311)
T ss_dssp             ------------------------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             ---------------------------cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH
Confidence                                       00114578999999999987 6789999999999999999986   4433222


Q ss_pred             HHHH--Hhccc------------------cCCCC---------CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          536 AAAM--SDLRD------------------RILPP---------SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       536 ~~~~--~~~~~------------------~~~p~---------~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      ....  .....                  ...|.         .+...++.+.+|+.+||++||.+|||++|+|+||||.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~  289 (311)
T 4agu_A          210 DQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFE  289 (311)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGGGT
T ss_pred             HHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcChHHH
Confidence            2211  11100                  01111         1245677889999999999999999999999999998


Q ss_pred             hhhcc
Q 001366          587 EFQEV  591 (1092)
Q Consensus       587 ~~~~~  591 (1092)
                      ..++.
T Consensus       290 ~~~~~  294 (311)
T 4agu_A          290 NIREI  294 (311)
T ss_dssp             TCC--
T ss_pred             hccCH
Confidence            76443

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.97  E-value=1.8e-31  Score=308.42  Aligned_cols=261  Identities=16%  Similarity=0.186  Sum_probs=184.4

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||++...    ..+..++.|+..............++..++...+||||+.+++.........   
T Consensus        29 y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~---  101 (364)
T 3qyz_A           29 YTNLSYIGEGAYGMVCSAYDN----LNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQ---  101 (364)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTT---
T ss_pred             EEEEEEeecCCCeEEEEEEEC----CCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccc---
Confidence            4444444  478999999652    1245566666543333333345567778888899999998766544222111   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                       ...       ..++|+|++| +|.++++..  .++..+++.|+.||+.||+|||++||+||||||+|||++.++.+||+
T Consensus       102 -~~~-------~~iv~e~~~~-~L~~~l~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~  170 (364)
T 3qyz_A          102 -MKD-------VYIVQDLMET-DLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKIC  170 (364)
T ss_dssp             -CCC-------EEEEEECCSE-EHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEEC
T ss_pred             -cce-------EEEEEcccCc-CHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEE
Confidence             000       1237888885 999999765  47888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.......                                                                   
T Consensus       171 Dfg~a~~~~~~~~-------------------------------------------------------------------  183 (364)
T 3qyz_A          171 DFGLARVADPDHD-------------------------------------------------------------------  183 (364)
T ss_dssp             CCTTCEECCGGGC-------------------------------------------------------------------
T ss_pred             eCcceEecCCCCC-------------------------------------------------------------------
Confidence            9999876441100                                                                   


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                       .....+..+||++|+|||++.+ ..++.++|||||||+||||+++  
T Consensus       184 ---------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~  230 (364)
T 3qyz_A          184 ---------------------------------HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRP  230 (364)
T ss_dssp             ---------------------------------BCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSC
T ss_pred             ---------------------------------ccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCC
Confidence                                             0011225689999999998765 4589999999999999999985  


Q ss_pred             -CCcHHHHHHHHHhcc--cc-------------------CCC--------CCCCCCChhHHHHHHhccccCCCCCCCHHH
Q 001366          529 -FDSERALAAAMSDLR--DR-------------------ILP--------PSFLSENPKEAGFCLWQLHPEPLSRPTTRE  578 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~--~~-------------------~~p--------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e  578 (1092)
                       |.+............  ..                   .++        ..+...++.+.+|+.+||.+||.+|||+.|
T Consensus       231 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e  310 (364)
T 3qyz_A          231 IFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQ  310 (364)
T ss_dssp             SSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             CCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHH
Confidence             443321111111100  00                   000        112456788999999999999999999999


Q ss_pred             Hhhhhhhhhhhccc
Q 001366          579 ILQSEVTNEFQEVC  592 (1092)
Q Consensus       579 iL~~~~~~~~~~~~  592 (1092)
                      +|+||||.......
T Consensus       311 ~l~hp~~~~~~~~~  324 (364)
T 3qyz_A          311 ALAHPYLEQYYDPS  324 (364)
T ss_dssp             HHTSGGGTTTCCGG
T ss_pred             HhcCcchhhccCcc
Confidence            99999998764433

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.97  E-value=2.4e-31  Score=296.87  Aligned_cols=247  Identities=15%  Similarity=0.089  Sum_probs=181.2

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      -..+|.|.||+|....    .+..++.|++..... ........++..++...+|||++.+++.........     ...
T Consensus        34 lg~G~~g~Vy~~~~~~----~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~-----~~~  104 (290)
T 1t4h_A           34 IGRGSFKTVYKGLDTE----TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGK-----KCI  104 (290)
T ss_dssp             EEECSSEEEEEEEETT----TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSC-----EEE
T ss_pred             ccCCCCeEEEEeEecC----CceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCC-----ceE
Confidence            3456889999997632    244455555433222 222334456677788889999998776533211100     001


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcC--ccccCCCCCCeEEc-cCCcEEEecc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQG--VTFLDLKPSSFKLL-QSNQVKYIGP  373 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~g--IvHrDLKP~Nill~-~~~~vkl~Df  373 (1092)
                             .++|||++|++|.+++...+ .++...++.|+.||+.||.|||++|  |+||||||+||+++ .++.+||+||
T Consensus       105 -------~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Df  176 (290)
T 1t4h_A          105 -------VLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDL  176 (290)
T ss_dssp             -------EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCT
T ss_pred             -------EEEEEecCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeC
Confidence                   13899999999999997754 4777799999999999999999999  99999999999998 7899999999


Q ss_pred             cccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCC
Q 001366          374 IIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPH  453 (1092)
Q Consensus       374 g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  453 (1092)
                      |++......                                                                       
T Consensus       177 g~~~~~~~~-----------------------------------------------------------------------  185 (290)
T 1t4h_A          177 GLATLKRAS-----------------------------------------------------------------------  185 (290)
T ss_dssp             TGGGGCCTT-----------------------------------------------------------------------
T ss_pred             CCccccccc-----------------------------------------------------------------------
Confidence            988543200                                                                       


Q ss_pred             CCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CC
Q 001366          454 SHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                        ......||+.|+|||.+.+ .++.++|||||||++|+|+++   |.
T Consensus       186 ----------------------------------~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~  230 (290)
T 1t4h_A          186 ----------------------------------FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYS  230 (290)
T ss_dssp             ----------------------------------SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ----------------------------------ccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCC
Confidence                                              0013468999999998874 599999999999999999985   44


Q ss_pred             cHHHHHHHHHhccccCCCCCC-CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          531 SERALAAAMSDLRDRILPPSF-LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       531 ~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ...........+.....++.+ ...++.+.+|+.+||++||.+|||+.|+|+||||++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~f~~  288 (290)
T 1t4h_A          231 ECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             TCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             CcCcHHHHHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhhCccccc
Confidence            433344444444444444333 334578999999999999999999999999999976

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=7.9e-29  Score=283.26  Aligned_cols=248  Identities=15%  Similarity=0.181  Sum_probs=215.1

Q ss_pred             cCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc--eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 001366          826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ--TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE  903 (1092)
Q Consensus       826 ~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~--~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~  903 (1092)
                      .|..+|.+++|+|+ +++|++++.|+.|++||+.+++  .+..+.+|...|.+++|+| ++.+|++++.|+.|++||+.+
T Consensus         6 ~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            6 FLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             SCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEET
T ss_pred             ccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCC
Confidence            47899999999998 8999999999999999999987  8889999999999999999 899999999999999999998


Q ss_pred             CceeeeE---ecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc---ceEEecCCCCCeEEEEEc-CCCEEEEEEC
Q 001366          904 KNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA---PWCVLAGHEKAVSYVKFL-DSGTLVTAST  976 (1092)
Q Consensus       904 ~~~l~~l---~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~---~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~  976 (1092)
                      ++....+   .+...|.+++|+|++. +|++|+.|+.|++||++....   ......+|...|.+++|+ ++.+|++++.
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            8755544   3678899999999985 899999999999999997653   223346789999999999 6678999999


Q ss_pred             CCeEEEEEcCCCCCCC----------CCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeec
Q 001366          977 DNKLKLWDLKRTSHTG----------PSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKF 1046 (1092)
Q Consensus       977 Dg~I~vWDl~~~~~~~----------~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~ 1046 (1092)
                      |+.|++||++......          ...+.++..+.+|...|++++|+|++.+|++|+.|+.|++||+..++++..+. 
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-  241 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-  241 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc-
Confidence            9999999976321110          12456788888999999999999999999999999999999999888776653 


Q ss_pred             cccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1047 GSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1047 ~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                                   .|...|.+++|+|++.+|++| .||.|++|++
T Consensus       242 -------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~  272 (372)
T 1k8k_C          242 -------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTY  272 (372)
T ss_dssp             -------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred             -------------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence                         456789999999999988887 8999999986

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.97  E-value=9.5e-32  Score=325.81  Aligned_cols=243  Identities=16%  Similarity=0.213  Sum_probs=182.8

Q ss_pred             cccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      +|.|.||++...    ..+..++.|+......  ........++..++...+||||+.++.....+...+          
T Consensus       195 G~fG~Vy~a~~~----~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~----------  260 (576)
T 2acx_A          195 GGFGEVCACQVR----ATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALC----------  260 (576)
T ss_dssp             ETTEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE----------
T ss_pred             CCCEEEEEEEEC----CCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEE----------
Confidence            478999999763    2356666666532111  112233455667788889999998876655443333          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                            .+|||++||+|.++|...+ ..+++..++.|+.||+.||+|||++||+||||||+||||+.++.+||+|||+++
T Consensus       261 ------lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~  334 (576)
T 2acx_A          261 ------LVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAV  334 (576)
T ss_dssp             ------EEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             ------EEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccce
Confidence                  3899999999999997654 348888999999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .....                                                                           
T Consensus       335 ~~~~~---------------------------------------------------------------------------  339 (576)
T 2acx_A          335 HVPEG---------------------------------------------------------------------------  339 (576)
T ss_dssp             ECCTT---------------------------------------------------------------------------
T ss_pred             ecccC---------------------------------------------------------------------------
Confidence            64310                                                                           


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH-
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER-  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~-  533 (1092)
                                                   ......+||+.|+|||++.+..++.++|||||||+||||++|   |.... 
T Consensus       340 -----------------------------~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~  390 (576)
T 2acx_A          340 -----------------------------QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKK  390 (576)
T ss_dssp             -----------------------------CCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSS
T ss_pred             -----------------------------ccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCccccc
Confidence                                         001245799999999999999999999999999999999986   44321 


Q ss_pred             --HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          534 --ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       534 --~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                        ........+.... +......++.+.+||.+||++||.+||     ++.||++||||...
T Consensus       391 ~~~~~~i~~~i~~~~-~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~i  451 (576)
T 2acx_A          391 KIKREEVERLVKEVP-EEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKL  451 (576)
T ss_dssp             CCCHHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTTC
T ss_pred             chhHHHHHHHhhccc-ccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChhhccC
Confidence              1112222222111 111234578999999999999999999     78999999999864

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.97  E-value=8.8e-32  Score=306.74  Aligned_cols=254  Identities=14%  Similarity=0.160  Sum_probs=184.0

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchh-hHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD-AALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      +..|.+...++  |.|.||++...+    .+..++.|++........ .....++..++...+|||++.+++........
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   99 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKD----TGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRW   99 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETT----TCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECC----CCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEE
Confidence            44566555554  789999998632    345566666543333322 23345677778888999999887765543333


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      +                ++|||++|++|.+++...+ .++...++.++.||+.||+|||++||+||||||+||+++.++.
T Consensus       100 ~----------------lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~  162 (331)
T 4aaa_A          100 Y----------------LVFEFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGV  162 (331)
T ss_dssp             E----------------EEEECCSEEHHHHHHHSTT-CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSC
T ss_pred             E----------------EEEecCCcchHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCc
Confidence            3                3899999999999876554 4788899999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||+++......                                                                
T Consensus       163 ~kl~Dfg~~~~~~~~~----------------------------------------------------------------  178 (331)
T 4aaa_A          163 VKLCDFGFARTLAAPG----------------------------------------------------------------  178 (331)
T ss_dssp             EEECCCTTC-----------------------------------------------------------------------
T ss_pred             EEEEeCCCceeecCCc----------------------------------------------------------------
Confidence            9999999987643100                                                                


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHc
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell  526 (1092)
                                                             .......||++|+|||.+.+. .++.++|||||||+||||+
T Consensus       179 ---------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~  219 (331)
T 4aaa_A          179 ---------------------------------------EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMF  219 (331)
T ss_dssp             --------------------------------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHH
Confidence                                                   001145689999999999875 7899999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhcc--c------------------cCCC---------CCCCCCChhHHHHHHhccccCCCCCC
Q 001366          527 GR---FDSERALAAAMSDLR--D------------------RILP---------PSFLSENPKEAGFCLWQLHPEPLSRP  574 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~--~------------------~~~p---------~~~~~~~~~~~~li~~lL~~dP~~Rp  574 (1092)
                      ++   |..............  .                  ..+|         ..+...++.+.+|+.+||++||.+||
T Consensus       220 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp  299 (331)
T 4aaa_A          220 MGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRP  299 (331)
T ss_dssp             HSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             hCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCC
Confidence            85   544433222211110  0                  0111         01234578899999999999999999


Q ss_pred             CHHHHhhhhhhhhh
Q 001366          575 TTREILQSEVTNEF  588 (1092)
Q Consensus       575 sa~eiL~~~~~~~~  588 (1092)
                      |+.|+|+||||...
T Consensus       300 t~~ell~hp~f~~~  313 (331)
T 4aaa_A          300 FCAELLHHDFFQMD  313 (331)
T ss_dssp             CGGGGGGSHHHHGG
T ss_pred             CHHHHhcCchhccC
Confidence            99999999999764

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=1.2e-31  Score=306.93  Aligned_cols=258  Identities=17%  Similarity=0.206  Sum_probs=182.7

Q ss_pred             HHHhhhcc--ccceeeeCCCCCcccccccccccccccccc----CchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT----MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      |.+.+.++  |.|+||++...    ..+..++.|++....    .........++..++...+||||+.+++....+...
T Consensus        28 y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~  103 (345)
T 3hko_A           28 YHLKGAIGQGSYGVVRVAIEN----QTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYI  103 (345)
T ss_dssp             EEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             eeecceeeecCCeEEEEEEEC----CCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeE
Confidence            44544443  78999999652    224455555542211    112233445567778888999999987775533322


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhc---------------------------------------CCCCCH
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNAR---------------------------------------GHKGKR  328 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~---------------------------------------~~~~~~  328 (1092)
                      +                ++||||+|++|.++|...                                       ...++.
T Consensus       104 ~----------------lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (345)
T 3hko_A          104 C----------------LVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQRE  167 (345)
T ss_dssp             E----------------EEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHH
T ss_pred             E----------------EEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccH
Confidence            2                389999999999999521                                       112345


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC--cEEEecccccccccccccCCCCCCchhhhhcccccccccc
Q 001366          329 IECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN--QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFT  406 (1092)
Q Consensus       329 ~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~--~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  406 (1092)
                      ..++.|+.||+.||+|||++||+||||||+||+++.++  .+||+|||+++.+......                     
T Consensus       168 ~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~---------------------  226 (345)
T 3hko_A          168 KLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNG---------------------  226 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCcc---------------------
Confidence            67889999999999999999999999999999998776  8999999998765421000                     


Q ss_pred             ccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccc
Q 001366          407 TGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQS  486 (1092)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (1092)
                                                                                                    ..
T Consensus       227 ------------------------------------------------------------------------------~~  228 (345)
T 3hko_A          227 ------------------------------------------------------------------------------EY  228 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          00


Q ss_pred             cccccccccccccCcccccC--CCCCccccchhhhHHHHHHcCC---CCcHHHHHHHHHhccccC--CCCCCCCCChhHH
Q 001366          487 TSVSEQLEEKWYASPEELSG--GVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRI--LPPSFLSENPKEA  559 (1092)
Q Consensus       487 ~~~~~~~gt~~Y~aPE~l~~--~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~  559 (1092)
                      .......||+.|+|||++.+  ..++.++|||||||+||||+++   |............+....  ..+.+...++.+.
T Consensus       229 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (345)
T 3hko_A          229 YGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLAR  308 (345)
T ss_dssp             ------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHH
T ss_pred             ccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHhcccccCCcccccCCHHHH
Confidence            01125578999999999976  6789999999999999999985   544333333333333222  2233445688999


Q ss_pred             HHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          560 GFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       560 ~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      +|+.+||.+||.+||++.++|+||||.+..+
T Consensus       309 ~li~~~l~~~p~~Rps~~~~l~hp~~~~~~~  339 (345)
T 3hko_A          309 DLLSNLLNRNVDERFDAMRALQHPWISQFSD  339 (345)
T ss_dssp             HHHHHHSCSCTTTSCCHHHHHHSHHHHTTSS
T ss_pred             HHHHHHcCCChhHCCCHHHHhcChhhccChH
Confidence            9999999999999999999999999987643

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.97  E-value=2e-31  Score=301.20  Aligned_cols=252  Identities=15%  Similarity=0.124  Sum_probs=179.4

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      .+..|.+.+.++  |.|.||++...      +..++.|++....... ......++..++...+|||++.++........
T Consensus        35 ~~~~y~i~~~lG~G~~g~V~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  108 (309)
T 3p86_A           35 PWCDLNIKEKIGAGSFGTVHRAEWH------GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPN  108 (309)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET------TEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTC
T ss_pred             ChhHceeeeEeecCCCeEEEEEEEC------CCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCc
Confidence            345666666555  78999999652      3456666654433222 22344567777888899999988776543332


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHhhhcC--ccccCCCCCCeEE
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH--KGKRIECLYIFRQIVALVDYHHTQG--VTFLDLKPSSFKL  362 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~--~~~~~~~~~i~~qil~~l~~lHs~g--IvHrDLKP~Nill  362 (1092)
                      .+                ++|||++|++|.+++...+.  .++..+++.++.||+.||+|||++|  |+||||||+|||+
T Consensus       109 ~~----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll  172 (309)
T 3p86_A          109 LS----------------IVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLV  172 (309)
T ss_dssp             CE----------------EEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEE
T ss_pred             eE----------------EEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEE
Confidence            22                38999999999999976542  3788899999999999999999999  9999999999999


Q ss_pred             ccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccC
Q 001366          363 LQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN  442 (1092)
Q Consensus       363 ~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1092)
                      +.++.+||+|||+++......                                                           
T Consensus       173 ~~~~~~kL~Dfg~a~~~~~~~-----------------------------------------------------------  193 (309)
T 3p86_A          173 DKKYTVKVCDFGLSRLKASTF-----------------------------------------------------------  193 (309)
T ss_dssp             CTTCCEEECCCC--------------------------------------------------------------------
T ss_pred             eCCCcEEECCCCCCccccccc-----------------------------------------------------------
Confidence            999999999999987533100                                                           


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHH
Q 001366          443 ESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLF  522 (1092)
Q Consensus       443 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll  522 (1092)
                                                                  .......||+.|+|||++.+..++.++|||||||+|
T Consensus       194 --------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il  229 (309)
T 3p86_A          194 --------------------------------------------LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVIL  229 (309)
T ss_dssp             ----------------------------------------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHH
T ss_pred             --------------------------------------------cccccCCCCccccChhhhcCCCCCchhhHHHHHHHH
Confidence                                                        001145789999999999999999999999999999


Q ss_pred             HHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh--hhhhh
Q 001366          523 FELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ--SEVTN  586 (1092)
Q Consensus       523 ~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~--~~~~~  586 (1092)
                      |||+++   |..................++.....++.+.+|+.+||+.||.+|||+.+|++  .+++.
T Consensus       230 ~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~  298 (309)
T 3p86_A          230 WELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIK  298 (309)
T ss_dssp             HHHHHCCCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            999985   44333222222221122222233455789999999999999999999999998  34544

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.97  E-value=1.7e-31  Score=315.62  Aligned_cols=248  Identities=16%  Similarity=0.112  Sum_probs=172.8

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhc---cCCCCCCCccccceecCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVA---SNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      |.+.+.+  +|.|.||++....    .+..++.|+........ .....++....+.   ...|+|++.++.........
T Consensus        99 y~~~~~LG~G~fg~V~~a~~~~----~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  174 (429)
T 3kvw_A           99 YEVLKVIGKGSFGQVVKAYDHK----VHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI  174 (429)
T ss_dssp             EEEEEEEEESSSEEEEEEEETT----TTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred             EEEEEEcccCccEEEEEEEECC----CCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence            4444444  4789999996522    24566666653321111 1111122222222   23677888776665543333


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      +                .+|||+. ++|.+++.... ..++...++.|+.||+.||+|||++||+||||||+||||+.++
T Consensus       175 ~----------------lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~  237 (429)
T 3kvw_A          175 C----------------MTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQG  237 (429)
T ss_dssp             E----------------EEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTT
T ss_pred             E----------------EEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCC
Confidence            3                3788886 59999997654 3488889999999999999999999999999999999999988


Q ss_pred             c--EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          367 Q--VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       367 ~--vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      .  +||+|||+++....                                                               
T Consensus       238 ~~~vkL~DFG~a~~~~~---------------------------------------------------------------  254 (429)
T 3kvw_A          238 RSGIKVIDFGSSCYEHQ---------------------------------------------------------------  254 (429)
T ss_dssp             SCCEEECCCTTCEETTC---------------------------------------------------------------
T ss_pred             CcceEEeecccceecCC---------------------------------------------------------------
Confidence            7  99999998865320                                                               


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~e  524 (1092)
                                                                 .....+||++|+|||++.+..++.++|||||||+|||
T Consensus       255 -------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~e  291 (429)
T 3kvw_A          255 -------------------------------------------RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAE  291 (429)
T ss_dssp             -------------------------------------------CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHH
T ss_pred             -------------------------------------------cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHH
Confidence                                                       0114578999999999999999999999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhccccCCC-------------------------------------------------CC--
Q 001366          525 LFGR---FDSERALAAAMSDLRDRILP-------------------------------------------------PS--  550 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~~~~~~p-------------------------------------------------~~--  550 (1092)
                      |+++   |.+................|                                                 +.  
T Consensus       292 lltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (429)
T 3kvw_A          292 LLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESR  371 (429)
T ss_dssp             HHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCS
T ss_pred             HHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCcccccccccccccccccccccchhhccCCccch
Confidence            9986   44433322221111100000                                                 00  


Q ss_pred             ------CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          551 ------FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       551 ------~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                            ....++.+.+||.+||++||.+|||+.|+|+||||...
T Consensus       372 ~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~  415 (429)
T 3kvw_A          372 EWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRR  415 (429)
T ss_dssp             CHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC--
T ss_pred             hhHhhccccchHHHHHHHHHHCCCChhhCCCHHHHhCChhhccC
Confidence                  01236778999999999999999999999999999875

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.97  E-value=3.4e-31  Score=301.37  Aligned_cols=253  Identities=13%  Similarity=0.127  Sum_probs=183.3

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      ..|.+.+.++  |.|.||+|.....-. .+..++.|+..............++..++...+||||+.++.........+ 
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-  126 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQ-RDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAM-  126 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTS-CCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCE-
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCC-CCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccE-
Confidence            3455555554  789999998632100 122355555533222333344566777888889999998777644322222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     ++|||++|++|.++++.....++..+++.|+.||+.||.|||++||+||||||+|||++.++.+|
T Consensus       127 ---------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~k  191 (325)
T 3kul_A          127 ---------------IVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCK  191 (325)
T ss_dssp             ---------------EEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEE
T ss_pred             ---------------EEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEE
Confidence                           38999999999999987766788889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++........                                                                
T Consensus       192 l~Dfg~a~~~~~~~~~----------------------------------------------------------------  207 (325)
T 3kul_A          192 VSDFGLSRVLEDDPDA----------------------------------------------------------------  207 (325)
T ss_dssp             ECCCSSCEECC----C----------------------------------------------------------------
T ss_pred             ECCCCcccccccCccc----------------------------------------------------------------
Confidence            9999999875421000                                                                


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~  528 (1092)
                                                          ........+|+.|+|||++.+..++.++|||||||+||||++ +
T Consensus       208 ------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g  251 (325)
T 3kul_A          208 ------------------------------------AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYG  251 (325)
T ss_dssp             ------------------------------------CEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTS
T ss_pred             ------------------------------------eeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCC
Confidence                                                000113356788999999998999999999999999999998 5


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                         |....... ....+.....++.....++.+.+|+.+||+.||.+|||+.+|++.
T Consensus       252 ~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~  307 (325)
T 3kul_A          252 ERPYWNMTNRD-VISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSV  307 (325)
T ss_dssp             CCTTTTSCHHH-HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCcccCCHHH-HHHHHHcCCCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence               33322222 222233333334445668889999999999999999999999874

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.97  E-value=1.7e-31  Score=304.08  Aligned_cols=250  Identities=16%  Similarity=0.065  Sum_probs=176.3

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||+|.....-......++.|...............++..++...+|||++.++.........    
T Consensus        17 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~----   92 (327)
T 3poz_A           17 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ----   92 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEE----
T ss_pred             cccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeE----
Confidence            4444433  4899999997522100001112333332222222334455667778888999999887765432211    


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+++|+.+++|.+++......++..+++.|+.||+.||.|||++||+||||||+|||++.++.+||+
T Consensus        93 -------------~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~  159 (327)
T 3poz_A           93 -------------LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKIT  159 (327)
T ss_dssp             -------------EEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEEC
T ss_pred             -------------EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEc
Confidence                         2799999999999998877778888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.......                                                                   
T Consensus       160 Dfg~a~~~~~~~~-------------------------------------------------------------------  172 (327)
T 3poz_A          160 DFGLAKLLGAEEK-------------------------------------------------------------------  172 (327)
T ss_dssp             CTTHHHHHTTTCC-------------------------------------------------------------------
T ss_pred             cCcceeEccCCcc-------------------------------------------------------------------
Confidence            9999987541100                                                                   


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~--  528 (1092)
                                                        ........||..|+|||++.+..++.++|||||||+||||++ +  
T Consensus       173 ----------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~  218 (327)
T 3poz_A          173 ----------------------------------EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSK  218 (327)
T ss_dssp             -----------------------------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ----------------------------------cccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCC
Confidence                                              000113456888999999999999999999999999999998 5  


Q ss_pred             -CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 -FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       |..... ......+.....++.....++.+..|+.+||+.||.+||++.+++++
T Consensus       219 p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  272 (327)
T 3poz_A          219 PYDGIPA-SEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             TTTTCCG-GGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHH
T ss_pred             CccCCCH-HHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence             332211 11122222222333444567889999999999999999999999986

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.97  E-value=9.1e-32  Score=317.12  Aligned_cols=249  Identities=18%  Similarity=0.189  Sum_probs=175.1

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCc-------hhhHhhhhhhhhhccCCCCCCCccccceecC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-------SDAALKAAGAMMVASNASPKPVGVGTAVVSN  284 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (1092)
                      |.+.+.+  +|.|.||++....    .+..++.|+.......       .......++..++...+||||+.++.....+
T Consensus       137 y~~~~~LG~G~~g~V~~a~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~  212 (419)
T 3i6u_A          137 YIMSKTLGSGACGEVKLAFERK----TCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE  212 (419)
T ss_dssp             EEEEEEEEECSSSEEEEEEETT----TCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS
T ss_pred             EEEEeEEeeCCCeEEEEEEECC----CCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC
Confidence            4444444  4789999997532    2455666654322110       1111234566778888999999876653211


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                      . .                ..+|||++|++|.+++...+ .++..+++.|+.||+.||+|||++||+||||||+||||+.
T Consensus       213 ~-~----------------~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~  274 (419)
T 3i6u_A          213 D-Y----------------YIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSS  274 (419)
T ss_dssp             E-E----------------EEEEECCTTCBGGGGTSSSC-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESS
T ss_pred             c-e----------------EEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEec
Confidence            1 1                13899999999999997654 5778899999999999999999999999999999999976


Q ss_pred             CC---cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          365 SN---QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       365 ~~---~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      .+   .+||+|||+++.....                                                           
T Consensus       275 ~~~~~~~kl~DFG~a~~~~~~-----------------------------------------------------------  295 (419)
T 3i6u_A          275 QEEDCLIKITDFGHSKILGET-----------------------------------------------------------  295 (419)
T ss_dssp             SSSSCCEEECCSSTTTSCC-------------------------------------------------------------
T ss_pred             CCCcceEEEeecccceecCCC-----------------------------------------------------------
Confidence            54   4999999998764310                                                           


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC---CCCCccccchhh
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG---GVCTTSSNIYSL  518 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~---~~~t~~sDIwSL  518 (1092)
                                                                   ......+||+.|+|||++.+   ..++.++|||||
T Consensus       296 ---------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Diwsl  330 (419)
T 3i6u_A          296 ---------------------------------------------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSL  330 (419)
T ss_dssp             ------------------------------------------------------CTTCCTTTTC----CTTHHHHHHHHH
T ss_pred             ---------------------------------------------ccccccCCCCCccCceeeecCCCCCCCchhhhHhH
Confidence                                                         00114579999999999864   668899999999


Q ss_pred             hHHHHHHcCC---CCcHHH---HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          519 GVLFFELFGR---FDSERA---LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       519 Gvll~ell~~---f~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ||+||||+++   |.....   ....+........|+.+...++.+.+|+.+||++||.+|||+.|+|+||||.+.
T Consensus       331 G~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~  406 (419)
T 3i6u_A          331 GVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDE  406 (419)
T ss_dssp             HHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCCH
T ss_pred             HHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCCcccCCh
Confidence            9999999986   432211   222222222222333445678899999999999999999999999999999764

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.97  E-value=2.2e-31  Score=306.47  Aligned_cols=254  Identities=15%  Similarity=0.117  Sum_probs=180.9

Q ss_pred             HHHhhhc--cccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.+  +|.|+||++...+. ....+..++.|+..............++...+... .||||+.++.........  
T Consensus        24 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~--  101 (359)
T 3vhe_A           24 LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP--  101 (359)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSC--
T ss_pred             eeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCc--
Confidence            4444444  58999999963110 01224566666654333333333445555556666 789999877764432211  


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCC---------------------------------------------
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH---------------------------------------------  324 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~---------------------------------------------  324 (1092)
                                   ..++||||+||+|.++|.....                                             
T Consensus       102 -------------~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (359)
T 3vhe_A          102 -------------LMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFV  168 (359)
T ss_dssp             -------------CEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------
T ss_pred             -------------eEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccc
Confidence                         1137999999999999976532                                             


Q ss_pred             --------------------CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccccccc
Q 001366          325 --------------------KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESAS  384 (1092)
Q Consensus       325 --------------------~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~  384 (1092)
                                          .++..+++.|+.||+.||.|||++||+||||||+||||+.++.+||+|||+++.+.....
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~  248 (359)
T 3vhe_A          169 EEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD  248 (359)
T ss_dssp             ---------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred             cccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence                                178889999999999999999999999999999999999999999999999876431000


Q ss_pred             CCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccccccc
Q 001366          385 LDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTN  464 (1092)
Q Consensus       385 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  464 (1092)
                                                                                                      
T Consensus       249 --------------------------------------------------------------------------------  248 (359)
T 3vhe_A          249 --------------------------------------------------------------------------------  248 (359)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHHHHHHH
Q 001366          465 AGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERALAAAMS  540 (1092)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~~~~~  540 (1092)
                                           ........||+.|+|||++.+..++.++|||||||+||||++ +   |...........
T Consensus       249 ---------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~  307 (359)
T 3vhe_A          249 ---------------------YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR  307 (359)
T ss_dssp             ---------------------CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHH
T ss_pred             ---------------------chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHH
Confidence                                 000114568899999999999999999999999999999997 5   433222222333


Q ss_pred             hccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          541 DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       541 ~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      .+.....++.....++.+.+|+.+||++||.+|||+.|+++|-
T Consensus       308 ~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  350 (359)
T 3vhe_A          308 RLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  350 (359)
T ss_dssp             HHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence            3333333333445678999999999999999999999999873

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.97  E-value=3.7e-31  Score=297.26  Aligned_cols=242  Identities=16%  Similarity=0.138  Sum_probs=183.7

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|.||+|...    ..+..++.|++.............++..++....|||++.++.....+...+            
T Consensus        33 G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~------------   96 (303)
T 3a7i_A           33 GSFGEVFKGIDN----RTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLW------------   96 (303)
T ss_dssp             CSSSEEEEEEET----TTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE------------
T ss_pred             cCCeEEEEEEEC----CCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEE------------
Confidence            478999999642    1245566666544333333445556667788889999998777655433322            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          ++|||++|++|.+++...  .++..+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++...
T Consensus        97 ----lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~  170 (303)
T 3a7i_A           97 ----IIMEYLGGGSALDLLEPG--PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT  170 (303)
T ss_dssp             ----EEEECCTTEEHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECB
T ss_pred             ----EEEEeCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecC
Confidence                389999999999999753  57888999999999999999999999999999999999999999999999887644


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ...                                                                             
T Consensus       171 ~~~-----------------------------------------------------------------------------  173 (303)
T 3a7i_A          171 DTQ-----------------------------------------------------------------------------  173 (303)
T ss_dssp             TTB-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAA  537 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~  537 (1092)
                                                .......||+.|+|||.+.+..++.++|||||||+||||+++   |........
T Consensus       174 --------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~  227 (303)
T 3a7i_A          174 --------------------------IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKV  227 (303)
T ss_dssp             --------------------------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH
T ss_pred             --------------------------cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHH
Confidence                                      001145689999999999999999999999999999999986   332222221


Q ss_pred             HHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          538 AMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       538 ~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      . ..+.....+......++.+.+|+.+||++||.+|||+.++|+||||...
T Consensus       228 ~-~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~  277 (303)
T 3a7i_A          228 L-FLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRN  277 (303)
T ss_dssp             H-HHHHHSCCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHHHHHH
T ss_pred             H-HHhhcCCCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhChhhhcC
Confidence            1 1222222233334557889999999999999999999999999999764

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.97  E-value=3.4e-31  Score=300.60  Aligned_cols=257  Identities=14%  Similarity=0.100  Sum_probs=176.6

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.+  +|.|.||+|....    .+..++.|++.....  ......++...+... .|||++.++.......... 
T Consensus        25 ~y~~~~~lg~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~--~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~-   97 (326)
T 2x7f_A           25 IFELVELVGNGTYGQVYKGRHVK----TGQLAAIKVMDVTGD--EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG-   97 (326)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEECCSS--TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--C-
T ss_pred             cEEEEEEeccCCCEEEEEEEECC----CCCeEEEEEEecCcc--cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcc-
Confidence            34444444  3789999997621    245566666532221  222333444445554 8999998877655432111 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                        ....       ..++|||++|++|.+++... +..++...++.++.||+.||.|||++||+||||||+||+++.++.+
T Consensus        98 --~~~~-------~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~  168 (326)
T 2x7f_A           98 --MDDQ-------LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEV  168 (326)
T ss_dssp             --CCCE-------EEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCE
T ss_pred             --ccce-------EEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCE
Confidence              0011       12489999999999999764 3467888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||++.......                                                                 
T Consensus       169 kl~Dfg~~~~~~~~~-----------------------------------------------------------------  183 (326)
T 2x7f_A          169 KLVDFGVSAQLDRTV-----------------------------------------------------------------  183 (326)
T ss_dssp             EECCCTTTC-----------------------------------------------------------------------
T ss_pred             EEeeCcCceecCcCc-----------------------------------------------------------------
Confidence            999999886643100                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-----CCCCCccccchhhhHHHH
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-----GGVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-----~~~~t~~sDIwSLGvll~  523 (1092)
                                                            .......||+.|+|||++.     +..++.++|||||||+||
T Consensus       184 --------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~  225 (326)
T 2x7f_A          184 --------------------------------------GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAI  225 (326)
T ss_dssp             ---------------------------------------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHH
T ss_pred             --------------------------------------cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHH
Confidence                                                  0011346899999999997     467899999999999999


Q ss_pred             HHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          524 ELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       524 ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ||+++   |.........................++.+.+|+.+||++||.+||++.++|+||||...
T Consensus       226 ~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~hp~~~~~  293 (326)
T 2x7f_A          226 EMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQ  293 (326)
T ss_dssp             HHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTSHHHHCC
T ss_pred             HHHhCCCCCCCCcHHHHHHHhhcCccccCCccccCHHHHHHHHHHhccChhhCCCHHHHhhChHHhhC
Confidence            99986   433333333222222222222234457889999999999999999999999999999764

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.97  E-value=2.6e-31  Score=311.74  Aligned_cols=254  Identities=16%  Similarity=0.147  Sum_probs=168.5

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      -..++.|.||++...+.  ..+..++.|+......   .....++..++...+||||+.++..........         
T Consensus        29 lG~G~~g~Vy~~~~~~~--~~~~~vaiK~~~~~~~---~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~---------   94 (405)
T 3rgf_A           29 VGRGTYGHVYKAKRKDG--KDDKDYALKQIEGTGI---SMSACREIALLRELKHPNVISLQKVFLSHADRK---------   94 (405)
T ss_dssp             CC-----EEEEEEESSS--SCCCCEEEEECSSSSC---CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTE---------
T ss_pred             eeecCCeEEEEEEEccC--CCCeEEEEEEECCCCC---CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCe---------
Confidence            34567899999985321  1245566665533222   223456777888889999998777654211111         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcC--------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE----ccC
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARG--------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL----LQS  365 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~--------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill----~~~  365 (1092)
                           ..++|||++| +|.+++....        ..++..+++.|++||+.||+|||++||+||||||+||||    +..
T Consensus        95 -----~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~  168 (405)
T 3rgf_A           95 -----VWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPER  168 (405)
T ss_dssp             -----EEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTT
T ss_pred             -----EEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCC
Confidence                 0137888875 8988885321        237888999999999999999999999999999999999    677


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++.......                                                             
T Consensus       169 ~~~kl~Dfg~a~~~~~~~~-------------------------------------------------------------  187 (405)
T 3rgf_A          169 GRVKIADMGFARLFNSPLK-------------------------------------------------------------  187 (405)
T ss_dssp             TCEEECCTTCCC--------------------------------------------------------------------
T ss_pred             CcEEEEECCCceecCCCCc-------------------------------------------------------------
Confidence            8999999999976541100                                                             


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~e  524 (1092)
                                                             ........+||++|+|||++.+ ..++.++|||||||+|||
T Consensus       188 ---------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~e  228 (405)
T 3rgf_A          188 ---------------------------------------PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAE  228 (405)
T ss_dssp             ------------------------------------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------ccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHH
Confidence                                                   0011225689999999999988 458999999999999999


Q ss_pred             HcCC---CCcHH------------HHHHHHHhccccCCCC----------------------------------CCCCCC
Q 001366          525 LFGR---FDSER------------ALAAAMSDLRDRILPP----------------------------------SFLSEN  555 (1092)
Q Consensus       525 ll~~---f~~~~------------~~~~~~~~~~~~~~p~----------------------------------~~~~~~  555 (1092)
                      |+++   |.+..            .....+..+ ..+.+.                                  .....+
T Consensus       229 ll~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~-g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (405)
T 3rgf_A          229 LLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVM-GFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPD  307 (405)
T ss_dssp             HHHSSCTTCCCC------CCCCHHHHHHHHHHH-CCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTT
T ss_pred             HHhCCCCCCCccccccccccchHHHHHHHHHhh-CCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCC
Confidence            9986   43221            111111111 100000                                  011226


Q ss_pred             hhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhccc
Q 001366          556 PKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       556 ~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                      +.+.+||.+||++||.+|||+.|+|+||||.+.+.+.
T Consensus       308 ~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f~~~~~~~  344 (405)
T 3rgf_A          308 SKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPT  344 (405)
T ss_dssp             SHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTSSSCCC
T ss_pred             HHHHHHHHHHccCCcccCCCHHHHhcChhhccCCCCc
Confidence            6788999999999999999999999999998765443

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.97  E-value=2.1e-31  Score=298.54  Aligned_cols=258  Identities=13%  Similarity=0.135  Sum_probs=170.9

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.++  |.|.||++....    .+..++.|+..............++...+...+|||++.++.........+   
T Consensus        17 y~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~---   89 (303)
T 2vwi_A           17 YELQEVIGSGATAVVQAAYCAP----KKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELW---   89 (303)
T ss_dssp             CEEEEECC---CCCEEEEEC--------CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEE---
T ss_pred             hhhhheeccccceEEEEEEECC----CCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcE---
Confidence            44444443  679999997621    245566665533322233334456667777889999998876655333222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhh-------cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNA-------RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~-------~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                                   ++|||++|++|.+++..       ....++..+++.++.||+.||.|||++||+||||||+||+++.
T Consensus        90 -------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~  156 (303)
T 2vwi_A           90 -------------LVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGE  156 (303)
T ss_dssp             -------------EEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECT
T ss_pred             -------------EEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcC
Confidence                         38999999999999964       2345788899999999999999999999999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.+||+|||+++........                                                           
T Consensus       157 ~~~~kl~dfg~~~~~~~~~~~-----------------------------------------------------------  177 (303)
T 2vwi_A          157 DGSVQIADFGVSAFLATGGDI-----------------------------------------------------------  177 (303)
T ss_dssp             TCCEEECCCHHHHHCC----------------------------------------------------------------
T ss_pred             CCCEEEEeccchheeccCCCc-----------------------------------------------------------
Confidence            999999999998764411000                                                           


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~  523 (1092)
                                                             ..........||+.|+|||.+.+ ..++.++|||||||+||
T Consensus       178 ---------------------------------------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~  218 (303)
T 2vwi_A          178 ---------------------------------------TRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAI  218 (303)
T ss_dssp             -------------------------------------------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHH
T ss_pred             ---------------------------------------cchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHH
Confidence                                                   00000114578999999999876 56899999999999999


Q ss_pred             HHcCC---CCcHHHHHHHHHhccccC--C------CCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          524 ELFGR---FDSERALAAAMSDLRDRI--L------PPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       524 ell~~---f~~~~~~~~~~~~~~~~~--~------p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ||+++   |.........+..+....  +      +......++.+.+|+.+||++||.+||++.++++||||....
T Consensus       219 ~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  295 (303)
T 2vwi_A          219 ELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFFQKAK  295 (303)
T ss_dssp             HHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTSTTC----
T ss_pred             HHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhChhhhcCC
Confidence            99986   433222222222222111  0      112234567889999999999999999999999999998653

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.97  E-value=2.2e-31  Score=294.40  Aligned_cols=254  Identities=14%  Similarity=0.072  Sum_probs=185.3

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.+.+.+  ++.|.||++...    ..+..++.|+..............++..++...+|||++.++.........+  
T Consensus         8 ~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~--   81 (276)
T 2yex_A            8 DWDLVQTLGEGAYGEVQLAVNR----VTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQY--   81 (276)
T ss_dssp             HEEEEEEEEECSSSEEEEEEET----TTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE--
T ss_pred             ceEEEEEeecCCCcEEEEEEEC----CCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEE--
Confidence            34444444  478999999752    1245566666543333333344556666778889999998776654333222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    ++|||++|++|.+++.... .++..+++.++.||+.||+|||++||+||||||+||+++.++.+|+
T Consensus        82 --------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl  146 (276)
T 2yex_A           82 --------------LFLEYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKI  146 (276)
T ss_dssp             --------------EEEECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEE
T ss_pred             --------------EEEEecCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEE
Confidence                          3899999999999997543 4778899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.......                                                                  
T Consensus       147 ~dfg~~~~~~~~~~------------------------------------------------------------------  160 (276)
T 2yex_A          147 SDFGLATVFRYNNR------------------------------------------------------------------  160 (276)
T ss_dssp             CCCTTCEECEETTE------------------------------------------------------------------
T ss_pred             eeCCCccccCCCcc------------------------------------------------------------------
Confidence            99998876431000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvll~ell~~-  528 (1092)
                                                         ........||+.|+|||.+.+..+ +.++|||||||++|||+++ 
T Consensus       161 -----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~  205 (276)
T 2yex_A          161 -----------------------------------ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE  205 (276)
T ss_dssp             -----------------------------------ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------------------------hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCC
Confidence                                               000124578999999999988665 7899999999999999985 


Q ss_pred             --CCcHHHHHHHHHhc-cccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 --FDSERALAAAMSDL-RDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                        |.........+... ......+.+...++.+.+|+.+||++||.+|||+.|+++||||...
T Consensus       206 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~  268 (276)
T 2yex_A          206 LPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKP  268 (276)
T ss_dssp             CCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred             CCCCCCchHHHHHHHhhhcccccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcCccccCh
Confidence              43322211111111 1122223344567889999999999999999999999999999865

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.97  E-value=3.4e-31  Score=320.12  Aligned_cols=244  Identities=16%  Similarity=0.148  Sum_probs=181.4

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      +|.|.||++...    ..+..++.|+.......  .......++..++...+||+|+.++.........+          
T Consensus       196 G~fG~Vy~a~~~----~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~----------  261 (543)
T 3c4z_A          196 GGFGEVFACQMK----ATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLC----------  261 (543)
T ss_dssp             CSSSEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE----------
T ss_pred             CCCeEEEEEEEC----CCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEE----------
Confidence            478999999762    23556666655322111  11233445666778889999998777655443333          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG---HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~---~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                            .+|||++||+|.++|...+   ..+++..++.|+.||+.||+|||++||+||||||+||||+.+|.+||+|||+
T Consensus       262 ------lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGl  335 (543)
T 3c4z_A          262 ------LVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGL  335 (543)
T ss_dssp             ------EEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTT
T ss_pred             ------EEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecce
Confidence                  3899999999999997643   3588889999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++.+....                                                                        
T Consensus       336 a~~~~~~~------------------------------------------------------------------------  343 (543)
T 3c4z_A          336 AVELKAGQ------------------------------------------------------------------------  343 (543)
T ss_dssp             CEECCTTC------------------------------------------------------------------------
T ss_pred             eeeccCCC------------------------------------------------------------------------
Confidence            87643100                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                     ......+||++|+|||++.+..|+.++|||||||+||||+++   |...
T Consensus       344 -------------------------------~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~  392 (543)
T 3c4z_A          344 -------------------------------TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRAR  392 (543)
T ss_dssp             -------------------------------CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred             -------------------------------cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCC
Confidence                                           001145799999999999999999999999999999999986   5432


Q ss_pred             H---HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          533 R---ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       533 ~---~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      .   ........+.... +......++.+.+||.+||++||.+||+     +.+|++||||...
T Consensus       393 ~~~~~~~~~~~~i~~~~-~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i  455 (543)
T 3c4z_A          393 GEKVENKELKQRVLEQA-VTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDI  455 (543)
T ss_dssp             TCCCCHHHHHHHHHHCC-CCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTC
T ss_pred             ccchhHHHHHHHHhhcc-cCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCccccCC
Confidence            1   1122222222111 1112345788999999999999999996     5899999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4e-30  Score=295.87  Aligned_cols=251  Identities=14%  Similarity=0.133  Sum_probs=199.8

Q ss_pred             cCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCC--ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 001366          826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTG--QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINE  903 (1092)
Q Consensus       826 ~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg--~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~  903 (1092)
                      .+..+|++++|+|+ +++|++|+.|++|+|||+.++  +.+..+.+|...|++++|+| ++.+|++|+.|++|++||+.+
T Consensus         9 ~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             ECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC----
T ss_pred             cCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCC
Confidence            35789999999998 899999999999999999988  77888999999999999999 889999999999999999998


Q ss_pred             Cc---eeeeE-ecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc--ceEEecC-CCCCeEEEEEc-CCCEEEEEE
Q 001366          904 KN---SLATI-KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--PWCVLAG-HEKAVSYVKFL-DSGTLVTAS  975 (1092)
Q Consensus       904 ~~---~l~~l-~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~--~~~~l~~-H~~~V~~v~fs-~~~~L~Sgs  975 (1092)
                      +.   ....+ .+...|.+++|+|++. +|++|+.|+.|++||+++.+.  ....+.+ |...|.+++|+ ++.+|++++
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence            87   34443 3778999999999985 899999999999999998753  3566677 99999999999 667899999


Q ss_pred             CCCeEEEEEcCCCCCCCC----------CCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeee
Q 001366          976 TDNKLKLWDLKRTSHTGP----------STNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYK 1045 (1092)
Q Consensus       976 ~Dg~I~vWDl~~~~~~~~----------~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~ 1045 (1092)
                      .|++|++||+........          ..+.++..+ +|...|++++|+|++.+|++|+.|+.|++||+..++..... 
T Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-  243 (377)
T 3dwl_C          166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA-  243 (377)
T ss_dssp             SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE-
T ss_pred             CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee-
Confidence            999999999964321110          124456666 89999999999999999999999999999999887652110 


Q ss_pred             ccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1046 FGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1046 ~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                               .....+|...|.+++|+|++.+|++|+.|+.+ +|+.
T Consensus       244 ---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          244 ---------LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             ---------CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             ---------eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence                     01224678889999999999999999877666 6653

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.97  E-value=7.1e-32  Score=313.43  Aligned_cols=261  Identities=13%  Similarity=0.012  Sum_probs=175.3

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhh---hhhccCCCCCCCccccceecCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGA---MMVASNASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  285 (1092)
                      .|.+.+.++  |.|.||+|...    ..+..++.|+......  ........++.   +++...+||||+.++.......
T Consensus        74 ~y~~~~~lG~G~~g~V~~a~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~  149 (377)
T 3byv_A           74 TLVRGTVLGQEDPYAYLEATDQ----ETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF  149 (377)
T ss_dssp             EEEEEEEEEEETTEEEEEEEC-----CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCS
T ss_pred             eEEEcceeecCCCEEEEEEEEC----CCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhh
Confidence            455555554  78999999862    2256667766542211  11222223333   5677779999987653221100


Q ss_pred             CCCCCccCCC----------CCccccCCCcccccCCCCCHHHHHhhcCCCCC------HHHHHHHHHHHHHHHHHhhhcC
Q 001366          286 SLDLGARTGV----------PASCWIGGLRQGSSDHGVNLREWLNARGHKGK------RIECLYIFRQIVALVDYHHTQG  349 (1092)
Q Consensus       286 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~------~~~~~~i~~qil~~l~~lHs~g  349 (1092)
                      ...  ...+.          ...+..-...+|||+ +|+|.++|...+....      ...++.|+.||+.||+|||++|
T Consensus       150 ~~~--~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~  226 (377)
T 3byv_A          150 DLV--KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG  226 (377)
T ss_dssp             EEE--ECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhh--hccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCC
Confidence            000  00000          000000012478999 6799999976544333      4678889999999999999999


Q ss_pred             ccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccc
Q 001366          350 VTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSL  429 (1092)
Q Consensus       350 IvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (1092)
                      |+||||||+||||+.++.+||+|||+++....                                                
T Consensus       227 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~------------------------------------------------  258 (377)
T 3byv_A          227 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA------------------------------------------------  258 (377)
T ss_dssp             EECSCCCGGGEEECTTCCEEECCGGGCEETTC------------------------------------------------
T ss_pred             eecCCCCHHHEEEcCCCCEEEEechhheecCC------------------------------------------------
Confidence            99999999999999999999999999875220                                                


Q ss_pred             ccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC--
Q 001366          430 FPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG--  507 (1092)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~--  507 (1092)
                                                                                ..+..+| +.|+|||++.+.  
T Consensus       259 ----------------------------------------------------------~~~~~~g-~~y~aPE~~~~~~~  279 (377)
T 3byv_A          259 ----------------------------------------------------------RVVSSVS-RGFEPPELEARRAT  279 (377)
T ss_dssp             ----------------------------------------------------------EEECCCC-TTCCCHHHHHHHTS
T ss_pred             ----------------------------------------------------------cccCCCC-cCccChhhhccccc
Confidence                                                                      0114467 889999999987  


Q ss_pred             ---------CCCccccchhhhHHHHHHcCCCCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHH
Q 001366          508 ---------VCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTRE  578 (1092)
Q Consensus       508 ---------~~t~~sDIwSLGvll~ell~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e  578 (1092)
                               .++.++|||||||+||||+++..+.......  .....+ .+.....++.+.+|+.+||.+||.+|||+.+
T Consensus       280 ~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~--~~~~~~-~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e  356 (377)
T 3byv_A          280 ISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAAL--GGSEWI-FRSCKNIPQPVRALLEGFLRYPKEDRLLPLQ  356 (377)
T ss_dssp             THHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC--------CCSGGG-GSSCCCCCHHHHHHHHHHTCSSGGGCCCHHH
T ss_pred             ccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccc--cchhhh-hhhccCCCHHHHHHHHHHcCCCchhCCCHHH
Confidence                     8999999999999999999863332211110  011111 1122455788999999999999999999999


Q ss_pred             Hhhhhhhhhhhc
Q 001366          579 ILQSEVTNEFQE  590 (1092)
Q Consensus       579 iL~~~~~~~~~~  590 (1092)
                      +|+||||.+...
T Consensus       357 ~l~hp~f~~~~~  368 (377)
T 3byv_A          357 AMETPEYEQLRT  368 (377)
T ss_dssp             HHTSHHHHHHHH
T ss_pred             HhhChHHHHHHH
Confidence            999999987644

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.97  E-value=3.2e-31  Score=312.53  Aligned_cols=254  Identities=15%  Similarity=0.160  Sum_probs=178.2

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ++.|+||++...+    .++.++.|+....     .....++..++...+||||+.++..........   
T Consensus        56 y~~~~~lG~G~fg~Vy~~~~~~----~~~~vaiK~~~~~-----~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~---  123 (420)
T 1j1b_A           56 YTDTKVIGNGSFGVVYQAKLCD----SGELVAIKKVLQD-----KRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKK---  123 (420)
T ss_dssp             EEEEEEEEECSSEEEEEEEETT----TCCEEEEEEEECC-----TTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTT---
T ss_pred             EEeeeEEeeCCCEEEEEEEECC----CCcEEEEEEeccc-----chhHHHHHHHHHHcCCCCccceeeEEeccCCCC---
Confidence            4444444  4789999998732    3455666554221     122335677788889999998755533211100   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHh---hcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC-Cc
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLN---ARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS-NQ  367 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~---~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~-~~  367 (1092)
                       ... +     ...+|||++| +|.+++.   .....++...++.|+.||+.||.|||++||+||||||+||||+.+ +.
T Consensus       124 -~~~-~-----~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~  195 (420)
T 1j1b_A          124 -DEV-Y-----LNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAV  195 (420)
T ss_dssp             -TEE-E-----EEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTE
T ss_pred             -cce-e-----EEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCe
Confidence             000 0     1137899987 6666664   344568888999999999999999999999999999999999965 67


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||+++.+....                                                                
T Consensus       196 ~kl~DFG~a~~~~~~~----------------------------------------------------------------  211 (420)
T 1j1b_A          196 LKLCDFGSAKQLVRGE----------------------------------------------------------------  211 (420)
T ss_dssp             EEECCCTTCEECCTTC----------------------------------------------------------------
T ss_pred             EEeccchhhhhcccCC----------------------------------------------------------------
Confidence            8999999997643100                                                                


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHc
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell  526 (1092)
                                                              .....+||++|+|||++.+. .++.++|||||||+||||+
T Consensus       212 ----------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell  251 (420)
T 1j1b_A          212 ----------------------------------------PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELL  251 (420)
T ss_dssp             ----------------------------------------CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHH
Confidence                                                    00145789999999999874 7999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccc------------------cCCCCC---------CCCCChhHHHHHHhccccCCCCCCCH
Q 001366          527 GR---FDSERALAAAMSDLRD------------------RILPPS---------FLSENPKEAGFCLWQLHPEPLSRPTT  576 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~------------------~~~p~~---------~~~~~~~~~~li~~lL~~dP~~Rpsa  576 (1092)
                      ++   |.+.....+....+..                  ..+|..         ....++.+.+||.+||++||.+|||+
T Consensus       252 ~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~  331 (420)
T 1j1b_A          252 LGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTP  331 (420)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             hCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCH
Confidence            86   6554433333222211                  011110         12346788999999999999999999


Q ss_pred             HHHhhhhhhhhhhcc
Q 001366          577 REILQSEVTNEFQEV  591 (1092)
Q Consensus       577 ~eiL~~~~~~~~~~~  591 (1092)
                      .|+|+||||.+.+..
T Consensus       332 ~e~l~hp~f~~~~~~  346 (420)
T 1j1b_A          332 LEACAHSFFDELRDP  346 (420)
T ss_dssp             HHHHTSGGGGGGGCT
T ss_pred             HHHhCCHhhcccccc
Confidence            999999999876543

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.97  E-value=2.4e-31  Score=302.46  Aligned_cols=240  Identities=14%  Similarity=0.002  Sum_probs=169.6

Q ss_pred             ccccceeeeCCCCCcccccccc----ccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGM----IDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      .+|.|.||+|....    .+..    ++.|+..............++...+...+||||+.++.....+. .        
T Consensus        23 ~G~~g~Vy~~~~~~----~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~--------   89 (325)
T 3kex_A           23 SGVFGTVHKGVWIP----EGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSS-L--------   89 (325)
T ss_dssp             CCSSCEEEEEEECC----TTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSS-E--------
T ss_pred             ecCCceEEEEEEcC----CCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCc-c--------
Confidence            34789999997522    1222    33333322222222223344555677789999998876532111 1        


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                              ..+|+|+.|++|.+++......++..+++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus        90 --------~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~  161 (325)
T 3kex_A           90 --------QLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGV  161 (325)
T ss_dssp             --------EEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSG
T ss_pred             --------EEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCc
Confidence                    138999999999999987655678889999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++.......                                                                       
T Consensus       162 a~~~~~~~~-----------------------------------------------------------------------  170 (325)
T 3kex_A          162 ADLLPPDDK-----------------------------------------------------------------------  170 (325)
T ss_dssp             GGGSCCCTT-----------------------------------------------------------------------
T ss_pred             ccccCcccc-----------------------------------------------------------------------
Confidence            987541100                                                                       


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCc
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDS  531 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~  531 (1092)
                                                    ....+...||..|+|||++.+..++.++|||||||+||||++ +   |..
T Consensus       171 ------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~  220 (325)
T 3kex_A          171 ------------------------------QLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAG  220 (325)
T ss_dssp             ------------------------------CCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             ------------------------------cccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccc
Confidence                                          000114467888999999999999999999999999999998 5   332


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          532 ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .... .....+.....++.....++.+.+|+.+||++||.+||++.+++++
T Consensus       221 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~  270 (325)
T 3kex_A          221 LRLA-EVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANE  270 (325)
T ss_dssp             SCTT-HHHHHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHH
T ss_pred             cCHH-HHHHHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            2111 1111222222222233356788899999999999999999999986

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.97  E-value=7.8e-31  Score=294.93  Aligned_cols=249  Identities=15%  Similarity=0.126  Sum_probs=181.9

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.++  +.|.||++...    ..+..++.|++..... .......++...+...+|||++.++.........+  
T Consensus        10 ~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~--   82 (304)
T 2jam_A           10 TFIFMEVLGSGAFSEVFLVKQR----LTGKLFALKCIKKSPA-FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYY--   82 (304)
T ss_dssp             HEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEECC-------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEE--
T ss_pred             cceeeeeccCCCCceEEEEEEC----CCCCEEEEEEEecccc-cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEE--
Confidence            344444443  67999998752    1245566666533221 12233445666778889999998766544322222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE---ccCCc
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL---LQSNQ  367 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill---~~~~~  367 (1092)
                                    .+|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+||++   +..+.
T Consensus        83 --------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~  147 (304)
T 2jam_A           83 --------------LVMQLVSGGELFDRILERG-VYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSK  147 (304)
T ss_dssp             --------------EEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCC
T ss_pred             --------------EEEEcCCCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCC
Confidence                          3899999999999997664 47777999999999999999999999999999999999   67889


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +|++|||+++....                                                                  
T Consensus       148 ~kl~Dfg~~~~~~~------------------------------------------------------------------  161 (304)
T 2jam_A          148 IMITDFGLSKMEQN------------------------------------------------------------------  161 (304)
T ss_dssp             EEBCSCSTTCCCCC------------------------------------------------------------------
T ss_pred             EEEccCCcceecCC------------------------------------------------------------------
Confidence            99999998754220                                                                  


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                             .......||+.|+|||.+.+..++.++|||||||++|||++
T Consensus       162 ---------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  202 (304)
T 2jam_A          162 ---------------------------------------GIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLC  202 (304)
T ss_dssp             ---------------------------------------BTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHH
Confidence                                                   00113468999999999999999999999999999999998


Q ss_pred             C---CCcHHHHHHHHHhccc--cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          528 R---FDSERALAAAMSDLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +   |...............  ...++.....++.+.+|+.+||++||.+|||+.++|+||||...
T Consensus       203 g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~  268 (304)
T 2jam_A          203 GYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGN  268 (304)
T ss_dssp             SSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHSS
T ss_pred             CCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCccccCC
Confidence            6   4333222222111111  12223345567889999999999999999999999999999864

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.97  E-value=3.5e-31  Score=302.76  Aligned_cols=244  Identities=17%  Similarity=0.177  Sum_probs=159.4

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|.||++...    ..++.++.|+....     .........++....|||++.+++........     ...   
T Consensus        38 G~G~~g~V~~~~~~----~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~-----~~~---  100 (336)
T 3fhr_A           38 GLGVNGKVLECFHR----RTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMHHG-----KRC---  100 (336)
T ss_dssp             EEETTEEEEEEEET----TTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT-----EEE---
T ss_pred             eeCCCeEEEEEEEC----CCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCC-----Cce---
Confidence            44688999999763    22556666665321     12222333445677899999876654321100     000   


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC---CcEEEeccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS---NQVKYIGPI  374 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~---~~vkl~Dfg  374 (1092)
                          ..++||||+|++|.+++...+ ..++..+++.|+.||+.||+|||++||+||||||+|||++.+   +.+||+|||
T Consensus       101 ----~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg  176 (336)
T 3fhr_A          101 ----LLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFG  176 (336)
T ss_dssp             ----EEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCT
T ss_pred             ----EEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccc
Confidence                113899999999999997654 468888999999999999999999999999999999999864   459999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.....                                                                        
T Consensus       177 ~~~~~~~~------------------------------------------------------------------------  184 (336)
T 3fhr_A          177 FAKETTQN------------------------------------------------------------------------  184 (336)
T ss_dssp             TCEEC---------------------------------------------------------------------------
T ss_pred             cceecccc------------------------------------------------------------------------
Confidence            88753310                                                                        


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCc
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                       ......||+.|+|||++.+..++.++|||||||+||||+++   |..
T Consensus       185 ---------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  231 (336)
T 3fhr_A          185 ---------------------------------ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYS  231 (336)
T ss_dssp             ----------------------------------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             ---------------------------------ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence                                             01144679999999999888999999999999999999986   322


Q ss_pred             HHHHHHH---HHhc---cccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          532 ERALAAA---MSDL---RDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       532 ~~~~~~~---~~~~---~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      .......   ...+   .....++.+...++.+.+|+.+||++||.+|||+.|+|+||||+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~  294 (336)
T 3fhr_A          232 NTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQS  294 (336)
T ss_dssp             -------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTG
T ss_pred             ccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCcccccc
Confidence            2211110   1111   1112233445678899999999999999999999999999999875

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.97  E-value=2.5e-31  Score=305.17  Aligned_cols=268  Identities=18%  Similarity=0.196  Sum_probs=185.4

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||++...    ..+..++.|+..............++..++...+|||++.++.....+....   
T Consensus        13 y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~---   85 (353)
T 2b9h_A           13 FQLKSLLGEGAYGVVCSATHK----PTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFEN---   85 (353)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTT---
T ss_pred             eEEeeEEcCCCCeEEEEEEEC----CCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCc---
Confidence            4444444  478999999763    2245566666543333333444557777888889999998766533221111   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                       ..       ...++|||+. ++|.+++...  .++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+
T Consensus        86 -~~-------~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~  154 (353)
T 2b9h_A           86 -FN-------EVYIIQELMQ-TDLHRVISTQ--MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVC  154 (353)
T ss_dssp             -CC-------CEEEEECCCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEEC
T ss_pred             -cc-------eEEEEEeccC-ccHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEE
Confidence             01       1124788987 5999999764  57888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++...........                                                               
T Consensus       155 Dfg~a~~~~~~~~~~~~---------------------------------------------------------------  171 (353)
T 2b9h_A          155 DFGLARIIDESAADNSE---------------------------------------------------------------  171 (353)
T ss_dssp             CCTTCEECC-----------------------------------------------------------------------
T ss_pred             ecccccccccccccccC---------------------------------------------------------------
Confidence            99999875521100000                                                               


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                    ...........+||++|+|||++.+ ..++.++|||||||+||||+++  
T Consensus       172 ------------------------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~  221 (353)
T 2b9h_A          172 ------------------------------PTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRP  221 (353)
T ss_dssp             --------------------------------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------ccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCC
Confidence                                          0000011225689999999998865 6789999999999999999985  


Q ss_pred             -CCcHHHHHHHHHhc--cccC-----------------------CC-----CCCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          529 -FDSERALAAAMSDL--RDRI-----------------------LP-----PSFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~--~~~~-----------------------~p-----~~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                       |.+...........  ...+                       .+     ..+...++.+.+|+.+||++||.+|||+.
T Consensus       222 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  301 (353)
T 2b9h_A          222 IFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAK  301 (353)
T ss_dssp             SCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHH
Confidence             54433222221111  0000                       00     01235678899999999999999999999


Q ss_pred             HHhhhhhhhhhhccc
Q 001366          578 EILQSEVTNEFQEVC  592 (1092)
Q Consensus       578 eiL~~~~~~~~~~~~  592 (1092)
                      |+|+||||.......
T Consensus       302 ell~hp~~~~~~~~~  316 (353)
T 2b9h_A          302 EALEHPYLQTYHDPN  316 (353)
T ss_dssp             HHHTSGGGTTTCCTT
T ss_pred             HHhcCccccccCCcc
Confidence            999999998765543

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.97  E-value=6.6e-31  Score=304.05  Aligned_cols=241  Identities=15%  Similarity=0.143  Sum_probs=177.1

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCc--hh-----hHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SD-----AALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGAR  292 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  292 (1092)
                      ++.|.||++...    ..+..++.|++......  ..     .....++..++... .|||++.++.........+    
T Consensus       105 G~~g~Vy~a~~~----~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~----  176 (365)
T 2y7j_A          105 GVSSVVRRCVHR----ATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMF----  176 (365)
T ss_dssp             CSSEEEEEEEET----TTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEE----
T ss_pred             CCCEEEEEEEEC----CCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEE----
Confidence            468999999763    12556677665332211  01     12233445555555 7999998776654333333    


Q ss_pred             CCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEec
Q 001366          293 TGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIG  372 (1092)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~D  372 (1092)
                                  .+|||++|++|.+++.... .++...++.|+.||+.||+|||++||+||||||+||+++.++.+|++|
T Consensus       177 ------------lv~e~~~g~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~D  243 (365)
T 2y7j_A          177 ------------LVFDLMRKGELFDYLTEKV-ALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSD  243 (365)
T ss_dssp             ------------EEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECC
T ss_pred             ------------EEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEe
Confidence                        3899999999999997654 577889999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||++..+...                                                                      
T Consensus       244 fG~~~~~~~~----------------------------------------------------------------------  253 (365)
T 2y7j_A          244 FGFSCHLEPG----------------------------------------------------------------------  253 (365)
T ss_dssp             CTTCEECCTT----------------------------------------------------------------------
T ss_pred             cCcccccCCC----------------------------------------------------------------------
Confidence            9988664310                                                                      


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC------CCCCccccchhhhHHHHHHc
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG------GVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~------~~~t~~sDIwSLGvll~ell  526 (1092)
                                                        ......+||+.|+|||++.+      ..++.++|||||||+||||+
T Consensus       254 ----------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell  299 (365)
T 2y7j_A          254 ----------------------------------EKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLL  299 (365)
T ss_dssp             ----------------------------------CCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHH
T ss_pred             ----------------------------------cccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHH
Confidence                                              00114578999999999864      35889999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccc--cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRD--RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      ++   |...............  ....+.+...++.+.+||.+||++||.+|||+.++|+||||.
T Consensus       300 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~f~  364 (365)
T 2y7j_A          300 AGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFE  364 (365)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGC
T ss_pred             HCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcccC
Confidence            86   4333322222222221  112233456678899999999999999999999999999996

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=6.6e-31  Score=305.93  Aligned_cols=263  Identities=17%  Similarity=0.170  Sum_probs=179.1

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC---
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD---  288 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  288 (1092)
                      |.+.+.+  ++.|+||++...    ..++.++.|+....     .....++..++...+||||+.+++.........   
T Consensus         9 y~~~~~lG~G~fg~V~~a~~~----~~~~~vAiK~~~~~-----~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~   79 (383)
T 3eb0_A            9 YSLGKTLGTGSFGIVCEVFDI----ESGKRFALKKVLQD-----PRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP   79 (383)
T ss_dssp             EEEEEEEECC-CEEEEEEEET----TTCCEEEEEEEECC-----TTSCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred             EEEEEEEEeccCEEEEEEEEC----CCCCEEEEEEEecC-----cchHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence            4444444  478999999752    23566666655322     122235667788889999998876653322100   


Q ss_pred             ----------CCccCCCCC----ccc---cC--CCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhh
Q 001366          289 ----------LGARTGVPA----SCW---IG--GLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHH  346 (1092)
Q Consensus       289 ----------~~~~~~~~~----~~~---~~--~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lH  346 (1092)
                                .....++..    ..+   .+  ..++|||++| +|.++|..   .+..++...++.|+.||+.||.|||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH  158 (383)
T 3eb0_A           80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH  158 (383)
T ss_dssp             ------------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                      000000000    000   00  2258999995 88887753   4456888899999999999999999


Q ss_pred             hcCccccCCCCCCeEEc-cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccc
Q 001366          347 TQGVTFLDLKPSSFKLL-QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSR  425 (1092)
Q Consensus       347 s~gIvHrDLKP~Nill~-~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (1092)
                      ++||+||||||+|||++ .++.+||+|||+++.+....                                          
T Consensus       159 ~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~------------------------------------------  196 (383)
T 3eb0_A          159 SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE------------------------------------------  196 (383)
T ss_dssp             TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS------------------------------------------
T ss_pred             HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC------------------------------------------
Confidence            99999999999999998 68899999999987643100                                          


Q ss_pred             ccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc
Q 001366          426 WWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS  505 (1092)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~  505 (1092)
                                                                                    ......||++|+|||++.
T Consensus       197 --------------------------------------------------------------~~~~~~~t~~y~aPE~~~  214 (383)
T 3eb0_A          197 --------------------------------------------------------------PSVAYICSRFYRAPELML  214 (383)
T ss_dssp             --------------------------------------------------------------CCCCCCCCSSCCCHHHHT
T ss_pred             --------------------------------------------------------------CCcCcccCCCccCHHHhc
Confidence                                                                          011456899999999998


Q ss_pred             CC-CCCccccchhhhHHHHHHcCC---CCcHHHHHHHHHhcccc------------------CCCC---------CCCCC
Q 001366          506 GG-VCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDR------------------ILPP---------SFLSE  554 (1092)
Q Consensus       506 ~~-~~t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~------------------~~p~---------~~~~~  554 (1092)
                      +. .++.++|||||||++|||+++   |.+..........+...                  .+|.         .....
T Consensus       215 ~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (383)
T 3eb0_A          215 GATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGT  294 (383)
T ss_dssp             TCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTC
T ss_pred             CCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCC
Confidence            74 489999999999999999985   55544433333222110                  0110         01234


Q ss_pred             ChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          555 NPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       555 ~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      ++.+.+|+.+||++||.+|||+.|+|+||||.+.+.
T Consensus       295 ~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  330 (383)
T 3eb0_A          295 PSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHLRN  330 (383)
T ss_dssp             CHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHHHH
T ss_pred             CHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHHHh
Confidence            677899999999999999999999999999987644

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.97  E-value=8.1e-31  Score=302.35  Aligned_cols=251  Identities=16%  Similarity=0.185  Sum_probs=176.5

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCch----------hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS----------DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.|.||++...+     +..++.|++.......          ......++..++...+|||++.+++.........  
T Consensus        33 G~~g~V~~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~--  105 (362)
T 3pg1_A           33 GSYGAVCAGVDSE-----GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRDIFVHFEEPA--  105 (362)
T ss_dssp             ETTEEEEEEECTT-----SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEEEECCTTT--
T ss_pred             CCCEEEEEEECCC-----CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceeeeEEeccCCC--
Confidence            4789999997644     4555665543222111          1134556777788889999998877654322111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                        ...       ..++|||+. ++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+||
T Consensus       106 --~~~-------~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl  175 (362)
T 3pg1_A          106 --MHK-------LYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITI  175 (362)
T ss_dssp             --CCE-------EEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEE
T ss_pred             --cce-------EEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCEEE
Confidence              000       114799998 5899999877667889899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.....                                                                    
T Consensus       176 ~Dfg~~~~~~~~--------------------------------------------------------------------  187 (362)
T 3pg1_A          176 CDFNLAREDTAD--------------------------------------------------------------------  187 (362)
T ss_dssp             CCTTC---------------------------------------------------------------------------
T ss_pred             EecCcccccccc--------------------------------------------------------------------
Confidence            999998653310                                                                    


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                          .......||++|+|||++.+ ..++.++|||||||++|||+++ 
T Consensus       188 ------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~  231 (362)
T 3pg1_A          188 ------------------------------------ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRK  231 (362)
T ss_dssp             --------------------------------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------------------------cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCC
Confidence                                                00114578999999999987 6789999999999999999985 


Q ss_pred             --CCcHHHHHHHHHhcc-----------------------c--cCCC-----CCCCCCChhHHHHHHhccccCCCCCCCH
Q 001366          529 --FDSERALAAAMSDLR-----------------------D--RILP-----PSFLSENPKEAGFCLWQLHPEPLSRPTT  576 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~-----------------------~--~~~p-----~~~~~~~~~~~~li~~lL~~dP~~Rpsa  576 (1092)
                        |.+............                       .  ...+     ......++.+.+|+.+||++||.+|||+
T Consensus       232 ~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~  311 (362)
T 3pg1_A          232 ALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRIST  311 (362)
T ss_dssp             CSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCH
Confidence              544322222111110                       0  0001     1123457889999999999999999999


Q ss_pred             HHHhhhhhhhhhhccc
Q 001366          577 REILQSEVTNEFQEVC  592 (1092)
Q Consensus       577 ~eiL~~~~~~~~~~~~  592 (1092)
                      .|+|+||||.......
T Consensus       312 ~ell~hp~f~~~~~~~  327 (362)
T 3pg1_A          312 EQALRHPYFESLFDPL  327 (362)
T ss_dssp             HHHHTSGGGTTTCCGG
T ss_pred             HHHHcCchhhhccCcc
Confidence            9999999999865443

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.97  E-value=6e-31  Score=299.65  Aligned_cols=246  Identities=16%  Similarity=0.069  Sum_probs=175.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccc----cccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMI----DTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      |.+.+.+  +|.|.||++....    .+..+    +.|...............++..++...+|||++.+++....+...
T Consensus        17 y~~~~~lG~G~~g~Vy~~~~~~----~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   92 (327)
T 3lzb_A           17 FKKIKVLGSGAFGTVYKGLWIP----EGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ   92 (327)
T ss_dssp             EEEEEEEEECSSEEEEEEEECC----TTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEE
T ss_pred             ceEEEEeeeCCCeEEEEEEEcC----CCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCce
Confidence            4444444  4789999997522    12222    223322222233344555677788888999999887765432211


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                                       .+++|+.+++|.+++......++..+++.|+.||+.||.|||++||+||||||+|||++.++.
T Consensus        93 -----------------~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~  155 (327)
T 3lzb_A           93 -----------------LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQH  155 (327)
T ss_dssp             -----------------EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTE
T ss_pred             -----------------EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCC
Confidence                             279999999999999887777889899999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||+++.......                                                               
T Consensus       156 ~kL~DfG~a~~~~~~~~---------------------------------------------------------------  172 (327)
T 3lzb_A          156 VKITDFGLAKLLGAEEK---------------------------------------------------------------  172 (327)
T ss_dssp             EEECCTTC------------------------------------------------------------------------
T ss_pred             EEEccCcceeEccCccc---------------------------------------------------------------
Confidence            99999999977541100                                                               


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                            ........||+.|+|||++.+..++.++|||||||+||||++
T Consensus       173 --------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~  214 (327)
T 3lzb_A          173 --------------------------------------EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT  214 (327)
T ss_dssp             ---------------------------------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             --------------------------------------cccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHH
Confidence                                                  000113456788999999999999999999999999999998


Q ss_pred             -C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          528 -R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       528 -~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       +   |..... ......+.....++.....++.+.+|+.+||++||.+||++.|+++.
T Consensus       215 ~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  272 (327)
T 3lzb_A          215 FGSKPYDGIPA-SEISSILEKGERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             TSCCTTTTCCG-GGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCCCCH-HHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence             5   332211 11222222233334444567889999999999999999999999973

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.97  E-value=5.9e-31  Score=294.33  Aligned_cols=256  Identities=18%  Similarity=0.135  Sum_probs=188.7

Q ss_pred             CCchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecC
Q 001366          209 SGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSN  284 (1092)
Q Consensus       209 ~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (1092)
                      .....|.+.+.++  |.|.||++...+    .+..++.|+......  ........++..++....|||++.++.....+
T Consensus        12 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~----~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   87 (294)
T 2rku_A           12 RSRRRYVRGRFLGKGGFAKCFEISDAD----TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN   87 (294)
T ss_dssp             TTTEEEEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS
T ss_pred             CcccceEEEEEEeecCCEEEEEEEECC----CCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccC
Confidence            3344555555554  789999998633    244556655432221  12233445566778888999999877665433


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                      ...+                .+|||++|++|.++++..+ .++..+++.++.||+.||+|||++||+||||||+||+++.
T Consensus        88 ~~~~----------------lv~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~  150 (294)
T 2rku_A           88 DFVF----------------VVLELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNE  150 (294)
T ss_dssp             SEEE----------------EEEECCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECT
T ss_pred             CEEE----------------EEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcC
Confidence            3222                3899999999999997754 5777799999999999999999999999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.+||+|||+++......                                                             
T Consensus       151 ~~~~kl~dfg~~~~~~~~~-------------------------------------------------------------  169 (294)
T 2rku_A          151 DLEVKIGDFGLATKVEYDG-------------------------------------------------------------  169 (294)
T ss_dssp             TCCEEECCCTTCEECCSTT-------------------------------------------------------------
T ss_pred             CCCEEEEeccCceecccCc-------------------------------------------------------------
Confidence            9999999999887643100                                                             


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~e  524 (1092)
                                                                .......||+.|+|||.+.+..++.++|||||||++||
T Consensus       170 ------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  207 (294)
T 2rku_A          170 ------------------------------------------ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYT  207 (294)
T ss_dssp             ------------------------------------------CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHH
T ss_pred             ------------------------------------------cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHH
Confidence                                                      00113568999999999999889999999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          525 LFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      |+++   |.................  +.....++.+.+|+.+||++||.+|||+.++|+||||.....
T Consensus       208 l~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~~  274 (294)
T 2rku_A          208 LLVGKPPFETSCLKETYLRIKKNEY--SIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGYI  274 (294)
T ss_dssp             HHHSSCTTCCSSHHHHHHHHHTTCC--CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSCC
T ss_pred             HHhCCCCCCCCCHHHHHHHHhhccC--CCccccCHHHHHHHHHHcccChhhCcCHHHHhhChheecCCc
Confidence            9986   444333222222222211  112245788999999999999999999999999999987543

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.97  E-value=3.1e-31  Score=300.43  Aligned_cols=249  Identities=12%  Similarity=0.077  Sum_probs=178.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||++....    .+..++.|++.............++..++...+|||++.+++........    
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~----   82 (319)
T 4euu_A           11 WLLSDILGQGATANVFRGRHKK----TGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTR----   82 (319)
T ss_dssp             EEEEEEEEECSSEEEEEEEETT----TCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTC----
T ss_pred             EEEEEEecCCCCeEEEEEEECC----CCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCc----
Confidence            4444444  4789999998632    35566777664433333344455777788888999999877654322211    


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE----ccC
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGH--KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL----LQS  365 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~--~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill----~~~  365 (1092)
                         ..       .++|||++|++|.++++....  .++..+++.|+.||+.||+|||++||+||||||+|||+    +..
T Consensus        83 ---~~-------~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~  152 (319)
T 4euu_A           83 ---HK-------VLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQ  152 (319)
T ss_dssp             ---CE-------EEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSC
T ss_pred             ---eE-------EEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCC
Confidence               00       138999999999999976433  37888999999999999999999999999999999999    777


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++.....                                                               
T Consensus       153 ~~~kL~Dfg~a~~~~~~---------------------------------------------------------------  169 (319)
T 4euu_A          153 SVYKLTDFGAARELEDD---------------------------------------------------------------  169 (319)
T ss_dssp             EEEEECCCTTCEECCTT---------------------------------------------------------------
T ss_pred             ceEEEccCCCceecCCC---------------------------------------------------------------
Confidence            88999999998764410                                                               


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc--------CCCCCccccchh
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS--------GGVCTTSSNIYS  517 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~--------~~~~t~~sDIwS  517 (1092)
                                                               .......||+.|+|||++.        +..++.++||||
T Consensus       170 -----------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~Diws  208 (319)
T 4euu_A          170 -----------------------------------------EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWS  208 (319)
T ss_dssp             -----------------------------------------CCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHH
T ss_pred             -----------------------------------------CceeecccCCCccCHHHhhhccccccccCCCCcHHHHHH
Confidence                                                     0011456899999999986        577899999999


Q ss_pred             hhHHHHHHcCC---CC---cHHHHHHHHHhccccCC---------------------CCC--C-CCCChhHHHHHHhccc
Q 001366          518 LGVLFFELFGR---FD---SERALAAAMSDLRDRIL---------------------PPS--F-LSENPKEAGFCLWQLH  567 (1092)
Q Consensus       518 LGvll~ell~~---f~---~~~~~~~~~~~~~~~~~---------------------p~~--~-~~~~~~~~~li~~lL~  567 (1092)
                      |||+||||+++   |.   ........+..+.....                     |..  + ...++.+.+|+.+||+
T Consensus       209 lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~  288 (319)
T 4euu_A          209 IGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILE  288 (319)
T ss_dssp             HHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhcc
Confidence            99999999986   32   11222222222221111                     110  0 0112457799999999


Q ss_pred             cCCCCCCCHHHHhhhhh
Q 001366          568 PEPLSRPTTREILQSEV  584 (1092)
Q Consensus       568 ~dP~~Rpsa~eiL~~~~  584 (1092)
                      +||.+|||++|+|+||-
T Consensus       289 ~dP~~R~s~~ell~h~~  305 (319)
T 4euu_A          289 ADQEKCWGFDQFFAETS  305 (319)
T ss_dssp             CCTTTSCCHHHHHHHHH
T ss_pred             CChhhhccHHHhhhccH
Confidence            99999999999999984

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.97  E-value=8.5e-31  Score=293.85  Aligned_cols=249  Identities=15%  Similarity=0.049  Sum_probs=182.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||++.....-...+..++.|++.............++..++...+|||++.+++.........           
T Consensus        31 ~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   99 (302)
T 4e5w_A           31 EGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG-----------   99 (302)
T ss_dssp             ECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC-----------
T ss_pred             CCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce-----------
Confidence            347899999873211122356677776644433333445566777888889999998776654321111           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                         ...+|||++|++|.+++......++..+++.++.||+.||+|||++||+||||||+||+++.++.+||+|||+++..
T Consensus       100 ---~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~  176 (302)
T 4e5w_A          100 ---IKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAI  176 (302)
T ss_dssp             ---EEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             ---EEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccccc
Confidence               01389999999999999777667888899999999999999999999999999999999999999999999998765


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      .....                                                                           
T Consensus       177 ~~~~~---------------------------------------------------------------------------  181 (302)
T 4e5w_A          177 ETDKE---------------------------------------------------------------------------  181 (302)
T ss_dssp             CTTCC---------------------------------------------------------------------------
T ss_pred             cCCCc---------------------------------------------------------------------------
Confidence            41100                                                                           


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCc--------
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDS--------  531 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~--------  531 (1092)
                                               .........||..|+|||.+.+..++.++|||||||++|||+++..+        
T Consensus       182 -------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~  236 (302)
T 4e5w_A          182 -------------------------YYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALF  236 (302)
T ss_dssp             -------------------------EEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH
T ss_pred             -------------------------ceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHH
Confidence                                     00001144678889999999999999999999999999999996332        


Q ss_pred             ---------HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          532 ---------ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       532 ---------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                               ..........+.....++.....++.+.+|+.+||+.||.+|||+.++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  296 (302)
T 4e5w_A          237 LKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEG  296 (302)
T ss_dssp             HHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             hhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence                     222233333333333444445668899999999999999999999999873

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.97  E-value=4.2e-31  Score=308.89  Aligned_cols=255  Identities=18%  Similarity=0.189  Sum_probs=178.9

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.++  |.|+||++...+     ...++.|....     +.....++..++...+||||+.++..........  
T Consensus        41 ~Y~~~~~lG~G~~g~V~~a~~~~-----~~~~aikk~~~-----~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~--  108 (394)
T 4e7w_A           41 AYTNCKVIGNGSFGVVFQAKLVE-----SDEVAIKKVLQ-----DKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKK--  108 (394)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETT-----TEEEEEEEEEC-----CTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSS--
T ss_pred             eEEEeEEEeeCCCeEEEEEEECC-----CCeEEEEEEec-----CcchHHHHHHHHHhCCCCCcceEEEEEEecCCCC--
Confidence            355555554  789999998633     22234433221     1122335677788889999998766654322111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHh--hcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc-cCCc
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLN--ARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL-QSNQ  367 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~--~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~-~~~~  367 (1092)
                       ....       ...+|||+.|+.+..+..  .....++...++.|+.||+.||+|||++||+||||||+||||+ .++.
T Consensus       109 -~~~~-------~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~  180 (394)
T 4e7w_A          109 -DEVF-------LNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGV  180 (394)
T ss_dssp             -SCEE-------EEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTE
T ss_pred             -CceE-------EEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCc
Confidence             0000       113799999865554432  2345688889999999999999999999999999999999999 7899


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||+++......                                                                
T Consensus       181 ~kL~DFG~a~~~~~~~----------------------------------------------------------------  196 (394)
T 4e7w_A          181 LKLIDFGSAKILIAGE----------------------------------------------------------------  196 (394)
T ss_dssp             EEECCCTTCEECCTTC----------------------------------------------------------------
T ss_pred             EEEeeCCCcccccCCC----------------------------------------------------------------
Confidence            9999999987643100                                                                


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHc
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell  526 (1092)
                                                              .....+||++|+|||++.+. .++.++|||||||+||||+
T Consensus       197 ----------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell  236 (394)
T 4e7w_A          197 ----------------------------------------PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELM  236 (394)
T ss_dssp             ----------------------------------------CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHH
Confidence                                                    01145789999999999874 5899999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccc------------------cCCCC--------CC-CCCChhHHHHHHhccccCCCCCCCH
Q 001366          527 GR---FDSERALAAAMSDLRD------------------RILPP--------SF-LSENPKEAGFCLWQLHPEPLSRPTT  576 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~------------------~~~p~--------~~-~~~~~~~~~li~~lL~~dP~~Rpsa  576 (1092)
                      ++   |.+..........++.                  ..+|.        .+ ...++.+.+|+.+||++||.+|||+
T Consensus       237 ~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~  316 (394)
T 4e7w_A          237 QGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTA  316 (394)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCH
T ss_pred             hCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCH
Confidence            85   6554433333222211                  01111        01 2357889999999999999999999


Q ss_pred             HHHhhhhhhhhhhcc
Q 001366          577 REILQSEVTNEFQEV  591 (1092)
Q Consensus       577 ~eiL~~~~~~~~~~~  591 (1092)
                      .|+|+||||.+.+..
T Consensus       317 ~e~l~hp~f~~~~~~  331 (394)
T 4e7w_A          317 IEALCHPFFDELRTG  331 (394)
T ss_dssp             HHHHTSGGGSTTTSS
T ss_pred             HHHhcChhhhhhccc
Confidence            999999999876543

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=8.2e-31  Score=289.25  Aligned_cols=244  Identities=16%  Similarity=0.131  Sum_probs=181.9

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.+.+.+  +|.|.||++...+     +..++.|+......  ......++..++...+|||++.++.....+...+  
T Consensus        11 ~y~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~--   81 (269)
T 4hcu_A           11 ELTFVQEIGSGQFGLVHLGYWLN-----KDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC--   81 (269)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETT-----TEEEEEEEECTTSB--CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE--
T ss_pred             hceeeheecCCCccEEEEEEecC-----CCeEEEEEeccccc--CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceE--
Confidence            34444444  4789999998643     34455555532221  2233456677788889999998776654333222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    .+|||++|++|.+++......++..+++.++.||+.||+|||++||+||||||+||+++.++.+|+
T Consensus        82 --------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl  147 (269)
T 4hcu_A           82 --------------LVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKV  147 (269)
T ss_dssp             --------------EEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEE
T ss_pred             --------------EEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEe
Confidence                          389999999999999877777889899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.......                                                                  
T Consensus       148 ~Dfg~~~~~~~~~~------------------------------------------------------------------  161 (269)
T 4hcu_A          148 SDFGMTRFVLDDQY------------------------------------------------------------------  161 (269)
T ss_dssp             CCTTGGGGBCCHHH------------------------------------------------------------------
T ss_pred             cccccccccccccc------------------------------------------------------------------
Confidence            99999876441000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......+|+.|+|||.+.+..++.++|||||||++|||++ + 
T Consensus       162 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~  205 (269)
T 4hcu_A          162 ------------------------------------TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGK  205 (269)
T ss_dssp             ------------------------------------HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             ------------------------------------ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCC
Confidence                                                00113456788999999998999999999999999999998 4 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                        |...... .....+.....+......++.+.+|+.+||++||.+||++.+++++
T Consensus       206 ~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~  260 (269)
T 4hcu_A          206 IPYENRSNS-EVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ  260 (269)
T ss_dssp             CTTTTCCHH-HHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCHH-HHHHHHhcCccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence              4333222 2233333333333334457889999999999999999999999986

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.97  E-value=5.1e-31  Score=293.32  Aligned_cols=249  Identities=12%  Similarity=0.081  Sum_probs=183.2

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.+  ++.|.||++....    .+..++.|+......  ........++..++...+|||++.++.....+...+
T Consensus        15 ~y~~~~~lg~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   90 (284)
T 2vgo_A           15 DFDIGRPLGKGKFGNVYLAREKQ----NKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIY   90 (284)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETT----TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             hceeeheecCCCCeEEEEEEEcC----CCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEE
Confidence            45555444  3689999997632    234455555422111  111233445566777889999998777654333222


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      ++|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+||+++.++.+
T Consensus        91 ----------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~  153 (284)
T 2vgo_A           91 ----------------LMLEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGEL  153 (284)
T ss_dssp             ----------------EEECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCE
T ss_pred             ----------------EEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCE
Confidence                            3899999999999997765 47787999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||++......                                                                  
T Consensus       154 kl~Dfg~~~~~~~~------------------------------------------------------------------  167 (284)
T 2vgo_A          154 KIADFGWSVHAPSL------------------------------------------------------------------  167 (284)
T ss_dssp             EECCCTTCEECSSS------------------------------------------------------------------
T ss_pred             EEecccccccCccc------------------------------------------------------------------
Confidence            99999987553200                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                             ......||+.|+|||.+.+..++.++|||||||++|||+++
T Consensus       168 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  208 (284)
T 2vgo_A          168 ---------------------------------------RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVG  208 (284)
T ss_dssp             ---------------------------------------CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHS
T ss_pred             ---------------------------------------ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHC
Confidence                                                   00134688999999999999999999999999999999985


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                         |.................  +.....++.+.+|+.+||++||.+||++.++++||||....
T Consensus       209 ~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~~~~~  270 (284)
T 2vgo_A          209 MPPFDSPSHTETHRRIVNVDL--KFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKANS  270 (284)
T ss_dssp             SCTTCCSSHHHHHHHHHTTCC--CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTCHHHHHHC
T ss_pred             CCCCCCCCHhHHHHHHhcccc--CCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhCHHHHhhc
Confidence               444333222222222211  11123478899999999999999999999999999998754

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=303.47  Aligned_cols=252  Identities=16%  Similarity=0.152  Sum_probs=183.1

Q ss_pred             HHHhhhc--cccceeeeCCCCC---ccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLN---AFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  287 (1092)
                      |.+.+.+  +|.|.||++....   .....+..++.|+..............++..++... +||||+.++.....+...
T Consensus        71 y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~  150 (382)
T 3tt0_A           71 LVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPL  150 (382)
T ss_dssp             EEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             eEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCce
Confidence            4444444  4789999987411   001113345666554333333334455666667666 899999987765543333


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCccc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVTF  352 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvH  352 (1092)
                      +                ++|||++|++|.++|....               ..++..+++.|+.||+.||+|||++||+|
T Consensus       151 ~----------------lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH  214 (382)
T 3tt0_A          151 Y----------------VIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIH  214 (382)
T ss_dssp             E----------------EEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             E----------------EEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEec
Confidence            3                3899999999999997654               34888899999999999999999999999


Q ss_pred             cCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccC
Q 001366          353 LDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPS  432 (1092)
Q Consensus       353 rDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (1092)
                      |||||+||||+.++.+||+|||+++.......                                                
T Consensus       215 ~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~------------------------------------------------  246 (382)
T 3tt0_A          215 RDLAARNVLVTEDNVMKIADFGLARDIHHIDY------------------------------------------------  246 (382)
T ss_dssp             SCCCGGGEEECTTCCEEECSCSCCCCSSCCCT------------------------------------------------
T ss_pred             CCCCcceEEEcCCCcEEEcccCcccccccccc------------------------------------------------
Confidence            99999999999999999999999876441100                                                


Q ss_pred             ccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCcc
Q 001366          433 KYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTS  512 (1092)
Q Consensus       433 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~  512 (1092)
                                                                           ........||+.|+|||++.+..++.+
T Consensus       247 -----------------------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~  273 (382)
T 3tt0_A          247 -----------------------------------------------------YKKTTNGRLPVKWMAPEALFDRIYTHQ  273 (382)
T ss_dssp             -----------------------------------------------------TCCCTTCCCGGGGSCHHHHHSCCCCHH
T ss_pred             -----------------------------------------------------cccccCCCCCcceeCHHHhcCCCCCch
Confidence                                                                 000113457888999999999999999


Q ss_pred             ccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          513 SNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       513 sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      +|||||||+||||++ +   |.... .......+.....++.....++.+.+|+.+||++||.+|||+.||+++-
T Consensus       274 ~DiwslG~il~ellt~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  347 (382)
T 3tt0_A          274 SDVWSFGVLLWEIFTLGGSPYPGVP-VEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  347 (382)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSSTTCC-HHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            999999999999998 4   33322 2223333333333334455688899999999999999999999999863

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.97  E-value=1.3e-30  Score=302.25  Aligned_cols=249  Identities=16%  Similarity=0.196  Sum_probs=179.5

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|.||++...    ..+..++.|+....... .......++..++...+|||++.+++.........     ..   
T Consensus        52 ~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~-----~~---  119 (371)
T 4exu_A           52 SGAYGSVCSAIDK----RSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLR-----NF---  119 (371)
T ss_dssp             ECSSEEEEEEEET----TTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSST-----TC---
T ss_pred             cCCCeEEEEEEEC----CCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcc-----cc---
Confidence            3478999999652    22556666665432222 22344556777888889999998877654332221     00   


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                        .....+|+|+. ++|.+++..   .++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.
T Consensus       120 --~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~  193 (371)
T 4exu_A          120 --YDFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARH  193 (371)
T ss_dssp             --CCCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred             --eeEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence              01124789988 589888743   378889999999999999999999999999999999999999999999998865


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ...                                                                             
T Consensus       194 ~~~-----------------------------------------------------------------------------  196 (371)
T 4exu_A          194 ADA-----------------------------------------------------------------------------  196 (371)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            331                                                                             


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                   ..+..+||++|+|||++.+ ..++.++|||||||+||||+++   |.+...
T Consensus       197 -----------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~  247 (371)
T 4exu_A          197 -----------------------------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY  247 (371)
T ss_dssp             --------------------------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             -----------------------------CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCh
Confidence                                         0114568999999999988 7789999999999999999985   544333


Q ss_pred             HHHHHHhccccCC-----------------------------CCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          535 LAAAMSDLRDRIL-----------------------------PPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       535 ~~~~~~~~~~~~~-----------------------------p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .......+.....                             +..+...++.+.+|+.+||++||.+|||+.|+|+||||
T Consensus       248 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f  327 (371)
T 4exu_A          248 LDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFF  327 (371)
T ss_dssp             HHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGG
T ss_pred             HHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCccc
Confidence            2222222111000                             01134557889999999999999999999999999999


Q ss_pred             hhhhccc
Q 001366          586 NEFQEVC  592 (1092)
Q Consensus       586 ~~~~~~~  592 (1092)
                      .......
T Consensus       328 ~~~~~~~  334 (371)
T 4exu_A          328 EPFRDPE  334 (371)
T ss_dssp             TTTCCGG
T ss_pred             ccCCCcc
Confidence            8765544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.3e-28  Score=290.62  Aligned_cols=263  Identities=20%  Similarity=0.310  Sum_probs=219.0

Q ss_pred             ecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCCCC---cccccceeeecCCCCeEEEEEecCCCCEEEEEECC
Q 001366          775 FNNSANVICSISFDRD-EDHFAAAGVSKKIKIFEFNALFNDS---VDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD  850 (1092)
Q Consensus       775 l~~h~~~V~sl~fspd-g~~latgg~D~~I~Iwd~~~~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D  850 (1092)
                      ...|...|++++|+|+ +.+||+|+.|+.|+||++.......   ..........+|...|.+++|+|++..+|++|+.|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            4578899999999997 7899999999999999987521111   01223345567999999999999844499999999


Q ss_pred             CcEEEEECCCCce-------EEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC---ceeeeEe-cCCceEEE
Q 001366          851 GVVKLWDACTGQT-------VSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK---NSLATIK-NIANVCCV  919 (1092)
Q Consensus       851 gtV~IWD~~tg~~-------i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~---~~l~~l~-~~~~V~sl  919 (1092)
                      |+|++||+.++..       ...+.+|...|.+++|+|.++.+|++++.|+.|++||++++   +.+..+. +...|+++
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  283 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL  283 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence            9999999987421       45677899999999999977889999999999999999987   5666664 67889999


Q ss_pred             EEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC-C-CEEEEEECCCeEEEEEcCCCCCCCC----
Q 001366          920 QFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD-S-GTLVTASTDNKLKLWDLKRTSHTGP----  993 (1092)
Q Consensus       920 ~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~-~-~~L~Sgs~Dg~I~vWDl~~~~~~~~----  993 (1092)
                      +|+|++..++++|+.||.|++||+++...++..+.+|...|.+++|++ + ..|++++.|+.|+|||+........    
T Consensus       284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  363 (430)
T 2xyi_A          284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA  363 (430)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence            999999878999999999999999987777889999999999999994 3 3699999999999999985321100    


Q ss_pred             --CCCceeEEEcCCCCCeEEEEEecCCC-EEEEEecCCcEEEEeCCC
Q 001366          994 --STNACSLTFSGHTNEKNFVGLSTADG-YIACGSESNEVYAYHRSL 1037 (1092)
Q Consensus       994 --~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~I~Iwd~~~ 1037 (1092)
                        .....+..+.+|...|++++|+|++. +|++++.||.|+||++..
T Consensus       364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence              01256778889999999999999999 899999999999998753

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.97  E-value=5.5e-31  Score=292.76  Aligned_cols=248  Identities=14%  Similarity=0.082  Sum_probs=169.8

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||+|.....-. .+..++.|+..............++...+...+|||++.++.... +...    
T Consensus        17 y~~~~~lg~G~~g~Vy~~~~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~----   90 (281)
T 1mp8_A           17 IELGRCIGEGQFGDVHQGIYMSPEN-PALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV----   90 (281)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCC---CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC----
T ss_pred             eEEEeEeeecCCeeEEEEEEecCCC-CceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCcc----
Confidence            4444433  4789999987632100 122344444433222333344556667788889999998776532 1111    


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                  ..+|||++|++|.+++...+..++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+
T Consensus        91 ------------~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~  158 (281)
T 1mp8_A           91 ------------WIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLG  158 (281)
T ss_dssp             ------------EEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEEC
T ss_pred             ------------EEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEEC
Confidence                        13899999999999998777678898999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.......                                                                   
T Consensus       159 Dfg~~~~~~~~~~-------------------------------------------------------------------  171 (281)
T 1mp8_A          159 DFGLSRYMEDSTY-------------------------------------------------------------------  171 (281)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             ccccccccCcccc-------------------------------------------------------------------
Confidence            9999876441100                                                                   


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~--  528 (1092)
                                                         .......+|+.|+|||.+.+..++.++|||||||++|||++ +  
T Consensus       172 -----------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~  216 (281)
T 1mp8_A          172 -----------------------------------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVK  216 (281)
T ss_dssp             ------------------------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCC
T ss_pred             -----------------------------------cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCC
Confidence                                               00013346788999999998899999999999999999996 4  


Q ss_pred             -CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 -FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       |....... .+..+.....++.....++.+.+|+.+||++||.+|||+.+++++
T Consensus       217 pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  270 (281)
T 1mp8_A          217 PFQGVKNND-VIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  270 (281)
T ss_dssp             TTTTCCGGG-HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCcCCHHH-HHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence             43322111 112222222233344567889999999999999999999999874

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2e-31  Score=307.09  Aligned_cols=257  Identities=18%  Similarity=0.179  Sum_probs=180.4

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC---chhhHhhhhhhhhhccC-CCCCCCccccceecC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM---PSDAALKAAGAMMVASN-ASPKPVGVGTAVVSN  284 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  284 (1092)
                      +..|.+.+.++  |.|.||++...... ..+..++.|++.....   ........++..++... .|||++.++.....+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~  131 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGH-DTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE  131 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSST-TTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccC-CCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeC
Confidence            34566655554  78999998752211 1255566665432211   11122233444455555 699999876655433


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                      ...+                ++|||++|++|.++|...+ .++..+++.++.||+.||.|||++||+||||||+||||+.
T Consensus       132 ~~~~----------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~  194 (355)
T 1vzo_A          132 TKLH----------------LILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDS  194 (355)
T ss_dssp             TEEE----------------EEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECT
T ss_pred             ceEE----------------EEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECC
Confidence            3322                3899999999999997764 4778799999999999999999999999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.+||+|||+++......                                                             
T Consensus       195 ~~~~kl~DfG~a~~~~~~~-------------------------------------------------------------  213 (355)
T 1vzo_A          195 NGHVVLTDFGLSKEFVADE-------------------------------------------------------------  213 (355)
T ss_dssp             TSCEEESCSSEEEECCGGG-------------------------------------------------------------
T ss_pred             CCcEEEeeCCCCeecccCC-------------------------------------------------------------
Confidence            9999999999987643100                                                             


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC--CCCCccccchhhhHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG--GVCTTSSNIYSLGVLF  522 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~--~~~t~~sDIwSLGvll  522 (1092)
                                                               .......+||+.|+|||++.+  ..++.++|||||||+|
T Consensus       214 -----------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il  252 (355)
T 1vzo_A          214 -----------------------------------------TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLM  252 (355)
T ss_dssp             -----------------------------------------GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHH
T ss_pred             -----------------------------------------CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHH
Confidence                                                     000114579999999999986  3478999999999999


Q ss_pred             HHHcCC---CCcH---HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          523 FELFGR---FDSE---RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       523 ~ell~~---f~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      |||+++   |...   .........+.. ..++.....++.+.+||.+||.+||.+||     ++.|+++||||...
T Consensus       253 ~ell~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~  328 (355)
T 1vzo_A          253 YELLTGASPFTVDGEKNSQAEISRRILK-SEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKI  328 (355)
T ss_dssp             HHHHHSSCTTSCTTSCCCHHHHHHHHHH-CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTC
T ss_pred             HHHHHCCCCCccCCccchHHHHHHHHhc-cCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcC
Confidence            999986   4321   111112211111 12233344578889999999999999999     99999999999864

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.97  E-value=9e-31  Score=299.09  Aligned_cols=252  Identities=19%  Similarity=0.145  Sum_probs=186.5

Q ss_pred             hhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          212 SEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       212 ~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      ..|.+.+.++  |.|.||++...+    .+..++.|+......  ........++..++...+|||++.++.....+...
T Consensus        41 ~~y~~~~~lg~G~~g~Vy~~~~~~----~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  116 (335)
T 2owb_A           41 RRYVRGRFLGKGGFAKCFEISDAD----TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFV  116 (335)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEECC----CCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeE
Confidence            3455444444  789999997633    244555555432221  12233445566778888999999877665533322


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      +                ++|||++|++|.++++..+ .++..+++.++.||+.||+|||++||+||||||+||+++.++.
T Consensus       117 ~----------------lv~e~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~  179 (335)
T 2owb_A          117 F----------------VVLELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLE  179 (335)
T ss_dssp             E----------------EEECCCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCC
T ss_pred             E----------------EEEecCCCCCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCC
Confidence            2                3899999999999997754 5778899999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||+++......                                                                
T Consensus       180 ~kl~Dfg~~~~~~~~~----------------------------------------------------------------  195 (335)
T 2owb_A          180 VKIGDFGLATKVEYDG----------------------------------------------------------------  195 (335)
T ss_dssp             EEECCCTTCEECCSTT----------------------------------------------------------------
T ss_pred             EEEeeccCceecccCc----------------------------------------------------------------
Confidence            9999999987643100                                                                


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                             .......||+.|+|||++.+..++.++|||||||+||||++
T Consensus       196 ---------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  236 (335)
T 2owb_A          196 ---------------------------------------ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV  236 (335)
T ss_dssp             ---------------------------------------CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHH
Confidence                                                   00113568999999999999999999999999999999998


Q ss_pred             C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          528 R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      +   |.................  ......++.+.+|+.+||++||.+|||+.|+|+||||....
T Consensus       237 g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~~~~~~~~  299 (335)
T 2owb_A          237 GKPPFETSCLKETYLRIKKNEY--SIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGY  299 (335)
T ss_dssp             SSCTTCCSSHHHHHHHHHHTCC--CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSC
T ss_pred             CcCCCCCCCHHHHHHHHhcCCC--CCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCccccCCC
Confidence            6   444332222222222211  11224478899999999999999999999999999998753

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.97  E-value=3.1e-31  Score=297.37  Aligned_cols=251  Identities=13%  Similarity=0.138  Sum_probs=180.7

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||++....    .+..++.|++...+ ........++..++...+|||++.++.....+...+   
T Consensus        21 y~i~~~lg~G~~g~V~~~~~~~----~~~~~aiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~---   92 (302)
T 2j7t_A           21 WEIVGELGDGAFGKVYKAKNKE----TGALAAAKVIETKS-EEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLW---   92 (302)
T ss_dssp             EEEEEEEECSTTCCEEEEEETT----TCCEEEEEEEC-----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEE---
T ss_pred             eeecceeccCCCeEEEEEEEcC----CCcEEEEEEecCCC-HHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEE---
Confidence            4444433  4789999998632    24455555553322 222334445666777889999998877655333222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   ++|||++|++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+|++
T Consensus        93 -------------lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~  159 (302)
T 2j7t_A           93 -------------IMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLA  159 (302)
T ss_dssp             -------------EEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEEC
T ss_pred             -------------EEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEE
Confidence                         3899999999999998766678888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||++.......                                                                    
T Consensus       160 Dfg~~~~~~~~~--------------------------------------------------------------------  171 (302)
T 2j7t_A          160 DFGVSAKNLKTL--------------------------------------------------------------------  171 (302)
T ss_dssp             CCHHHHHHHHHH--------------------------------------------------------------------
T ss_pred             ECCCCccccccc--------------------------------------------------------------------
Confidence            999875432100                                                                    


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-----CCCCCccccchhhhHHHHHHc
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-----GGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-----~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                         .......||+.|+|||++.     +..++.++|||||||++|||+
T Consensus       172 -----------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~  216 (302)
T 2j7t_A          172 -----------------------------------QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA  216 (302)
T ss_dssp             -----------------------------------HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHh
Confidence                                               0001346899999999984     577899999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCC-CCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRIL-PPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ++   |.................. .......++.+.+|+.+||++||.+|||+.++++||||...
T Consensus       217 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  282 (302)
T 2j7t_A          217 QIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSI  282 (302)
T ss_dssp             HSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTSTTTTTC
T ss_pred             cCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHHHHHHcccChhhCCCHHHHhcChHHhhh
Confidence            85   4333222222222222111 11223446789999999999999999999999999999875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=4.2e-29  Score=291.44  Aligned_cols=295  Identities=13%  Similarity=0.162  Sum_probs=202.1

Q ss_pred             CEEEEEEc---CCCCEEEEEeCCCcEEEEEcCCCCCCCc--ccccceeeecCCCCeEEEEEecC----------------
Q 001366          781 VICSISFD---RDEDHFAAAGVSKKIKIFEFNALFNDSV--DVYYPAVEMSNRSKLSCVCWNNY----------------  839 (1092)
Q Consensus       781 ~V~sl~fs---pdg~~latgg~D~~I~Iwd~~~~~~~~~--~~~~~~~~~~h~~~V~~v~~sp~----------------  839 (1092)
                      ...++.|.   |++..+++++.|+.|.+|+.........  ..........+...+.++.|++.                
T Consensus        17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (393)
T 4gq1_A           17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS   96 (393)
T ss_dssp             CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred             CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence            34556774   4444445555688999998753211111  01111222334555555555432                


Q ss_pred             ---CCCEEEEEECCCcEEEEECCCCceEE-----EeeccCccEEEEEEecC-------CCCEEEEEeCCCcEEEEecCCC
Q 001366          840 ---IKNYLASADYDGVVKLWDACTGQTVS-----HYIEHEKRAWSVDFSQV-------HPTKLASGSDDCSVKLWNINEK  904 (1092)
Q Consensus       840 ---~~~~LaSgs~DgtV~IWD~~tg~~i~-----~l~~h~~~V~sv~fsp~-------~~~~laSgs~Dg~I~iWDl~~~  904 (1092)
                         .+.+|++++.|++|+|||+.++....     .+.+|...|++|+|+|.       ++.+|||||.|++|+|||++++
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence               24579999999999999998886433     36789999999999872       5689999999999999999887


Q ss_pred             ceeee-EecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcce------------------------EEecCCCCC
Q 001366          905 NSLAT-IKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPW------------------------CVLAGHEKA  959 (1092)
Q Consensus       905 ~~l~~-l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~------------------------~~l~~H~~~  959 (1092)
                      .++.. +.+...|.+++|+|++.++|++|+.|++|++||+++.+...                        ....+|...
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  256 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS  256 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence            66554 45888999999999987799999999999999998764311                        123468889


Q ss_pred             eEEEEEc--CCCEEEEEECCCeEEEEEcCCCCCCCCC-----------CCceeEEEcCCCCCeEEEEEec--CCCEEEEE
Q 001366          960 VSYVKFL--DSGTLVTASTDNKLKLWDLKRTSHTGPS-----------TNACSLTFSGHTNEKNFVGLST--ADGYIACG 1024 (1092)
Q Consensus       960 V~~v~fs--~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~-----------~~~~~~~l~~h~~~V~~v~~sp--dg~~lasg 1024 (1092)
                      |.++.|.  ++..|++++.|+++++||+.........           ..........+...+. ..|+|  ++.++++|
T Consensus       257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sg  335 (393)
T 4gq1_A          257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-ACPHPRYMDYFATAH  335 (393)
T ss_dssp             CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC-CEECSSCTTEEEEEE
T ss_pred             ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee-EEEccCCCCEEEEEE
Confidence            9999996  6789999999999999999843211100           0001112222222222 23333  23467888


Q ss_pred             ecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1025 SESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1025 s~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +.|+.|++||...+..+...              ..|...|.+|+|+|||++||+|+.+| +.+|+|
T Consensus       336 s~Dg~V~lwd~~~~~~~~~~--------------~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          336 SQHGLIQLINTYEKDSNSIP--------------IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TTTTEEEEEETTCTTCCEEE--------------EECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEe--------------cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            89999999999888766543              24567899999999999999998665 666665

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=294.56  Aligned_cols=243  Identities=14%  Similarity=0.088  Sum_probs=180.7

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      ++.|.||++....    .+..++.|++....   ......++..++....|||++.++.....+...+            
T Consensus        40 G~~g~Vy~~~~~~----~~~~vaiK~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~------------  100 (314)
T 3com_A           40 GSYGSVYKAIHKE----TGQIVAIKQVPVES---DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLW------------  100 (314)
T ss_dssp             ---CEEEEEEETT----TCCEEEEEEEETTS---CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE------------
T ss_pred             CCCeEEEEEEECC----CCCEEEEEecCchH---HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEE------------
Confidence            3679999997632    24555666553322   2233455666778889999998777655433222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          ++|||++|++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++...
T Consensus       101 ----lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~  176 (314)
T 3com_A          101 ----IVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLT  176 (314)
T ss_dssp             ----EEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECB
T ss_pred             ----EEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhh
Confidence                3899999999999998666678888999999999999999999999999999999999999999999999887643


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ...                                                                             
T Consensus       177 ~~~-----------------------------------------------------------------------------  179 (314)
T 3com_A          177 DTM-----------------------------------------------------------------------------  179 (314)
T ss_dssp             TTB-----------------------------------------------------------------------------
T ss_pred             hhc-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAA  537 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~~~  537 (1092)
                                                .......||+.|+|||.+.+..++.++|||||||+||||+++   |........
T Consensus       180 --------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~  233 (314)
T 3com_A          180 --------------------------AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRA  233 (314)
T ss_dssp             --------------------------SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH
T ss_pred             --------------------------cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHH
Confidence                                      001134689999999999999999999999999999999986   433222222


Q ss_pred             HHHhccccC-CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          538 AMSDLRDRI-LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       538 ~~~~~~~~~-~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ......... ........++.+.+|+.+||++||.+|||+.++|+||||....
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~~~~~~~~  286 (314)
T 3com_A          234 IFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVRSAK  286 (314)
T ss_dssp             HHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHTCC
T ss_pred             HHHHhcCCCcccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhcCC
Confidence            222111111 1111223468899999999999999999999999999998754

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.97  E-value=7.7e-31  Score=291.36  Aligned_cols=245  Identities=16%  Similarity=0.158  Sum_probs=179.9

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCc-----hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-----SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ++.|.||++....    .+..++.|+.......     .......++..++...+|||++.+++........+       
T Consensus        16 G~~g~V~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~-------   84 (283)
T 3bhy_A           16 GQFAIVRKCRQKG----TGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV-------   84 (283)
T ss_dssp             CSSEEEEEEEETT----TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE-------
T ss_pred             cCceEEEEEEEcC----CCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE-------
Confidence            4789999997632    2455555554322211     12233455666778889999998776654322222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC----cEEEe
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN----QVKYI  371 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~----~vkl~  371 (1092)
                               .+|||++|++|.+++.... .++..+++.++.||+.||.|||++||+||||||+||+++.++    .+|++
T Consensus        85 ---------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~  154 (283)
T 3bhy_A           85 ---------LILELVSGGELFDFLAEKE-SLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLI  154 (283)
T ss_dssp             ---------EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEEC
T ss_pred             ---------EEEeecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEE
Confidence                     3899999999999997654 577889999999999999999999999999999999998877    89999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++......                                                                    
T Consensus       155 dfg~~~~~~~~~--------------------------------------------------------------------  166 (283)
T 3bhy_A          155 DFGIAHKIEAGN--------------------------------------------------------------------  166 (283)
T ss_dssp             CCTTCEECC-----------------------------------------------------------------------
T ss_pred             ecccceeccCCC--------------------------------------------------------------------
Confidence            999887643100                                                                    


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                          ......||+.|+|||++.+..++.++|||||||++|||+++   
T Consensus       167 ------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p  210 (283)
T 3bhy_A          167 ------------------------------------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP  210 (283)
T ss_dssp             -----------------------------------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             ------------------------------------cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCC
Confidence                                                01134688999999999999999999999999999999985   


Q ss_pred             CCcHHHHHHHHHh--ccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          529 FDSERALAAAMSD--LRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       529 f~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      |............  ......++.+...++.+.+|+.+||++||.+|||+.++|+||||...+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~  274 (283)
T 3bhy_A          211 FLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR  274 (283)
T ss_dssp             TCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHH
T ss_pred             CCCcchHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHH
Confidence            4443332222221  2111112223456788999999999999999999999999999987643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=2.7e-29  Score=296.76  Aligned_cols=273  Identities=12%  Similarity=0.119  Sum_probs=207.8

Q ss_pred             cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeee
Q 001366          747 RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDR-DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEM  825 (1092)
Q Consensus       747 ~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fsp-dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~  825 (1092)
                      .++++.||.|++|++...+....+   .+.+|...|++|+|+| ++.+|++|+.|++|+|||+.....     .......
T Consensus       135 lasGs~dg~i~lWd~~~~~~~~~~---~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~  206 (435)
T 4e54_B          135 VAVGSKGGDIMLWNFGIKDKPTFI---KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-----RVFASSD  206 (435)
T ss_dssp             EEEEETTSCEEEECSSCCSCCEEE---CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-----EEEECCS
T ss_pred             EEEEeCCCEEEEEECCCCCceeEE---EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-----eEEeccC
Confidence            447789999999998654433222   3568999999999998 689999999999999999864210     0001111


Q ss_pred             cCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 001366          826 SNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN  905 (1092)
Q Consensus       826 ~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~  905 (1092)
                      .+...+.+++|+|+ +.+|++|+.||+|++||+. ++.+..+.+|...|++++|+|....+|++|+.|++|+|||+++.+
T Consensus       207 ~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~  284 (435)
T 4e54_B          207 TINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR  284 (435)
T ss_dssp             SCSCCCCCEEEETT-TTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred             CCCccEEEEEECCC-CCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence            23456889999998 8999999999999999985 566778889999999999999556689999999999999999876


Q ss_pred             eeeeE----ecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCC------CeEEEEEc-CCCEEEEE
Q 001366          906 SLATI----KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK------AVSYVKFL-DSGTLVTA  974 (1092)
Q Consensus       906 ~l~~l----~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~------~V~~v~fs-~~~~L~Sg  974 (1092)
                      ....+    .|...|++++|+|++. +|++|+.|+.|++||++++..+ ..+..|..      .+..+.|+ .+..++++
T Consensus       285 ~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (435)
T 4e54_B          285 GKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCP-LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG  362 (435)
T ss_dssp             SSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSSSE-EEECCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred             ccceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCccc-eEEecccccccccceeEEEEEcCCCCEEEEE
Confidence            55443    3678899999999995 8999999999999999987653 34444432      12234454 33444444


Q ss_pred             E------------CCCeEEEEEcCCCCCCCCCCCceeEEEc-CCCCCeEEE-EEecCCCEEEEEecCCcEEEEeCCCCCc
Q 001366          975 S------------TDNKLKLWDLKRTSHTGPSTNACSLTFS-GHTNEKNFV-GLSTADGYIACGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       975 s------------~Dg~I~vWDl~~~~~~~~~~~~~~~~l~-~h~~~V~~v-~~spdg~~lasgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                      +            .++.|++||..        ++.++..+. +|...|.++ +|+|+|.+||+|+ |+.|+||+...+++
T Consensus       363 ~~~d~~~~~~~~~~~~~i~iwd~~--------~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          363 RYPDPNFKSCTPYELRTIDVFDGN--------SGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CCCCTTSCCSSTTCCCCEEEECSS--------SCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             EcCCCCeEEEEecCCCEEEEEECC--------CCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            3            34679999998        345566654 688888887 6999999999887 78999999887654

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.97  E-value=9e-31  Score=297.70  Aligned_cols=246  Identities=15%  Similarity=0.177  Sum_probs=174.5

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCC-CCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNA-SPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.++  |.|.||++...    ..+..++.|+...    .......++..++...+ |||++.+++.......   
T Consensus        37 ~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~----~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~---  105 (330)
T 3nsz_A           37 DYQLVRKLGRGKYSEVFEAINI----TNNEKVVVKILKP----VKKKKIKREIKILENLRGGPNIITLADIVKDPVS---  105 (330)
T ss_dssp             GEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEECS----CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTT---
T ss_pred             ceEEEEEecccCCeEEEEEEEC----CCCcEEEEEEecc----cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCC---
Confidence            355544444  78999999642    1245566666532    12233445555666665 9999987766442111   


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC-cE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN-QV  368 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~-~v  368 (1092)
                          ...+       .+|||+.|++|.++++.    ++..+++.++.||+.||+|||++||+||||||+|||++.++ .+
T Consensus       106 ----~~~~-------lv~e~~~~~~l~~~~~~----~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~  170 (330)
T 3nsz_A          106 ----RTPA-------LVFEHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKL  170 (330)
T ss_dssp             ----CCEE-------EEEECCCCCCHHHHGGG----CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEE
T ss_pred             ----CceE-------EEEeccCchhHHHHHHh----CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEE
Confidence                1111       37999999999999853    67779999999999999999999999999999999999777 89


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.....                                                                  
T Consensus       171 kl~Dfg~a~~~~~~------------------------------------------------------------------  184 (330)
T 3nsz_A          171 RLIDWGLAEFYHPG------------------------------------------------------------------  184 (330)
T ss_dssp             EECCCTTCEECCTT------------------------------------------------------------------
T ss_pred             EEEeCCCceEcCCC------------------------------------------------------------------
Confidence            99999998764310                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                            .......||++|+|||++.+ ..++.++|||||||+||||++
T Consensus       185 --------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~  226 (330)
T 3nsz_A          185 --------------------------------------QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF  226 (330)
T ss_dssp             --------------------------------------CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------CccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHh
Confidence                                                  00114568999999999987 678999999999999999998


Q ss_pred             C---CC-cHHHHHHHHH---hc---------c--ccCCC---------------------CCCCCCChhHHHHHHhcccc
Q 001366          528 R---FD-SERALAAAMS---DL---------R--DRILP---------------------PSFLSENPKEAGFCLWQLHP  568 (1092)
Q Consensus       528 ~---f~-~~~~~~~~~~---~~---------~--~~~~p---------------------~~~~~~~~~~~~li~~lL~~  568 (1092)
                      +   |. ..........   .+         .  ....+                     ......++.+.+||.+||++
T Consensus       227 g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~  306 (330)
T 3nsz_A          227 RKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRY  306 (330)
T ss_dssp             TCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCS
T ss_pred             CCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcC
Confidence            5   31 1111111100   00         0  00001                     11112578899999999999


Q ss_pred             CCCCCCCHHHHhhhhhhhhh
Q 001366          569 EPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       569 dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ||.+|||++|+|+||||...
T Consensus       307 dP~~Rpta~e~l~hp~f~~~  326 (330)
T 3nsz_A          307 DHQSRLTAREAMEHPYFYTV  326 (330)
T ss_dssp             SGGGSCCHHHHHTSGGGTTC
T ss_pred             CcccCCCHHHHhcCccHhhh
Confidence            99999999999999999875

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.97  E-value=2.9e-31  Score=305.54  Aligned_cols=260  Identities=17%  Similarity=0.131  Sum_probs=172.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.++  |.|.||++....    .+..++.|++.....  ......++...+...+|||++.++..........  
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~--~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~--   95 (360)
T 3e3p_A           24 RFQVERMAGQGTFGTVQLGKEKS----TGMSVAIKKVIQDPR--FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD--   95 (360)
T ss_dssp             TEEEC----------CEEEEETT----TCCEEEEEEEECCTT--CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSC--
T ss_pred             ceEEEEEEecCCCeEEEEEEECC----CCCEEEEEEEecCcc--ccHHHHHHHHHHHhcCCCCcccHHHhhhcccccc--
Confidence            455554444  789999997622    245566665432211  1122334444456678999998766644322111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHh---hcCCCCCHHHHHHHHHHHHHHHHHhh--hcCccccCCCCCCeEEcc-
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLN---ARGHKGKRIECLYIFRQIVALVDYHH--TQGVTFLDLKPSSFKLLQ-  364 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~---~~~~~~~~~~~~~i~~qil~~l~~lH--s~gIvHrDLKP~Nill~~-  364 (1092)
                       .... .     ..++|||++|+ |.+.+.   .....++...+..++.||+.||.|||  ++||+||||||+||||+. 
T Consensus        96 -~~~~-~-----~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~  167 (360)
T 3e3p_A           96 -RRDI-Y-----LNVVMEYVPDT-LHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEA  167 (360)
T ss_dssp             -TTCE-E-----EEEEEECCSCB-HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETT
T ss_pred             -ccce-e-----EEEEeeccccc-HHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCC
Confidence             0000 0     11379999974 444443   23456778899999999999999999  999999999999999997 


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.+||+|||+++......                                                             
T Consensus       168 ~~~~kl~Dfg~a~~~~~~~-------------------------------------------------------------  186 (360)
T 3e3p_A          168 DGTLKLCDFGSAKKLSPSE-------------------------------------------------------------  186 (360)
T ss_dssp             TTEEEECCCTTCBCCCTTS-------------------------------------------------------------
T ss_pred             CCcEEEeeCCCceecCCCC-------------------------------------------------------------
Confidence            8999999999987643100                                                             


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~  523 (1092)
                                                                 ......||++|+|||++.+. .++.++|||||||+||
T Consensus       187 -------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~  223 (360)
T 3e3p_A          187 -------------------------------------------PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFA  223 (360)
T ss_dssp             -------------------------------------------CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred             -------------------------------------------CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHH
Confidence                                                       01145689999999999774 4899999999999999


Q ss_pred             HHcCC---CCcHHHHHHHHHhcccc------------------------------CCCCCCCCCChhHHHHHHhccccCC
Q 001366          524 ELFGR---FDSERALAAAMSDLRDR------------------------------ILPPSFLSENPKEAGFCLWQLHPEP  570 (1092)
Q Consensus       524 ell~~---f~~~~~~~~~~~~~~~~------------------------------~~p~~~~~~~~~~~~li~~lL~~dP  570 (1092)
                      ||+++   |.+...........+..                              .++......++.+.+|+.+||++||
T Consensus       224 ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  303 (360)
T 3e3p_A          224 EMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLP  303 (360)
T ss_dssp             HHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSG
T ss_pred             HHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCc
Confidence            99986   54433332222222110                              0111222345778999999999999


Q ss_pred             CCCCCHHHHhhhhhhhhhhccc
Q 001366          571 LSRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       571 ~~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                      .+|||+.|+|+||||.+.....
T Consensus       304 ~~Rpt~~e~l~hp~f~~~~~~~  325 (360)
T 3e3p_A          304 EERMKPYEALCHPYFDELHDPA  325 (360)
T ss_dssp             GGSCCHHHHTTSGGGGGGGCTT
T ss_pred             cccCCHHHHhcCccccccCCcc
Confidence            9999999999999999876544

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.97  E-value=7.4e-31  Score=304.24  Aligned_cols=258  Identities=15%  Similarity=0.180  Sum_probs=176.4

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.++  |.|.||++...    ..+..++.|+..... .........++..++...+|||++.++.......... 
T Consensus        26 ~y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~-  100 (371)
T 2xrw_A           26 RYQNLKPIGSGAQGIVCAAYDA----ILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLE-  100 (371)
T ss_dssp             TEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTT-
T ss_pred             heeEeeeeEecCCEEEEEEEEC----CCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccc-
Confidence            455555554  78999999652    124556666553322 2223344556777888889999998776644322111 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                          ....     ..++|||++| +|.+++..   .++..++..++.||+.||.|||++||+||||||+|||++.++.+|
T Consensus       101 ----~~~~-----~~lv~e~~~~-~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~k  167 (371)
T 2xrw_A          101 ----EFQD-----VYIVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLK  167 (371)
T ss_dssp             ----TCCE-----EEEEEECCSE-EHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEE
T ss_pred             ----cccc-----eEEEEEcCCC-CHHHHHhh---ccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEE
Confidence                0000     1248999986 79998863   377889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++.....                                                                   
T Consensus       168 l~Dfg~a~~~~~~-------------------------------------------------------------------  180 (371)
T 2xrw_A          168 ILDFGLARTAGTS-------------------------------------------------------------------  180 (371)
T ss_dssp             ECCCCC--------------------------------------------------------------------------
T ss_pred             EEEeecccccccc-------------------------------------------------------------------
Confidence            9999998753310                                                                   


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ...+..+||+.|+|||++.+..++.++|||||||+||||+++ 
T Consensus       181 -------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~  223 (371)
T 2xrw_A          181 -------------------------------------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG  223 (371)
T ss_dssp             ----------------------------------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCC
Confidence                                                 001145789999999999999999999999999999999985 


Q ss_pred             --CCcHHHHHHHHHhccccCCC-------------------CCC--------------CC-------CChhHHHHHHhcc
Q 001366          529 --FDSERALAAAMSDLRDRILP-------------------PSF--------------LS-------ENPKEAGFCLWQL  566 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p-------------------~~~--------------~~-------~~~~~~~li~~lL  566 (1092)
                        |.+..........+.....|                   +.+              +.       .++.+.+|+.+||
T Consensus       224 ~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL  303 (371)
T 2xrw_A          224 VLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKML  303 (371)
T ss_dssp             CSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHC
Confidence              65544433333222211100                   000              00       1356789999999


Q ss_pred             ccCCCCCCCHHHHhhhhhhhhhhccc
Q 001366          567 HPEPLSRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       567 ~~dP~~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                      .+||.+|||++|+|+||||.......
T Consensus       304 ~~dP~~R~t~~e~l~hp~~~~~~~~~  329 (371)
T 2xrw_A          304 VIDASKRISVDEALQHPYINVWYDPS  329 (371)
T ss_dssp             CSSGGGSCCHHHHHHSHHHHTTCCHH
T ss_pred             cCChhhCCCHHHHhCCcchhhhcCcc
Confidence            99999999999999999998654433

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.8e-28  Score=286.47  Aligned_cols=288  Identities=15%  Similarity=0.050  Sum_probs=220.8

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC---C-CCccccc-----------------------------------
Q 001366          780 NVICSISFDRDEDHFAAAGVSKKIKIFEFNALF---N-DSVDVYY-----------------------------------  820 (1092)
Q Consensus       780 ~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~---~-~~~~~~~-----------------------------------  820 (1092)
                      .++.+++|+|+|++|+++ .++.|++||+.+..   . .......                                   
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478899999999977666 57899999986532   0 0000000                                   


Q ss_pred             -----------ceeeecCCCCeEEEEEecCCCCEE-EEEECCCcEEEEECC--CCceEEEee--ccCccEEEEEEecCCC
Q 001366          821 -----------PAVEMSNRSKLSCVCWNNYIKNYL-ASADYDGVVKLWDAC--TGQTVSHYI--EHEKRAWSVDFSQVHP  884 (1092)
Q Consensus       821 -----------~~~~~~h~~~V~~v~~sp~~~~~L-aSgs~DgtV~IWD~~--tg~~i~~l~--~h~~~V~sv~fsp~~~  884 (1092)
                                 ......|...|.+++|+|+ +.+| ++|+.||+|+|||+.  +++.+..+.  .|...|++++|+| ++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~  161 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DD  161 (450)
T ss_dssp             ----------------CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CC
Confidence                       0001134557999999998 7775 899999999999999  888888886  5678899999999 88


Q ss_pred             CEEEEEeCCCcEEEEecCCCceee----eEe-cCCceEEEEEccC---CCeEEEEEECCCeEEEEEcCCCCcceEEecCC
Q 001366          885 TKLASGSDDCSVKLWNINEKNSLA----TIK-NIANVCCVQFSAH---SSHLLAFGSADYRTYCYDLRNARAPWCVLAGH  956 (1092)
Q Consensus       885 ~~laSgs~Dg~I~iWDl~~~~~l~----~l~-~~~~V~sl~fsp~---~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H  956 (1092)
                      .+|++|+.|+.|++||+.++....    .+. |...|++++|+|+   + .+|++|+.|+.|++||++++......+.+|
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence            999999999999999999877553    444 6788999999999   6 599999999999999999876544446799


Q ss_pred             CCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc-------------------------CCCCCeEE
Q 001366          957 EKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS-------------------------GHTNEKNF 1011 (1092)
Q Consensus       957 ~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~-------------------------~h~~~V~~ 1011 (1092)
                      ...|.+++|+++.+|++++.|++|++||+.+        +.++..+.                         .+...|..
T Consensus       241 ~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          241 KHFVSSICCGKDYLLLSAGGDDKIFAWDWKT--------GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             SSCEEEEEECSTTEEEEEESSSEEEEEETTT--------CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             CCceEEEEECCCCEEEEEeCCCeEEEEECCC--------CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence            9999999999777999999999999999984        34455554                         23457899


Q ss_pred             EEEecCCCEEEEEe-cCCcEEEEeC--CCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec------
Q 001366         1012 VGLSTADGYIACGS-ESNEVYAYHR--SLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS------ 1082 (1092)
Q Consensus      1012 v~~spdg~~lasgs-~Dg~I~Iwd~--~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~------ 1082 (1092)
                      ++|+|++++|++++ .|+.|+||++  ..+..+....           ....| ..|.+++|+|++.++++++.      
T Consensus       313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~-----------~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~  380 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQ-----------IITFP-YNVISLSAHNDEFQVTLDNKESSGVQ  380 (450)
T ss_dssp             EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEE-----------EEECS-SCEEEEEEETTEEEEEECCTTCCSSC
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeecc-----------EeccC-CceEEEEecCCcEEEEEecccCCCCC
Confidence            99999999999999 8999999998  4442222111           11234 67999999996544444443      


Q ss_pred             CCeEEEEEc
Q 001366         1083 SGCIKVLQM 1091 (1092)
Q Consensus      1083 DG~V~vW~l 1091 (1092)
                      +..|.||.+
T Consensus       381 ~~~i~v~~~  389 (450)
T 2vdu_B          381 KNFAKFIEY  389 (450)
T ss_dssp             CCSEEEEEE
T ss_pred             CcceEEEEE
Confidence            456888864

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=7.5e-31  Score=300.31  Aligned_cols=253  Identities=12%  Similarity=0.070  Sum_probs=179.5

Q ss_pred             HHHhhhc--cccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.+  +|.|.||++..... -...+..++.|+..............++..++... .|||++.++.....+...+ 
T Consensus        47 y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~-  125 (344)
T 1rjb_A           47 LEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIY-  125 (344)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE-
T ss_pred             ceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccE-
Confidence            4444443  47899999874110 01113445555553322222334455666667777 8999998877655433322 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCC----------------------CCCHHHHHHHHHHHHHHHHHhhh
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH----------------------KGKRIECLYIFRQIVALVDYHHT  347 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~----------------------~~~~~~~~~i~~qil~~l~~lHs  347 (1092)
                                     ++|||++|++|.++|.....                      .++..+++.++.||+.||+|||+
T Consensus       126 ---------------lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  190 (344)
T 1rjb_A          126 ---------------LIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF  190 (344)
T ss_dssp             ---------------EEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------EEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence                           38999999999999976543                      26788899999999999999999


Q ss_pred             cCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccc
Q 001366          348 QGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWW  427 (1092)
Q Consensus       348 ~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (1092)
                      +||+||||||+|||++.++.+||+|||+++.......                                           
T Consensus       191 ~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~-------------------------------------------  227 (344)
T 1rjb_A          191 KSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSN-------------------------------------------  227 (344)
T ss_dssp             TTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTT-------------------------------------------
T ss_pred             CCcccCCCChhhEEEcCCCcEEeCCCccCcccccCcc-------------------------------------------
Confidence            9999999999999999999999999999876541100                                           


Q ss_pred             ccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC
Q 001366          428 SLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG  507 (1092)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~  507 (1092)
                                                                                ........||+.|+|||.+.+.
T Consensus       228 ----------------------------------------------------------~~~~~~~~~t~~y~aPE~~~~~  249 (344)
T 1rjb_A          228 ----------------------------------------------------------YVVRGNARLPVKWMAPESLFEG  249 (344)
T ss_dssp             ----------------------------------------------------------SEEETTEEECGGGCCHHHHHHC
T ss_pred             ----------------------------------------------------------ceeccCccCccCccCHHHhccC
Confidence                                                                      0001134578899999999999


Q ss_pred             CCCccccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          508 VCTTSSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       508 ~~t~~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      .++.++|||||||+||||++ +   |............+.....++.....++.+.+|+.+||++||.+|||+.+++++.
T Consensus       250 ~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  329 (344)
T 1rjb_A          250 IYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL  329 (344)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            99999999999999999997 5   4332222222233333333334445678899999999999999999999999875

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.97  E-value=6.7e-31  Score=305.32  Aligned_cols=248  Identities=16%  Similarity=0.137  Sum_probs=180.7

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.+.+.+  ++.|.||+|....    .+..++.|+..............++..++...+|||++.++.....+...+  
T Consensus       115 ~~~~~~~lG~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~--  188 (377)
T 3cbl_A          115 DLVLGEQIGRGNFGEVFSGRLRA----DNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIY--  188 (377)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETT----TCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCE--
T ss_pred             HeEEeeEeccCCCCeEEEEEEec----CCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcE--
Confidence            44444444  4789999998731    245566665533222222234456677788889999998877654333333  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    ++|||++|++|.++|+..+..++..+++.++.||+.||+|||++||+||||||+|||++.++.+||
T Consensus       189 --------------lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl  254 (377)
T 3cbl_A          189 --------------IVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKI  254 (377)
T ss_dssp             --------------EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEE
T ss_pred             --------------EEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEE
Confidence                          389999999999999877667888899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++...+....                                                                 
T Consensus       255 ~DfG~s~~~~~~~~~-----------------------------------------------------------------  269 (377)
T 3cbl_A          255 SDFGMSREEADGVYA-----------------------------------------------------------------  269 (377)
T ss_dssp             CCGGGCEECTTSEEE-----------------------------------------------------------------
T ss_pred             CcCCCceecCCCcee-----------------------------------------------------------------
Confidence            999998763310000                                                                 


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......++..|+|||.+.+..++.++|||||||+||||++ + 
T Consensus       270 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~  313 (377)
T 3cbl_A          270 ------------------------------------ASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGA  313 (377)
T ss_dssp             ------------------------------------CCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSC
T ss_pred             ------------------------------------ecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence                                                00002235677999999998899999999999999999997 4 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                        |........ ...+.....++.....++.+.+|+.+||+.||.+|||+.+|++.
T Consensus       314 ~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~  368 (377)
T 3cbl_A          314 SPYPNLSNQQT-REFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQE  368 (377)
T ss_dssp             CSSTTSCHHHH-HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCHHHH-HHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHH
Confidence              433322222 22222222223333457888999999999999999999999863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=2.5e-28  Score=288.16  Aligned_cols=272  Identities=18%  Similarity=0.336  Sum_probs=224.0

Q ss_pred             CCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccccccee
Q 001366          744 PTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAV  823 (1092)
Q Consensus       744 ~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~  823 (1092)
                      ....++++.|+.+++|+....+...     .+.+|...|.+++|  ++++|++|+.|++|+|||+.+.       .....
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~-------~~~~~  208 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNTLECKR-----ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG-------EMLNT  208 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSCCEEE-----EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC-------CEEEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeEEE-----EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC-------cEEEE
Confidence            3445678899999999988766544     35589999999998  7889999999999999998752       22234


Q ss_pred             eecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceE---EEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEe
Q 001366          824 EMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTV---SHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN  900 (1092)
Q Consensus       824 ~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i---~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWD  900 (1092)
                      ..+|...|.+++|++   ..|++|+.||+|++||+.++..+   ..+.+|...|.+++|   ++..+++|+.|++|++||
T Consensus       209 ~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd  282 (435)
T 1p22_A          209 LIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWN  282 (435)
T ss_dssp             ECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEE
T ss_pred             EcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEE
Confidence            457899999999975   49999999999999999987654   677899999999999   457999999999999999


Q ss_pred             cCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCe
Q 001366          901 INEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNK  979 (1092)
Q Consensus       901 l~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~  979 (1092)
                      +++++++.++. +...|.+++|+  + .++++|+.||.|++||+++++ .+..+.+|...|.+++| ++.+|++|+.||.
T Consensus       283 ~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~  357 (435)
T 1p22_A          283 TSTCEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRF-DNKRIVSGAYDGK  357 (435)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEC-CSSEEEEEETTSC
T ss_pred             CCcCcEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC-EEEEEeCCcCcEEEEEe-cCCEEEEEeCCCc
Confidence            99999999888 67789999995  3 489999999999999999875 46788999999999999 6889999999999


Q ss_pred             EEEEEcCCCCCCC-CCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCcee
Q 001366          980 LKLWDLKRTSHTG-PSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPIT 1042 (1092)
Q Consensus       980 I~vWDl~~~~~~~-~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~ 1042 (1092)
                      |++||+....... .....++..+.+|...|++++|  ++.+|++|+.||.|++||+.......
T Consensus       358 i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          358 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--------
T ss_pred             EEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence            9999997433111 1112378889999999999999  78899999999999999987765443

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=290.72  Aligned_cols=247  Identities=18%  Similarity=0.135  Sum_probs=178.2

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|.||+|....    .+..++.|+....+ ........++..++...+|||++.++.....+...+          
T Consensus        31 g~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~----------   95 (295)
T 2clq_A           31 GKGTYGIVYAGRDLS----NQVRIAIKEIPERD-SRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIK----------   95 (295)
T ss_dssp             EECSSSEEEEEEETT----TCCEEEEEEEECCC-C---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE----------
T ss_pred             eecCcEEEEEEEECC----CCeEEEEEEccCCc-hHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEE----------
Confidence            446789999998521    24455665543322 222234455667788889999998777654433322          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc-CCcEEEecccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG--HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ-SNQVKYIGPII  375 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~--~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~-~~~vkl~Dfg~  375 (1092)
                            ++|||++|++|.+++....  ...+...+..++.||+.||+|||++||+||||||+||+++. ++.+||+|||+
T Consensus        96 ------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~  169 (295)
T 2clq_A           96 ------IFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGT  169 (295)
T ss_dssp             ------EEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTT
T ss_pred             ------EEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeeccc
Confidence                  3899999999999997653  24567788899999999999999999999999999999987 89999999998


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++......                                                                        
T Consensus       170 ~~~~~~~~------------------------------------------------------------------------  177 (295)
T 2clq_A          170 SKRLAGIN------------------------------------------------------------------------  177 (295)
T ss_dssp             CEESCC--------------------------------------------------------------------------
T ss_pred             ccccCCCC------------------------------------------------------------------------
Confidence            87643100                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC--CCccccchhhhHHHHHHcCC---CC
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV--CTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~--~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                     .......||+.|+|||++.+..  ++.++|||||||+||||+++   |.
T Consensus       178 -------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  226 (295)
T 2clq_A          178 -------------------------------PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFY  226 (295)
T ss_dssp             ----------------------------------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTG
T ss_pred             -------------------------------CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCcc
Confidence                                           0001346899999999997754  89999999999999999986   32


Q ss_pred             cHHHH-HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          531 SERAL-AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       531 ~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      ..... ............++.....++.+.+|+.+||++||.+||++.++|+||||....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~  286 (295)
T 2clq_A          227 ELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLKVSS  286 (295)
T ss_dssp             GGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTSGGGCC--
T ss_pred             CCCchhHHHHhhccccccccccccCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhhcc
Confidence            22111 111111122222333345678899999999999999999999999999998653

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.97  E-value=1.5e-30  Score=291.63  Aligned_cols=252  Identities=16%  Similarity=0.173  Sum_probs=183.5

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccC-c-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-P-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.++  |.|.||++...    ..+..++.|+...... . .......++...+...+|||++.+++....+...+ 
T Consensus        13 y~i~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~-   87 (294)
T 4eqm_A           13 YKIVDKLGGGGMSTVYLAEDT----ILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYY-   87 (294)
T ss_dssp             EEEEEEEEEETTEEEEEEEET----TTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEE-
T ss_pred             EEEEEEEccCCCEEEEEEEEC----CCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEE-
Confidence            55555554  78999999752    1245566655422222 2 12234456667788889999998877654333333 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     .+|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+||+++.++.+|
T Consensus        88 ---------------lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~k  151 (294)
T 4eqm_A           88 ---------------LVMEYIEGPTLSEYIESHG-PLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLK  151 (294)
T ss_dssp             ---------------EEEECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEE
T ss_pred             ---------------EEEeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEE
Confidence                           3899999999999998765 477889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++......                                                                  
T Consensus       152 l~Dfg~~~~~~~~~------------------------------------------------------------------  165 (294)
T 4eqm_A          152 IFDFGIAKALSETS------------------------------------------------------------------  165 (294)
T ss_dssp             ECCCSSSTTC----------------------------------------------------------------------
T ss_pred             EEeCCCcccccccc------------------------------------------------------------------
Confidence            99999987643100                                                                  


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                          .......+||+.|+|||++.+..++.++|||||||++|||+++ 
T Consensus       166 ------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~  209 (294)
T 4eqm_A          166 ------------------------------------LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGE  209 (294)
T ss_dssp             ---------------------------------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             ------------------------------------ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCC
Confidence                                                0001145789999999999999999999999999999999985 


Q ss_pred             --CCcHHHHHHHHHhccccCCC---CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILP---PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                        |............+.....+   ......++.+.+++.+||++||.+||+..+.+.++|..-.
T Consensus       210 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~  274 (294)
T 4eqm_A          210 PPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVL  274 (294)
T ss_dssp             CSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSS
T ss_pred             CCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHH
Confidence              65555555545444443222   1234567889999999999999999977777777776543

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.9e-30  Score=290.32  Aligned_cols=249  Identities=15%  Similarity=0.093  Sum_probs=178.8

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|.||+|...+.-.. +..++.|+..............++..++...+|||++.++........        .+. 
T Consensus        30 g~G~~g~Vy~~~~~~~~~~-~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~--------~~~-   99 (298)
T 3pls_A           30 GKGHFGVVYHGEYIDQAQN-RIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEG--------LPH-   99 (298)
T ss_dssp             EEETTEEEEEEEEECSSSC-EEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS--------CCE-
T ss_pred             ccCCCceEEEEEEecCCCc-eeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCC--------CcE-
Confidence            3468899999874221111 223444544332233333445567777888899999987765432211        111 


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+|+|+.|++|.+++...+..++..+++.++.||+.||.|||++||+||||||+||+++.++.+|++|||+++.
T Consensus       100 ------~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~  173 (298)
T 3pls_A          100 ------VLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARD  173 (298)
T ss_dssp             ------EEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCT
T ss_pred             ------EEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCccc
Confidence                  38999999999999988777788889999999999999999999999999999999999999999999999876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .......                                                                         
T Consensus       174 ~~~~~~~-------------------------------------------------------------------------  180 (298)
T 3pls_A          174 ILDREYY-------------------------------------------------------------------------  180 (298)
T ss_dssp             TTTGGGG-------------------------------------------------------------------------
T ss_pred             ccCCccc-------------------------------------------------------------------------
Confidence            4411000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-CC--cHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-FD--SERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-f~--~~~~~  535 (1092)
                                                .........+|+.|+|||.+.+..++.++|||||||++|||+++ .+  .....
T Consensus       181 --------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~  234 (298)
T 3pls_A          181 --------------------------SVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDP  234 (298)
T ss_dssp             --------------------------CSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCG
T ss_pred             --------------------------ccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCH
Confidence                                      00001144678899999999999999999999999999999983 21  11111


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ......+.....++.....++.+.+|+.+||++||.+|||+.++++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  281 (298)
T 3pls_A          235 FDLTHFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGE  281 (298)
T ss_dssp             GGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHhhcCCCCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            12222222222333344457889999999999999999999999874

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.96  E-value=1.8e-30  Score=296.77  Aligned_cols=252  Identities=15%  Similarity=0.085  Sum_probs=183.0

Q ss_pred             hHHHhhhc--cccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.+  +|.|.||++...+.. ...+..++.|+..............++..++...+|||++.++.....+...+ 
T Consensus        48 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~-  126 (343)
T 1luf_A           48 NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMC-  126 (343)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCE-
T ss_pred             HCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceE-
Confidence            34444444  378999999863211 01235566666543333333344556777788889999998776644332222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcC-----------------------CCCCHHHHHHHHHHHHHHHHHhh
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-----------------------HKGKRIECLYIFRQIVALVDYHH  346 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-----------------------~~~~~~~~~~i~~qil~~l~~lH  346 (1092)
                                     ++|||++|++|.++|....                       ..++..+++.|+.||+.||.|||
T Consensus       127 ---------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH  191 (343)
T 1luf_A          127 ---------------LLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS  191 (343)
T ss_dssp             ---------------EEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------EEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                           3899999999999997642                       46788899999999999999999


Q ss_pred             hcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccc
Q 001366          347 TQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRW  426 (1092)
Q Consensus       347 s~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (1092)
                      ++||+||||||+|||++.++.+||+|||+++.......                                          
T Consensus       192 ~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~------------------------------------------  229 (343)
T 1luf_A          192 ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY------------------------------------------  229 (343)
T ss_dssp             HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGC------------------------------------------
T ss_pred             hCCeecCCCCcceEEECCCCeEEEeecCCCcccccCcc------------------------------------------
Confidence            99999999999999999999999999999876541100                                          


Q ss_pred             cccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC
Q 001366          427 WSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG  506 (1092)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~  506 (1092)
                                                                                 ........||+.|+|||++.+
T Consensus       230 -----------------------------------------------------------~~~~~~~~~t~~y~aPE~~~~  250 (343)
T 1luf_A          230 -----------------------------------------------------------YKADGNDAIPIRWMPPESIFY  250 (343)
T ss_dssp             -----------------------------------------------------------BC----CCBCGGGCCHHHHHH
T ss_pred             -----------------------------------------------------------ccccCCCcccceecChhhhcc
Confidence                                                                       000113457889999999999


Q ss_pred             CCCCccccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          507 GVCTTSSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       507 ~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ..++.++|||||||++|||++ +   |...... .....+.....++.....++.+.+|+.+||+.||.+||++.+++++
T Consensus       251 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~  329 (343)
T 1luf_A          251 NRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHE-EVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRI  329 (343)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCcCcccccHHHHHHHHHHHhcCCCcCCCCChH-HHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHH
Confidence            899999999999999999998 4   4333222 2222333333333344567889999999999999999999999874

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.96  E-value=8.4e-31  Score=295.55  Aligned_cols=249  Identities=11%  Similarity=0.145  Sum_probs=177.0

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||++....    .+..++.|+.... .........++..++...+|||++.++.....+...+           
T Consensus        20 ~G~~g~V~~~~~~~----~~~~va~K~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~-----------   83 (310)
T 3s95_A           20 KGCFGQAIKVTHRE----TGEVMVMKELIRF-DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLN-----------   83 (310)
T ss_dssp             CCSSEEEEEEEETT----TCCEEEEEEESCC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE-----------
T ss_pred             CCCCEEEEEEEECC----CCcEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeE-----------
Confidence            35789999997632    2445555544222 2223344556777888889999999877755443333           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|||++|++|.++++.....++..+++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        84 -----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  158 (310)
T 3s95_A           84 -----FITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLM  158 (310)
T ss_dssp             -----EEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEEC
T ss_pred             -----EEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceec
Confidence                 389999999999999887777888899999999999999999999999999999999999999999999999875


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ..........                                                                      
T Consensus       159 ~~~~~~~~~~----------------------------------------------------------------------  168 (310)
T 3s95_A          159 VDEKTQPEGL----------------------------------------------------------------------  168 (310)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cccccccccc----------------------------------------------------------------------
Confidence            5211100000                                                                      


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHHH-----
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERA-----  534 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~~-----  534 (1092)
                                         ..............+||+.|+|||++.+..++.++|||||||+||||+++......     
T Consensus       169 -------------------~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~  229 (310)
T 3s95_A          169 -------------------RSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRT  229 (310)
T ss_dssp             ------------------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBC
T ss_pred             -------------------ccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhH
Confidence                               00000001111256899999999999999999999999999999999975221110     


Q ss_pred             --HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          535 --LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       535 --~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                        .............|   ...++.+.+|+.+||+.||.+|||+.++++
T Consensus       230 ~~~~~~~~~~~~~~~~---~~~~~~l~~li~~~l~~dP~~Rps~~~l~~  275 (310)
T 3s95_A          230 MDFGLNVRGFLDRYCP---PNCPPSFFPITVRCCDLDPEKRPSFVKLEH  275 (310)
T ss_dssp             TTSSBCHHHHHHHTCC---TTCCTTHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHhhhhhccccccCC---CCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence              00000001111122   334678999999999999999999999987

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.96  E-value=2.1e-30  Score=300.73  Aligned_cols=244  Identities=13%  Similarity=0.115  Sum_probs=169.1

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||+|.....-. .+..++.|+..............++..++...+|||++.++.........+           
T Consensus        55 ~G~fg~Vy~~~~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~-----------  122 (373)
T 2qol_A           55 AGEFGEVCSGRLKLPSK-KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVM-----------  122 (373)
T ss_dssp             ECSSSEEEEC-CBCTTS-CBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE-----------
T ss_pred             eCCCeEEEEEEEecCCC-CceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceE-----------
Confidence            34789999998631111 134455555432222223344556777888889999998776644322222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           ++|||++|++|.++|...+..++..+++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||+++..
T Consensus       123 -----lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  197 (373)
T 2qol_A          123 -----IVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVL  197 (373)
T ss_dssp             -----EEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             -----EEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCcccccc
Confidence                 389999999999999887777899899999999999999999999999999999999999999999999998765


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ......                                                                          
T Consensus       198 ~~~~~~--------------------------------------------------------------------------  203 (373)
T 2qol_A          198 EDDPEA--------------------------------------------------------------------------  203 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCcc--------------------------------------------------------------------------
Confidence            411000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                ........+|..|+|||.+.+..++.++|||||||+||||++ +   |......
T Consensus       204 --------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~  257 (373)
T 2qol_A          204 --------------------------AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ  257 (373)
T ss_dssp             ------------------------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH
T ss_pred             --------------------------ceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence                                      000002345778999999999999999999999999999987 4   4332222


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      . ....+.....++.....++.+.+|+.+||++||.+||++.+|++
T Consensus       258 ~-~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~  302 (373)
T 2qol_A          258 D-VIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVS  302 (373)
T ss_dssp             H-HHHHHHTTEECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             H-HHHHHHcCCCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHH
Confidence            2 22222222223334456788999999999999999999999987

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.96  E-value=1.8e-30  Score=290.78  Aligned_cols=253  Identities=15%  Similarity=0.126  Sum_probs=176.1

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||+|...+.-.. ...++.|+..............++..++...+|||++.+++.......     
T Consensus        27 y~~~~~lg~G~~g~Vy~~~~~~~~~~-~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-----  100 (298)
T 3f66_A           27 VHFNEVIGRGHFGCVYHGTLLDNDGK-KIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG-----  100 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEC------CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS-----
T ss_pred             hhhcceeeecCCceEEEEEEecCCCc-eeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCC-----
Confidence            4443433  47899999975321100 112333333222222333445567778888899999987765321111     


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                         ..       ..+|||++|++|.++++.....++..+++.++.||+.||.|||++||+||||||+||+++.++.+|++
T Consensus       101 ---~~-------~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~  170 (298)
T 3f66_A          101 ---SP-------LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVA  170 (298)
T ss_dssp             ---CC-------EEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEEC
T ss_pred             ---ce-------EEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEEC
Confidence               11       13899999999999998777778888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++........                                                                  
T Consensus       171 Dfg~a~~~~~~~~~------------------------------------------------------------------  184 (298)
T 3f66_A          171 DFGLARDMYDKEYY------------------------------------------------------------------  184 (298)
T ss_dssp             SCGGGCCCSCGGGC------------------------------------------------------------------
T ss_pred             cccccccccccchh------------------------------------------------------------------
Confidence            99998765421100                                                                  


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                       .........||+.|+|||.+.+..++.++|||||||++|||+++   
T Consensus       185 ---------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~  231 (298)
T 3f66_A          185 ---------------------------------SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAP  231 (298)
T ss_dssp             ---------------------------------BC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ---------------------------------ccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCC
Confidence                                             00011144678899999999999999999999999999999983   


Q ss_pred             -CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 -FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       |.............. ...+......++.+.+|+.+||++||.+|||+.++++.
T Consensus       232 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  285 (298)
T 3f66_A          232 PYPDVNTFDITVYLLQ-GRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  285 (298)
T ss_dssp             SSTTSCTTTHHHHHHT-TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCccCCHHHHHHHHhc-CCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence             322222111111111 12222223457889999999999999999999999984

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.96  E-value=1.3e-30  Score=293.86  Aligned_cols=252  Identities=16%  Similarity=0.131  Sum_probs=181.8

Q ss_pred             hHHHhhhc--cccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.+  +|.|.||++.....- ...+..++.|+..............++..++...+|||++.++.....+...+ 
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~-  102 (314)
T 2ivs_A           24 NLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLL-  102 (314)
T ss_dssp             GEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE-
T ss_pred             heeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceE-
Confidence            34444444  478999999642100 11134556666543333333344566777788889999998877654333222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCC-----------------------CCCHHHHHHHHHHHHHHHHHhh
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH-----------------------KGKRIECLYIFRQIVALVDYHH  346 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~-----------------------~~~~~~~~~i~~qil~~l~~lH  346 (1092)
                                     .+|||++|++|.+++.....                       .++..+++.++.||+.||.|||
T Consensus       103 ---------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH  167 (314)
T 2ivs_A          103 ---------------LIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA  167 (314)
T ss_dssp             ---------------EEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------EEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH
Confidence                           38999999999999976532                       3778899999999999999999


Q ss_pred             hcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccc
Q 001366          347 TQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRW  426 (1092)
Q Consensus       347 s~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (1092)
                      ++||+||||||+||+++.++.+||+|||+++.......                                          
T Consensus       168 ~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~------------------------------------------  205 (314)
T 2ivs_A          168 EMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDS------------------------------------------  205 (314)
T ss_dssp             HTTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSC------------------------------------------
T ss_pred             HCCCcccccchheEEEcCCCCEEEcccccccccccccc------------------------------------------
Confidence            99999999999999999999999999999876441100                                          


Q ss_pred             cccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC
Q 001366          427 WSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG  506 (1092)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~  506 (1092)
                                                                                 ........+|+.|+|||.+.+
T Consensus       206 -----------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~  226 (314)
T 2ivs_A          206 -----------------------------------------------------------YVKRSQGRIPVKWMAIESLFD  226 (314)
T ss_dssp             -----------------------------------------------------------EECSSCCCSCGGGCCHHHHHH
T ss_pred             -----------------------------------------------------------ceeccCCCCcccccChhhhcC
Confidence                                                                       000013456788999999999


Q ss_pred             CCCCccccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          507 GVCTTSSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       507 ~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ..++.++|||||||++|||++ +   |..... ......+.....++.....++.+.+|+.+||++||.+||++.+++++
T Consensus       227 ~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~  305 (314)
T 2ivs_A          227 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP-ERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKD  305 (314)
T ss_dssp             CEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG-GGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH-HHHHHHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            899999999999999999998 5   332211 11222233333334444567889999999999999999999999986

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.96  E-value=1.4e-30  Score=293.38  Aligned_cols=253  Identities=13%  Similarity=0.098  Sum_probs=180.5

Q ss_pred             hHHHhhhc--cccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.+  +|.|.||++..... -...+..++.|+..............++...+... +|||++.++.........+
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~  103 (313)
T 1t46_A           24 RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTL  103 (313)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             hhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcE
Confidence            34444444  47899999963110 01124556666654333323334445566666666 8999998877654333222


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCC-----------------CCCHHHHHHHHHHHHHHHHHhhhcCcc
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH-----------------KGKRIECLYIFRQIVALVDYHHTQGVT  351 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~-----------------~~~~~~~~~i~~qil~~l~~lHs~gIv  351 (1092)
                                      ++|||++|++|.+++.....                 .++..+++.++.||+.||.|||++||+
T Consensus       104 ----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~  167 (313)
T 1t46_A          104 ----------------VITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCI  167 (313)
T ss_dssp             ----------------EEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ----------------EEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence                            38999999999999976543                 378889999999999999999999999


Q ss_pred             ccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccccc
Q 001366          352 FLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFP  431 (1092)
Q Consensus       352 HrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (1092)
                      ||||||+||+++.++.+|++|||+++.......                                               
T Consensus       168 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-----------------------------------------------  200 (313)
T 1t46_A          168 HRDLAARNILLTHGRITKICDFGLARDIKNDSN-----------------------------------------------  200 (313)
T ss_dssp             CSCCSGGGEEEETTTEEEECCCGGGSCTTSCTT-----------------------------------------------
T ss_pred             cCCCccceEEEcCCCCEEEcccccccccccccc-----------------------------------------------
Confidence            999999999999999999999999876441100                                               


Q ss_pred             CccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCc
Q 001366          432 SKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTT  511 (1092)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~  511 (1092)
                                                                            ........||+.|+|||.+.+..++.
T Consensus       201 ------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~  226 (313)
T 1t46_A          201 ------------------------------------------------------YVVKGNARLPVKWMAPESIFNCVYTF  226 (313)
T ss_dssp             ------------------------------------------------------SEECSSSEECGGGCCHHHHHHCCCCH
T ss_pred             ------------------------------------------------------ceeccCCCCcceeeChHHhcCCCCCh
Confidence                                                                  00011345788899999999999999


Q ss_pred             cccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          512 SSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       512 ~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ++|||||||+||||++ +   |............+.....++.....++.+.+|+.+||++||.+|||+.+++++
T Consensus       227 ~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  301 (313)
T 1t46_A          227 ESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQL  301 (313)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHH
Confidence            9999999999999997 4   333221122222222222233334457889999999999999999999999985

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.96  E-value=3.9e-31  Score=293.06  Aligned_cols=258  Identities=16%  Similarity=0.148  Sum_probs=185.9

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      ...|.+.+.++  |.|.||++....    .+..++.|++..... ........++...+...+|||++.+++....... 
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~-   79 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKS----DGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTN-   79 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETT----TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGG-
T ss_pred             hhheeeehhccCCCCcEEEEEEECC----CCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCC-
Confidence            34555555544  789999997632    245555555533222 2233445566677888899999987764432111 


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHhhhcC-----ccccCCCCCC
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNAR---GHKGKRIECLYIFRQIVALVDYHHTQG-----VTFLDLKPSS  359 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~---~~~~~~~~~~~i~~qil~~l~~lHs~g-----IvHrDLKP~N  359 (1092)
                            ...       .++|||++|++|.+++...   ...++..+++.++.||+.||.|||++|     |+||||||+|
T Consensus        80 ------~~~-------~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~N  146 (279)
T 2w5a_A           80 ------TTL-------YIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPAN  146 (279)
T ss_dssp             ------TEE-------EEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGG
T ss_pred             ------ceE-------EEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhh
Confidence                  001       1389999999999999653   345888899999999999999999999     9999999999


Q ss_pred             eEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccc
Q 001366          360 FKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIE  439 (1092)
Q Consensus       360 ill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1092)
                      |+++.++.+||+|||+++......                                                        
T Consensus       147 Il~~~~~~~kl~dfg~~~~~~~~~--------------------------------------------------------  170 (279)
T 2w5a_A          147 VFLDGKQNVKLGDFGLARILNHDT--------------------------------------------------------  170 (279)
T ss_dssp             EEECSSSCEEECCCCHHHHC---C--------------------------------------------------------
T ss_pred             EEEcCCCCEEEecCchheeecccc--------------------------------------------------------
Confidence            999999999999999987643100                                                        


Q ss_pred             ccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhh
Q 001366          440 TANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLG  519 (1092)
Q Consensus       440 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLG  519 (1092)
                                                                     .......||+.|+|||++.+..++.++||||||
T Consensus       171 -----------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  203 (279)
T 2w5a_A          171 -----------------------------------------------SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLG  203 (279)
T ss_dssp             -----------------------------------------------HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHH
T ss_pred             -----------------------------------------------ccccccCCCccccChHHhccCCCCchhhHHHHH
Confidence                                                           001134689999999999999999999999999


Q ss_pred             HHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          520 VLFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       520 vll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      |++|||+++   |...... .....+.....++.....++.+.+|+.+||+.||.+||++.|||+|+|+.+...
T Consensus       204 ~il~~l~~g~~p~~~~~~~-~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~~  276 (279)
T 2w5a_A          204 CLLYELCALMPPFTAFSQK-ELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLILEHHH  276 (279)
T ss_dssp             HHHHHHHHSSCSSCCSSHH-HHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGGS
T ss_pred             HHHHHHHHCCCCCcccCHH-HHHHHHhhcccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhhcc
Confidence            999999985   4433222 222233333333333456788999999999999999999999999999987643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=1.6e-28  Score=286.38  Aligned_cols=278  Identities=14%  Similarity=0.154  Sum_probs=223.4

Q ss_pred             eEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCC
Q 001366          750 AFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDR-DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNR  828 (1092)
Q Consensus       750 ~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fsp-dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~  828 (1092)
                      ++.||.+.+|++.+..... .....+.+|...|++++|+| ++++||+|+.|++|+||++.................+|.
T Consensus        53 ~~~~g~i~v~~~~~~~~~~-~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~  131 (402)
T 2aq5_A           53 ASGGGAFLVLPLGKTGRVD-KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT  131 (402)
T ss_dssp             CSSSCCEEEEETTCCEECC-TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS
T ss_pred             EcCCCEEEEEECccCCCCC-CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC
Confidence            4678999999986532211 01224678999999999999 999999999999999999876321111112334556799


Q ss_pred             CCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEe--eccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce
Q 001366          829 SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHY--IEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS  906 (1092)
Q Consensus       829 ~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l--~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~  906 (1092)
                      ..|.+++|+|++..+|++++.||+|+|||+.+++.+..+  .+|...|.+++|+| ++..|++++.|+.|++||+++++.
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCce
Confidence            999999999984479999999999999999999999999  78999999999999 889999999999999999999999


Q ss_pred             eeeE-e-cCC-ceEEEEEccCCCeEEEEE---ECCCeEEEEEcCCCCcceEEe-cCCCCCeEEEEEc-CCCEEE-EEECC
Q 001366          907 LATI-K-NIA-NVCCVQFSAHSSHLLAFG---SADYRTYCYDLRNARAPWCVL-AGHEKAVSYVKFL-DSGTLV-TASTD  977 (1092)
Q Consensus       907 l~~l-~-~~~-~V~sl~fsp~~~~~latg---s~Dg~I~vwDlr~~~~~~~~l-~~H~~~V~~v~fs-~~~~L~-Sgs~D  977 (1092)
                      +..+ . +.. .+.++.|+|++ .+|++|   +.|+.|++||+++...++... ..|...|.+++|+ ++.+|+ +|+.|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d  289 (402)
T 2aq5_A          211 VAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD  289 (402)
T ss_dssp             EEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred             eeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence            9888 3 433 38999999998 588888   789999999999877644444 3678889999998 566775 55579


Q ss_pred             CeEEEEEcCCCCCCCCCCCceeEEEcC--CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCC
Q 001366          978 NKLKLWDLKRTSHTGPSTNACSLTFSG--HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPM 1039 (1092)
Q Consensus       978 g~I~vWDl~~~~~~~~~~~~~~~~l~~--h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~ 1039 (1092)
                      +.|++||+.+..       .++..+..  |...|.+++|+|++.++++  .++.+++|++..+.
T Consensus       290 g~i~i~d~~~~~-------~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          290 SSIRYFEITSEA-------PFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             SCEEEEEECSST-------TCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             CeEEEEEecCCC-------cceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            999999998432       11333333  5689999999999988775  56699999987754

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.96  E-value=1.6e-30  Score=286.61  Aligned_cols=237  Identities=14%  Similarity=0.070  Sum_probs=176.8

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|.||++...+     +..++.|++.....  ......++...+...+|||++.++.....+...+            
T Consensus        19 G~~g~V~~~~~~~-----~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~------------   79 (268)
T 3sxs_A           19 GQFGVVKLGKWKG-----QYDVAVKMIKEGSM--SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIY------------   79 (268)
T ss_dssp             ETTEEEEEEEETT-----TEEEEEEEECBTTB--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEE------------
T ss_pred             CCCceEEEEEecC-----ceeEEEEEeccCCC--cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceE------------
Confidence            4789999997643     33456655533222  2233456667778889999998776644322222            


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                          .+|||++|++|.+++...+..++..+++.++.||+.||.|||++||+||||||+||+++.++.+|++|||+++...
T Consensus        80 ----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~  155 (268)
T 3sxs_A           80 ----IVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVL  155 (268)
T ss_dssp             ----EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECC
T ss_pred             ----EEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecc
Confidence                3899999999999998876678888999999999999999999999999999999999999999999999987644


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      ....                                                                            
T Consensus       156 ~~~~----------------------------------------------------------------------------  159 (268)
T 3sxs_A          156 DDQY----------------------------------------------------------------------------  159 (268)
T ss_dssp             TTCE----------------------------------------------------------------------------
T ss_pred             hhhh----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHHH
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERALA  536 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~~  536 (1092)
                                                .......+|+.|+|||.+.+..++.++|||||||++|||++ +   |.......
T Consensus       160 --------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~  213 (268)
T 3sxs_A          160 --------------------------VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSE  213 (268)
T ss_dssp             --------------------------EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHH
T ss_pred             --------------------------hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHH
Confidence                                      00013346778999999998899999999999999999998 4   43333332


Q ss_pred             HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          537 AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       537 ~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      ....... ...+......++.+.+|+.+||++||.+|||+.+++++-
T Consensus       214 ~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L  259 (268)
T 3sxs_A          214 VVLKVSQ-GHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSI  259 (268)
T ss_dssp             HHHHHHT-TCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHc-CCCCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            2222222 222222233578899999999999999999999999863

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.96  E-value=2.4e-30  Score=287.56  Aligned_cols=245  Identities=15%  Similarity=0.113  Sum_probs=179.8

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.+.+.++  |.|+||++...+     +..++.|++.....  ......++...+...+|||++.++.....+...+  
T Consensus        25 ~y~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~--   95 (283)
T 3gen_A           25 DLTFLKELGTGQFGVVKYGKWRG-----QYDVAIKMIKEGSM--SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIF--   95 (283)
T ss_dssp             GEEEEEECC---CEEEEEEEETT-----TEEEEEEEECTTSB--CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE--
T ss_pred             HHHhHhhcCCCCCceEEEEEEcC-----CCeEEEEEecCCCC--CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeE--
Confidence            344444444  789999997643     33455555533222  2233456667788889999998776644322222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    .+|||++|++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+||
T Consensus        96 --------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl  161 (283)
T 3gen_A           96 --------------IITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKV  161 (283)
T ss_dssp             --------------EEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEE
T ss_pred             --------------EEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEE
Confidence                          389999999999999875567888899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.......                                                                  
T Consensus       162 ~Dfg~~~~~~~~~~------------------------------------------------------------------  175 (283)
T 3gen_A          162 SDFGLSRYVLDDEY------------------------------------------------------------------  175 (283)
T ss_dssp             CSTTGGGGBCCHHH------------------------------------------------------------------
T ss_pred             cccccccccccccc------------------------------------------------------------------
Confidence            99999876441000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......+|+.|+|||.+.+..++.++|||||||++|||++ + 
T Consensus       176 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~  219 (283)
T 3gen_A          176 ------------------------------------TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGK  219 (283)
T ss_dssp             ------------------------------------HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTC
T ss_pred             ------------------------------------ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence                                                00013346788999999998899999999999999999997 4 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                        |........ ...+.....+......++.+.+|+.+||+.+|.+|||+.+++++-
T Consensus       220 ~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L  275 (283)
T 3gen_A          220 MPYERFTNSET-AEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNI  275 (283)
T ss_dssp             CTTTTSCHHHH-HHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             CCccccChhHH-HHHHhcccCCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHH
Confidence              433222222 222222222223334478899999999999999999999999874

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.96  E-value=1.8e-30  Score=289.91  Aligned_cols=238  Identities=17%  Similarity=0.146  Sum_probs=166.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|.||+|...+       .++.|++..... ........++..++...+|||++.++.....+ ..           
T Consensus        34 ~G~~g~Vy~~~~~~-------~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~-----------   94 (289)
T 3og7_A           34 SGSFGTVYKGKWHG-------DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP-QL-----------   94 (289)
T ss_dssp             ECSSEEEEEEESSS-------EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-SC-----------
T ss_pred             CCCCeEEEEEEEcC-------ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCC-cc-----------
Confidence            35789999998733       345555432222 22334455677788889999999766532111 11           


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           ..+|+|++|++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++.
T Consensus        95 -----~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~  169 (289)
T 3og7_A           95 -----AIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATE  169 (289)
T ss_dssp             -----EEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC----
T ss_pred             -----EEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceeccc
Confidence                 138999999999999987777788889999999999999999999999999999999999999999999999875


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       170 ~~~~~---------------------------------------------------------------------------  174 (289)
T 3og7_A          170 KSRWS---------------------------------------------------------------------------  174 (289)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            43100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc---CCCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS---GGVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~---~~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                .........||+.|+|||.+.   +..++.++|||||||++|||+++   |...
T Consensus       175 --------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  228 (289)
T 3og7_A          175 --------------------------GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNI  228 (289)
T ss_dssp             -----------------------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             --------------------------ccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCcccc
Confidence                                      000112456899999999997   56789999999999999999985   4332


Q ss_pred             HHHHHHHHhccccCCCC----CCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          533 RALAAAMSDLRDRILPP----SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~----~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .........+.....++    .....++.+.+|+.+||+++|.+|||+.++++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  282 (289)
T 3og7_A          229 NNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAE  282 (289)
T ss_dssp             CCHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             chHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHH
Confidence            22333333333222222    223556889999999999999999999999874

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.96  E-value=1.9e-30  Score=287.06  Aligned_cols=248  Identities=20%  Similarity=0.224  Sum_probs=174.4

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.+  ++.|.||++...    ..+..++.|++.....  ........++...+...+|||++.++.........+ 
T Consensus        13 y~i~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~-   87 (276)
T 2h6d_A           13 YVLGDTLGVGTFGKVKIGEHQ----LTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFF-   87 (276)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE-
T ss_pred             EEEEeeecCCCCeEEEEEEEC----CCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEE-
Confidence            4444444  368999999753    1245566665532211  111223345566677889999998877654333222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     .+|||++|++|.+++...+ .++..+++.++.||+.||.|||++||+||||||+||+++.++.+|
T Consensus        88 ---------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~  151 (276)
T 2h6d_A           88 ---------------MVMEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAK  151 (276)
T ss_dssp             ---------------EEEECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEE
T ss_pred             ---------------EEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEE
Confidence                           3899999999999997764 477779999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++......                                                                  
T Consensus       152 l~dfg~~~~~~~~~------------------------------------------------------------------  165 (276)
T 2h6d_A          152 IADFGLSNMMSDGE------------------------------------------------------------------  165 (276)
T ss_dssp             ECCCCGGGCCCC--------------------------------------------------------------------
T ss_pred             EeecccccccCCCc------------------------------------------------------------------
Confidence            99999886643100                                                                  


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHHHHHHcCC
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvll~ell~~  528 (1092)
                                                            ......||+.|+|||.+.+..+ +.++|||||||++|||+++
T Consensus       166 --------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g  207 (276)
T 2h6d_A          166 --------------------------------------FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCG  207 (276)
T ss_dssp             -------------------------------------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhC
Confidence                                                  0013468899999999988765 6899999999999999985


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                         |...... .....+..... +.....++.+.+|+.+||++||.+|||+.++++||||...
T Consensus       208 ~~p~~~~~~~-~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h~~~~~~  268 (276)
T 2h6d_A          208 TLPFDDEHVP-TLFKKIRGGVF-YIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQD  268 (276)
T ss_dssp             SCSSCCSSHH-HHHHHHHHCCC-CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             CCCCCCCcHH-HHHHHhhcCcc-cCchhcCHHHHHHHHHHccCChhhCCCHHHHHhChhhccC
Confidence               4433222 22222222211 1122347889999999999999999999999999999764

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.96  E-value=2.7e-30  Score=297.18  Aligned_cols=255  Identities=16%  Similarity=0.214  Sum_probs=180.9

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+...+  +|.|.||++...    ..+..++.|+...... ........++..++...+|||++.+++.........  
T Consensus        26 y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~--   99 (353)
T 3coi_A           26 YVSPTHVGSGAYGSVCSAIDK----RSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLR--   99 (353)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGG--
T ss_pred             EEEeeeEecCCCeEEEEEEEC----CCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccc--
Confidence            4444444  478999999752    2255666666533222 222344556777788889999998776644322211  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                         ..     .....+|+|+. ++|.+++..   .++..+++.++.||+.||+|||++||+||||||+||+++.++.+||
T Consensus       100 ---~~-----~~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl  167 (353)
T 3coi_A          100 ---NF-----YDFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKI  167 (353)
T ss_dssp             ---GC-----CCCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEE
T ss_pred             ---cc-----eeEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEE
Confidence               00     11124789998 599888753   4788899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++....                                                                     
T Consensus       168 ~Dfg~~~~~~~---------------------------------------------------------------------  178 (353)
T 3coi_A          168 LDFGLARHADA---------------------------------------------------------------------  178 (353)
T ss_dssp             CSTTCTTC------------------------------------------------------------------------
T ss_pred             eecccccCCCC---------------------------------------------------------------------
Confidence            99998865320                                                                     


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ..+..+||++|+|||++.+ ..++.++|||||||+||||+++ 
T Consensus       179 -------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~  221 (353)
T 3coi_A          179 -------------------------------------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK  221 (353)
T ss_dssp             ------------------------------------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCC
Confidence                                                 0013468999999999987 6789999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhcc-----------------------------ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          529 --FDSERALAAAMSDLR-----------------------------DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~-----------------------------~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                        |.+............                             ...++..+...++.+.+|+.+||++||.+|||+.
T Consensus       222 ~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~  301 (353)
T 3coi_A          222 TLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAA  301 (353)
T ss_dssp             CSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHH
Confidence              443322221111111                             0111223345678899999999999999999999


Q ss_pred             HHhhhhhhhhhhccc
Q 001366          578 EILQSEVTNEFQEVC  592 (1092)
Q Consensus       578 eiL~~~~~~~~~~~~  592 (1092)
                      ++|+||||.......
T Consensus       302 e~l~hp~f~~~~~~~  316 (353)
T 3coi_A          302 QALTHPFFEPFRDPE  316 (353)
T ss_dssp             HHHTSGGGTTTCCGG
T ss_pred             HHhcCcchhhccCcc
Confidence            999999998765543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.96  E-value=1.6e-30  Score=288.92  Aligned_cols=249  Identities=14%  Similarity=0.052  Sum_probs=176.8

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.+  +|.|.||+|...+.- ..+..++.|+..............++...+...+|||++.++.....+. .   
T Consensus        13 ~y~~~~~lg~G~~g~Vy~~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~---   87 (281)
T 3cc6_A           13 DVVLNRILGEGFFGEVYEGVYTNHK-GEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEP-T---   87 (281)
T ss_dssp             GEEEEEEEEECSSSEEEEEEEECTT-CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSS-C---
T ss_pred             ceEEEEEEEecCCeeEEEeEEcCCC-CCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCC-C---
Confidence            34444444  478999998742211 1123355555433322333344455666777779999998766532111 1   


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                   ..+|+|++|++|.+++...+..++...++.++.||+.||+|||++||+||||||+||+++.++.+|+
T Consensus        88 -------------~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl  154 (281)
T 3cc6_A           88 -------------WIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKL  154 (281)
T ss_dssp             -------------EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEE
T ss_pred             -------------EEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEe
Confidence                         1389999999999999887777888899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.......                                                                  
T Consensus       155 ~Dfg~~~~~~~~~~------------------------------------------------------------------  168 (281)
T 3cc6_A          155 GDFGLSRYIEDEDY------------------------------------------------------------------  168 (281)
T ss_dssp             CCCCGGGCC-----------------------------------------------------------------------
T ss_pred             CccCCCcccccccc------------------------------------------------------------------
Confidence            99999876441000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......+|+.|+|||++.+..++.++|||||||++|||++ + 
T Consensus       169 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~  212 (281)
T 3cc6_A          169 ------------------------------------YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGK  212 (281)
T ss_dssp             ----------------------------------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             ------------------------------------cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCC
Confidence                                                00013346788999999998899999999999999999997 5 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                        |...... .....+.....++.....++.+.+|+.+||++||.+||++.|++++
T Consensus       213 ~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  267 (281)
T 3cc6_A          213 QPFFWLENK-DVIGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCS  267 (281)
T ss_dssp             CTTTTSCGG-GHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCcccCChH-HHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHH
Confidence              3211111 1111222222233334457889999999999999999999999985

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.96  E-value=2.6e-30  Score=289.38  Aligned_cols=251  Identities=14%  Similarity=0.094  Sum_probs=183.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc--------hhhHhhhhhhhhhccC-CCCCCCccccce
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--------SDAALKAAGAMMVASN-ASPKPVGVGTAV  281 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  281 (1092)
                      .|.+.+.++  +.|.||++....    .+..++.|++......        .......++..++... .|||++.+++..
T Consensus        18 ~y~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   93 (298)
T 1phk_A           18 NYEPKEILGRGVSSVVRRCIHKP----TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY   93 (298)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETT----TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             ccceeeeecCCCceEEEEEEEcC----cCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence            466555554  679999997632    3455666665332211        1122234555556666 499999887765


Q ss_pred             ecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeE
Q 001366          282 VSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFK  361 (1092)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nil  361 (1092)
                      ..+...+                ++|||++|++|.+++.... .++..+++.++.||+.||+|||++||+||||||+||+
T Consensus        94 ~~~~~~~----------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil  156 (298)
T 1phk_A           94 ETNTFFF----------------LVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICALHKLNIVHRDLKPENIL  156 (298)
T ss_dssp             ECSSEEE----------------EEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             ccCCeEE----------------EEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEE
Confidence            4333222                3899999999999997654 5778899999999999999999999999999999999


Q ss_pred             EccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          362 LLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       362 l~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      ++.++.+||+|||+++.....                                                           
T Consensus       157 ~~~~~~~kl~dfg~~~~~~~~-----------------------------------------------------------  177 (298)
T 1phk_A          157 LDDDMNIKLTDFGFSCQLDPG-----------------------------------------------------------  177 (298)
T ss_dssp             ECTTCCEEECCCTTCEECCTT-----------------------------------------------------------
T ss_pred             EcCCCcEEEecccchhhcCCC-----------------------------------------------------------
Confidence            999999999999988664310                                                           


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc------CCCCCccccc
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS------GGVCTTSSNI  515 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~------~~~~t~~sDI  515 (1092)
                                                                   .......||+.|+|||++.      ...++.++||
T Consensus       178 ---------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di  212 (298)
T 1phk_A          178 ---------------------------------------------EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDM  212 (298)
T ss_dssp             ---------------------------------------------CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHH
T ss_pred             ---------------------------------------------cccccccCCccccCHHHhccccccccccCCccccc
Confidence                                                         0011356889999999985      4568999999


Q ss_pred             hhhhHHHHHHcCC---CCcHHHHHHHHHhc--cccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          516 YSLGVLFFELFGR---FDSERALAAAMSDL--RDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       516 wSLGvll~ell~~---f~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |||||+||||+++   |.............  .....++.+...++.+.+|+.+||+.||.+|||+.++|+||||.+.
T Consensus       213 ~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  290 (298)
T 1phk_A          213 WSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQY  290 (298)
T ss_dssp             HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTT
T ss_pred             HhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHhChHhhhc
Confidence            9999999999986   43332222222111  1222233444567889999999999999999999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=6e-29  Score=292.36  Aligned_cols=257  Identities=16%  Similarity=0.270  Sum_probs=199.4

Q ss_pred             ecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc-----------eEEEeeccC------------ccEEEEEEec
Q 001366          825 MSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ-----------TVSHYIEHE------------KRAWSVDFSQ  881 (1092)
Q Consensus       825 ~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~-----------~i~~l~~h~------------~~V~sv~fsp  881 (1092)
                      ..+...|++++|+|+ +++||+|+.||.|+|||+.+++           ....+.+|.            ..|++++|+|
T Consensus        25 ~~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           25 VAEADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CCGGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            346789999999998 9999999999999999998876           578899998            8899999999


Q ss_pred             CCC--CEEEEEeCCCcEEEEecCCCcee---------------------------------------eeE--ecCCceEE
Q 001366          882 VHP--TKLASGSDDCSVKLWNINEKNSL---------------------------------------ATI--KNIANVCC  918 (1092)
Q Consensus       882 ~~~--~~laSgs~Dg~I~iWDl~~~~~l---------------------------------------~~l--~~~~~V~s  918 (1092)
                       ++  ..|++++.|++|++||+.++...                                       ..+  .|...|.+
T Consensus       104 -~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          104 -QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             -CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             -CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence             65  78999999999999999864431                                       122  26778999


Q ss_pred             EEEccCCCeEEEEEECCCeEEEEEcCCCCcceE-------EecCCCCCeEEEEEcC-C-CEEEEEECCCeEEEEEcCCCC
Q 001366          919 VQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC-------VLAGHEKAVSYVKFLD-S-GTLVTASTDNKLKLWDLKRTS  989 (1092)
Q Consensus       919 l~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~-------~l~~H~~~V~~v~fs~-~-~~L~Sgs~Dg~I~vWDl~~~~  989 (1092)
                      ++|+|++. +|++| .|+.|++||+++....+.       .+.+|...|.+++|++ + .+|++|+.||+|++||+++..
T Consensus       183 ~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          183 ISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             EEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            99999985 88888 899999999985443333       2568999999999994 4 689999999999999998543


Q ss_pred             CCCCCCCceeEEEcCCCC------------CeEEEEEecCCCEEEEEecCCcEEEEeCCC-CCceeeeeccccCCCCCcc
Q 001366          990 HTGPSTNACSLTFSGHTN------------EKNFVGLSTADGYIACGSESNEVYAYHRSL-PMPITSYKFGSIDPISGKE 1056 (1092)
Q Consensus       990 ~~~~~~~~~~~~l~~h~~------------~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~-~~~i~~~~~~~~~~i~~~~ 1056 (1092)
                      .    ....+..+.+|..            .|++++|+|+|.+|++++. +.|+|||+.. ++++..+... ........
T Consensus       261 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~l~  334 (447)
T 3dw8_B          261 L----CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH-EYLRSKLC  334 (447)
T ss_dssp             S----SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC-GGGTTTHH
T ss_pred             c----ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc-cccccccc
Confidence            1    1112567777776            8999999999999999999 9999999986 6666655421 00000000


Q ss_pred             --ccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1057 --TDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1057 --~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                        .....-..+..++|+|++.+|++|+.||.|+||++
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred             ccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence              00000011345999999999999999999999996

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.6e-30  Score=301.65  Aligned_cols=248  Identities=15%  Similarity=0.109  Sum_probs=168.7

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|.||+|...+.- .....++.|+..............++..++...+|||++.++.......        +..  
T Consensus        98 G~G~fg~Vy~~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--------~~~--  166 (373)
T 3c1x_A           98 GRGHFGCVYHGTLLDND-GKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE--------GSP--  166 (373)
T ss_dssp             ECCSSSEEEEEEEEETT-TEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCS--------SCC--
T ss_pred             eeCCCeEEEEEEEECCC-CcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCC--------CCe--
Confidence            34578999999752210 0012234444333223334445566777888889999998776533211        111  


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .++|||++|++|.++|+..+..++..+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.
T Consensus       167 -----~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~  241 (373)
T 3c1x_A          167 -----LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD  241 (373)
T ss_dssp             -----EEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred             -----EEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccc
Confidence                 138999999999999988777788889999999999999999999999999999999999999999999999986


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +......                                                                         
T Consensus       242 ~~~~~~~-------------------------------------------------------------------------  248 (373)
T 3c1x_A          242 MYDKEFD-------------------------------------------------------------------------  248 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            5411000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~  534 (1092)
                                                .....+...+|+.|+|||.+.+..++.++|||||||+||||++ +   |.....
T Consensus       249 --------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~  302 (373)
T 3c1x_A          249 --------------------------SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT  302 (373)
T ss_dssp             -----------------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCS
T ss_pred             --------------------------cccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCH
Confidence                                      0000113457888999999999999999999999999999998 3   322211


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .... ..+.....++.....++.+.+|+.+||++||.+|||+.+++++
T Consensus       303 ~~~~-~~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~  349 (373)
T 3c1x_A          303 FDIT-VYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  349 (373)
T ss_dssp             SCHH-HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHH-HHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            1111 1111122222233457889999999999999999999999986

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.96  E-value=2e-30  Score=294.14  Aligned_cols=255  Identities=12%  Similarity=0.042  Sum_probs=167.9

Q ss_pred             cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|.||++.....-.. ...++.|++.... .........++...+...+|||++.++..........   ....++  
T Consensus        34 G~~g~Vy~~~~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~---~~~~~~--  107 (323)
T 3qup_A           34 GEFGSVREAQLKQEDGS-FVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKG---RLPIPM--  107 (323)
T ss_dssp             ETTEEEEEEEC--------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC----------CEE--
T ss_pred             cCCeEEEEEEEcccCCc-ceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccccc---CCCccE--
Confidence            47899999986331100 1145555553322 2233445567777888889999998877655333221   011111  


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcC-----CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARG-----HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~-----~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                           .+|+|++|++|.+++....     ..++..+++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||
T Consensus       108 -----~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~Dfg  182 (323)
T 3qup_A          108 -----VILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFG  182 (323)
T ss_dssp             -----EEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCC
T ss_pred             -----EEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEeecc
Confidence                 3799999999999995432     247888999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++........                                                                     
T Consensus       183 ~a~~~~~~~~~---------------------------------------------------------------------  193 (323)
T 3qup_A          183 LSRKIYSGDYY---------------------------------------------------------------------  193 (323)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            98764411000                                                                     


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CC
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FD  530 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~  530 (1092)
                                                      .......+|+.|+|||.+.+..++.++|||||||++|||++ +   |.
T Consensus       194 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~  241 (323)
T 3qup_A          194 --------------------------------RQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYA  241 (323)
T ss_dssp             ---------------------------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             --------------------------------cccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCcc
Confidence                                            00013346778999999999999999999999999999998 5   33


Q ss_pred             cHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-------HHHHhhhhhhhhh
Q 001366          531 SERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-------TREILQSEVTNEF  588 (1092)
Q Consensus       531 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-------a~eiL~~~~~~~~  588 (1092)
                      ...... ....+.....++.....++.+.+|+.+||++||.+|||       .++++.|+|+...
T Consensus       242 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~  305 (323)
T 3qup_A          242 GIENAE-IYNYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLST  305 (323)
T ss_dssp             TCCGGG-HHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC------
T ss_pred             ccChHH-HHHHHhcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCC
Confidence            322211 22222222233344456788999999999999999999       6777888888654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.96  E-value=1.5e-30  Score=291.11  Aligned_cols=254  Identities=16%  Similarity=0.069  Sum_probs=178.5

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||++.....-...+..++.|+.... .........++..++...+|||++.++.........    
T Consensus        12 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~----   86 (295)
T 3ugc_A           12 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR----   86 (295)
T ss_dssp             EEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHT----
T ss_pred             hhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC----
Confidence            4444444  478999999732111223556666655322 122223445677778888999999876553221110    


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                         .       ...+|||++|++|.+++......++..+++.++.||+.||+|||++||+||||||+|||++.++.+||+
T Consensus        87 ---~-------~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~  156 (295)
T 3ugc_A           87 ---N-------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIG  156 (295)
T ss_dssp             ---S-------CEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEEC
T ss_pred             ---c-------eEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEc
Confidence               0       113899999999999998776668888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++........                                                                  
T Consensus       157 Dfg~~~~~~~~~~~------------------------------------------------------------------  170 (295)
T 3ugc_A          157 DFGLTKVLPQDKEF------------------------------------------------------------------  170 (295)
T ss_dssp             CCCSCC--------------------------------------------------------------------------
T ss_pred             cCcccccccCCcce------------------------------------------------------------------
Confidence            99998765411000                                                                  


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCC--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRF--  529 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f--  529 (1092)
                                                        ........+|..|+|||.+.+..++.++|||||||++|||+++.  
T Consensus       171 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~  216 (295)
T 3ugc_A          171 ----------------------------------FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEK  216 (295)
T ss_dssp             ---------------------------------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             ----------------------------------eeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccc
Confidence                                              00001345678899999999999999999999999999999852  


Q ss_pred             -CcHHH---------------HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          530 -DSERA---------------LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       530 -~~~~~---------------~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       .....               .......+.....++.....++.+.+|+.+||+.||.+|||+.|+++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~  285 (295)
T 3ugc_A          217 SKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALR  285 (295)
T ss_dssp             TCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             cCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence             22111               112222233333344445667889999999999999999999999873

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.96  E-value=8.1e-31  Score=292.10  Aligned_cols=243  Identities=13%  Similarity=0.086  Sum_probs=174.5

Q ss_pred             hHHHhhhc--cccceeeeCCCCCcc---ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAF---KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      .|.+.+.+  ++.|.||++.....-   ......++.|+.... .........++..++...+|||++.++.....+...
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (289)
T 4fvq_A            9 DLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA-HRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN   87 (289)
T ss_dssp             GEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG-GGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred             HeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc-cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence            34444444  478999999763200   000123445544221 122233445666778888999999877765433222


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      +                .+|||++|++|.+++...+..++..+++.++.||+.||.|||++||+||||||+|||++.++.
T Consensus        88 ~----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~  151 (289)
T 4fvq_A           88 I----------------LVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREED  151 (289)
T ss_dssp             E----------------EEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCB
T ss_pred             E----------------EEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCc
Confidence            2                389999999999999887666888899999999999999999999999999999999998887


Q ss_pred             --------EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccc
Q 001366          368 --------VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIE  439 (1092)
Q Consensus       368 --------vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1092)
                              +|++|||+++.....                                                         
T Consensus       152 ~~~~~~~~~kl~Dfg~~~~~~~~---------------------------------------------------------  174 (289)
T 4fvq_A          152 RKTGNPPFIKLSDPGISITVLPK---------------------------------------------------------  174 (289)
T ss_dssp             GGGTBCCEEEECCCCSCTTTSCH---------------------------------------------------------
T ss_pred             ccccccceeeeccCcccccccCc---------------------------------------------------------
Confidence                    999999987553210                                                         


Q ss_pred             ccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhh
Q 001366          440 TANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSL  518 (1092)
Q Consensus       440 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSL  518 (1092)
                                                                        ....||+.|+|||.+.+ ..++.++|||||
T Consensus       175 --------------------------------------------------~~~~~~~~y~aPE~~~~~~~~~~~~Diwsl  204 (289)
T 4fvq_A          175 --------------------------------------------------DILQERIPWVPPECIENPKNLNLATDKWSF  204 (289)
T ss_dssp             --------------------------------------------------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHH
T ss_pred             --------------------------------------------------cccCCcCcccCHHHhCCCCCCCchhHHHHH
Confidence                                                              02357888999999988 779999999999


Q ss_pred             hHHHHHHcCC----CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          519 GVLFFELFGR----FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       519 Gvll~ell~~----f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||++|||+++    |.................+|+   ..++.+.+|+.+||++||.+|||+.+++++
T Consensus       205 G~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  269 (289)
T 4fvq_A          205 GTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPA---PKAAELANLINNCMDYEPDHRPSFRAIIRD  269 (289)
T ss_dssp             HHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCC---CSSCTTHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCccccchHHHHHHhhccCCCCC---CCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            9999999984    222111111111111222222   236788999999999999999999999986

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.96  E-value=4.6e-30  Score=284.81  Aligned_cols=256  Identities=22%  Similarity=0.203  Sum_probs=183.2

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ++.|.||++....    .+..++.|+.....     ....++...+...+|||++.++..........  .
T Consensus        13 y~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~-----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~--~   81 (284)
T 2a19_B           13 FKEIELIGSGGFGQVFKAKHRI----DGKTYVIKRVKYNN-----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDP--E   81 (284)
T ss_dssp             EEEEEEEECSSSCCEEEEEETT----TCCEEEEEEEECCS-----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC----
T ss_pred             cceeeeeccCCceEEEEEEEcC----CCeEEEEEEecccc-----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCc--c
Confidence            4444444  3689999997631    24455555543221     22345566677889999998755432100000  0


Q ss_pred             cCCCCCcc--ccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          292 RTGVPASC--WIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       292 ~~~~~~~~--~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                      ........  ......+|||++|++|.+++... +..++..+++.++.||+.||.|||++||+||||||+||+++.++.+
T Consensus        82 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~  161 (284)
T 2a19_B           82 TSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQV  161 (284)
T ss_dssp             -------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEE
T ss_pred             cccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCE
Confidence            00000000  00022489999999999999653 3568888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++......                                                                 
T Consensus       162 kl~Dfg~~~~~~~~~-----------------------------------------------------------------  176 (284)
T 2a19_B          162 KIGDFGLVTSLKNDG-----------------------------------------------------------------  176 (284)
T ss_dssp             EECCCTTCEESSCCS-----------------------------------------------------------------
T ss_pred             EECcchhheeccccc-----------------------------------------------------------------
Confidence            999999887643100                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                             ......||+.|+|||.+.+..++.++|||||||+||||+++
T Consensus       177 ---------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~  217 (284)
T 2a19_B          177 ---------------------------------------KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHV  217 (284)
T ss_dssp             ---------------------------------------CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSC
T ss_pred             ---------------------------------------cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhc
Confidence                                                   00134689999999999999999999999999999999998


Q ss_pred             CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          529 FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ..+..........+....+++.   .++.+.+|+.+||++||.+|||+.|++++.+.-.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~  273 (284)
T 2a19_B          218 CDTAFETSKFFTDLRDGIISDI---FDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK  273 (284)
T ss_dssp             CSSHHHHHHHHHHHHTTCCCTT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHT
T ss_pred             CCcchhHHHHHHHhhccccccc---CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence            6655554555555555444433   4688999999999999999999999999986643

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.96  E-value=4.1e-30  Score=291.57  Aligned_cols=258  Identities=16%  Similarity=0.143  Sum_probs=177.8

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch----hhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS----DAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      +|.+.+.++  |.|.||++....   ..+..++.|++.......    .........+.+....|||++.+++.......
T Consensus        12 ~y~~~~~lg~G~~g~V~~~~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A           12 QYECVAEIGEGAYGKVFKARDLK---NGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETT---TTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             ceeeeeeecccccEEEEEEEecC---CCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            355544444  789999997520   113445555543222111    11122222333444589999987765431110


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                      ..    ...       ...+|||++ ++|.+++.... ..++..+++.++.||+.||.|||++||+||||||+||+++.+
T Consensus        89 ~~----~~~-------~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~  156 (326)
T 1blx_A           89 DR----ETK-------LTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSS  156 (326)
T ss_dssp             SS----EEE-------EEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTT
T ss_pred             CC----Cce-------EEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCC
Confidence            00    000       113799998 59999997653 347888999999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++.....                                                               
T Consensus       157 ~~~kl~Dfg~~~~~~~~---------------------------------------------------------------  173 (326)
T 1blx_A          157 GQIKLADFGLARIYSFQ---------------------------------------------------------------  173 (326)
T ss_dssp             CCEEECSCCSCCCCCGG---------------------------------------------------------------
T ss_pred             CCEEEecCcccccccCC---------------------------------------------------------------
Confidence            99999999988653310                                                               


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                                                               .......||+.|+|||++.+..++.++|||||||+||||
T Consensus       174 -----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  212 (326)
T 1blx_A          174 -----------------------------------------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEM  212 (326)
T ss_dssp             -----------------------------------------GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHH
Confidence                                                     001145689999999999999999999999999999999


Q ss_pred             cCC---CCcHHHHHHHHHhccccCC-------------------------CCCCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          526 FGR---FDSERALAAAMSDLRDRIL-------------------------PPSFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       526 l~~---f~~~~~~~~~~~~~~~~~~-------------------------p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                      +++   |.+..........+.....                         .......++.+.+|+.+||++||.+|||+.
T Consensus       213 ~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  292 (326)
T 1blx_A          213 FRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAY  292 (326)
T ss_dssp             HHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             HcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHH
Confidence            985   5443333322222111000                         011234567788999999999999999999


Q ss_pred             HHhhhhhhhhhh
Q 001366          578 EILQSEVTNEFQ  589 (1092)
Q Consensus       578 eiL~~~~~~~~~  589 (1092)
                      |+|+||||....
T Consensus       293 e~l~hp~~~~~~  304 (326)
T 1blx_A          293 SALSHPYFQDLE  304 (326)
T ss_dssp             HHHTSGGGTTCC
T ss_pred             HHhcCccccccc
Confidence            999999998754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.8e-28  Score=283.31  Aligned_cols=270  Identities=13%  Similarity=0.095  Sum_probs=205.0

Q ss_pred             CCeEEEEEcccceE-----EeeEEeeeecCCCCCEEEEEEcCCCCEEEEEe-----------CCCcEEEEEcCCCCCCC-
Q 001366          753 DGLCKYARYSKFEV-----QGMLRTGEFNNSANVICSISFDRDEDHFAAAG-----------VSKKIKIFEFNALFNDS-  815 (1092)
Q Consensus       753 D~~~k~w~~~~~~~-----~~~l~~~~l~~h~~~V~sl~fspdg~~latgg-----------~D~~I~Iwd~~~~~~~~-  815 (1092)
                      ++.+++|++.....     ........|..|...|.+++++  ++.+++|+           .|+++++|++....... 
T Consensus        42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~  119 (365)
T 4h5i_A           42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE  119 (365)
T ss_dssp             CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred             CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence            44699998753221     1112223577899999888765  55666654           57789999986522100 


Q ss_pred             -cccccceeeecCCCCeEEEEEecCCCCEEEE--EECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeC
Q 001366          816 -VDVYYPAVEMSNRSKLSCVCWNNYIKNYLAS--ADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD  892 (1092)
Q Consensus       816 -~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaS--gs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~  892 (1092)
                       ...........+...+.+++|+|+ +++|++  ++.|++|+|||+.+++++..+. |...|++|+|+| ++.++++++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~v~fSpD-g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~  196 (365)
T 4h5i_A          120 FLTSVDFDASTNADDYTKLVYISRE-GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITG  196 (365)
T ss_dssp             EEEEECSSCCCCTTCCEEEEEECTT-SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECS
T ss_pred             EeeeeceeecCCcccCEEEEEEcCC-CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccc
Confidence             000001111234566899999998 777654  4579999999999999988886 788899999999 8999999985


Q ss_pred             CCcEEEEecCCCceeeeEe---cCCceEEEEEccCCCeEEEEEECCC----eEEEEEcCCCCcc---eEEecCCCCCeEE
Q 001366          893 DCSVKLWNINEKNSLATIK---NIANVCCVQFSAHSSHLLAFGSADY----RTYCYDLRNARAP---WCVLAGHEKAVSY  962 (1092)
Q Consensus       893 Dg~I~iWDl~~~~~l~~l~---~~~~V~sl~fsp~~~~~latgs~Dg----~I~vwDlr~~~~~---~~~l~~H~~~V~~  962 (1092)
                      | .+++|+..++..+....   +...|.+++|+|++. ++++++.|+    .+++||+......   ...+.+|...|++
T Consensus       197 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~  274 (365)
T 4h5i_A          197 S-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS  274 (365)
T ss_dssp             S-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred             e-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence            5 56777777777654332   566799999999995 888888777    6889998865432   3456789999999


Q ss_pred             EEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEE-cCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCC
Q 001366          963 VKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTF-SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSL 1037 (1092)
Q Consensus       963 v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~ 1037 (1092)
                      ++|+ ++.+|++|+.|++|+|||+.        ++.++.++ .+|...|++|+|||||++||+||.|++|+||++..
T Consensus       275 ~~~Spdg~~lasgs~D~~V~iwd~~--------~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          275 MDVDMKGELAVLASNDNSIALVKLK--------DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEECTTSCEEEEEETTSCEEEEETT--------TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEECCCCCceEEEcCCCEEEEEECC--------CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999 67789999999999999998        45677775 68999999999999999999999999999999854

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.96  E-value=2.8e-30  Score=293.67  Aligned_cols=257  Identities=13%  Similarity=0.073  Sum_probs=183.1

Q ss_pred             hHHHhhhc--cccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+...+  +|.|.||+|...+. -...+..++.|++.............++..++...+|||++.++.....+...+ 
T Consensus        31 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-  109 (327)
T 2yfx_A           31 NITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF-  109 (327)
T ss_dssp             GCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE-
T ss_pred             heEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcE-
Confidence            34444444  37899999985321 112245566666643333334444556677788889999998776644332222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcC------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARG------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                                     ++|||++|++|.++|....      ..++..+++.++.||+.||.|||++||+||||||+|||++
T Consensus       110 ---------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~  174 (327)
T 2yfx_A          110 ---------------ILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLT  174 (327)
T ss_dssp             ---------------EEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEES
T ss_pred             ---------------EEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEe
Confidence                           3899999999999997654      3477788999999999999999999999999999999998


Q ss_pred             c---CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccc
Q 001366          364 Q---SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIET  440 (1092)
Q Consensus       364 ~---~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1092)
                      .   ...+||+|||+++.......                                                        
T Consensus       175 ~~~~~~~~kl~Dfg~~~~~~~~~~--------------------------------------------------------  198 (327)
T 2yfx_A          175 CPGPGRVAKIGDFGMARDIYRASY--------------------------------------------------------  198 (327)
T ss_dssp             CSSTTCCEEECCCHHHHHHHC-----------------------------------------------------------
T ss_pred             cCCCcceEEECccccccccccccc--------------------------------------------------------
Confidence            4   44699999999876431100                                                        


Q ss_pred             cCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhH
Q 001366          441 ANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGV  520 (1092)
Q Consensus       441 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGv  520 (1092)
                                                                   ........||+.|+|||++.+..++.++|||||||
T Consensus       199 ---------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  233 (327)
T 2yfx_A          199 ---------------------------------------------YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGV  233 (327)
T ss_dssp             ------------------------------------------------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHH
T ss_pred             ---------------------------------------------cccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHH
Confidence                                                         00001346788999999999999999999999999


Q ss_pred             HHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          521 LFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       521 ll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      +||||++ +   |...... ..+..+.....++.....++.+.+|+.+||++||.+||++.+|+++.++..
T Consensus       234 il~ellt~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~  303 (327)
T 2yfx_A          234 LLWEIFSLGYMPYPSKSNQ-EVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  303 (327)
T ss_dssp             HHHHHHTTSCCSSTTCCHH-HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCcCHH-HHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHh
Confidence            9999997 4   4332222 222222222233333456788999999999999999999999999987654

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.96  E-value=6.9e-31  Score=300.94  Aligned_cols=249  Identities=13%  Similarity=0.141  Sum_probs=182.7

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchh----------------hHhhhhhhhhhccCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD----------------AALKAAGAMMVASNASPKP  274 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~  274 (1092)
                      .|.+...++  +.|.||++.. +     +..++.|++........                .....++...+...+|||+
T Consensus        32 ~y~~~~~lg~G~~g~V~~~~~-~-----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i  105 (348)
T 2pml_X           32 DYRIIRTLNQGKFNKIILCEK-D-----NKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYC  105 (348)
T ss_dssp             TEEEEEEEECCSSCCEEEEEE-T-----TEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTB
T ss_pred             ceEEEEEEcCCCCeEEEEEEc-C-----CceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCc
Confidence            455555554  6799999987 3     45555555432211110                1444566677888899999


Q ss_pred             CccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHH------Hhhc-CCCCCHHHHHHHHHHHHHHHHHhhh
Q 001366          275 VGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREW------LNAR-GHKGKRIECLYIFRQIVALVDYHHT  347 (1092)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~------l~~~-~~~~~~~~~~~i~~qil~~l~~lHs  347 (1092)
                      +.++.....+...+                ++|||++|++|.++      +... ...++..+++.++.||+.||.|||+
T Consensus       106 ~~~~~~~~~~~~~~----------------lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~  169 (348)
T 2pml_X          106 LTCEGIITNYDEVY----------------IIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN  169 (348)
T ss_dssp             CCCSEEEESSSEEE----------------EEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeeCCeEE----------------EEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc
Confidence            98877655433222                38999999999999      6542 4568888999999999999999999


Q ss_pred             -cCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccc
Q 001366          348 -QGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRW  426 (1092)
Q Consensus       348 -~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (1092)
                       +||+||||||+||+++.++.+||+|||+++.....                                            
T Consensus       170 ~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~--------------------------------------------  205 (348)
T 2pml_X          170 EKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK--------------------------------------------  205 (348)
T ss_dssp             TSCEECCCCCGGGEEECTTSCEEECCCTTCEECBTT--------------------------------------------
T ss_pred             cCCEeecCCChHhEEEcCCCcEEEeccccccccccc--------------------------------------------
Confidence             99999999999999999999999999988764310                                            


Q ss_pred             cccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC
Q 001366          427 WSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG  506 (1092)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~  506 (1092)
                                                                                   ......||+.|+|||.+.+
T Consensus       206 -------------------------------------------------------------~~~~~~~~~~y~aPE~~~~  224 (348)
T 2pml_X          206 -------------------------------------------------------------KIKGSRGTYEFMPPEFFSN  224 (348)
T ss_dssp             -------------------------------------------------------------EECSSCSCGGGCCGGGGSS
T ss_pred             -------------------------------------------------------------cccCCCCCcCccCchhhcC
Confidence                                                                         0114568999999999988


Q ss_pred             C-CCCc-cccchhhhHHHHHHcCC---CCcHHHHHHHHHhccccC--CCCC----------------CCCCChhHHHHHH
Q 001366          507 G-VCTT-SSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRI--LPPS----------------FLSENPKEAGFCL  563 (1092)
Q Consensus       507 ~-~~t~-~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~~--~p~~----------------~~~~~~~~~~li~  563 (1092)
                      . .++. ++|||||||++|||+++   |.........+..+....  +|..                ....++.+.+|+.
T Consensus       225 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  304 (348)
T 2pml_X          225 ESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLK  304 (348)
T ss_dssp             CCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHH
T ss_pred             CCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHH
Confidence            7 6766 99999999999999985   443322122222222221  1210                1446788999999


Q ss_pred             hccccCCCCCCCHHHHhhhhhhhhh
Q 001366          564 WQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       564 ~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +||++||.+|||+.|+|+||||...
T Consensus       305 ~~L~~dP~~Rps~~e~l~hp~f~~~  329 (348)
T 2pml_X          305 LFLRKNPAERITSEDALKHEWLADT  329 (348)
T ss_dssp             HHCCSSGGGSCCHHHHHTSGGGTTC
T ss_pred             HHccCChhhCCCHHHHhcCccccCC
Confidence            9999999999999999999999874

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=2.5e-30  Score=288.32  Aligned_cols=245  Identities=14%  Similarity=0.060  Sum_probs=180.6

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..+|.|.||+|...+  ...+..++.|+..............++...+...+|||++.++.....+. .+          
T Consensus        19 g~G~~g~Vy~~~~~~--~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~~----------   85 (287)
T 1u59_A           19 GCGNFGSVRQGVYRM--RKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEA-LM----------   85 (287)
T ss_dssp             ECCTTEEEEEEEEC-----CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSS-EE----------
T ss_pred             cccCceeEEEeEecc--CCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCC-cE----------
Confidence            345789999996421  11234456666544333334445556777788889999998776642111 11          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+|||++|++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++.
T Consensus        86 ------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~  159 (287)
T 1u59_A           86 ------LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKA  159 (287)
T ss_dssp             ------EEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             ------EEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceee
Confidence                  38999999999999987766788989999999999999999999999999999999999999999999999876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .......                                                                         
T Consensus       160 ~~~~~~~-------------------------------------------------------------------------  166 (287)
T 1u59_A          160 LGADDSY-------------------------------------------------------------------------  166 (287)
T ss_dssp             CTTCSCE-------------------------------------------------------------------------
T ss_pred             eccCcce-------------------------------------------------------------------------
Confidence            5411000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~  534 (1092)
                                                 ........||+.|+|||++.+..++.++|||||||++|||++ +   |.....
T Consensus       167 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~  219 (287)
T 1u59_A          167 ---------------------------YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG  219 (287)
T ss_dssp             ---------------------------ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT
T ss_pred             ---------------------------eeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH
Confidence                                       000013456888999999998889999999999999999997 5   332221


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                       ...+..+.....++.....++.+.+|+.+||.++|.+||++.+++++.
T Consensus       220 -~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l  267 (287)
T 1u59_A          220 -PEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  267 (287)
T ss_dssp             -HHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             -HHHHHHHhcCCcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence             122223333333334445688999999999999999999999999975

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.96  E-value=2.9e-30  Score=293.46  Aligned_cols=252  Identities=15%  Similarity=0.118  Sum_probs=164.2

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhh-hhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAM-MVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      +|.+.+.+  +|.|.||++...    ..+..++.|++..............+.. ++....|||++.++.....+...+ 
T Consensus        23 ~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~-   97 (327)
T 3aln_A           23 DLKDLGEIGRGAYGSVNKMVHK----PSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCW-   97 (327)
T ss_dssp             SEEC-CEEEECSSEEEEEEEET----TTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEE-
T ss_pred             HhhehheeccCCCEEEEEEEEc----CCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceE-
Confidence            44455444  478999999863    2255666666543322222333333333 677789999998877655333222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhh----cCCCCCHHHHHHHHHHHHHHHHHhhhc-CccccCCCCCCeEEcc
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNA----RGHKGKRIECLYIFRQIVALVDYHHTQ-GVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~----~~~~~~~~~~~~i~~qil~~l~~lHs~-gIvHrDLKP~Nill~~  364 (1092)
                                     ++|||++| +|.+++..    ....++...+..++.||+.||.|||++ ||+||||||+||+++.
T Consensus        98 ---------------lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~  161 (327)
T 3aln_A           98 ---------------ICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDR  161 (327)
T ss_dssp             ---------------EEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEET
T ss_pred             ---------------EEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcC
Confidence                           37999986 88888853    245678889999999999999999999 9999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.+||+|||+++......                                                             
T Consensus       162 ~~~~kl~Dfg~~~~~~~~~-------------------------------------------------------------  180 (327)
T 3aln_A          162 SGNIKLCDFGISGQLVDSI-------------------------------------------------------------  180 (327)
T ss_dssp             TTEEEECCCSSSCC------------------------------------------------------------------
T ss_pred             CCCEEEccCCCceeccccc-------------------------------------------------------------
Confidence            9999999999887643100                                                             


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccc----cCCCCCccccchhhhH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEEL----SGGVCTTSSNIYSLGV  520 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l----~~~~~t~~sDIwSLGv  520 (1092)
                                                                 ......||+.|+|||.+    .+..++.++|||||||
T Consensus       181 -------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~  217 (327)
T 3aln_A          181 -------------------------------------------AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGI  217 (327)
T ss_dssp             --------------------------------------------------------------------CCSHHHHHHHHH
T ss_pred             -------------------------------------------ccccCCCCccccCceeeccccCcCCCCchhhHHHHHH
Confidence                                                       00133689999999999    4567899999999999


Q ss_pred             HHHHHcCC---CCcHHHHHHHHHhccccCCC----CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          521 LFFELFGR---FDSERALAAAMSDLRDRILP----PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       521 ll~ell~~---f~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      +||||+++   |.........+..+.....+    ......++.+.+|+.+||+.||.+|||+.+|++||||....
T Consensus       218 il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~~  293 (327)
T 3aln_A          218 TLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYE  293 (327)
T ss_dssp             HHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             HHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhChHHHHhH
Confidence            99999986   44433322333222222211    11234678899999999999999999999999999998653

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.96  E-value=3e-30  Score=292.36  Aligned_cols=251  Identities=16%  Similarity=0.109  Sum_probs=182.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccc-cccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFK-ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  +|.|.||+|...+... ..+..++.|++.............++..++...+|||++.++.....+...+  
T Consensus        27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~--  104 (322)
T 1p4o_A           27 ITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTL--  104 (322)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCE--
T ss_pred             eeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCccE--
Confidence            4444444  4789999987532100 1234556665543333333334556777888889999998776644322222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFK  361 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nil  361 (1092)
                                    ++|||++|++|.+++...+         ..++..+++.++.||+.||.|||++||+||||||+||+
T Consensus       105 --------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIl  170 (322)
T 1p4o_A          105 --------------VIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCM  170 (322)
T ss_dssp             --------------EEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEE
T ss_pred             --------------EEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEE
Confidence                          3899999999999996532         34677899999999999999999999999999999999


Q ss_pred             EccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          362 LLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       362 l~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      ++.++.+||+|||+++.......                                                         
T Consensus       171 i~~~~~~kl~Dfg~~~~~~~~~~---------------------------------------------------------  193 (322)
T 1p4o_A          171 VAEDFTVKIGDFGMTRDIYETDY---------------------------------------------------------  193 (322)
T ss_dssp             ECTTCCEEECCTTCCCGGGGGGC---------------------------------------------------------
T ss_pred             EcCCCeEEECcCccccccccccc---------------------------------------------------------
Confidence            99999999999999876441100                                                         


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                                                                  ........||+.|+|||.+.+..++.++|||||||+
T Consensus       194 --------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  229 (322)
T 1p4o_A          194 --------------------------------------------YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV  229 (322)
T ss_dssp             --------------------------------------------EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             --------------------------------------------cccccCCCCCCCccChhhhccCCCCchhhHHHHHHH
Confidence                                                        000113467889999999999899999999999999


Q ss_pred             HHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          522 FFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       522 l~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||||++ +   |..... ......+.....++.....++.+.+|+.+||++||.+|||+.|++++
T Consensus       230 l~el~~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~  293 (322)
T 1p4o_A          230 LWEIATLAEQPYQGLSN-EQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  293 (322)
T ss_dssp             HHHHHHTSCCTTTTSCH-HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHhcCCCccccCCH-HHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            999997 4   333222 22233333333444445667889999999999999999999999997

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.96  E-value=9.5e-31  Score=296.86  Aligned_cols=249  Identities=19%  Similarity=0.202  Sum_probs=177.6

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC-------chhhHhhhhhhhhhccCCCCCCCccccceec
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-------PSDAALKAAGAMMVASNASPKPVGVGTAVVS  283 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (1092)
                      .|.+.+.++  |.|.||++....    .+..++.|++.....       ........++..++...+|||++.++.....
T Consensus        11 ~y~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   86 (322)
T 2ycf_A           11 EYIMSKTLGSGACGEVKLAFERK----TCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA   86 (322)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETT----TTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred             ceeEeeEEecCCCEEEEEEEEcC----CCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC
Confidence            344444443  789999997532    245566665532211       1111223456667788899999987665332


Q ss_pred             CCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          284 NGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                      +. .                ..+|||++|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||++
T Consensus        87 ~~-~----------------~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~  148 (322)
T 2ycf_A           87 ED-Y----------------YIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLS  148 (322)
T ss_dssp             SS-E----------------EEEEECCTTEETHHHHSTTC-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEES
T ss_pred             Cc-e----------------EEEEecCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEe
Confidence            11 1                13899999999999997654 577889999999999999999999999999999999998


Q ss_pred             cCCc---EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccc
Q 001366          364 QSNQ---VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIET  440 (1092)
Q Consensus       364 ~~~~---vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1092)
                      .++.   +||+|||+++.....                                                          
T Consensus       149 ~~~~~~~~kl~Dfg~~~~~~~~----------------------------------------------------------  170 (322)
T 2ycf_A          149 SQEEDCLIKITDFGHSKILGET----------------------------------------------------------  170 (322)
T ss_dssp             SSSSSCCEEECCCTTCEECCCC----------------------------------------------------------
T ss_pred             cCCCCCeEEEccCccceecccc----------------------------------------------------------
Confidence            7665   999999998764310                                                          


Q ss_pred             cCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc---CCCCCccccchh
Q 001366          441 ANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS---GGVCTTSSNIYS  517 (1092)
Q Consensus       441 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~---~~~~t~~sDIwS  517 (1092)
                                                                    .......||+.|+|||++.   ...++.++||||
T Consensus       171 ----------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~s  204 (322)
T 2ycf_A          171 ----------------------------------------------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWS  204 (322)
T ss_dssp             ----------------------------------------------HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHH
T ss_pred             ----------------------------------------------cccccccCCcCccCchhhccCCCCCCCchhhHHH
Confidence                                                          0011456899999999974   467899999999


Q ss_pred             hhHHHHHHcCC---CCcHHH---HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          518 LGVLFFELFGR---FDSERA---LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       518 LGvll~ell~~---f~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      |||+||||+++   |.....   ....+........|..+...++.+.+|+.+||++||.+||++.++|+||||..
T Consensus       205 lG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h~~~~~  280 (322)
T 2ycf_A          205 LGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQD  280 (322)
T ss_dssp             HHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGCC
T ss_pred             HHHHHHHHHhCCCCCcccchHHHHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhCcCcCC
Confidence            99999999986   332211   11222222222222233456788999999999999999999999999999975

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.96  E-value=1.4e-30  Score=303.02  Aligned_cols=247  Identities=14%  Similarity=0.117  Sum_probs=167.9

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCC-----CCccccceecC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPK-----PVGVGTAVVSN  284 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~  284 (1092)
                      .|.+.+.++  |.|.||++...    ..+..++.|+....  ........++..++... .+++     ++.+.......
T Consensus        55 ~y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~  128 (382)
T 2vx3_A           55 RYEIDSLIGKGSFGQVVKAYDR----VEQEWVAIKIIKNK--KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR  128 (382)
T ss_dssp             TEEEEEEEEEETTEEEEEEEET----TTTEEEEEEEECSS--HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET
T ss_pred             eEEEEEEEeecCCEEEEEEEEc----CCCcEEEEEEEecc--HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC
Confidence            355554444  78999999752    22455666665321  11122222333333333 2343     44444433322


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhh--hcCccccCCCCCCeE
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHH--TQGVTFLDLKPSSFK  361 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lH--s~gIvHrDLKP~Nil  361 (1092)
                      ...+                ++|||+.| +|.+++.... ..++...++.++.||+.||.|||  .+||+||||||+|||
T Consensus       129 ~~~~----------------lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIl  191 (382)
T 2vx3_A          129 NHLC----------------LVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENIL  191 (382)
T ss_dssp             TEEE----------------EEEECCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEE
T ss_pred             CceE----------------EEEecCCC-CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEE
Confidence            2222                37999975 9999997654 45788899999999999999999  579999999999999


Q ss_pred             Ec--cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccc
Q 001366          362 LL--QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIE  439 (1092)
Q Consensus       362 l~--~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1092)
                      |+  ..+.+||+|||+++....                                                          
T Consensus       192 l~~~~~~~~kL~DFG~a~~~~~----------------------------------------------------------  213 (382)
T 2vx3_A          192 LCNPKRSAIKIVDFGSSCQLGQ----------------------------------------------------------  213 (382)
T ss_dssp             ESSTTSCCEEECCCTTCEETTC----------------------------------------------------------
T ss_pred             EecCCCCcEEEEeccCceeccc----------------------------------------------------------
Confidence            95  478899999999876431                                                          


Q ss_pred             ccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhh
Q 001366          440 TANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLG  519 (1092)
Q Consensus       440 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLG  519 (1092)
                                                                      .....+||++|+|||++.+..++.++||||||
T Consensus       214 ------------------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG  245 (382)
T 2vx3_A          214 ------------------------------------------------RIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLG  245 (382)
T ss_dssp             ------------------------------------------------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHH
T ss_pred             ------------------------------------------------ccccccCCccccChHHHcCCCCCcHHHHHHHH
Confidence                                                            01145789999999999999999999999999


Q ss_pred             HHHHHHcCC---CCcHHHHHHHHHhccccCCCC-------------------------------------CCC-------
Q 001366          520 VLFFELFGR---FDSERALAAAMSDLRDRILPP-------------------------------------SFL-------  552 (1092)
Q Consensus       520 vll~ell~~---f~~~~~~~~~~~~~~~~~~p~-------------------------------------~~~-------  552 (1092)
                      |+||||+++   |.+................|+                                     ...       
T Consensus       246 ~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  325 (382)
T 2vx3_A          246 CILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILG  325 (382)
T ss_dssp             HHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHT
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhh
Confidence            999999986   554433332222211100000                                     000       


Q ss_pred             ------------------CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          553 ------------------SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       553 ------------------~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                                        ...+.+.+||.+||++||.+|||+.|+|+||||.+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~hp~f~~~  379 (382)
T 2vx3_A          326 VETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKT  379 (382)
T ss_dssp             TTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGCC-
T ss_pred             ccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhcCcccccC
Confidence                              001367899999999999999999999999999864

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.96  E-value=2e-30  Score=292.65  Aligned_cols=255  Identities=15%  Similarity=0.123  Sum_probs=179.9

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.++  |.|.||++..... -...+..++.|+..............++...+... .|||++.++......... 
T Consensus        28 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~-  106 (316)
T 2xir_A           28 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP-  106 (316)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSC-
T ss_pred             heeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCc-
Confidence            344544444  7899999963110 01124556666654333333333444555555555 789999877664322110 


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCC---------------CCHHHHHHHHHHHHHHHHHhhhcCcccc
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHK---------------GKRIECLYIFRQIVALVDYHHTQGVTFL  353 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~---------------~~~~~~~~i~~qil~~l~~lHs~gIvHr  353 (1092)
                                    ..++|||++|++|.+++......               ++..+++.++.||+.||.|||++||+||
T Consensus       107 --------------~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~  172 (316)
T 2xir_A          107 --------------LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHR  172 (316)
T ss_dssp             --------------CEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             --------------eEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence                          11379999999999999765432               7788999999999999999999999999


Q ss_pred             CCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCc
Q 001366          354 DLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSK  433 (1092)
Q Consensus       354 DLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (1092)
                      ||||+||+++.++.+||+|||+++.......                                                 
T Consensus       173 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-------------------------------------------------  203 (316)
T 2xir_A          173 DLAARNILLSEKNVVKICDFGLARDIYKDPD-------------------------------------------------  203 (316)
T ss_dssp             CCSGGGEEECGGGCEEECCCGGGSCTTTCTT-------------------------------------------------
T ss_pred             cCccceEEECCCCCEEECCCccccccccCcc-------------------------------------------------
Confidence            9999999999999999999999876431000                                                 


Q ss_pred             cCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccc
Q 001366          434 YGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSS  513 (1092)
Q Consensus       434 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~s  513 (1092)
                                                                          ........||+.|+|||++.+..++.++
T Consensus       204 ----------------------------------------------------~~~~~~~~~t~~y~aPE~~~~~~~~~~~  231 (316)
T 2xir_A          204 ----------------------------------------------------YVRKGDARLPLKWMAPETIFDRVYTIQS  231 (316)
T ss_dssp             ----------------------------------------------------SEEETTEEECGGGCCHHHHHHCCCCHHH
T ss_pred             ----------------------------------------------------ceeccCCCcceeecCchhhccccccchh
Confidence                                                                0001145678899999999999999999


Q ss_pred             cchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          514 NIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       514 DIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      |||||||++|||++ +   |............+.....++.....++.+.+|+.+||++||.+|||+.++++|.
T Consensus       232 Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  305 (316)
T 2xir_A          232 DVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  305 (316)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            99999999999997 5   4332212222223333233333344678999999999999999999999999873

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.96  E-value=8.5e-31  Score=305.23  Aligned_cols=297  Identities=18%  Similarity=0.116  Sum_probs=163.7

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCC--------CCCCCccccceec
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNA--------SPKPVGVGTAVVS  283 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  283 (1092)
                      |.+.+.++  |.|+||++...    ..+..++.|+....  ........++..++...+        |||++.+++....
T Consensus        39 y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~  112 (397)
T 1wak_A           39 YHVIRKLGWGHFSTVWLSWDI----QGKKFVAMKVVKSA--EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI  112 (397)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEE
T ss_pred             EEEEEEeeecCCeeEEEEEec----CCCeEEEEEEEecC--CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceee
Confidence            55554444  78999999642    12455666665321  111222333444444332        6777776665432


Q ss_pred             CCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhc-CccccCCCCCCeE
Q 001366          284 NGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQ-GVTFLDLKPSSFK  361 (1092)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~-gIvHrDLKP~Nil  361 (1092)
                      .....     ..       ..++|||+ +++|.+++.. ....++..+++.|+.||+.||+|||++ ||+||||||+|||
T Consensus       113 ~~~~~-----~~-------~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIl  179 (397)
T 1wak_A          113 SGVNG-----TH-------ICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENIL  179 (397)
T ss_dssp             EETTE-----EE-------EEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEE
T ss_pred             cCCCC-----ce-------EEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHee
Confidence            11000     00       11378999 5666666644 335688889999999999999999998 9999999999999


Q ss_pred             EccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          362 LLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       362 l~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      |+.++.....+++...............   ......+..                ..+.        ............
T Consensus       180 l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----------------~~~~--------~~~~~~~~~~~~  232 (397)
T 1wak_A          180 LSVNEQYIRRLAAEATEWQRSGAPPPSG---SAVSTAPAT----------------AGNF--------LVNPLEPKNAEK  232 (397)
T ss_dssp             ECCCHHHHHHHHHHHC----------------------------------------CCTT--------SCCTTSGGGGGG
T ss_pred             EeccchhhhhhhhhhHHHhhcCCCCCCC---CccccCCcc----------------cccc--------cccccccccccc
Confidence            9877632111111111100000000000   000000000                0000        000000000011


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                      ...+|.|||.+....                              ...+..+||++|+|||++.+..++.++|||||||+
T Consensus       233 ~~~kl~DfG~a~~~~------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~i  282 (397)
T 1wak_A          233 LKVKIADLGNACWVH------------------------------KHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACM  282 (397)
T ss_dssp             CCEEECCGGGCEETT------------------------------BCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHH
T ss_pred             cceEecccccccccc------------------------------ccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHH
Confidence            123455555332110                              01124578999999999999999999999999999


Q ss_pred             HHHHcCC---CCcH--------HHHHHHHHhccccCCC-----------------------C---------------CCC
Q 001366          522 FFELFGR---FDSE--------RALAAAMSDLRDRILP-----------------------P---------------SFL  552 (1092)
Q Consensus       522 l~ell~~---f~~~--------~~~~~~~~~~~~~~~p-----------------------~---------------~~~  552 (1092)
                      ||||+++   |.+.        ......+..+.....+                       .               ...
T Consensus       283 l~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (397)
T 1wak_A          283 AFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQ  362 (397)
T ss_dssp             HHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCH
T ss_pred             HHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccch
Confidence            9999986   4321        1122222111111000                       0               000


Q ss_pred             CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          553 SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       553 ~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                      ..++.+.+||.+||++||.+|||+.|+|+||||+
T Consensus       363 ~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  396 (397)
T 1wak_A          363 EEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN  396 (397)
T ss_dssp             HHHHHHHHHHGGGGCSSGGGSCCHHHHHTSGGGG
T ss_pred             hhHHHHHHHHHHHhccChhhcCCHHHHhhCcccc
Confidence            1124577999999999999999999999999996

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=4.9e-30  Score=292.84  Aligned_cols=246  Identities=12%  Similarity=0.097  Sum_probs=174.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||+|.....-...+..++.|++.............++..++...+|||++.++.........+           
T Consensus        54 ~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-----------  122 (333)
T 1mqb_A           54 AGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM-----------  122 (333)
T ss_dssp             ECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE-----------
T ss_pred             cCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE-----------
Confidence            347899999875321111122355555533222223334556677788889999998776644322222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           ++|||++|++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++..
T Consensus       123 -----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~  197 (333)
T 1mqb_A          123 -----IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVL  197 (333)
T ss_dssp             -----EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             -----EEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhh
Confidence                 389999999999999877677889899999999999999999999999999999999999999999999998765


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ......                                                                          
T Consensus       198 ~~~~~~--------------------------------------------------------------------------  203 (333)
T 1mqb_A          198 EDDPEA--------------------------------------------------------------------------  203 (333)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            411000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERAL  535 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~~  535 (1092)
                                                ........+|+.|+|||++.+..++.++|||||||+||||++ +   |......
T Consensus       204 --------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~  257 (333)
T 1mqb_A          204 --------------------------TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH  257 (333)
T ss_dssp             ---------------------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH
T ss_pred             --------------------------ccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH
Confidence                                      000012346788999999999999999999999999999997 5   4322222


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       ..+..+.....++.....++.+.+|+.+||+.||.+||++.+++++
T Consensus       258 -~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  303 (333)
T 1mqb_A          258 -EVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSI  303 (333)
T ss_dssp             -HHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             -HHHHHHHCCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence             2233333333334445567889999999999999999999999885

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.96  E-value=2.1e-30  Score=294.78  Aligned_cols=247  Identities=17%  Similarity=0.162  Sum_probs=169.3

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCC------CCccccceecCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPK------PVGVGTAVVSNG  285 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  285 (1092)
                      |.+.+.++  +.|.||++....   ..+..++.|+....  ........++...+...+|++      ++.+++....+.
T Consensus        16 y~~~~~lg~G~~g~V~~~~~~~---~~~~~vavK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~   90 (339)
T 1z57_A           16 YEIVDTLGEGAFGKVVECIDHK---AGGRHVAVKIVKNV--DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG   90 (339)
T ss_dssp             EEEEEEEEEETTEEEEEEEETT---TTTEEEEEEEECSS--HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT
T ss_pred             eEEEEEEecCCCeEEEEEEecC---CCCcEEEEEEEecC--CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC
Confidence            55555544  789999986411   11445666665321  122233334444444444443      444444333222


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                      ..+                ++|||+ |++|.+++...+ ..++..+++.++.||+.||+|||++||+||||||+|||++.
T Consensus        91 ~~~----------------lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~  153 (339)
T 1z57_A           91 HIC----------------IVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQ  153 (339)
T ss_dssp             EEE----------------EEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESC
T ss_pred             cEE----------------EEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEec
Confidence            222                379999 999999997665 35788899999999999999999999999999999999987


Q ss_pred             -------------------CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccc
Q 001366          365 -------------------SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSR  425 (1092)
Q Consensus       365 -------------------~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (1092)
                                         ++.+|++|||+++....                                            
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~--------------------------------------------  189 (339)
T 1z57_A          154 SDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDE--------------------------------------------  189 (339)
T ss_dssp             CCEEEEEC----CEEEEESCCCEEECCCSSCEETTS--------------------------------------------
T ss_pred             cccccccCCccccccccccCCCceEeeCcccccCcc--------------------------------------------
Confidence                               56788999987754220                                            


Q ss_pred             ccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc
Q 001366          426 WWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS  505 (1092)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~  505 (1092)
                                                                                    ......||+.|+|||++.
T Consensus       190 --------------------------------------------------------------~~~~~~gt~~y~aPE~~~  207 (339)
T 1z57_A          190 --------------------------------------------------------------HHSTLVSTRHYRAPEVIL  207 (339)
T ss_dssp             --------------------------------------------------------------CCCSSCSCGGGCCHHHHT
T ss_pred             --------------------------------------------------------------ccccccCCccccChHHhh
Confidence                                                                          001356899999999999


Q ss_pred             CCCCCccccchhhhHHHHHHcCC---CCcHHHH--HHHHHhccccCCCC-------------------------------
Q 001366          506 GGVCTTSSNIYSLGVLFFELFGR---FDSERAL--AAAMSDLRDRILPP-------------------------------  549 (1092)
Q Consensus       506 ~~~~t~~sDIwSLGvll~ell~~---f~~~~~~--~~~~~~~~~~~~p~-------------------------------  549 (1092)
                      +..++.++|||||||+||||+++   |......  ...+..+.. .+|+                               
T Consensus       208 ~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (339)
T 1z57_A          208 ALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILG-PLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSR  286 (339)
T ss_dssp             TSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHC-SCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHH
T ss_pred             CCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhC-CCCHHHHhhccchhHHhhccccccccccccchhhh
Confidence            99999999999999999999986   4433222  122211111 1110                               


Q ss_pred             ----------CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          550 ----------SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       550 ----------~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                                .....++.+.+|+.+||++||.+|||+.|+|+||||...+
T Consensus       287 ~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  336 (339)
T 1z57_A          287 ACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDLLK  336 (339)
T ss_dssp             HCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGGG
T ss_pred             cCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCHHHHHHh
Confidence                      0011135678999999999999999999999999998754

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.96  E-value=3.5e-30  Score=290.68  Aligned_cols=266  Identities=19%  Similarity=0.167  Sum_probs=179.0

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.++  |.|.||++...+    .+..++.|++... .........++...+...+|||++.+++..........  
T Consensus        13 y~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~--   85 (320)
T 2i6l_A           13 YMDLKPLGCGGNGLVFSAVDND----CDKRVAIKKIVLT-DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLT--   85 (320)
T ss_dssp             EEEEEECC-----CEEEEEETT----TTEEEEEEEEECC-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCC--
T ss_pred             eeEEEEeccCCCeEEEEEEECC----CCeEEEEEEEecC-ChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccc--
Confidence            44444444  689999997632    3455666655322 22233445567778888899999987665432211110  


Q ss_pred             cCCCCCccc--cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc-cCCcE
Q 001366          292 RTGVPASCW--IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL-QSNQV  368 (1092)
Q Consensus       292 ~~~~~~~~~--~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~-~~~~v  368 (1092)
                       ..+ ..+.  ....++|||++ ++|.++++..  .++..+++.++.||+.||+|||++||+||||||+||+++ .++.+
T Consensus        86 -~~~-~~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~  160 (320)
T 2i6l_A           86 -DDV-GSLTELNSVYIVQEYME-TDLANVLEQG--PLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVL  160 (320)
T ss_dssp             -C-----CCSCSEEEEEEECCS-EEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEE
T ss_pred             -ccc-ccccccCceeEEeeccC-CCHHHHhhcC--CccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeE
Confidence             000 0000  11235899998 4999999753  577889999999999999999999999999999999997 56799


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.......                                                                
T Consensus       161 kl~Dfg~~~~~~~~~~----------------------------------------------------------------  176 (320)
T 2i6l_A          161 KIGDFGLARIMDPHYS----------------------------------------------------------------  176 (320)
T ss_dssp             EECCCTTCBCC---------------------------------------------------------------------
T ss_pred             EEccCccccccCCCcc----------------------------------------------------------------
Confidence            9999999876431000                                                                


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                          .........||++|+|||++.+ ..++.++|||||||+||||++
T Consensus       177 ------------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~  220 (320)
T 2i6l_A          177 ------------------------------------HKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLT  220 (320)
T ss_dssp             ---------------------------------------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------cccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHh
Confidence                                                0001124567999999999876 678999999999999999998


Q ss_pred             C---CCcHHHHHHHHHhccccCC-----------------------C-----CCCCCCChhHHHHHHhccccCCCCCCCH
Q 001366          528 R---FDSERALAAAMSDLRDRIL-----------------------P-----PSFLSENPKEAGFCLWQLHPEPLSRPTT  576 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~-----------------------p-----~~~~~~~~~~~~li~~lL~~dP~~Rpsa  576 (1092)
                      +   |.+................                       +     ......++.+.+|+.+||++||.+|||+
T Consensus       221 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~  300 (320)
T 2i6l_A          221 GKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTA  300 (320)
T ss_dssp             SSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCH
Confidence            5   5443332222211111000                       0     1123467889999999999999999999


Q ss_pred             HHHhhhhhhhhhhcc
Q 001366          577 REILQSEVTNEFQEV  591 (1092)
Q Consensus       577 ~eiL~~~~~~~~~~~  591 (1092)
                      .|+|+||||.....+
T Consensus       301 ~ell~hp~~~~~~~p  315 (320)
T 2i6l_A          301 EEALSHPYMSIYSFP  315 (320)
T ss_dssp             HHHHTSHHHHTTCC-
T ss_pred             HHHhCCcccccccCc
Confidence            999999999875443

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.96  E-value=5.9e-30  Score=281.73  Aligned_cols=244  Identities=15%  Similarity=0.111  Sum_probs=181.0

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      +..|.+.+.++  |.|.||+|...      +..++.|++...... .......++...+...+|||++.++........ 
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~------~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-   81 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRWQ------GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPA-   81 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEET------TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTS-
T ss_pred             HHHhHHHHHhcCCCcceEEEEEEC------CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCC-
Confidence            44555555554  78999999873      344566665433322 233445567777888899999987765432210 


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHhhhcC--ccccCCCCCCeEEcc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH-KGKRIECLYIFRQIVALVDYHHTQG--VTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~-~~~~~~~~~i~~qil~~l~~lHs~g--IvHrDLKP~Nill~~  364 (1092)
                            ...       ..+|||++|++|.+++..... .++..+++.|+.||+.||.|||++|  |+||||||+||+++.
T Consensus        82 ------~~~-------~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~  148 (271)
T 3kmu_A           82 ------PHP-------TLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDE  148 (271)
T ss_dssp             ------SSC-------EEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECT
T ss_pred             ------CCe-------EeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcC
Confidence                  111       138999999999999977543 5788899999999999999999999  999999999999999


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.++++|||++....                                                                
T Consensus       149 ~~~~~l~~~~~~~~~~----------------------------------------------------------------  164 (271)
T 3kmu_A          149 DMTARISMADVKFSFQ----------------------------------------------------------------  164 (271)
T ss_dssp             TSCEEEEGGGSCCTTS----------------------------------------------------------------
T ss_pred             CcceeEEeccceeeec----------------------------------------------------------------
Confidence            9999999887543211                                                                


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCc---cccchhhhHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTT---SSNIYSLGVL  521 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~---~sDIwSLGvl  521 (1092)
                                                                  .....||+.|+|||.+.+..++.   ++|||||||+
T Consensus       165 --------------------------------------------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~i  200 (271)
T 3kmu_A          165 --------------------------------------------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVL  200 (271)
T ss_dssp             --------------------------------------------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHH
T ss_pred             --------------------------------------------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHH
Confidence                                                        01346789999999998865544   8999999999


Q ss_pred             HHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          522 FFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       522 l~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      +|||+++   |..................++.....++.+.+|+.+||++||.+|||+.++++.
T Consensus       201 l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  264 (271)
T 3kmu_A          201 LWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPI  264 (271)
T ss_dssp             HHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            9999985   544444444444444444444445668899999999999999999999999873

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.96  E-value=2.6e-30  Score=293.87  Aligned_cols=249  Identities=15%  Similarity=0.098  Sum_probs=177.8

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccc--cccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMI--DTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSN  284 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  284 (1092)
                      .+..|.+.+.++  |.|.||++....    .+..+  +.|+..............++...+... +|||++.+++....+
T Consensus        23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~----~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~   98 (327)
T 1fvr_A           23 DWNDIKFQDVIGEGNFGQVLKARIKK----DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR   98 (327)
T ss_dssp             CGGGCEEEEEEECGGGCEEEEEEEEE----TTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET
T ss_pred             cHHHccceeeeecCCCceEEEEEEcc----CCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeC
Confidence            344555555554  789999997622    12222  333332222222223344555667777 899999887765543


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcC
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQG  349 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~g  349 (1092)
                      ...+                ++|||++|++|.+++...+               ..++..+++.++.||+.||.|||++|
T Consensus        99 ~~~~----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~  162 (327)
T 1fvr_A           99 GYLY----------------LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ  162 (327)
T ss_dssp             TEEE----------------EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CceE----------------EEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            3333                3899999999999997653               46888899999999999999999999


Q ss_pred             ccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccc
Q 001366          350 VTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSL  429 (1092)
Q Consensus       350 IvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (1092)
                      |+||||||+||+++.++.+||+|||+++......                                              
T Consensus       163 ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~----------------------------------------------  196 (327)
T 1fvr_A          163 FIHRDLAARNILVGENYVAKIADFGLSRGQEVYV----------------------------------------------  196 (327)
T ss_dssp             EECSCCSGGGEEECGGGCEEECCTTCEESSCEEC----------------------------------------------
T ss_pred             ccCCCCccceEEEcCCCeEEEcccCcCccccccc----------------------------------------------
Confidence            9999999999999999999999999886422000                                              


Q ss_pred             ccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC
Q 001366          430 FPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC  509 (1092)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~  509 (1092)
                                                                                ......+|+.|+|||.+.+..+
T Consensus       197 ----------------------------------------------------------~~~~~~~~~~y~aPE~~~~~~~  218 (327)
T 1fvr_A          197 ----------------------------------------------------------KKTMGRLPVRWMAIESLNYSVY  218 (327)
T ss_dssp             ----------------------------------------------------------CC----CCTTTCCHHHHHHCEE
T ss_pred             ----------------------------------------------------------cccCCCCCccccChhhhccccC
Confidence                                                                      0012346778999999998889


Q ss_pred             CccccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          510 TTSSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       510 t~~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      +.++|||||||+||||++ +   |..... ...+..+.....++.....++.+.+|+.+||++||.+|||+.+++++-
T Consensus       219 ~~~~Di~slG~il~ellt~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  295 (327)
T 1fvr_A          219 TTNSDVWSYGVLLWEIVSLGGTPYCGMTC-AELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL  295 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCCH-HHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CchhcchHHHHHHHHHHcCCCCCCCCCcH-HHHHHHhhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            999999999999999997 5   433322 223333333333344445678899999999999999999999999873

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.96  E-value=2.7e-30  Score=285.05  Aligned_cols=242  Identities=20%  Similarity=0.195  Sum_probs=173.1

Q ss_pred             hhHHHhhhc--cccceeeeCCCCCccccccccccccccccccCc---hhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          212 SEFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP---SDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       212 ~~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      .+|.+.+.+  +|.|.||++...      +..++.|++......   .......++..++...+|||++.++.....+..
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFWI------GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPN   80 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEET------TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--
T ss_pred             hheeeeeeeccCCCeEEEEEEEc------CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCc
Confidence            344444444  478999999863      344555554322111   112334456667778899999987766443332


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcC---ccccCCCCCCeEEc
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQG---VTFLDLKPSSFKLL  363 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~g---IvHrDLKP~Nill~  363 (1092)
                      .+                .+|||++|++|.++++..  .++..+++.++.||+.||.|||++|   |+||||||+||+++
T Consensus        81 ~~----------------lv~e~~~~~~L~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~  142 (271)
T 3dtc_A           81 LC----------------LVMEFARGGPLNRVLSGK--RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILIL  142 (271)
T ss_dssp             CE----------------EEEECCTTEEHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEES
T ss_pred             eE----------------EEEEcCCCCCHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEe
Confidence            22                389999999999999643  6788899999999999999999999   89999999999998


Q ss_pred             c--------CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccC
Q 001366          364 Q--------SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYG  435 (1092)
Q Consensus       364 ~--------~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (1092)
                      .        .+.+|++|||+++......                                                    
T Consensus       143 ~~~~~~~~~~~~~kl~Dfg~~~~~~~~~----------------------------------------------------  170 (271)
T 3dtc_A          143 QKVENGDLSNKILKITDFGLAREWHRTT----------------------------------------------------  170 (271)
T ss_dssp             SCCSSSCCSSCCEEECCCCC------------------------------------------------------------
T ss_pred             cccccccccCcceEEccCCccccccccc----------------------------------------------------
Confidence            6        7789999999886543100                                                    


Q ss_pred             CcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccc
Q 001366          436 NKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNI  515 (1092)
Q Consensus       436 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDI  515 (1092)
                                                                           .....||+.|+|||.+.+..++.++||
T Consensus       171 -----------------------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~Di  197 (271)
T 3dtc_A          171 -----------------------------------------------------KMSAAGAYAWMAPEVIRASMFSKGSDV  197 (271)
T ss_dssp             ----------------------------------------------------------CCGGGSCHHHHHHCCCSHHHHH
T ss_pred             -----------------------------------------------------ccCCCCccceeCHHHhccCCCCchhhH
Confidence                                                                 003468899999999999899999999


Q ss_pred             hhhhHHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          516 YSLGVLFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       516 wSLGvll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |||||++|||+++   |..................++.....++.+.+|+.+||++||.+|||+.|++++
T Consensus       198 ~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  267 (271)
T 3dtc_A          198 WSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQ  267 (271)
T ss_dssp             HHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHH
Confidence            9999999999985   544444444333333333334445567889999999999999999999999985

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.96  E-value=3.2e-30  Score=293.73  Aligned_cols=245  Identities=13%  Similarity=0.100  Sum_probs=174.5

Q ss_pred             cccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          221 KGKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      +|.|.||++..... -......++.|+..............++...+... +|||++.++.........+          
T Consensus        57 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~----------  126 (333)
T 2i1m_A           57 GAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVL----------  126 (333)
T ss_dssp             CSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE----------
T ss_pred             CCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceE----------
Confidence            47899999975220 01112234555543332222334445666667776 8999998877654333222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhc-------------CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNAR-------------GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~-------------~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                            ++|||++|++|.++|...             ...++..+++.++.||+.||+|||++||+||||||+|||++.+
T Consensus       127 ------lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~  200 (333)
T 2i1m_A          127 ------VITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNG  200 (333)
T ss_dssp             ------EEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGG
T ss_pred             ------EEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCC
Confidence                  389999999999999653             2356888999999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++.......                                                             
T Consensus       201 ~~~kl~Dfg~~~~~~~~~~-------------------------------------------------------------  219 (333)
T 2i1m_A          201 HVAKIGDFGLARDIMNDSN-------------------------------------------------------------  219 (333)
T ss_dssp             GEEEBCCCGGGCCGGGCTT-------------------------------------------------------------
T ss_pred             CeEEECccccccccccccc-------------------------------------------------------------
Confidence            9999999999876441100                                                             


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                                                              ........||+.|+|||.+.+..++.++|||||||+||||
T Consensus       220 ----------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el  259 (333)
T 2i1m_A          220 ----------------------------------------YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEI  259 (333)
T ss_dssp             ----------------------------------------SEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------eeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHH
Confidence                                                    0000134578889999999998999999999999999999


Q ss_pred             cC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          526 FG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       526 l~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ++ +   |............+.....++.....++.+.+|+.+||++||.+|||+.+++++
T Consensus       260 ~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  320 (333)
T 2i1m_A          260 FSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSF  320 (333)
T ss_dssp             TTTSCCSSTTCCSSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HcCCCCCCcccchhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHH
Confidence            97 4   433221122222222222233333457889999999999999999999999874

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.96  E-value=3.6e-30  Score=292.44  Aligned_cols=240  Identities=14%  Similarity=0.082  Sum_probs=171.0

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||+|...      +..++.|++...  ........++...+...+||||+.++..........     .-    
T Consensus        34 ~G~~g~Vy~~~~~------~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~-----~~----   96 (322)
T 3soc_A           34 RGRFGCVWKAQLL------NEYVAVKIFPIQ--DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVD-----VD----   96 (322)
T ss_dssp             CSTTCEEEEEEET------TEEEEEEEECGG--GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSS-----EE----
T ss_pred             ccCceEEEEEEEC------CCEEEEEEeecC--chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCC-----ce----
Confidence            3588999999763      355666665332  222333444666778889999999877655432211     00    


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhc----------CccccCCCCCCeEEccCCcEE
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQ----------GVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~----------gIvHrDLKP~Nill~~~~~vk  369 (1092)
                         ..++||||+|++|.++|+..  .++..+++.++.||+.||.|||++          ||+||||||+|||++.++.+|
T Consensus        97 ---~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~k  171 (322)
T 3soc_A           97 ---LWLITAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTAC  171 (322)
T ss_dssp             ---EEEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEE
T ss_pred             ---EEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEE
Confidence               11389999999999999775  488889999999999999999999          999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++.......                                                                 
T Consensus       172 L~DFg~a~~~~~~~~-----------------------------------------------------------------  186 (322)
T 3soc_A          172 IADFGLALKFEAGKS-----------------------------------------------------------------  186 (322)
T ss_dssp             ECCCTTCEEECTTSC-----------------------------------------------------------------
T ss_pred             EccCCcccccccccC-----------------------------------------------------------------
Confidence            999999976541100                                                                 


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----CCCCccccchhhhHHHHH
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----GVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----~~~t~~sDIwSLGvll~e  524 (1092)
                                                          ........||+.|+|||++.+     ..++.++|||||||+|||
T Consensus       187 ------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~e  230 (322)
T 3soc_A          187 ------------------------------------AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWE  230 (322)
T ss_dssp             ------------------------------------CCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------ccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHH
Confidence                                                000114578999999999987     356789999999999999


Q ss_pred             HcCC---CCcHH---------------HHHHHHHhccccCCCCCCCC------CChhHHHHHHhccccCCCCCCCHHHHh
Q 001366          525 LFGR---FDSER---------------ALAAAMSDLRDRILPPSFLS------ENPKEAGFCLWQLHPEPLSRPTTREIL  580 (1092)
Q Consensus       525 ll~~---f~~~~---------------~~~~~~~~~~~~~~p~~~~~------~~~~~~~li~~lL~~dP~~Rpsa~eiL  580 (1092)
                      |+++   |.+..               ...............+.+..      ..+.+.+|+.+||++||.+|||+.|++
T Consensus       231 l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell  310 (322)
T 3soc_A          231 LASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVG  310 (322)
T ss_dssp             HHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             HHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHH
Confidence            9986   32110               11111111112222222111      124488999999999999999999998


Q ss_pred             hh
Q 001366          581 QS  582 (1092)
Q Consensus       581 ~~  582 (1092)
                      +.
T Consensus       311 ~~  312 (322)
T 3soc_A          311 ER  312 (322)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.96  E-value=5.7e-30  Score=281.63  Aligned_cols=244  Identities=16%  Similarity=0.136  Sum_probs=180.0

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.+.+.+  ++.|.||++...+     +..++.|++.....  ......++...+...+|||++.++.....+...+  
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~-----~~~vaiK~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~--   79 (267)
T 3t9t_A            9 ELTFVQEIGSGQFGLVHLGYWLN-----KDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC--   79 (267)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETT-----TEEEEEEEECTTTB--CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCE--
T ss_pred             heeeeeEecCCCceeEEEEEecC-----CCeEEEEEccccCC--CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeE--
Confidence            44444444  4789999998643     34455555533222  2234455666777889999998776654332222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    .+|||++|++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+|+
T Consensus        80 --------------lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl  145 (267)
T 3t9t_A           80 --------------LVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKV  145 (267)
T ss_dssp             --------------EEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEE
T ss_pred             --------------EEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEE
Confidence                          389999999999999887667888899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.......                                                                  
T Consensus       146 ~dfg~~~~~~~~~~------------------------------------------------------------------  159 (267)
T 3t9t_A          146 SDFGMTRFVLDDQY------------------------------------------------------------------  159 (267)
T ss_dssp             CCTTGGGGBCCHHH------------------------------------------------------------------
T ss_pred             cccccccccccccc------------------------------------------------------------------
Confidence            99999876431000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......||+.|+|||++.+..++.++|||||||++|||++ + 
T Consensus       160 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~  203 (267)
T 3t9t_A          160 ------------------------------------TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGK  203 (267)
T ss_dssp             ------------------------------------HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             ------------------------------------cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCC
Confidence                                                00013356778999999998899999999999999999998 4 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                        |...... .....+.....+......++.+.+|+.+||+.||.+||++.+++++
T Consensus       204 ~p~~~~~~~-~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (267)
T 3t9t_A          204 IPYENRSNS-EVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ  258 (267)
T ss_dssp             CTTTTCCHH-HHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCHH-HHHHHHhcCCcCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence              3332222 2222232222222233457889999999999999999999999975

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.96  E-value=9.4e-30  Score=288.91  Aligned_cols=250  Identities=14%  Similarity=0.103  Sum_probs=177.1

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||++...+     +..++.|+..............++..++...+|||++.++.........+   
T Consensus        32 y~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~---  103 (326)
T 3uim_A           32 FSNKNILGRGGFGKVYKGRLAD-----GTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL---  103 (326)
T ss_dssp             SCSTTEEECCSSSEEEEECCSS-----SCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCE---
T ss_pred             cccceeEecCCCcEEEEEEecC-----CCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCceE---
Confidence            4444433  4789999998644     45566665543322222223455666788889999998777654332222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHhhhc---CccccCCCCCCeEEccC
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARG---HKGKRIECLYIFRQIVALVDYHHTQ---GVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---~~~~~~~~~~i~~qil~~l~~lHs~---gIvHrDLKP~Nill~~~  365 (1092)
                                   .+|||++|++|.+++....   ..++...++.|+.||+.||+|||++   ||+||||||+|||++.+
T Consensus       104 -------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~  170 (326)
T 3uim_A          104 -------------LVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEE  170 (326)
T ss_dssp             -------------EEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTT
T ss_pred             -------------EEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCC
Confidence                         3899999999999997643   3478889999999999999999999   99999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++......                                                              
T Consensus       171 ~~~kl~Dfg~~~~~~~~~--------------------------------------------------------------  188 (326)
T 3uim_A          171 FEAVVGDFGLAKLMDYKD--------------------------------------------------------------  188 (326)
T ss_dssp             CCEEECCCSSCEECCSSS--------------------------------------------------------------
T ss_pred             CCEEeccCccccccCccc--------------------------------------------------------------
Confidence            999999999987643100                                                              


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                                                              ........||+.|+|||.+.+..++.++|||||||++|||
T Consensus       189 ----------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l  228 (326)
T 3uim_A          189 ----------------------------------------THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLEL  228 (326)
T ss_dssp             ----------------------------------------SCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHH
Confidence                                                    0001134689999999999988999999999999999999


Q ss_pred             cCCCCcHHH----------HHHHHHhc-cccCCC--------CCC-CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          526 FGRFDSERA----------LAAAMSDL-RDRILP--------PSF-LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       526 l~~f~~~~~----------~~~~~~~~-~~~~~p--------~~~-~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      +++..+...          ...+.... ....+.        +.+ ....+.+.+|+.+||++||.+|||+.||+++..-
T Consensus       229 ~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~  308 (326)
T 3uim_A          229 ITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG  308 (326)
T ss_dssp             HHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred             HhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence            986332211          11111111 111111        111 1112557899999999999999999999998754


Q ss_pred             h
Q 001366          586 N  586 (1092)
Q Consensus       586 ~  586 (1092)
                      .
T Consensus       309 ~  309 (326)
T 3uim_A          309 D  309 (326)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.96  E-value=3.9e-30  Score=290.49  Aligned_cols=253  Identities=15%  Similarity=0.121  Sum_probs=172.7

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHh-hhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAAL-KAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      +.+|.+...++  |.|.||++...    ..+..++.|++........... ......++....|||++.++.....+...
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~   99 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFR----KTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDV   99 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEET----TTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             hccccccceeeecCCeeEEEEEEe----cCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcE
Confidence            44555555554  68999999763    1245666666543333222222 23333457778999999887765543332


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhc-CccccCCCCCCeEEccCC
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQ-GVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~-gIvHrDLKP~Nill~~~~  366 (1092)
                      +                ++|||+ |+.+..++......++...++.++.||+.||.|||++ ||+||||||+||+++.++
T Consensus       100 ~----------------lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~  162 (318)
T 2dyl_A          100 F----------------IAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERG  162 (318)
T ss_dssp             E----------------EEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTS
T ss_pred             E----------------EEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCC
Confidence            3                379998 6677777766566788889999999999999999995 999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++......                                                               
T Consensus       163 ~~kl~dfg~~~~~~~~~---------------------------------------------------------------  179 (318)
T 2dyl_A          163 QIKLCDFGISGRLVDDK---------------------------------------------------------------  179 (318)
T ss_dssp             CEEECCCTTC----------------------------------------------------------------------
T ss_pred             CEEEEECCCchhccCCc---------------------------------------------------------------
Confidence            99999999886543100                                                               


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-----CCCCCccccchhhhHH
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-----GGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-----~~~~t~~sDIwSLGvl  521 (1092)
                                                               ......||+.|+|||++.     +..++.++|||||||+
T Consensus       180 -----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~i  218 (318)
T 2dyl_A          180 -----------------------------------------AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGIS  218 (318)
T ss_dssp             ------------------------------------------------CCTTCCHHHHC--------CCTHHHHHHHHHH
T ss_pred             -----------------------------------------cccccCCCccccChhhcccccccccCCccccchhhHHHH
Confidence                                                     001346899999999995     4568999999999999


Q ss_pred             HHHHcCC---CCcHHHHHHHHHhcccc--CCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          522 FFELFGR---FDSERALAAAMSDLRDR--ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       522 l~ell~~---f~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ||||+++   |.........+..+...  ...+.....++.+.+|+.+||++||.+||++.+||+||||...
T Consensus       219 l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  290 (318)
T 2dyl_A          219 LVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKRY  290 (318)
T ss_dssp             HHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHHH
T ss_pred             HHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHHHHhhCHHHHhc
Confidence            9999985   43311112222222221  2223334568899999999999999999999999999999865

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.96  E-value=6.9e-30  Score=290.93  Aligned_cols=241  Identities=12%  Similarity=0.093  Sum_probs=174.1

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      +|.|.||+|...    ..+..++.|+.......   ....++...+... .|||++.++.........+           
T Consensus        20 G~~g~V~~~~~~----~~~~~vavK~~~~~~~~---~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~-----------   81 (330)
T 2izr_A           20 GNFGELRLGKNL----YTNEYVAIKLEPMKSRA---PQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNA-----------   81 (330)
T ss_dssp             -CTTSEEEEEET----TTTEEEEEEEEETTCSS---CCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEE-----------
T ss_pred             cCCceEEEEEEC----CCCcEEEEEEeccccch---HHHHHHHHHHHHhhCCCCCCEEEEEEecCCccE-----------
Confidence            478999999842    22556666665332221   1223444555565 8999998876655433333           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc-----EEEeccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ-----VKYIGPI  374 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~-----vkl~Dfg  374 (1092)
                           .+|||+ |++|.+++...+..++..+++.|+.||+.||+|||++||+||||||+|||++.++.     +||+|||
T Consensus        82 -----lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg  155 (330)
T 2izr_A           82 -----MVLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFA  155 (330)
T ss_dssp             -----EEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCT
T ss_pred             -----EEEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcc
Confidence                 389999 99999999876667899999999999999999999999999999999999998887     9999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.+.......                                                                    
T Consensus       156 ~a~~~~~~~~~~--------------------------------------------------------------------  167 (330)
T 2izr_A          156 LAKEYIDPETKK--------------------------------------------------------------------  167 (330)
T ss_dssp             TCEESBCTTTCC--------------------------------------------------------------------
T ss_pred             cceeeecCCCCc--------------------------------------------------------------------
Confidence            998754211000                                                                    


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCc
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                  ..+.......+||+.|+|||.+.+..++.++|||||||+||||+++   |..
T Consensus       168 ----------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~  219 (330)
T 2izr_A          168 ----------------------------HIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQG  219 (330)
T ss_dssp             ----------------------------BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             ----------------------------cccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccc
Confidence                                        0001112256899999999999999999999999999999999986   432


Q ss_pred             H--HHHHHHHHh---ccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          532 E--RALAAAMSD---LRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       532 ~--~~~~~~~~~---~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      .  ......+..   ......++......|.+.+|+.+||..||.+||++.+|++
T Consensus       220 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          220 LKADTLKERYQKIGDTKRATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             CCCSSHHHHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             cccccHHHHHHHHHhhhccCCHHHHhccChHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            1  112222222   2222222233444668999999999999999999998886

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.96  E-value=1.2e-29  Score=282.79  Aligned_cols=248  Identities=16%  Similarity=0.208  Sum_probs=181.7

Q ss_pred             HHHhhhcc--ccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.++  |.|.||++....    .+..++.|++.... .........++...+...+|||++.++.........+  
T Consensus        24 y~i~~~lg~G~~g~V~~~~~~~----~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~--   97 (287)
T 2wei_A           24 YNIVCMLGKGSFGEVLKCKDRI----TQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY--   97 (287)
T ss_dssp             EEEEEEEEEETTEEEEEEEETT----TCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE--
T ss_pred             ceeeEEEcCCCCEEEEEEEEcC----CCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE--
Confidence            44444443  789999997631    24556666653222 1223344456677788889999998776644322222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC---c
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN---Q  367 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~---~  367 (1092)
                                    .+|||++|++|.+++...+ .++..+++.++.||+.||.|||++||+||||||+||+++..+   .
T Consensus        98 --------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~  162 (287)
T 2wei_A           98 --------------IVGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCD  162 (287)
T ss_dssp             --------------EEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCC
T ss_pred             --------------EEEEccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCccc
Confidence                          3899999999999997654 477889999999999999999999999999999999997644   6


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||+++.....                                                                 
T Consensus       163 ~kL~Dfg~~~~~~~~-----------------------------------------------------------------  177 (287)
T 2wei_A          163 IKIIDFGLSTCFQQN-----------------------------------------------------------------  177 (287)
T ss_dssp             EEECSTTGGGTBCCC-----------------------------------------------------------------
T ss_pred             EEEeccCcceeecCC-----------------------------------------------------------------
Confidence            999999988764310                                                                 


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                             .......||+.|+|||.+.+ .++.++|||||||+||+|++
T Consensus       178 ---------------------------------------~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~  217 (287)
T 2wei_A          178 ---------------------------------------TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLS  217 (287)
T ss_dssp             ---------------------------------------SSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHh
Confidence                                                   00113468899999999876 58999999999999999998


Q ss_pred             C---CCcHHHHHHHHHhccccC---CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          528 R---FDSERALAAAMSDLRDRI---LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +   |........ ...+....   ..+.+...++.+.+|+.+||++||.+|||+.++|+||||.+.
T Consensus       218 g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~~  283 (287)
T 2wei_A          218 GTPPFYGKNEYDI-LKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKY  283 (287)
T ss_dssp             SSCSSCCSSHHHH-HHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHHH
T ss_pred             CCCCCCCCCHHHH-HHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcCHHHhcc
Confidence            5   443332222 22222221   223345668899999999999999999999999999999865

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-28  Score=293.55  Aligned_cols=265  Identities=14%  Similarity=0.089  Sum_probs=211.9

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      .-...|.+|+|+|||+++|||+.|++|+  |....          ....+|...|.+|+|+|+ +       .++++.+|
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~----------~~l~gh~~~v~~V~FsPd-g-------~~~~~~~~   72 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA----------KDINCNSKNLFHVKEFPL-E-------FENKLDFE   72 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC----------SCCSSBGGGTEEEEEECC-C-------CCCTTTTS
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--ccccc----------ceecCCCccEEEEEECCC-C-------CcceEEEE
Confidence            3456889999999999999999999999  63321          111478999999999998 4       56666666


Q ss_pred             ECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCC-----ceEEEEEccCCCeEEEE
Q 001366          857 DACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIA-----NVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       857 D~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~-----~V~sl~fsp~~~~~lat  931 (1092)
                      +.... .+..+ .|...|++++|+| ++..||+++.||+|++||...  ++..+.+..     .|.+++|+|+|. +||+
T Consensus        73 ~~~~~-~~~~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~-~LAs  146 (588)
T 2j04_A           73 LAQQN-GLLNS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIES-SIVV  146 (588)
T ss_dssp             CCCSS-CSSTT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSS-CEEE
T ss_pred             eCCCc-eEeec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCC-EEEE
Confidence            54322 22222 5688899999999 999999999999999999654  666666333     499999999995 9999


Q ss_pred             EECCCeEEEEEcCCCCc------ceEEe----cCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEE
Q 001366          932 GSADYRTYCYDLRNARA------PWCVL----AGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLT 1001 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~~------~~~~l----~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~ 1001 (1092)
                      |+.||+|++||+.++..      .+.++    .+|...|.+++|++++ +++++.|++|++||+.....     .....+
T Consensus       147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~-----~~~~~t  220 (588)
T 2j04_A          147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH-----QPVSRM  220 (588)
T ss_dssp             EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS-----CCCEEE
T ss_pred             EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc-----ccceee
Confidence            99999999999998642      24565    7788999999999777 99999999999999984321     112356


Q ss_pred             E-cCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEE--eCCCCEEE
Q 001366         1002 F-SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCW--RRRSDMVV 1078 (1092)
Q Consensus      1002 l-~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~--spd~~~La 1078 (1092)
                      + .+|...|.+++|+  |.+||+++ +++|++|+...++... ..             .+|...|++|+|  +|++..|+
T Consensus       221 L~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~-~~-------------~gh~~~V~~va~~~s~d~~~La  283 (588)
T 2j04_A          221 IQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISS-LK-------------TGSLENFHIIPLNHEKESTILL  283 (588)
T ss_dssp             EECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEE-EE-------------CSCCSCCCEEEETTCSSCEEEE
T ss_pred             ecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEE-EE-------------cCCCceEEEEEeeeCCCCCEEE
Confidence            6 4788999999999  68999998 6999999988765532 21             257889999999  99999999


Q ss_pred             EEecCCeEEEEEc
Q 001366         1079 AANSSGCIKVLQM 1091 (1092)
Q Consensus      1079 sgs~DG~V~vW~l 1091 (1092)
                      +|+.||+ +||.+
T Consensus       284 ~a~edG~-klw~~  295 (588)
T 2j04_A          284 MSNKTSY-KVLLE  295 (588)
T ss_dssp             ECSSCEE-EEEES
T ss_pred             EEcCCCC-EEEee
Confidence            9999999 99975

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.96  E-value=2e-29  Score=280.74  Aligned_cols=242  Identities=15%  Similarity=0.182  Sum_probs=176.3

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhh------HhhhhhhhhhccCCCCCCCccccceecC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDA------ALKAAGAMMVASNASPKPVGVGTAVVSN  284 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (1092)
                      .|.+.+.+  +|.|.||++...    ..+..++.|++.........      ....++..++...+|||++.++......
T Consensus        20 ~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   95 (287)
T 4f0f_A           20 EIEYEKQIGKGGFGLVHKGRLV----KDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP   95 (287)
T ss_dssp             TEEEEEECCCCSSSCEEEEEET----TTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT
T ss_pred             cceehhccccCCceeEEEEEEc----CCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC
Confidence            34444444  478999999762    22455666655332222111      3345566778888999999876543211


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcC--ccccCCCCCCeEE
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQG--VTFLDLKPSSFKL  362 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~g--IvHrDLKP~Nill  362 (1092)
                                        ...+|||++|++|.+++......++...++.++.||+.||+|||++|  |+||||||+||++
T Consensus        96 ------------------~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~  157 (287)
T 4f0f_A           96 ------------------PRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFL  157 (287)
T ss_dssp             ------------------TEEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEE
T ss_pred             ------------------CeEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEE
Confidence                              11389999999999999877778899899999999999999999999  9999999999999


Q ss_pred             ccCCc-----EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCc
Q 001366          363 LQSNQ-----VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNK  437 (1092)
Q Consensus       363 ~~~~~-----vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (1092)
                      +..+.     +|++|||+++....                                                        
T Consensus       158 ~~~~~~~~~~~kl~Dfg~~~~~~~--------------------------------------------------------  181 (287)
T 4f0f_A          158 QSLDENAPVCAKVADFGLSQQSVH--------------------------------------------------------  181 (287)
T ss_dssp             SCCCTTCSCCEEECCCTTCBCCSS--------------------------------------------------------
T ss_pred             eccCCCCceeEEeCCCCccccccc--------------------------------------------------------
Confidence            88776     99999998864320                                                        


Q ss_pred             ccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc--CCCCCccccc
Q 001366          438 IETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS--GGVCTTSSNI  515 (1092)
Q Consensus       438 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~--~~~~t~~sDI  515 (1092)
                                                                        ......||+.|+|||++.  ...++.++||
T Consensus       182 --------------------------------------------------~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di  211 (287)
T 4f0f_A          182 --------------------------------------------------SVSGLLGNFQWMAPETIGAEEESYTEKADT  211 (287)
T ss_dssp             --------------------------------------------------CEECCCCCCTTSCGGGSSCSSCEECHHHHH
T ss_pred             --------------------------------------------------cccccCCCccccCchhhccCCCCcCchhhH
Confidence                                                              011456899999999994  4567999999


Q ss_pred             hhhhHHHHHHcCC---CCcHH--HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          516 YSLGVLFFELFGR---FDSER--ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       516 wSLGvll~ell~~---f~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |||||++|||+++   |....  ..............++.....++.+.+|+.+||++||.+|||+.++++.
T Consensus       212 ~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  283 (287)
T 4f0f_A          212 YSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKE  283 (287)
T ss_dssp             HHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence            9999999999985   33211  1111111222223333344567889999999999999999999999873

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.96  E-value=8.9e-30  Score=290.52  Aligned_cols=252  Identities=16%  Similarity=0.142  Sum_probs=179.9

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCc---cccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNA---FKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  286 (1092)
                      .|.+.+.++  |.|.||++...+.   -...+..++.|+..............++..++... +|||++.++.....+..
T Consensus        36 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~  115 (334)
T 2pvf_A           36 KLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP  115 (334)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSC
T ss_pred             HeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCc
Confidence            444544444  7899999975210   01123445666554333333334445566666666 89999988776543332


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCC---------------CCCHHHHHHHHHHHHHHHHHhhhcCcc
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH---------------KGKRIECLYIFRQIVALVDYHHTQGVT  351 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~---------------~~~~~~~~~i~~qil~~l~~lHs~gIv  351 (1092)
                      .+                ++|||++|++|.++|.....               .++..+++.++.||+.||.|||++||+
T Consensus       116 ~~----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~iv  179 (334)
T 2pvf_A          116 LY----------------VIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCI  179 (334)
T ss_dssp             CE----------------EEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             eE----------------EEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            22                38999999999999976542               377889999999999999999999999


Q ss_pred             ccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccccc
Q 001366          352 FLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFP  431 (1092)
Q Consensus       352 HrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (1092)
                      ||||||+||+++.++.+||+|||+++.......                                               
T Consensus       180 H~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~-----------------------------------------------  212 (334)
T 2pvf_A          180 HRDLAARNVLVTENNVMKIADFGLARDINNIDY-----------------------------------------------  212 (334)
T ss_dssp             CSCCSGGGEEECTTCCEEECCCTTCEECTTTSS-----------------------------------------------
T ss_pred             CCCCccceEEEcCCCCEEEcccccccccccccc-----------------------------------------------
Confidence            999999999999999999999999876441000                                               


Q ss_pred             CccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCc
Q 001366          432 SKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTT  511 (1092)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~  511 (1092)
                                                                            ........+|+.|+|||++.+..++.
T Consensus       213 ------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~  238 (334)
T 2pvf_A          213 ------------------------------------------------------YKKTTNGRLPVKWMAPEALFDRVYTH  238 (334)
T ss_dssp             ------------------------------------------------------EECCSCCCCCGGGCCHHHHHHCEECH
T ss_pred             ------------------------------------------------------ccccCCCCcccceeChHHhcCCCcCh
Confidence                                                                  00001335678899999999888999


Q ss_pred             cccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          512 SSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       512 ~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ++|||||||+||||++ +   |.... .......+.....++.....++.+.+|+.+||+.+|.+||++.+++++
T Consensus       239 ~~Di~slG~il~ellt~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  312 (334)
T 2pvf_A          239 QSDVWSFGVLMWEIFTLGGSPYPGIP-VEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  312 (334)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSSTTCC-HHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcCcCC-HHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            9999999999999998 4   33322 222223333333333444567889999999999999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.6e-28  Score=308.92  Aligned_cols=253  Identities=19%  Similarity=0.288  Sum_probs=213.9

Q ss_pred             eeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECC--CCceEEEeeccCccEEEEEEecCC--CCEEEEEeCCCcEEE
Q 001366          823 VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDAC--TGQTVSHYIEHEKRAWSVDFSQVH--PTKLASGSDDCSVKL  898 (1092)
Q Consensus       823 ~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~--tg~~i~~l~~h~~~V~sv~fsp~~--~~~laSgs~Dg~I~i  898 (1092)
                      ...+|.+.|++++|+|+ +++|++|+.||+|+|||+.  +++.+..+.+|...|++++|+| +  +..|++|+.||+|++
T Consensus         4 ~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            4 IANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ----CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEE
T ss_pred             ecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEE
Confidence            34579999999999998 8899999999999999998  4567888999999999999998 5  889999999999999


Q ss_pred             EecCCCc--eeeeEe-cCCceEEEEEccC--CCeEEEEEECCCeEEEEEcCCCCc-ceEEecCCCCCeEEEEEcC-----
Q 001366          899 WNINEKN--SLATIK-NIANVCCVQFSAH--SSHLLAFGSADYRTYCYDLRNARA-PWCVLAGHEKAVSYVKFLD-----  967 (1092)
Q Consensus       899 WDl~~~~--~l~~l~-~~~~V~sl~fsp~--~~~~latgs~Dg~I~vwDlr~~~~-~~~~l~~H~~~V~~v~fs~-----  967 (1092)
                      ||+.+++  .+..+. +...|.+++|+|+  + .++++|+.||.|++||+++... ....+.+|...|.+++|++     
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            9999886  455554 6789999999999  6 5999999999999999997632 3456778999999999986     


Q ss_pred             ---------CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecC---CCEEEEEecCCcEEEEeC
Q 001366          968 ---------SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTA---DGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus       968 ---------~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd---g~~lasgs~Dg~I~Iwd~ 1035 (1092)
                               +..|++|+.||+|++||++....    ...+...+.+|...|++++|+|+   +.+|++|+.||.|++||.
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~----~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ----TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTT----EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcc----cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence                     67899999999999999985321    23566788899999999999999   899999999999999998


Q ss_pred             CCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1036 SLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1036 ~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ..+.......         ......|...|++++|+|++.+|++|+.||.|+||++
T Consensus       237 ~~~~~~~~~~---------~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          237 DNEQGPWKKT---------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             SSSSSCCBCC---------BSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             CCCCCcceeE---------EeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            7764321111         1122457788999999999999999999999999986

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.96  E-value=1.3e-29  Score=283.56  Aligned_cols=249  Identities=12%  Similarity=0.042  Sum_probs=172.6

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  ++.|.||++...    ..+..++.|+..........   .++...+... .|++++.++.........+  
T Consensus        12 y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~---~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~--   82 (298)
T 1csn_A           12 YKVGRRIGEGSFGVIFEGTNL----LNNQQVAIKFEPRRSDAPQL---RDEYRTYKLLAGCTGIPNVYYFGQEGLHNV--   82 (298)
T ss_dssp             EEEEEEEEECSSCEEEEEEET----TTTEEEEEEEEECCTTSCCH---HHHHHHHHHTTTCTTCCCEEEEEEETTEEE--
T ss_pred             eEEEEEEeecCCEEEEEEEEC----CCCcEEEEEEeccCCccHHH---HHHHHHHHHHhcCCCCCeEEeecCCCceeE--
Confidence            4444444  478999999841    12456666665332222221   2222333333 6788777665543322222  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc---
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ---  367 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~---  367 (1092)
                                    ++|||+ |++|.+++...+..++..+++.|+.||+.||.|||++||+||||||+||+++.++.   
T Consensus        83 --------------lv~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~  147 (298)
T 1csn_A           83 --------------LVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNA  147 (298)
T ss_dssp             --------------EEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTT
T ss_pred             --------------EEEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCC
Confidence                          379999 99999999887777899999999999999999999999999999999999987766   


Q ss_pred             --EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          368 --VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       368 --vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                        +||+|||+++.........                                                           
T Consensus       148 ~~~kl~Dfg~~~~~~~~~~~~-----------------------------------------------------------  168 (298)
T 1csn_A          148 NMIYVVDFGMVKFYRDPVTKQ-----------------------------------------------------------  168 (298)
T ss_dssp             TCEEECCCTTCEESBCTTTCC-----------------------------------------------------------
T ss_pred             CeEEEEECccccccccccccc-----------------------------------------------------------
Confidence              9999999998755211000                                                           


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                                                           ..+........||+.|+|||.+.+..++.++|||||||+||||
T Consensus       169 -------------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el  211 (298)
T 1csn_A          169 -------------------------------------HIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYF  211 (298)
T ss_dssp             -------------------------------------BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------cccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHH
Confidence                                                 0001112256799999999999999999999999999999999


Q ss_pred             cCC---CCcH-----HHHHHHHHhccc-cCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          526 FGR---FDSE-----RALAAAMSDLRD-RILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       526 l~~---f~~~-----~~~~~~~~~~~~-~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      +++   |...     ......+..... ...+......++.+.+|+.+||+.||.+||++.+|++.
T Consensus       212 ~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~  277 (298)
T 1csn_A          212 LRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGL  277 (298)
T ss_dssp             HHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHH
T ss_pred             HcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHH
Confidence            985   4331     111111111111 11112233557889999999999999999999999874

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.96  E-value=9.8e-30  Score=289.19  Aligned_cols=254  Identities=15%  Similarity=0.092  Sum_probs=182.3

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ++.|.||++.....-...+..++.|++... .........++..++...+|||++.++.........    
T Consensus        25 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~----   99 (327)
T 3lxl_A           25 LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS-GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQ----   99 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSC----
T ss_pred             hhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC-CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCc----
Confidence            4444444  478999998732111222455666655332 222233455677778888999999876654321110    


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                         .       ..++|||++|++|.+++......++..+++.|+.||+.||+|||++||+||||||+|||++.++.+||+
T Consensus       100 ---~-------~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~  169 (327)
T 3lxl_A          100 ---S-------LRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIA  169 (327)
T ss_dssp             ---E-------EEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEEC
T ss_pred             ---e-------EEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEc
Confidence               0       113899999999999998755568888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++........                                                                  
T Consensus       170 Dfg~~~~~~~~~~~------------------------------------------------------------------  183 (327)
T 3lxl_A          170 DFGLAKLLPLDKDY------------------------------------------------------------------  183 (327)
T ss_dssp             CGGGCEECCTTCSE------------------------------------------------------------------
T ss_pred             ccccceecccCCcc------------------------------------------------------------------
Confidence            99998765411000                                                                  


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCc
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDS  531 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~  531 (1092)
                                                        ........||+.|+|||++.+..++.++|||||||++|||+++..+
T Consensus       184 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p  229 (327)
T 3lxl_A          184 ----------------------------------YVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDK  229 (327)
T ss_dssp             ----------------------------------EECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCG
T ss_pred             ----------------------------------ceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCC
Confidence                                              0001134678899999999998999999999999999999996322


Q ss_pred             H---HHH--------------HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          532 E---RAL--------------AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       532 ~---~~~--------------~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .   ...              ......+.....++.....++.+.+|+.+||++||.+|||+.+++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          230 SCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQ  297 (327)
T ss_dssp             GGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CccccchhhhhcccccccccHHHHHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            2   111              12222233333344455668889999999999999999999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=1.3e-27  Score=270.21  Aligned_cols=276  Identities=13%  Similarity=0.144  Sum_probs=223.9

Q ss_pred             ccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCC-EEEEEeCCCcEE
Q 001366          728 DRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDED-HFAAAGVSKKIK  804 (1092)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~-~latgg~D~~I~  804 (1092)
                      .|.+.+.++.+    +|++  .+.++.|+.+++|++..........  .+..|...|++++|+|+++ +|++|+.|+.|+
T Consensus         9 ~h~~~v~~~~~----s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            9 APKDYISDIKI----IPSKSLLLITSWDGSLTVYKFDIQAKNVDLL--QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             CCSSCEEEEEE----EGGGTEEEEEETTSEEEEEEEETTTTEEEEE--EEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             CCCCcEEEEEE----cCCCCEEEEEcCCCeEEEEEeCCCCccccce--eeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            45555554433    3333  4577899999999987654111111  2347899999999999999 999999999999


Q ss_pred             EEEc-CCCCCCCcccccceeeec--CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC---------CceEEEeeccCc
Q 001366          805 IFEF-NALFNDSVDVYYPAVEMS--NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT---------GQTVSHYIEHEK  872 (1092)
Q Consensus       805 Iwd~-~~~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t---------g~~i~~l~~h~~  872 (1092)
                      +|++ ....        .....+  |...|.+++|+|  +.+|++++.|++|++||+.+         ++++..+. |..
T Consensus        83 ~wd~~~~~~--------~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~  151 (342)
T 1yfq_A           83 KVDLIGSPS--------FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN  151 (342)
T ss_dssp             EECSSSSSS--------EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC
T ss_pred             EEEeccCCc--------eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC
Confidence            9998 6521        133445  899999999999  78999999999999999987         76666666 889


Q ss_pred             cEEEEEEecCCCCEEEEEeCCCcEEEEecCC-Ccee---eeEecCCceEEEEEcc-CCCeEEEEEECCCeEEEEEcCCC-
Q 001366          873 RAWSVDFSQVHPTKLASGSDDCSVKLWNINE-KNSL---ATIKNIANVCCVQFSA-HSSHLLAFGSADYRTYCYDLRNA-  946 (1092)
Q Consensus       873 ~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~-~~~l---~~l~~~~~V~sl~fsp-~~~~~latgs~Dg~I~vwDlr~~-  946 (1092)
                      .|.+++|+| +.  +++++.|+.|++||+++ +...   ....+...|.+++|+| ++. ++++|+.||.|++||++.. 
T Consensus       152 ~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~  227 (342)
T 1yfq_A          152 KIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             CEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTC
T ss_pred             ceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCC
Confidence            999999998 43  99999999999999998 5542   2223577899999999 885 8999999999999999876 


Q ss_pred             ----CcceEEecCCCC---------CeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCC-CCCeEE
Q 001366          947 ----RAPWCVLAGHEK---------AVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGH-TNEKNF 1011 (1092)
Q Consensus       947 ----~~~~~~l~~H~~---------~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h-~~~V~~ 1011 (1092)
                          ......+.+|..         .|.+++|+ ++.+|++++.||.|++||+.        .+.++..+.+| ...|++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~--------~~~~~~~~~~~h~~~v~~  299 (342)
T 1yfq_A          228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ--------TRKKIKNFAKFNEDSVVK  299 (342)
T ss_dssp             CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT--------TTEEEEECCCCSSSEEEE
T ss_pred             cccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc--------cHhHhhhhhcccCCCceE
Confidence                356677888765         99999999 57789999999999999998        45678889988 999999


Q ss_pred             EEEecCCCEEEEEecCCc-EEEEe
Q 001366         1012 VGLSTADGYIACGSESNE-VYAYH 1034 (1092)
Q Consensus      1012 v~~spdg~~lasgs~Dg~-I~Iwd 1034 (1092)
                      ++  |++.+|++|+.||. .+.|.
T Consensus       300 ~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          300 IA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ec--CCCCeEEEEecCCccccccc
Confidence            99  99999999999998 55554

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.96  E-value=6.2e-30  Score=302.42  Aligned_cols=241  Identities=15%  Similarity=0.114  Sum_probs=163.5

Q ss_pred             ccccce-eeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGI-VCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gv-v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .+|.|. ||++...      +..++.|+......    ....++..++... +||||+.++.....+...+         
T Consensus        34 ~G~~G~V~~~~~~~------~~~vAvK~~~~~~~----~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~---------   94 (432)
T 3p23_A           34 HGAEGTIVYRGMFD------NRDVAVKRILPECF----SFADREVQLLRESDEHPNVIRYFCTEKDRQFQY---------   94 (432)
T ss_dssp             ECGGGCEEEEEESS------SSEEEEEEECTTTE----EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEE---------
T ss_pred             cCcCEEEEEEEEeC------CeEEEEEEECHHHH----HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEE---------
Confidence            346675 5655542      44566655432211    2233455566666 8999999876654333333         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC-----CcEEEec
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS-----NQVKYIG  372 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~-----~~vkl~D  372 (1092)
                             ++||||.| +|.+++..........+++.++.||+.||+|||++||+||||||+||||+..     ..+||+|
T Consensus        95 -------lv~E~~~g-~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~D  166 (432)
T 3p23_A           95 -------IAIELCAA-TLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISD  166 (432)
T ss_dssp             -------EEEECCSE-EHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECC
T ss_pred             -------EEEECCCC-CHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEec
Confidence                   37999975 9999998776555555788999999999999999999999999999999532     3588999


Q ss_pred             ccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCC
Q 001366          373 PIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIP  452 (1092)
Q Consensus       373 fg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  452 (1092)
                      ||+++.+.....                                                                    
T Consensus       167 FG~a~~~~~~~~--------------------------------------------------------------------  178 (432)
T 3p23_A          167 FGLCKKLAVGRH--------------------------------------------------------------------  178 (432)
T ss_dssp             TTEEECC-------------------------------------------------------------------------
T ss_pred             ccceeeccCCCc--------------------------------------------------------------------
Confidence            999977541000                                                                    


Q ss_pred             CCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC---CCCCccccchhhhHHHHHHcC-C
Q 001366          453 HSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG---GVCTTSSNIYSLGVLFFELFG-R  528 (1092)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~---~~~t~~sDIwSLGvll~ell~-~  528 (1092)
                                                      .....+..+||++|+|||++.+   ..++.++|||||||+||||++ +
T Consensus       179 --------------------------------~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g  226 (432)
T 3p23_A          179 --------------------------------SFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEG  226 (432)
T ss_dssp             ---------------------------------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTS
T ss_pred             --------------------------------ceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCC
Confidence                                            0001124679999999999984   567889999999999999998 4


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCC--CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPS--FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                         |....... ..........+..  ....++.+.+||.+||++||.+|||+.++|+||||...
T Consensus       227 ~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp~f~~~  290 (432)
T 3p23_A          227 SHPFGKSLQRQ-ANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFFWSL  290 (432)
T ss_dssp             CBTTBSTTTHH-HHHHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTSTTTCCH
T ss_pred             CCCcchhhHHH-HHHHhccCCccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHhCccccCh
Confidence               32221111 1111111111111  11123457799999999999999999999999999764

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.96  E-value=1.5e-29  Score=285.59  Aligned_cols=252  Identities=14%  Similarity=0.143  Sum_probs=171.7

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCC--CCCCCccccceecCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNA--SPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  288 (1092)
                      |.+.+.+  +|.|.||++...+     +..++.|++....... ......++...+....  +||++.+++....+...+
T Consensus        30 y~~~~~lg~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~  104 (313)
T 3cek_A           30 YSILKQIGSGGSSKVFQVLNEK-----KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY  104 (313)
T ss_dssp             EEEEEEEECCSSEEEEEEECTT-----CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEE
T ss_pred             EEEEEEecCCCCEEEEEEEcCC-----CcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEE
Confidence            4444444  4789999997743     4556666553322222 2233344445555554  589998776655433322


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+|| +.|++|.+++...+ .++..+++.++.||+.||.|||++||+||||||+||+++ ++.+
T Consensus       105 ----------------lv~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~  165 (313)
T 3cek_A          105 ----------------MVME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGML  165 (313)
T ss_dssp             ----------------EEEC-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEE
T ss_pred             ----------------EEEe-cCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeE
Confidence                            2677 78999999998764 577779999999999999999999999999999999995 5899


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.......                                                                
T Consensus       166 kL~Dfg~~~~~~~~~~----------------------------------------------------------------  181 (313)
T 3cek_A          166 KLIDFGIANQMQPDTT----------------------------------------------------------------  181 (313)
T ss_dssp             EECCCSSSCC----------------------------------------------------------------------
T ss_pred             EEeeccccccccCccc----------------------------------------------------------------
Confidence            9999999876441000                                                                


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-----------CCCCccccchh
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-----------GVCTTSSNIYS  517 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-----------~~~t~~sDIwS  517 (1092)
                                                           ........||+.|+|||.+.+           ..++.++||||
T Consensus       182 -------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~s  224 (313)
T 3cek_A          182 -------------------------------------SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS  224 (313)
T ss_dssp             ---------------------------------------------CCGGGCCHHHHTTCC----------CCCHHHHHHH
T ss_pred             -------------------------------------cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHH
Confidence                                                 000114568999999999876           46899999999


Q ss_pred             hhHHHHHHcCC---CCcHHH-HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          518 LGVLFFELFGR---FDSERA-LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       518 LGvll~ell~~---f~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      |||+||||+++   |..... .......+......+.....++.+.+|+.+||++||.+||++.|+|+||||.....
T Consensus       225 lG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~~~~~~~  301 (313)
T 3cek_A          225 LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTH  301 (313)
T ss_dssp             HHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHCC--
T ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcCccccCCCC
Confidence            99999999986   332211 11222222222212222233677899999999999999999999999999987543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.4e-28  Score=274.80  Aligned_cols=265  Identities=11%  Similarity=0.033  Sum_probs=201.8

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECC-------
Q 001366          787 FDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDAC-------  859 (1092)
Q Consensus       787 fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~-------  859 (1092)
                      +.+++.+|++|+.|++|+|||+.....        ..... ...|.++.|+|.    +++++.|++|++|+..       
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~--------~~~~~-~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~  110 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKT--------ITTIT-TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILD  110 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSC--------EEEEE-EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcE--------EEEEe-cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEee
Confidence            446788999999999999999875211        01111 356777888874    9999999999999665       


Q ss_pred             --CCceEEEee-ccCccEEEEEEecC-CCCEEEEEeCCCcEEEEecCCCceeeeEe--cCCceEEEEEccCCCeEEEEEE
Q 001366          860 --TGQTVSHYI-EHEKRAWSVDFSQV-HPTKLASGSDDCSVKLWNINEKNSLATIK--NIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       860 --tg~~i~~l~-~h~~~V~sv~fsp~-~~~~laSgs~Dg~I~iWDl~~~~~l~~l~--~~~~V~sl~fsp~~~~~latgs  933 (1092)
                        +++.+..+. +|...|.+++|+|. ++.++++|+.|++|++||+++++++....  +...|.+++|+|++. +|++|+
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~  189 (343)
T 3lrv_A          111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYS  189 (343)
T ss_dssp             TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEEC
T ss_pred             cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEc
Confidence              555555554 67788999999982 46899999999999999999999876664  455799999999985 999999


Q ss_pred             CCCeEEEEEcCCCCcceEEecC-CCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeE-
Q 001366          934 ADYRTYCYDLRNARAPWCVLAG-HEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN- 1010 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~~-H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~- 1010 (1092)
                      .||.|++||+++++.....+.+ |...|.+++|+ ++.+|++++ |++|++||+++.....     .+..+..|...+. 
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~  263 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL-----AYPTYTIPEFKTGT  263 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB-----SSCCCBC-----CC
T ss_pred             CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce-----eecccccccccccc
Confidence            9999999999998765467777 99999999999 667888888 5599999999643211     1222222434444 


Q ss_pred             -EEEEecCCCEEEEEec-CCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC---CCCEEEEEecCCe
Q 001366         1011 -FVGLSTADGYIACGSE-SNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR---RSDMVVAANSSGC 1085 (1092)
Q Consensus      1011 -~v~~spdg~~lasgs~-Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp---d~~~Lasgs~DG~ 1085 (1092)
                       +++|+|+|.+|++|+. |+.|+||+..........                  ..+..++|.+   +...|++++.||.
T Consensus       264 ~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~~d~~  325 (343)
T 3lrv_A          264 VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------------------DEESALCLQSDTADFTDMDVVCGDGG  325 (343)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------------------EEEEECCC----CCCCEEEEEEETTE
T ss_pred             eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------------------cCceeEecCccccccceeEEEecCCc
Confidence             6999999999999998 999999998655433221                  3467788888   8888888888888


Q ss_pred             EEEE
Q 001366         1086 IKVL 1089 (1092)
Q Consensus      1086 V~vW 1089 (1092)
                      +.++
T Consensus       326 ~~~~  329 (343)
T 3lrv_A          326 IAAI  329 (343)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            8776

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.96  E-value=1.5e-29  Score=286.69  Aligned_cols=246  Identities=16%  Similarity=0.052  Sum_probs=178.3

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||++.....-...+..++.|++.............++..++...+|||++.++.....+....           
T Consensus        41 ~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-----------  109 (318)
T 3lxp_A           41 EGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAAS-----------  109 (318)
T ss_dssp             ECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTE-----------
T ss_pred             CCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCce-----------
Confidence            347899977643221223356677777654333333444566777888889999998776644321110           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                         ..++|||++|++|.+++...  .++..+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++..
T Consensus       110 ---~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~  184 (318)
T 3lxp_A          110 ---LQLVMEYVPLGSLRDYLPRH--SIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAV  184 (318)
T ss_dssp             ---EEEEECCCTTCBHHHHGGGS--CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred             ---EEEEEecccCCcHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccccc
Confidence               01389999999999999766  3788899999999999999999999999999999999999999999999998775


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ......                                                                          
T Consensus       185 ~~~~~~--------------------------------------------------------------------------  190 (318)
T 3lxp_A          185 PEGHEY--------------------------------------------------------------------------  190 (318)
T ss_dssp             CTTCSE--------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            411000                                                                          


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHH---H--
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSER---A--  534 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~---~--  534 (1092)
                                                ........||..|+|||.+.+..++.++|||||||++|||+++..+..   .  
T Consensus       191 --------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~  244 (318)
T 3lxp_A          191 --------------------------YRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKF  244 (318)
T ss_dssp             --------------------------EEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH
T ss_pred             --------------------------cccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhh
Confidence                                      000113457888999999999899999999999999999999632221   1  


Q ss_pred             ------------HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          535 ------------LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       535 ------------~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                                  .......+.....++.....++.+.+|+.+||++||.+|||+.++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~  303 (318)
T 3lxp_A          245 LELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIP  303 (318)
T ss_dssp             HHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hhhhcccccchhHHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                        11122222333334445566789999999999999999999999986

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.96  E-value=5.3e-30  Score=296.18  Aligned_cols=259  Identities=11%  Similarity=0.033  Sum_probs=175.2

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCcc-ccccccccccccccccCchhhHh----------hhhhhhhhccCCCCCCCcccc
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAAL----------KAAGAMMVASNASPKPVGVGT  279 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  279 (1092)
                      .|.+.+.++  |.|.||+|...+.- ...+..++.|+............          .+.+...+...+||||+.++.
T Consensus        36 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~  115 (364)
T 3op5_A           36 AWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWG  115 (364)
T ss_dssp             EEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEE
T ss_pred             eEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEe
Confidence            355555554  78999999664321 11234555655433221111111          111222345668999998777


Q ss_pred             ceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCC
Q 001366          280 AVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSS  359 (1092)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~N  359 (1092)
                      ........     ....       .++|||| |++|.+++...+..++..+++.|+.||+.||+|||++||+||||||+|
T Consensus       116 ~~~~~~~~-----~~~~-------~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~N  182 (364)
T 3op5_A          116 SGLHDKNG-----KSYR-------FMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASN  182 (364)
T ss_dssp             EEEEEETT-----EEEE-------EEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGG
T ss_pred             eeeeccCC-----cceE-------EEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHH
Confidence            65542110     0001       1389999 999999998876778999999999999999999999999999999999


Q ss_pred             eEEc--cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCc
Q 001366          360 FKLL--QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNK  437 (1092)
Q Consensus       360 ill~--~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (1092)
                      |||+  .++.+||+|||+++.+........                                                  
T Consensus       183 ill~~~~~~~~kl~DFG~a~~~~~~~~~~~--------------------------------------------------  212 (364)
T 3op5_A          183 LLLNYKNPDQVYLVDYGLAYRYCPEGVHKA--------------------------------------------------  212 (364)
T ss_dssp             EEEESSCTTCEEECCCTTCEESSGGGCCCC--------------------------------------------------
T ss_pred             EEEecCCCCeEEEEECCcceecccCCcccc--------------------------------------------------
Confidence            9999  889999999999987552110000                                                  


Q ss_pred             ccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchh
Q 001366          438 IETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYS  517 (1092)
Q Consensus       438 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwS  517 (1092)
                                                                    ..........||+.|+|||++.+..++.++||||
T Consensus       213 ----------------------------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s  246 (364)
T 3op5_A          213 ----------------------------------------------YAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEI  246 (364)
T ss_dssp             ----------------------------------------------SSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHH
T ss_pred             ----------------------------------------------cccCcccccCCCCCccCHHHhCCCCCCchhhHHH
Confidence                                                          0001112457999999999999999999999999


Q ss_pred             hhHHHHHHcCC---CCcHHHHHHH---HH--------hccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          518 LGVLFFELFGR---FDSERALAAA---MS--------DLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       518 LGvll~ell~~---f~~~~~~~~~---~~--------~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |||+||||+++   |.........   ..        .+....++  ....++.+.+|+.+||+.+|.+||++.+|++.
T Consensus       247 lG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~  323 (364)
T 3op5_A          247 LGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFP--AANAPGEIAKYMETVKLLDYTEKPLYENLRDI  323 (364)
T ss_dssp             HHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSC--TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcc--cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence            99999999986   4321111111   00        00011111  13447889999999999999999999999873

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.2e-28  Score=286.35  Aligned_cols=293  Identities=9%  Similarity=0.078  Sum_probs=222.9

Q ss_pred             ccCCCCcE--EeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccc
Q 001366          741 IQNPTDRL--GAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDV  818 (1092)
Q Consensus       741 ~~~~~~~l--~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~  818 (1092)
                      .++|++.+  +++.|++++  +....        ..+.+|...|++++|+|+|       .++++.+|+.....      
T Consensus        22 ~~SpDG~~iASas~D~TV~--d~~~~--------~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~------   78 (588)
T 2j04_A           22 TWARDGTLYLTTFPDISIG--QPKYA--------KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG------   78 (588)
T ss_dssp             EECTTSCEEEECSSSEEEE--EECCC--------SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC------
T ss_pred             EECCCCCEEEEEcCCceee--ccccc--------ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce------
Confidence            46788865  567888888  31111        2346899999999999999       56777666643211      


Q ss_pred             ccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCc-----cEEEEEEecCCCCEEEEEeCC
Q 001366          819 YYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEK-----RAWSVDFSQVHPTKLASGSDD  893 (1092)
Q Consensus       819 ~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~-----~V~sv~fsp~~~~~laSgs~D  893 (1092)
                         .....|...|.+++|+|+ +.+||+++.||+|+|||...  ++..+. |..     .|.+++|+| ++.+||+|+.|
T Consensus        79 ---~~~~~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~D  150 (588)
T 2j04_A           79 ---LLNSQPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNED  150 (588)
T ss_dssp             ---SSTTSCSCCEEEEEECSS-SSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETT
T ss_pred             ---EeecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCC
Confidence               112245788999999998 99999999999999999644  777777 765     499999999 99999999999


Q ss_pred             CcEEEEecCCCce-------eeeEe-----cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc--ceEEe-cCCCC
Q 001366          894 CSVKLWNINEKNS-------LATIK-----NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--PWCVL-AGHEK  958 (1092)
Q Consensus       894 g~I~iWDl~~~~~-------l~~l~-----~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~--~~~~l-~~H~~  958 (1092)
                      |+|+|||+.++..       +.++.     |...|.+++|+|+|   +++++.|+.|++||+.+...  ...++ .+|..
T Consensus       151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~  227 (588)
T 2j04_A          151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR  227 (588)
T ss_dssp             SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred             CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence            9999999998753       56664     34589999999987   78899999999999987653  23456 58899


Q ss_pred             CeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEE--ecCCCEEEEEecCCcEEEEeCC
Q 001366          959 AVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGL--STADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       959 ~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~--spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                      .|.+|+|+ ++.|++++ +++|++||+..        ........+|...|+.++|  +|++..|+++++||+ ++|...
T Consensus       228 ~V~svaFs-g~~LASa~-~~tIkLWd~~~--------~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          228 KITDLKIV-DYKVVLTC-PGYVHKIDLKN--------YSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CCCCEEEE-TTEEEEEC-SSEEEEEETTT--------TEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             cEEEEEEE-CCEEEEEe-CCeEEEEECCC--------CeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            99999999 78999887 69999999983        2332233389999999999  999999999999999 999875


Q ss_pred             CCCceeeeec------------cccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec
Q 001366         1037 LPMPITSYKF------------GSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS 1082 (1092)
Q Consensus      1037 ~~~~i~~~~~------------~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~ 1082 (1092)
                      .   +. +.-            .-++........-.+...|++|+|+|||++||+++.
T Consensus       297 ~---~~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          297 E---LH-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             S---EE-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             c---EE-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence            1   22 110            011111111111223456999999999999999874

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.96  E-value=1.9e-29  Score=283.27  Aligned_cols=255  Identities=14%  Similarity=0.116  Sum_probs=180.4

Q ss_pred             HHHhhhc--cccceeeeCCCCCcccccccccccccccccc---CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT---MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      |.+...+  +|.|.||++....    .+..++.|++....   .........++..++...+|||++.+++........ 
T Consensus         7 y~i~~~lg~G~~g~V~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~-   81 (305)
T 2wtk_C            7 YLMGDLLGEGSYGKVKEVLDSE----TLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQ-   81 (305)
T ss_dssp             BCCCCEEEECSSCEEEEEEBTT----TCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC----
T ss_pred             eeEeeEEecCCCeEEEEEEECC----CCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCC-
Confidence            4444444  4789999997632    24455555543221   112234455667778888999999877664321110 


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                            .       ...+|||++|+ |.+++.. ....++..+++.++.||+.||+|||++||+||||||+||+++.++.
T Consensus        82 ------~-------~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~  147 (305)
T 2wtk_C           82 ------K-------MYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGT  147 (305)
T ss_dssp             ------C-------EEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCC
T ss_pred             ------e-------EEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCc
Confidence                  0       11379999987 8888765 3446888899999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +|++|||+++.......                                                               
T Consensus       148 ~kl~dfg~~~~~~~~~~---------------------------------------------------------------  164 (305)
T 2wtk_C          148 LKISALGVAEALHPFAA---------------------------------------------------------------  164 (305)
T ss_dssp             EEECCCTTCEECCTTCS---------------------------------------------------------------
T ss_pred             EEeeccccccccCcccc---------------------------------------------------------------
Confidence            99999998876431000                                                               


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC--CCccccchhhhHHHHHH
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV--CTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~--~t~~sDIwSLGvll~el  525 (1092)
                                                            ........||+.|+|||++.+..  ++.++|||||||++|||
T Consensus       165 --------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l  206 (305)
T 2wtk_C          165 --------------------------------------DDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNI  206 (305)
T ss_dssp             --------------------------------------SCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------ccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHH
Confidence                                                  00011346899999999998744  48899999999999999


Q ss_pred             cCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          526 FGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       526 l~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      +++   |........ +..+.... ++.....++.+.+|+.+||++||.+|||+.++++||||.....
T Consensus       207 ~~g~~p~~~~~~~~~-~~~i~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~  272 (305)
T 2wtk_C          207 TTGLYPFEGDNIYKL-FENIGKGS-YAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHP  272 (305)
T ss_dssp             HHSSCSCCCSSHHHH-HHHHHHCC-CCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSCCC
T ss_pred             HhCCCCCCCchHHHH-HHHHhcCC-CCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcCcccccCCC
Confidence            985   544332222 22222211 1222345788999999999999999999999999999987544

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.96  E-value=1.3e-29  Score=310.09  Aligned_cols=266  Identities=19%  Similarity=0.148  Sum_probs=183.4

Q ss_pred             CCchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          209 SGFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       209 ~~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      ..+..|.+...++  |.|.||++...    ..+..++.|+..............++..++...+||||+.++........
T Consensus        11 ~~~grY~i~~~LG~G~fG~Vyla~~~----~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~   86 (676)
T 3qa8_A           11 QTCGPWEMKERLGTGGFGYVLRWIHQ----DTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQK   86 (676)
T ss_dssp             ------CCCCCCCBCSSSBCCCCCCT----TTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCC
T ss_pred             CCCCCeEEEEEEeeCCCeEEEEEEEC----CCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeeccccc
Confidence            3445677777665  78999999873    23566777766443333334445567778888899999986555321110


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH--KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ  364 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~--~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~  364 (1092)
                      ..   ....       ..++||||+|++|.+++.....  .++..+++.|+.||+.||+|||++||+||||||+||+++.
T Consensus        87 ~~---~~~~-------~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~  156 (676)
T 3qa8_A           87 LA---PNDL-------PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQP  156 (676)
T ss_dssp             CC---TTSS-------CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEEC
T ss_pred             cc---CCCe-------EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeec
Confidence            00   0111       2248999999999999976442  5777799999999999999999999999999999999997


Q ss_pred             CCc---EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          365 SNQ---VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       365 ~~~---vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      ++.   +|++|||+++......                                                          
T Consensus       157 ~g~~~~vKL~DFG~a~~~~~~~----------------------------------------------------------  178 (676)
T 3qa8_A          157 GPQRLIHKIIDLGYAKELDQGE----------------------------------------------------------  178 (676)
T ss_dssp             CSSSCEEEECSCCCCCBTTSCC----------------------------------------------------------
T ss_pred             CCCceeEEEccccccccccccc----------------------------------------------------------
Confidence            765   9999999887643100                                                          


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                                                                    ......||+.|+|||.+.+..++.++|||||||+
T Consensus       179 ----------------------------------------------~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGvi  212 (676)
T 3qa8_A          179 ----------------------------------------------LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTL  212 (676)
T ss_dssp             ----------------------------------------------CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHH
T ss_pred             ----------------------------------------------ccccccCCcccCChHHhccCCCCchhHHHHHHHH
Confidence                                                          0114578999999999999999999999999999


Q ss_pred             HHHHcCC---CCcHHHHHHHHHhcc--------------cc-----CC--CCCCC-CCChhHHHHHHhccccCCCCCCCH
Q 001366          522 FFELFGR---FDSERALAAAMSDLR--------------DR-----IL--PPSFL-SENPKEAGFCLWQLHPEPLSRPTT  576 (1092)
Q Consensus       522 l~ell~~---f~~~~~~~~~~~~~~--------------~~-----~~--p~~~~-~~~~~~~~li~~lL~~dP~~Rpsa  576 (1092)
                      ||||+++   |.+......+...+.              ..     .+  |..+. ..++.+.+|+.+||.+||.+|||+
T Consensus       213 LyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa  292 (676)
T 3qa8_A          213 AFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTD  292 (676)
T ss_dssp             HHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CC
T ss_pred             HHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCH
Confidence            9999986   433222222111110              00     00  11111 134668899999999999999999


Q ss_pred             HHHhhhhhhhhhhccc
Q 001366          577 REILQSEVTNEFQEVC  592 (1092)
Q Consensus       577 ~eiL~~~~~~~~~~~~  592 (1092)
                      .++|+||||.+.....
T Consensus       293 ~elL~hp~F~~l~~iL  308 (676)
T 3qa8_A          293 PQNPNVGCFQALDSIL  308 (676)
T ss_dssp             TTCCCCTTHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHH
Confidence            9999999998865443

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.96  E-value=6.1e-30  Score=290.10  Aligned_cols=241  Identities=18%  Similarity=0.103  Sum_probs=172.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||+|...+     +..++.|+...... .......++...+...+|||++.++.....+...+           
T Consensus        49 ~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~-----------  111 (321)
T 2qkw_B           49 HGVFGKVYKGVLRD-----GAKVALKRRTPESS-QGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI-----------  111 (321)
T ss_dssp             BCSSSEEEEEECTT-----CCEEEEEECCSCCS-SHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCE-----------
T ss_pred             cCCCeeEEEEEECC-----CCEEEEEEecccCh-HHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE-----------
Confidence            34789999998643     45556665433222 22334456677788889999998776543322222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARG---HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~---~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                           .+|||++|++|.+++....   ..++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|||++
T Consensus       112 -----lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  186 (321)
T 2qkw_B          112 -----LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGIS  186 (321)
T ss_dssp             -----EEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTC
T ss_pred             -----EEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeecccc
Confidence                 3899999999999996543   24788899999999999999999999999999999999999999999999998


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.......                                                                        
T Consensus       187 ~~~~~~~~------------------------------------------------------------------------  194 (321)
T 2qkw_B          187 KKGTELDQ------------------------------------------------------------------------  194 (321)
T ss_dssp             EECSSSSC------------------------------------------------------------------------
T ss_pred             cccccccc------------------------------------------------------------------------
Confidence            76331000                                                                        


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                   ........||+.|+|||++.+..++.++|||||||+||||+++   |....
T Consensus       195 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~  245 (321)
T 2qkw_B          195 -----------------------------THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSL  245 (321)
T ss_dssp             -----------------------------CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSS
T ss_pred             -----------------------------cccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccC
Confidence                                         0001145689999999999999999999999999999999986   32210


Q ss_pred             -----HHHHH--HHhcc---ccCCCCCCC-----CCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          534 -----ALAAA--MSDLR---DRILPPSFL-----SENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       534 -----~~~~~--~~~~~---~~~~p~~~~-----~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                           ....+  .....   .....+...     ...+.+.+|+.+||++||.+|||+.|++++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  310 (321)
T 2qkw_B          246 PREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL  310 (321)
T ss_dssp             SSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             cHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence                 00000  00000   111111111     1234578999999999999999999999875

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.96  E-value=1.1e-29  Score=282.95  Aligned_cols=252  Identities=12%  Similarity=0.022  Sum_probs=176.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.++  |.|.||+|........ ...++.|++....  .........++...+...+|||++.++.....+. . 
T Consensus        19 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~-   95 (291)
T 1u46_A           19 DLRLLEKLGDGSFGVVRRGEWDAPSGK-TVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M-   95 (291)
T ss_dssp             GEEEEEECC----CCCEEEEEECTTSC-EEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C-
T ss_pred             HeeeeeeecCCCceeEEEEEeccCCCc-eeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c-
Confidence            455554444  6899999874211000 1234445443221  1222334456666777889999998776644221 1 


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                     ..+|+|+.|++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+
T Consensus        96 ---------------~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~  160 (291)
T 1u46_A           96 ---------------KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLV  160 (291)
T ss_dssp             ---------------EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEE
T ss_pred             ---------------eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCE
Confidence                           13799999999999998765568888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||+++........                                                               
T Consensus       161 kl~Dfg~~~~~~~~~~~---------------------------------------------------------------  177 (291)
T 1u46_A          161 KIGDFGLMRALPQNDDH---------------------------------------------------------------  177 (291)
T ss_dssp             EECCCTTCEECCC-CCE---------------------------------------------------------------
T ss_pred             EEccccccccccccccc---------------------------------------------------------------
Confidence            99999998765411000                                                               


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-  527 (1092)
                                                           ........+|..|+|||++.+..++.++|||||||++|||++ 
T Consensus       178 -------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~  220 (291)
T 1u46_A          178 -------------------------------------YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTY  220 (291)
T ss_dssp             -------------------------------------EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTT
T ss_pred             -------------------------------------hhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhC
Confidence                                                 000013457788999999998889999999999999999998 


Q ss_pred             C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          528 R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      +   |..................++.....++.+.+|+.+||++||.+|||+.+++++
T Consensus       221 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  278 (291)
T 1u46_A          221 GQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDF  278 (291)
T ss_dssp             SCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHccCCCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence            5   433333333333333333344445667889999999999999999999999974

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.96  E-value=1.8e-29  Score=285.31  Aligned_cols=248  Identities=16%  Similarity=0.073  Sum_probs=172.2

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccc-cCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTT-TMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      +|.+...++  |.|.||+|...+       .++.|++... ..........++..++...+|||++.++.........+ 
T Consensus        34 ~~~~~~~lg~G~~g~V~~~~~~~-------~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~-  105 (319)
T 2y4i_B           34 QLEIGELIGKGRFGQVYHGRWHG-------EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLA-  105 (319)
T ss_dssp             CEECCCBCCCSSSSEEEEEEESS-------SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEE-
T ss_pred             HeEEeeEeccCCceEEEEEEEcC-------eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceE-
Confidence            344444443  679999997632       2344443221 11222233445666778889999998777655333222 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     ++|||++|++|.+++...+..++..+++.++.||+.||.|||++||+||||||+||+++ ++.+|
T Consensus       106 ---------------iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~  169 (319)
T 2y4i_B          106 ---------------IITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVV  169 (319)
T ss_dssp             ---------------EECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCE
T ss_pred             ---------------EEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEE
Confidence                           38999999999999988776788889999999999999999999999999999999997 78999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++........                                                                
T Consensus       170 l~Dfg~~~~~~~~~~~----------------------------------------------------------------  185 (319)
T 2y4i_B          170 ITDFGLFSISGVLQAG----------------------------------------------------------------  185 (319)
T ss_dssp             ECCCSCCC------------------------------------------------------------------------
T ss_pred             EeecCCcccccccccc----------------------------------------------------------------
Confidence            9999988654310000                                                                


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC---------CCCCccccchhhhH
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG---------GVCTTSSNIYSLGV  520 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~---------~~~t~~sDIwSLGv  520 (1092)
                                                        ..........||+.|+|||.+.+         ..++.++|||||||
T Consensus       186 ----------------------------------~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~  231 (319)
T 2y4i_B          186 ----------------------------------RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGT  231 (319)
T ss_dssp             ------------------------------------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHH
T ss_pred             ----------------------------------ccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHH
Confidence                                              00011124568999999999875         45799999999999


Q ss_pred             HHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          521 LFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       521 ll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ++|||+++   |..................+......++.+.+|+.+||++||.+|||+.++++.
T Consensus       232 il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~  296 (319)
T 2y4i_B          232 IWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDM  296 (319)
T ss_dssp             HHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHH
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence            99999986   443333222222222222222223457889999999999999999999999873

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.96  E-value=4.3e-30  Score=294.72  Aligned_cols=258  Identities=15%  Similarity=0.076  Sum_probs=173.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhH----------hhhhhhhhhccCCCCCCCccccc
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAA----------LKAAGAMMVASNASPKPVGVGTA  280 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  280 (1092)
                      .|.+.+.++  |.|.||++..... ...+..++.|+...........          ...++...+....|||++.++..
T Consensus        38 ~y~~~~~lg~G~~g~Vy~~~~~~~-~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           38 QWVLGKKIGSGGFGLIYLAFPTNK-PEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             EEEEEEEC------CEEEEEESSS-CGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             eEEEEeeEeecCCeEEEEEEecCC-CCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            355555554  7899999987421 1123444555443322111111          12233445667799999988776


Q ss_pred             eecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCe
Q 001366          281 VVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSF  360 (1092)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Ni  360 (1092)
                      .......     ....       .++|||+ |++|.+++...+ .++..+++.|+.||+.||+|||++||+||||||+||
T Consensus       117 ~~~~~~~-----~~~~-------~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NI  182 (345)
T 2v62_A          117 GLTEFKG-----RSYR-------FMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANL  182 (345)
T ss_dssp             EEEESSS-----CEEE-------EEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGE
T ss_pred             cccccCC-----CcEE-------EEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHE
Confidence            5541100     0001       1389999 999999997765 678889999999999999999999999999999999


Q ss_pred             EEccCC--cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcc
Q 001366          361 KLLQSN--QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKI  438 (1092)
Q Consensus       361 ll~~~~--~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (1092)
                      |++.++  .+||+|||+++.+.......                                                    
T Consensus       183 ll~~~~~~~~kL~Dfg~a~~~~~~~~~~----------------------------------------------------  210 (345)
T 2v62_A          183 LLGYKNPDQVYLADYGLSYRYCPNGNHK----------------------------------------------------  210 (345)
T ss_dssp             EEESSSTTSEEECCCTTCEESSGGGCCC----------------------------------------------------
T ss_pred             EEccCCCCcEEEEeCCCceecccccccc----------------------------------------------------
Confidence            999887  99999999998755211000                                                    


Q ss_pred             cccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhh
Q 001366          439 ETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSL  518 (1092)
Q Consensus       439 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSL  518 (1092)
                                                                  ...........||+.|+|||++.+..++.++|||||
T Consensus       211 --------------------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~sl  246 (345)
T 2v62_A          211 --------------------------------------------QYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEIL  246 (345)
T ss_dssp             --------------------------------------------CCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHH
T ss_pred             --------------------------------------------cchhccccccCCCccccCHHHhcCCCCCchhhHHHH
Confidence                                                        000011125679999999999999999999999999


Q ss_pred             hHHHHHHcCC---CCcH----HHHHHHHHhccccCCCCC------CCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          519 GVLFFELFGR---FDSE----RALAAAMSDLRDRILPPS------FLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       519 Gvll~ell~~---f~~~----~~~~~~~~~~~~~~~p~~------~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||+||||+++   |...    ............ .+|+.      ....++.+.+|+.+||.+||.+||++.+|++.
T Consensus       247 G~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  322 (345)
T 2v62_A          247 GYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLD-ELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKI  322 (345)
T ss_dssp             HHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHH-TTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCccccccccHHHHHHHHhhcc-cccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHH
Confidence            9999999986   4221    111111111111 12211      11557889999999999999999999999874

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.96  E-value=2.4e-29  Score=310.13  Aligned_cols=243  Identities=14%  Similarity=0.056  Sum_probs=178.0

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..++.|.||+|....  ...+..++.|+..............++..++...+||||+.++.....+. .+          
T Consensus       345 G~G~fG~Vy~~~~~~--~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~-~~----------  411 (613)
T 2ozo_A          345 GCGNFGSVRQGVYRM--RKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEA-LM----------  411 (613)
T ss_dssp             EECSSSEEEEEEEEC--SSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSS-EE----------
T ss_pred             ecCCCcEEEEEEEec--CCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCC-eE----------
Confidence            556899999996521  11134456666544333334455667788888999999998876643221 11          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            ++||||+||+|.++|......++..+++.|+.||+.||+|||++||+||||||+||||+.++.+||+|||+++.
T Consensus       412 ------lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~  485 (613)
T 2ozo_A          412 ------LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKA  485 (613)
T ss_dssp             ------EEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTT
T ss_pred             ------EEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCccc
Confidence                  38999999999999987767788989999999999999999999999999999999999999999999999987


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +......                                                                         
T Consensus       486 ~~~~~~~-------------------------------------------------------------------------  492 (613)
T 2ozo_A          486 LGADDSY-------------------------------------------------------------------------  492 (613)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCCCce-------------------------------------------------------------------------
Confidence            5411000                                                                         


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~  534 (1092)
                                                 ........+|..|+|||++.+..++.++|||||||+||||++ +   |.....
T Consensus       493 ---------------------------~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~  545 (613)
T 2ozo_A          493 ---------------------------YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG  545 (613)
T ss_dssp             ------------------------------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS
T ss_pred             ---------------------------eeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH
Confidence                                       000012345678999999998999999999999999999997 5   433222


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      .. .+..+.....++.....++.+.+|+.+||+.+|.+||++.+|++
T Consensus       546 ~~-~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~  591 (613)
T 2ozo_A          546 PE-VMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQ  591 (613)
T ss_dssp             HH-HHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHH
T ss_pred             HH-HHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            22 22222222223333456789999999999999999999999865

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.96  E-value=1.6e-29  Score=281.55  Aligned_cols=238  Identities=16%  Similarity=0.096  Sum_probs=176.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .+|.|.||++...    ..+..++.|++...  ........++..++...+|||++.++.....+...+           
T Consensus        23 ~G~~g~V~~~~~~----~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~-----------   85 (288)
T 3kfa_A           23 GGQYGEVYEGVWK----KYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY-----------   85 (288)
T ss_dssp             GGTTCSEEEEEEG----GGTEEEEEEEECSC--STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEE-----------
T ss_pred             CCCceeEEEeEec----CCCEEEEEEecCcC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEE-----------
Confidence            3478999999863    23445566555322  223344456677788889999998777644332222           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .+|||++|++|.+++.... ..++..+++.++.||+.||+|||++||+||||||+||+++.++.+|++|||+++.
T Consensus        86 -----~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~  160 (288)
T 3kfa_A           86 -----IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRL  160 (288)
T ss_dssp             -----EEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGT
T ss_pred             -----EEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCcccee
Confidence                 3899999999999997643 4588889999999999999999999999999999999999999999999999876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       161 ~~~~~---------------------------------------------------------------------------  165 (288)
T 3kfa_A          161 MTGDT---------------------------------------------------------------------------  165 (288)
T ss_dssp             SCSSS---------------------------------------------------------------------------
T ss_pred             ccCCc---------------------------------------------------------------------------
Confidence            43100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~~  534 (1092)
                                                 ........+|+.|+|||.+.+..++.++|||||||++|+|++ +   |.... 
T Consensus       166 ---------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~-  217 (288)
T 3kfa_A          166 ---------------------------YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID-  217 (288)
T ss_dssp             ---------------------------SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-
T ss_pred             ---------------------------cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC-
Confidence                                       000113456788999999999999999999999999999998 5   32211 


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .......+.....++.....++.+.+|+.+||++||.+|||+.++++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~  265 (288)
T 3kfa_A          218 LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQA  265 (288)
T ss_dssp             GGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHH
Confidence            111222222222333344567889999999999999999999999873

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.96  E-value=7.3e-30  Score=292.45  Aligned_cols=247  Identities=14%  Similarity=0.117  Sum_probs=165.5

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCC------CCccccceecC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPK------PVGVGTAVVSN  284 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  284 (1092)
                      .|.+.+.++  +.|.||++....  .. +..++.|++...  ........++...+...+|++      ++.+.+.....
T Consensus        20 ~y~~~~~lg~G~~g~V~~~~~~~--~~-~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~   94 (355)
T 2eu9_A           20 RYEIVGNLGEGTFGKVVECLDHA--RG-KSQVALKIIRNV--GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFH   94 (355)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETT--TT-TEEEEEEEECSC--HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEET
T ss_pred             cEEEEEEeeccCCeEEEEEEecC--CC-ceEEEEEEEccc--ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeC
Confidence            355555554  789999997521  00 235566665321  112222333444444444443      33222222211


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE-
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL-  362 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill-  362 (1092)
                      ..                ..++|||+ +++|.+++.... ..++..+++.|+.||+.||+|||++||+||||||+|||+ 
T Consensus        95 ~~----------------~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~  157 (355)
T 2eu9_A           95 GH----------------MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFV  157 (355)
T ss_dssp             TE----------------EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEES
T ss_pred             Ce----------------EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEe
Confidence            11                12479999 667777775543 568888999999999999999999999999999999999 


Q ss_pred             ------------------ccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccc
Q 001366          363 ------------------LQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFS  424 (1092)
Q Consensus       363 ------------------~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (1092)
                                        +..+.+||+|||+++....                                           
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~-------------------------------------------  194 (355)
T 2eu9_A          158 NSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHE-------------------------------------------  194 (355)
T ss_dssp             CCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTS-------------------------------------------
T ss_pred             cccccccccccccccccccCCCcEEEeecCccccccc-------------------------------------------
Confidence                              5677899999988765220                                           


Q ss_pred             cccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccc
Q 001366          425 RWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEEL  504 (1092)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l  504 (1092)
                                                                                     ......||+.|+|||++
T Consensus       195 ---------------------------------------------------------------~~~~~~gt~~y~aPE~~  211 (355)
T 2eu9_A          195 ---------------------------------------------------------------HHTTIVATRHYRPPEVI  211 (355)
T ss_dssp             ---------------------------------------------------------------CCCSSCSCGGGCCHHHH
T ss_pred             ---------------------------------------------------------------cccCCcCCCcccCCeee
Confidence                                                                           00135689999999999


Q ss_pred             cCCCCCccccchhhhHHHHHHcCC---CCcHHHH--HHHHHhccccCCCC------------------------------
Q 001366          505 SGGVCTTSSNIYSLGVLFFELFGR---FDSERAL--AAAMSDLRDRILPP------------------------------  549 (1092)
Q Consensus       505 ~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~--~~~~~~~~~~~~p~------------------------------  549 (1092)
                      .+..++.++|||||||+||||+++   |......  ...+..... .+|.                              
T Consensus       212 ~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
T 2eu9_A          212 LELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILG-PIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVK  290 (355)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC-CCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHH
T ss_pred             ecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcC-CCcHHHhhhccchhhhcccccccccccchhcccc
Confidence            999999999999999999999986   4433222  122222111 1110                              


Q ss_pred             -----------CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          550 -----------SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       550 -----------~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                                 .....++.+.+|+.+||++||.+|||+.|+|+||||...
T Consensus       291 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  340 (355)
T 2eu9_A          291 ENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGL  340 (355)
T ss_dssp             HHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGC
T ss_pred             ccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcChhhcCC
Confidence                       001113467899999999999999999999999999875

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.96  E-value=2.5e-29  Score=283.54  Aligned_cols=240  Identities=17%  Similarity=0.208  Sum_probs=173.4

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      .+.+|.+.+.++  |.|.||++...      +..++.|+...   ........++...+...+|||++.++.... + . 
T Consensus         6 ~~~~~~~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-~-~-   73 (307)
T 2eva_A            6 DYKEIEVEEVVGRGAFGVVCKAKWR------AKDVAIKQIES---ESERKAFIVELRQLSRVNHPNIVKLYGACL-N-P-   73 (307)
T ss_dssp             CGGGEEEEEEEECCSSSEEEEEEET------TEEEEEEECSS---TTHHHHHHHHHHHHHHCCCTTBCCEEEBCT-T-T-
T ss_pred             CHhHeeeeeEeecCCCceEEEEEEC------CeeEEEEEecC---hhHHHHHHHHHHHHhcCCCCCcCeEEEEEc-C-C-
Confidence            344555555544  78999999763      23455555422   122334455667788889999998765422 1 1 


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHhhh---cCccccCCCCCCeEE
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH--KGKRIECLYIFRQIVALVDYHHT---QGVTFLDLKPSSFKL  362 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~--~~~~~~~~~i~~qil~~l~~lHs---~gIvHrDLKP~Nill  362 (1092)
                                     ..++|||++|++|.+++.....  .++..+++.++.||+.||+|||+   +||+||||||+||++
T Consensus        74 ---------------~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll  138 (307)
T 2eva_A           74 ---------------VCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLL  138 (307)
T ss_dssp             ---------------TEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEE
T ss_pred             ---------------cEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEE
Confidence                           1138999999999999976543  36777899999999999999999   899999999999999


Q ss_pred             ccCCc-EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          363 LQSNQ-VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       363 ~~~~~-vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      +.++. +|++|||+++.....                                                           
T Consensus       139 ~~~~~~~kl~Dfg~~~~~~~~-----------------------------------------------------------  159 (307)
T 2eva_A          139 VAGGTVLKICDFGTACDIQTH-----------------------------------------------------------  159 (307)
T ss_dssp             ETTTTEEEECCCCC------------------------------------------------------------------
T ss_pred             eCCCCEEEEcccccccccccc-----------------------------------------------------------
Confidence            98886 799999988653310                                                           


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                                                                     .....||+.|+|||++.+..++.++|||||||+
T Consensus       160 -----------------------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~i  192 (307)
T 2eva_A          160 -----------------------------------------------MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGII  192 (307)
T ss_dssp             ----------------------------------------------------CCTTSSCHHHHTCCCCCTHHHHHHHHHH
T ss_pred             -----------------------------------------------cccCCCCCceEChhhhCCCCCCcHHHHHHHHHH
Confidence                                                           013358999999999999999999999999999


Q ss_pred             HHHHcCC---CCcH-HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          522 FFELFGR---FDSE-RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       522 l~ell~~---f~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      +|||+++   |... ......+........++.....++.+.+|+.+||+.||.+|||+.+++++
T Consensus       193 l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  257 (307)
T 2eva_A          193 LWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKI  257 (307)
T ss_dssp             HHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHCCCCchhhCccHHHHHHHHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence            9999986   3321 11222222333334455555678889999999999999999999999884

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.96  E-value=1.8e-29  Score=300.75  Aligned_cols=243  Identities=15%  Similarity=0.106  Sum_probs=178.2

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.+  ++.|.||+|...+     +..++.|+.....  .......++..++...+|||++.++.... +...+  
T Consensus       189 ~~~~~~~lG~G~fg~V~~~~~~~-----~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~--  258 (454)
T 1qcf_A          189 SLKLEKKLGAGQFGEVWMATYNK-----HTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIY--  258 (454)
T ss_dssp             GEEEEEEEECCSSEEEEEEEETT-----TEEEEEEEECTTS--BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCE--
T ss_pred             HeEEEEEcccCCceEEEEEEECC-----ccEEEEEEecCCC--ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccE--
Confidence            34444444  4789999998743     3445655543222  23344556777888899999998765432 11111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                    ++|||+.||+|.++|+.. +..++..+++.++.||+.||+|||++||+||||||+||||+.++.+|
T Consensus       259 --------------lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~k  324 (454)
T 1qcf_A          259 --------------IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCK  324 (454)
T ss_dssp             --------------EEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEE
T ss_pred             --------------EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEE
Confidence                          389999999999999754 23577778999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++.......                                                                 
T Consensus       325 l~DFG~a~~~~~~~~-----------------------------------------------------------------  339 (454)
T 1qcf_A          325 IADFGLARVIEDNEY-----------------------------------------------------------------  339 (454)
T ss_dssp             ECSTTGGGGBCCHHH-----------------------------------------------------------------
T ss_pred             EeeCCCceEcCCCce-----------------------------------------------------------------
Confidence            999999976441000                                                                 


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~  528 (1092)
                                                           .......+|..|+|||++.+..++.++|||||||+||||++ +
T Consensus       340 -------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g  382 (454)
T 1qcf_A          340 -------------------------------------TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYG  382 (454)
T ss_dssp             -------------------------------------HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred             -------------------------------------eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCC
Confidence                                                 00012345678999999998899999999999999999998 4


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                         |........ +..+.....++.....++.+.+|+.+||++||.+|||+.+|+..
T Consensus       383 ~~P~~~~~~~~~-~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~  438 (454)
T 1qcf_A          383 RIPYPGMSNPEV-IRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSV  438 (454)
T ss_dssp             CCSSTTCCHHHH-HHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCCHHHH-HHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence               443322222 22222223333344567889999999999999999999999863

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.96  E-value=7.1e-30  Score=289.71  Aligned_cols=243  Identities=16%  Similarity=0.185  Sum_probs=174.2

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCch-----hhHhhhhhhhhhccC--CCCCCCccccceec
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-----DAALKAAGAMMVASN--ASPKPVGVGTAVVS  283 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  283 (1092)
                      +|.+.+.++  |.|.||+|...    ..+..++.|++.......     ......++..++...  .|||++.+++....
T Consensus        44 ~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~  119 (320)
T 3a99_A           44 QYQVGPLLGSGGFGSVYSGIRV----SDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER  119 (320)
T ss_dssp             TEEEEEECSSSSSCEEEEEEET----TTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred             ceEEEEEEeeCCCeEEEEEEEC----CCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence            355554444  78999999642    124555665543222111     111222333344444  46999987766543


Q ss_pred             CCCCCCCccCCCCCccccCCCcccccCCC-CCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE
Q 001366          284 NGSLDLGARTGVPASCWIGGLRQGSSDHG-VNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL  362 (1092)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-gsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill  362 (1092)
                      ....+                .+|+++.+ ++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+|||+
T Consensus       120 ~~~~~----------------lv~e~~~~~~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll  182 (320)
T 3a99_A          120 PDSFV----------------LILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILI  182 (320)
T ss_dssp             SSEEE----------------EEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEE
T ss_pred             CCcEE----------------EEEEcCCCCccHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEE
Confidence            33222                37899876 99999998754 47777999999999999999999999999999999999


Q ss_pred             c-cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          363 L-QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       363 ~-~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      + ..+.+||+|||+++.....                                                           
T Consensus       183 ~~~~~~~kL~Dfg~~~~~~~~-----------------------------------------------------------  203 (320)
T 3a99_A          183 DLNRGELKLIDFGSGALLKDT-----------------------------------------------------------  203 (320)
T ss_dssp             ETTTTEEEECCCTTCEECCSS-----------------------------------------------------------
T ss_pred             eCCCCCEEEeeCccccccccc-----------------------------------------------------------
Confidence            9 6799999999988764310                                                           


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGV  520 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGv  520 (1092)
                                                                    ......||+.|+|||++.+..+ +.++|||||||
T Consensus       204 ----------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~  237 (320)
T 3a99_A          204 ----------------------------------------------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGI  237 (320)
T ss_dssp             ----------------------------------------------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHH
T ss_pred             ----------------------------------------------cccCCCCCccCCChHHhccCCCCCccchHHhHHH
Confidence                                                          0113468999999999987665 78999999999


Q ss_pred             HHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          521 LFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       521 ll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      +||||+++   |.....   ...   ....  .....++.+.+|+.+||+.||.+|||+.+|++||||.+..
T Consensus       238 il~el~~g~~pf~~~~~---~~~---~~~~--~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~  301 (320)
T 3a99_A          238 LLYDMVCGDIPFEHDEE---IIR---GQVF--FRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVL  301 (320)
T ss_dssp             HHHHHHHSSCSCCSHHH---HHH---CCCC--CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCC
T ss_pred             HHHHHHHCCCCCCChhh---hhc---cccc--ccccCCHHHHHHHHHHccCChhhCcCHHHHhcCHhhcCcc
Confidence            99999986   443322   111   1111  1234578899999999999999999999999999998753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.9e-28  Score=304.53  Aligned_cols=255  Identities=20%  Similarity=0.231  Sum_probs=211.5

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCC-CCEEEEEECCCc
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI-KNYLASADYDGV  852 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~LaSgs~Dgt  852 (1092)
                      .+.+|.+.|++++|+|++++|++|+.||+|+||++...     .........+|...|.+++|+++. +++|++|+.||+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-----~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-----EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-----CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            35689999999999999999999999999999998631     122233456799999999998753 789999999999


Q ss_pred             EEEEECCCCc--eEEEeeccCccEEEEEEecCC--CCEEEEEeCCCcEEEEecCCCceee--eE-ecCCceEEEEEccC-
Q 001366          853 VKLWDACTGQ--TVSHYIEHEKRAWSVDFSQVH--PTKLASGSDDCSVKLWNINEKNSLA--TI-KNIANVCCVQFSAH-  924 (1092)
Q Consensus       853 V~IWD~~tg~--~i~~l~~h~~~V~sv~fsp~~--~~~laSgs~Dg~I~iWDl~~~~~l~--~l-~~~~~V~sl~fsp~-  924 (1092)
                      |++||+.+++  .+..+.+|...|++++|+| +  +..+++|+.||+|++||++++....  .+ .+...|.+++|+|. 
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            9999999987  7778889999999999999 6  8999999999999999999874332  23 36788999999994 


Q ss_pred             ------------CCeEEEEEECCCeEEEEEcCCCC---cceEEecCCCCCeEEEEEcC----CCEEEEEECCCeEEEEEc
Q 001366          925 ------------SSHLLAFGSADYRTYCYDLRNAR---APWCVLAGHEKAVSYVKFLD----SGTLVTASTDNKLKLWDL  985 (1092)
Q Consensus       925 ------------~~~~latgs~Dg~I~vwDlr~~~---~~~~~l~~H~~~V~~v~fs~----~~~L~Sgs~Dg~I~vWDl  985 (1092)
                                  + .++++|+.||.|++||+++..   .....+.+|...|.+++|++    +.+|++|+.||+|++||+
T Consensus       158 ~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          158 IEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             ---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             cccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence                        5 589999999999999999765   34567789999999999994    578999999999999999


Q ss_pred             CCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCC
Q 001366          986 KRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLP 1038 (1092)
Q Consensus       986 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~ 1038 (1092)
                      ++....   ..........|...|++++|+|+|.+|++|+.||.|++|++..+
T Consensus       237 ~~~~~~---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          237 DNEQGP---WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             SSSSSC---CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             CCCCCc---ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            854321   11123344568889999999999999999999999999998753

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.96  E-value=2e-29  Score=303.44  Aligned_cols=245  Identities=16%  Similarity=0.111  Sum_probs=180.7

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.+.+.+  ++.|.||+|...+    .+..++.|+......  ......++..++...+||||+.++.....+...+  
T Consensus       221 ~~~~~~~lG~G~fg~Vy~~~~~~----~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~--  292 (495)
T 1opk_A          221 DITMKHKLGGGQYGEVYEGVWKK----YSLTVAVKTLKEDTM--EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY--  292 (495)
T ss_dssp             GEEEEEESGGGTTSSEEEEEEGG----GTEEEEEEECCSSSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE--
T ss_pred             HceeeeEecCCCCeEEEEEEEcC----CCeEEEEEEecCccc--chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEE--
Confidence            45555444  4789999998632    244566665533222  2344556777888889999998877654333333  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                    ++|||++||+|.++|+.. ...++...++.|+.||+.||+|||++||+||||||+||||+.++.+|
T Consensus       293 --------------lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~k  358 (495)
T 1opk_A          293 --------------IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVK  358 (495)
T ss_dssp             --------------EEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEE
T ss_pred             --------------EEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEE
Confidence                          389999999999999764 34588889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++.......                                                                 
T Consensus       359 l~DFG~a~~~~~~~~-----------------------------------------------------------------  373 (495)
T 1opk_A          359 VADFGLSRLMTGDTY-----------------------------------------------------------------  373 (495)
T ss_dssp             ECCTTCEECCTTCCE-----------------------------------------------------------------
T ss_pred             EeecccceeccCCce-----------------------------------------------------------------
Confidence            999999876431000                                                                 


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~  528 (1092)
                                                           .......++..|+|||++.+..++.++|||||||+||||++ +
T Consensus       374 -------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g  416 (495)
T 1opk_A          374 -------------------------------------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG  416 (495)
T ss_dssp             -------------------------------------ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTS
T ss_pred             -------------------------------------eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCC
Confidence                                                 00012345678999999999899999999999999999998 4


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                         |..... ......+.....++.....++.+.+|+.+||+.||.+|||+.+|++.
T Consensus       417 ~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~  472 (495)
T 1opk_A          417 MSPYPGIDL-SQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQA  472 (495)
T ss_dssp             CCSSTTCCG-GGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCCH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence               333211 12222222222233344567889999999999999999999999873

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.96  E-value=9.8e-30  Score=293.94  Aligned_cols=250  Identities=10%  Similarity=-0.002  Sum_probs=169.7

Q ss_pred             HHHhhhc--cccceeeeCCCCC-ccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLN-AFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  +|.|+||+|...+ .....+..++.|+.... ..............+....|+|++.++.....+...+  
T Consensus        67 y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~--  143 (365)
T 3e7e_A           67 VYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSV--  143 (365)
T ss_dssp             EEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEE--
T ss_pred             EEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcE--
Confidence            4444444  4789999994322 01223566666665322 1112222333333445556899888777665443333  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhh----cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc--
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNA----RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ--  364 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~----~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~--  364 (1092)
                                    ++||||+||+|.++|..    ....+++.+++.|+.||+.||+|||++||+||||||+||||+.  
T Consensus       144 --------------lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~  209 (365)
T 3e7e_A          144 --------------LVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGF  209 (365)
T ss_dssp             --------------EEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGG
T ss_pred             --------------EEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccc
Confidence                          38999999999999975    3456888899999999999999999999999999999999998  


Q ss_pred             ---------CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccC
Q 001366          365 ---------SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYG  435 (1092)
Q Consensus       365 ---------~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (1092)
                               .+.+||+|||+++.+....                                                    
T Consensus       210 ~~~~~~~~~~~~~kl~DFG~a~~~~~~~----------------------------------------------------  237 (365)
T 3e7e_A          210 LEQDDEDDLSAGLALIDLGQSIDMKLFP----------------------------------------------------  237 (365)
T ss_dssp             TCC------CTTEEECCCTTCEEGGGSC----------------------------------------------------
T ss_pred             cCccccccccCCEEEeeCchhhhhhccC----------------------------------------------------
Confidence                     8999999999997643100                                                    


Q ss_pred             CcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccc
Q 001366          436 NKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNI  515 (1092)
Q Consensus       436 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDI  515 (1092)
                                                                       .....+..+||++|+|||++.+..++.++||
T Consensus       238 -------------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  268 (365)
T 3e7e_A          238 -------------------------------------------------KGTIFTAKCETSGFQCVEMLSNKPWNYQIDY  268 (365)
T ss_dssp             -------------------------------------------------TTEEECCSSCTTSCCCHHHHTTCCBSTHHHH
T ss_pred             -------------------------------------------------CCceeeeecCCCCCCChHHhcCCCCCccccH
Confidence                                                             0011225679999999999999999999999


Q ss_pred             hhhhHHHHHHcCCCCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          516 YSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       516 wSLGvll~ell~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      |||||+||||+++..+....... .......++..  ...+...+|+..||.++|.+|++..+.|.+.+
T Consensus       269 wslG~il~elltg~~pf~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l  334 (365)
T 3e7e_A          269 FGVAATVYCMLFGTYMKVKNEGG-ECKPEGLFRRL--PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKL  334 (365)
T ss_dssp             HHHHHHHHHHHHSSCCCEEEETT-EEEECSCCTTC--SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCccccCCCC-ceeechhcccc--CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHH
Confidence            99999999999872221000000 00001111111  22456789999999999999966555555443

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.96  E-value=1.7e-29  Score=299.01  Aligned_cols=243  Identities=16%  Similarity=0.172  Sum_probs=158.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhcc-CCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVAS-NASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .+|.|.||.....+     +..++.|+....    ......++..++.. ..||||+.++.....+...+          
T Consensus        25 ~G~~g~V~~~~~~~-----g~~vAvK~~~~~----~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~----------   85 (434)
T 2rio_A           25 YGSSGTVVFQGSFQ-----GRPVAVKRMLID----FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLY----------   85 (434)
T ss_dssp             ECSTTCEEEEEESS-----SSEEEEEEEEGG----GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEE----------
T ss_pred             eCCCeEEEEEEEEC-----CeEEEEEEEcHH----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEE----------
Confidence            34667775432212     455666554321    12334455566654 48999998876654333333          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCC------CHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC-------
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKG------KRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS-------  365 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~------~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~-------  365 (1092)
                            ++||||. ++|.++|...+...      ...+++.|+.||+.||+|||++||+||||||+||||+..       
T Consensus        86 ------lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~  158 (434)
T 2rio_A           86 ------IALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQ  158 (434)
T ss_dssp             ------EEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCC
T ss_pred             ------EEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCccccccc
Confidence                  3899996 59999997654321      222467899999999999999999999999999999754       


Q ss_pred             ------CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccc
Q 001366          366 ------NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIE  439 (1092)
Q Consensus       366 ------~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1092)
                            +.+||+|||+++........                                                      
T Consensus       159 ~~~~~~~~~kL~DFG~a~~~~~~~~~------------------------------------------------------  184 (434)
T 2rio_A          159 QTGAENLRILISDFGLCKKLDSGQSS------------------------------------------------------  184 (434)
T ss_dssp             TTCCCSCEEEECCCTTCEECCC----------------------------------------------------------
T ss_pred             ccCCCceEEEEcccccceecCCCCcc------------------------------------------------------
Confidence                  48999999998875410000                                                      


Q ss_pred             ccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-------CCCCcc
Q 001366          440 TANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-------GVCTTS  512 (1092)
Q Consensus       440 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-------~~~t~~  512 (1092)
                                                                   ........+||++|+|||++.+       ..++.+
T Consensus       185 ---------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~  219 (434)
T 2rio_A          185 ---------------------------------------------FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRS  219 (434)
T ss_dssp             -------------------------------------------------------CCTTSCHHHHSCCCTTSCCCCCCTH
T ss_pred             ---------------------------------------------ceeeecCCCCCCCccCHHHhccccccccccCcchh
Confidence                                                         0001124579999999999976       568999


Q ss_pred             ccchhhhHHHHHHcC-C---CCcHHHHH-HHHHhccccCCCCCC--CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          513 SNIYSLGVLFFELFG-R---FDSERALA-AAMSDLRDRILPPSF--LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       513 sDIwSLGvll~ell~-~---f~~~~~~~-~~~~~~~~~~~p~~~--~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      +|||||||+||||++ +   |....... ..+.........+..  ...++++.+|+.+||++||.+|||+.++|+||||
T Consensus       220 ~DiwSlG~il~ellt~g~~Pf~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp~f  299 (434)
T 2rio_A          220 IDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLF  299 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTCSTTTHHHHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSGGG
T ss_pred             hhhHhHHHHHHHHHhCCCCCCCCchhhHHHHhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHhCCcc
Confidence            999999999999998 4   43322111 111111111101111  1123678899999999999999999999999999


Q ss_pred             hh
Q 001366          586 NE  587 (1092)
Q Consensus       586 ~~  587 (1092)
                      ..
T Consensus       300 ~~  301 (434)
T 2rio_A          300 WP  301 (434)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.96  E-value=1.4e-29  Score=283.69  Aligned_cols=246  Identities=14%  Similarity=0.089  Sum_probs=166.8

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhc--cCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVA--SNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.++  |.|.||+|...      +..++.|++....    .....++..++.  ..+|||++.++.......... 
T Consensus        10 y~~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~----~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~-   78 (301)
T 3q4u_A           10 ITLLECVGKGRYGEVWRGSWQ------GENVAVKIFSSRD----EKSWFRETELYNTVMLRHENILGFIASDMTSRHSS-   78 (301)
T ss_dssp             CEEEEEEEECSSEEEEEEEET------TEEEEEEEECGGG----HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTE-
T ss_pred             EEEEEeeccCCCcEEEEEEEC------CEEEEEEEecccc----chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCC-
Confidence            44444444  78999999762      4556666653321    111122222222  368999998766533211100 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh--------hcCccccCCCCCCeE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHH--------TQGVTFLDLKPSSFK  361 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lH--------s~gIvHrDLKP~Nil  361 (1092)
                          ..       ...+|||++|++|.++++..  .++...++.|+.||+.||+|||        ++||+||||||+|||
T Consensus        79 ----~~-------~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil  145 (301)
T 3q4u_A           79 ----TQ-------LWLITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNIL  145 (301)
T ss_dssp             ----EE-------EEEEECCCTTCBHHHHHTTC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEE
T ss_pred             ----ce-------eEEehhhccCCCHHHHHhhc--ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEE
Confidence                00       11389999999999999654  6888899999999999999999        999999999999999


Q ss_pred             EccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          362 LLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       362 l~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      ++.++.+||+|||+++........                                                        
T Consensus       146 l~~~~~~kl~Dfg~a~~~~~~~~~--------------------------------------------------------  169 (301)
T 3q4u_A          146 VKKNGQCCIADLGLAVMHSQSTNQ--------------------------------------------------------  169 (301)
T ss_dssp             ECTTSCEEECCCTTCEEEETTTTE--------------------------------------------------------
T ss_pred             EcCCCCEEEeeCCCeeeccccccc--------------------------------------------------------
Confidence            999999999999998765421000                                                        


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC------CCCccccc
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG------VCTTSSNI  515 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~------~~t~~sDI  515 (1092)
                                                                 .........||+.|+|||.+.+.      .++.++||
T Consensus       170 -------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Dv  206 (301)
T 3q4u_A          170 -------------------------------------------LDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDI  206 (301)
T ss_dssp             -------------------------------------------EECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHH
T ss_pred             -------------------------------------------ccccccccccccceeChhhhcCcCCCCcccCCchhhH
Confidence                                                       00001145799999999999886      56689999


Q ss_pred             hhhhHHHHHHcCC----------CCcH-------HHHHHHHHhccccCCCCCCC------CCChhHHHHHHhccccCCCC
Q 001366          516 YSLGVLFFELFGR----------FDSE-------RALAAAMSDLRDRILPPSFL------SENPKEAGFCLWQLHPEPLS  572 (1092)
Q Consensus       516 wSLGvll~ell~~----------f~~~-------~~~~~~~~~~~~~~~p~~~~------~~~~~~~~li~~lL~~dP~~  572 (1092)
                      |||||+||||+++          ..+.       ................+..+      ..++.+.+|+.+||++||.+
T Consensus       207 wslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  286 (301)
T 3q4u_A          207 WAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSA  286 (301)
T ss_dssp             HHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGG
T ss_pred             HHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhh
Confidence            9999999999986          1111       01111111111111111111      12356889999999999999


Q ss_pred             CCCHHHHhhh
Q 001366          573 RPTTREILQS  582 (1092)
Q Consensus       573 Rpsa~eiL~~  582 (1092)
                      |||+.+|++.
T Consensus       287 Rps~~~i~~~  296 (301)
T 3q4u_A          287 RLTALRIKKT  296 (301)
T ss_dssp             SCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999999874

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.96  E-value=6.1e-30  Score=295.77  Aligned_cols=249  Identities=18%  Similarity=0.170  Sum_probs=169.5

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCC-----------CCCCCccccc
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNA-----------SPKPVGVGTA  280 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  280 (1092)
                      |.+.+.++  |.|.||++...    ..+..++.|++....  .......++..++....           |||++.+++.
T Consensus        21 y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~   94 (373)
T 1q8y_A           21 YILVRKLGWGHFSTVWLAKDM----VNNTHVAMKIVRGDK--VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH   94 (373)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred             EEEEEeeeecCCeEEEEEEec----CCCcEEEEEEecCCc--cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHH
Confidence            55544444  78999999752    225566666653211  11122223333333332           7888887666


Q ss_pred             eecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhc-CccccCCCCC
Q 001366          281 VVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQ-GVTFLDLKPS  358 (1092)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~-gIvHrDLKP~  358 (1092)
                      ........      . .     ...+|+|+ |++|.+++... ...++..+++.|+.||+.||+|||++ ||+||||||+
T Consensus        95 ~~~~~~~~------~-~-----~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~  161 (373)
T 1q8y_A           95 FNHKGPNG------V-H-----VVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPE  161 (373)
T ss_dssp             EEEEETTE------E-E-----EEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGG
T ss_pred             hhccCCCC------c-e-----EEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChH
Confidence            44322100      0 0     11378888 99999999764 34588889999999999999999998 9999999999


Q ss_pred             CeEEccC------CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccC
Q 001366          359 SFKLLQS------NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPS  432 (1092)
Q Consensus       359 Nill~~~------~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (1092)
                      ||||+..      +.+||+|||+++.....                                                  
T Consensus       162 NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~--------------------------------------------------  191 (373)
T 1q8y_A          162 NVLMEIVDSPENLIQIKIADLGNACWYDEH--------------------------------------------------  191 (373)
T ss_dssp             GEEEEEEETTTTEEEEEECCCTTCEETTBC--------------------------------------------------
T ss_pred             HeEEeccCCCcCcceEEEcccccccccCCC--------------------------------------------------
Confidence            9999543      47999999988664310                                                  


Q ss_pred             ccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCcc
Q 001366          433 KYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTS  512 (1092)
Q Consensus       433 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~  512 (1092)
                                                                              .+...||+.|+|||++.+..++.+
T Consensus       192 --------------------------------------------------------~~~~~~t~~y~aPE~~~~~~~~~~  215 (373)
T 1q8y_A          192 --------------------------------------------------------YTNSIQTREYRSPEVLLGAPWGCG  215 (373)
T ss_dssp             --------------------------------------------------------CCSCCSCGGGCCHHHHHTCCCCTH
T ss_pred             --------------------------------------------------------CCCCCCCccccCcHHHhCCCCCch
Confidence                                                                    013468999999999999999999


Q ss_pred             ccchhhhHHHHHHcCC---CCcHH---------HHHHHHHhccccCCCC-------------------------------
Q 001366          513 SNIYSLGVLFFELFGR---FDSER---------ALAAAMSDLRDRILPP-------------------------------  549 (1092)
Q Consensus       513 sDIwSLGvll~ell~~---f~~~~---------~~~~~~~~~~~~~~p~-------------------------------  549 (1092)
                      +|||||||+||||+++   |....         .....+..+ . .+|+                               
T Consensus       216 ~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (373)
T 1q8y_A          216 ADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELL-G-ELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLE  293 (373)
T ss_dssp             HHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHH-C-SCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHH
T ss_pred             HhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhc-C-CCCHHHHhccchhhhhcCCcchhcccccccccchh
Confidence            9999999999999986   43321         111111111 0 0110                               


Q ss_pred             -------CC-CCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          550 -------SF-LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       550 -------~~-~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                             .+ ...++.+.+||.+||++||.+|||+.|+|+||||.+..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  341 (373)
T 1q8y_A          294 DVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTL  341 (373)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             hhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhccc
Confidence                   00 11235677999999999999999999999999998753

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.6e-29  Score=285.19  Aligned_cols=243  Identities=19%  Similarity=0.237  Sum_probs=171.8

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCc-----hhhHhhhhhhhhhccC----CCCCCCcccccee
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-----SDAALKAAGAMMVASN----ASPKPVGVGTAVV  282 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  282 (1092)
                      |.+.+.+  +|.|.||++....    .+..++.|++......     .......++...+...    +|||++.+++...
T Consensus        33 y~~~~~lg~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~  108 (312)
T 2iwi_A           33 YRLGPLLGKGGFGTVFAGHRLT----DRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFE  108 (312)
T ss_dssp             CEEEEEEEEETTEEEEEEECTT----TCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-
T ss_pred             eEEeeEEEcCCCEEEEEEEEcc----CCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEe
Confidence            5554444  4789999997622    2455666665332211     1111222233333333    8999998776543


Q ss_pred             cCCCCCCCccCCCCCccccCCCccccc-CCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeE
Q 001366          283 SNGSLDLGARTGVPASCWIGGLRQGSS-DHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFK  361 (1092)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nil  361 (1092)
                      .+...+                .+|+| +.|++|.+++...+ .++..+++.++.||+.||+|||++||+||||||+||+
T Consensus       109 ~~~~~~----------------~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil  171 (312)
T 2iwi_A          109 TQEGFM----------------LVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENIL  171 (312)
T ss_dssp             ----CE----------------EEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEE
T ss_pred             cCCeEE----------------EEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEE
Confidence            322222                36888 79999999998764 4778899999999999999999999999999999999


Q ss_pred             Ec-cCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccc
Q 001366          362 LL-QSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIET  440 (1092)
Q Consensus       362 l~-~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1092)
                      ++ .++.+||+|||+++.....                                                          
T Consensus       172 ~~~~~~~~kl~dfg~~~~~~~~----------------------------------------------------------  193 (312)
T 2iwi_A          172 IDLRRGCAKLIDFGSGALLHDE----------------------------------------------------------  193 (312)
T ss_dssp             EETTTTEEEECCCSSCEECCSS----------------------------------------------------------
T ss_pred             EeCCCCeEEEEEcchhhhcccC----------------------------------------------------------
Confidence            99 7899999999988764310                                                          


Q ss_pred             cCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-Cccccchhhh
Q 001366          441 ANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLG  519 (1092)
Q Consensus       441 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLG  519 (1092)
                                                                     ......||+.|+|||++.+..+ +.++||||||
T Consensus       194 -----------------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG  226 (312)
T 2iwi_A          194 -----------------------------------------------PYTDFDGTRVYSPPEWISRHQYHALPATVWSLG  226 (312)
T ss_dssp             -----------------------------------------------CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHH
T ss_pred             -----------------------------------------------cccccCCcccccCceeeecCCCCCccchHHHHH
Confidence                                                           0113468999999999987665 5699999999


Q ss_pred             HHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          520 VLFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       520 vll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                      |+||||+++   |.....   ....  ...++   ...++.+.+|+.+||+.||.+|||+.|+|+||||....+
T Consensus       227 ~il~~l~~g~~pf~~~~~---~~~~--~~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~~~  292 (312)
T 2iwi_A          227 ILLYDMVCGDIPFERDQE---ILEA--ELHFP---AHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPAE  292 (312)
T ss_dssp             HHHHHHHHSSCSCCSHHH---HHHT--CCCCC---TTSCHHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC---
T ss_pred             HHHHHHHHCCCCCCChHH---Hhhh--ccCCc---ccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhcCchh
Confidence            999999986   443322   1111  11122   335788999999999999999999999999999987644

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.96  E-value=3.1e-29  Score=280.08  Aligned_cols=243  Identities=13%  Similarity=0.033  Sum_probs=174.1

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..+|.|.||+|...+  ...+..++.|++....... ......++...+...+|||++.++.... ....+         
T Consensus        26 g~G~~g~Vy~~~~~~--~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~---------   93 (291)
T 1xbb_A           26 GSGNFGTVKKGYYQM--KKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWM---------   93 (291)
T ss_dssp             EECSSEEEEEEEEEC--SSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-SSSEE---------
T ss_pred             ccccCeeeEeeeecC--CCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC-CCCcE---------
Confidence            345789999994311  1224556666654332222 2344556677788889999998776542 11111         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+|||++|++|.+++...+ .++..+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++
T Consensus        94 -------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  165 (291)
T 1xbb_A           94 -------LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSK  165 (291)
T ss_dssp             -------EEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             -------EEEEeCCCCCHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcce
Confidence                   3899999999999998754 47788999999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ........                                                                        
T Consensus       166 ~~~~~~~~------------------------------------------------------------------------  173 (291)
T 1xbb_A          166 ALRADENY------------------------------------------------------------------------  173 (291)
T ss_dssp             ECCTTCSE------------------------------------------------------------------------
T ss_pred             eeccCCCc------------------------------------------------------------------------
Confidence            64411000                                                                        


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~  533 (1092)
                                                  ........+|+.|+|||.+.+..++.++|||||||+||||++ +   |....
T Consensus       174 ----------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~  225 (291)
T 1xbb_A          174 ----------------------------YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  225 (291)
T ss_dssp             ----------------------------EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             ----------------------------ccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCC
Confidence                                        000012346788999999998889999999999999999998 5   43322


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .. .....+.....++.....++.+.+|+.+||++||.+||++.++++.
T Consensus       226 ~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  273 (291)
T 1xbb_A          226 GS-EVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELR  273 (291)
T ss_dssp             HH-HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             HH-HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            22 2222333333333344567889999999999999999999999873

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.96  E-value=3.7e-29  Score=282.33  Aligned_cols=255  Identities=13%  Similarity=0.049  Sum_probs=172.3

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  +|.|.||++..... ...+..++.|++..... ........++...+...+|||++.++..........  
T Consensus        36 y~~~~~lg~G~~g~V~~~~~~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~--  112 (313)
T 3brb_A           36 LILGKILGEGEFGSVMEGNLKQE-DGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQG--  112 (313)
T ss_dssp             EEEEEEEEC-CCCCEEEEEEECT-TSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------
T ss_pred             eeeccceeecCCeEEEEEEEecc-CCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccC--
Confidence            4444433  47899999865211 11133455555533222 222334556677788889999998776654322211  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhh-----cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNA-----RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~-----~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                        ...+       ..+|+|++|++|.+++..     ....++..+++.|+.||+.||.|||++||+||||||+||+++.+
T Consensus       113 --~~~~-------~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~  183 (313)
T 3brb_A          113 --IPKP-------MVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDD  183 (313)
T ss_dssp             ----CE-------EEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTT
T ss_pred             --Cccc-------EEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCC
Confidence              0011       138999999999999943     33468888999999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++........                                                            
T Consensus       184 ~~~kl~Dfg~~~~~~~~~~~------------------------------------------------------------  203 (313)
T 3brb_A          184 MTVCVADFGLSKKIYSGDYY------------------------------------------------------------  203 (313)
T ss_dssp             SCEEECSCSCC---------------------------------------------------------------------
T ss_pred             CcEEEeecCcceeccccccc------------------------------------------------------------
Confidence            99999999998764411000                                                            


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                                                               .......+++.|+|||.+.+..++.++|||||||+||||
T Consensus       204 -----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el  242 (313)
T 3brb_A          204 -----------------------------------------RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEI  242 (313)
T ss_dssp             ------------------------------------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------CcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHH
Confidence                                                     000133567889999999999999999999999999999


Q ss_pred             cC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          526 FG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       526 l~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ++ +   |...... .....+.....++.....++.+.+|+.+||.+||.+|||+.+++++
T Consensus       243 ~~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  302 (313)
T 3brb_A          243 ATRGMTPYPGVQNH-EMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQ  302 (313)
T ss_dssp             HTTSCCSSTTCCGG-GHHHHHHTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             HhcCCCCCccCCHH-HHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            98 4   3322211 1122222222334445567889999999999999999999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.1e-26  Score=272.46  Aligned_cols=280  Identities=12%  Similarity=0.063  Sum_probs=226.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 001366          781 VICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT  860 (1092)
Q Consensus       781 ~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t  860 (1092)
                      .+.+++|+|++.++++++.|++|++||+.+...  ..........+|...|.+++|+++ +.++++++.|+.|++||+.+
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQT--VRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCE--EEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEETTT
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeE--eeecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEEECCC
Confidence            455899999888888888899999999875211  111111123468889999999887 88999999999999999999


Q ss_pred             CceEEEeeccCccEEEEEEecCCCCEE-EEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEE------
Q 001366          861 GQTVSHYIEHEKRAWSVDFSQVHPTKL-ASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGS------  933 (1092)
Q Consensus       861 g~~i~~l~~h~~~V~sv~fsp~~~~~l-aSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs------  933 (1092)
                      ++.+..+..|...+.+++|+| ++..+ ++++.|+.|++||+++++.+..+.....+.+++|+|++. ++++++      
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~~~~~~  278 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGK-ELYIAQFSASNQ  278 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSS-EEEEEEEESCTT
T ss_pred             ceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCC-EEEEEECCCCcc
Confidence            999999999999999999999 66666 566689999999999999988888888899999999996 666666      


Q ss_pred             --CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC-CCE-EEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCe
Q 001366          934 --ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD-SGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009 (1092)
Q Consensus       934 --~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~-~~~-L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V 1009 (1092)
                        .|+.|++||+++++. ... ..|...+.+++|++ ++. +++++.|+.|++||+.+        +.....+. +...+
T Consensus       279 ~~~dg~i~~~d~~~~~~-~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~--------~~~~~~~~-~~~~~  347 (433)
T 3bws_A          279 ESGGGRLGIYSMDKEKL-IDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE--------KKVQKSIP-VFDKP  347 (433)
T ss_dssp             CSCCEEEEEEETTTTEE-EEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT--------TEEEEEEE-CSSSE
T ss_pred             ccCCCeEEEEECCCCcE-Eee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC--------CcEEEEec-CCCCC
Confidence              588999999997753 233 35566889999984 444 56778999999999983        44555554 67789


Q ss_pred             EEEEEecCCCEEEEEec---------------CCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCC
Q 001366         1010 NFVGLSTADGYIACGSE---------------SNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRS 1074 (1092)
Q Consensus      1010 ~~v~~spdg~~lasgs~---------------Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~ 1074 (1092)
                      .+++|+|+|++|++++.               ||.|++||..+++.+..+..               ...+.+++|+|++
T Consensus       348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------------~~~~~~~~~s~dg  412 (433)
T 3bws_A          348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------------GNQPTGLDVSPDN  412 (433)
T ss_dssp             EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---------------SSSEEEEEECTTS
T ss_pred             CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---------------CCCCceEEEcCCC
Confidence            99999999998888876               57999999998887776541               3468999999999


Q ss_pred             CEEEEEec-CCeEEEEEc
Q 001366         1075 DMVVAANS-SGCIKVLQM 1091 (1092)
Q Consensus      1075 ~~Lasgs~-DG~V~vW~l 1091 (1092)
                      ++|++++. ||.|++|++
T Consensus       413 ~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          413 RYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             CEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEEe
Confidence            99998875 999999986

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.96  E-value=3.7e-29  Score=281.92  Aligned_cols=250  Identities=15%  Similarity=0.177  Sum_probs=173.2

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (1092)
                      .+..|.+.+.++  |.|.||++....    .+..++.|++.....  ........++...+...+|||++.++.....+.
T Consensus        30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~  105 (310)
T 2wqm_A           30 TLANFRIEKKIGRGQFSEVYRAACLL----DGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDN  105 (310)
T ss_dssp             SGGGEEEEEEEECC--CEEEEEEETT----TCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT
T ss_pred             cccceEEEEeecCCCCceEEEEEEcC----CCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC
Confidence            344566655554  689999997521    245556655432221  222344556777788889999998776655433


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL  362 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill  362 (1092)
                      ..+                .+|||++|++|.+++..   ....++..+++.++.||+.||.|||++||+||||||+||++
T Consensus       106 ~~~----------------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~  169 (310)
T 2wqm_A          106 ELN----------------IVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFI  169 (310)
T ss_dssp             EEE----------------EEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEE
T ss_pred             cEE----------------EEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEE
Confidence            333                38999999999999964   34568888999999999999999999999999999999999


Q ss_pred             ccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccC
Q 001366          363 LQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN  442 (1092)
Q Consensus       363 ~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1092)
                      +.++.+||+|||+++......                                                           
T Consensus       170 ~~~~~~kl~Dfg~~~~~~~~~-----------------------------------------------------------  190 (310)
T 2wqm_A          170 TATGVVKLGDLGLGRFFSSKT-----------------------------------------------------------  190 (310)
T ss_dssp             CTTSCEEECCC---------------------------------------------------------------------
T ss_pred             cCCCCEEEEeccceeeecCCC-----------------------------------------------------------
Confidence            999999999999886543100                                                           


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHH
Q 001366          443 ESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLF  522 (1092)
Q Consensus       443 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll  522 (1092)
                                                                  .......||+.|+|||.+.+..++.++|||||||+|
T Consensus       191 --------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il  226 (310)
T 2wqm_A          191 --------------------------------------------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLL  226 (310)
T ss_dssp             ----------------------------------------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             --------------------------------------------ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHH
Confidence                                                        001134689999999999999999999999999999


Q ss_pred             HHHcCC---CCcHH-HHHHHHHhccccCCCCC-CCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          523 FELFGR---FDSER-ALAAAMSDLRDRILPPS-FLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       523 ~ell~~---f~~~~-~~~~~~~~~~~~~~p~~-~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |||+++   |.... ........+.....++. ....++.+.+|+.+||++||.+|||+.++++.
T Consensus       227 ~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~  291 (310)
T 2wqm_A          227 YEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDV  291 (310)
T ss_dssp             HHHHHSSCTTC---CCHHHHHHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHhCCCCCcccchhHHHHHHHhhcccCCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence            999986   43221 11222223333333332 23457889999999999999999999999974

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=3.9e-29  Score=284.65  Aligned_cols=249  Identities=14%  Similarity=0.128  Sum_probs=168.3

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.+.+.++  |.|.||+|...      +..++.|++....  .....+..+.......+|||++.++..........  
T Consensus        38 ~y~~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~~--~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~--  107 (337)
T 3mdy_A           38 QIQMVKQIGKGRYGEVWMGKWR------GEKVAVKVFFTTE--EASWFRETEIYQTVLMRHENILGFIAADIKGTGSW--  107 (337)
T ss_dssp             HCEEEEEEEEETTEEEEEEEET------TEEEEEEEEEGGG--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGG--
T ss_pred             ceEEEeEeecCCCeEEEEEEEC------CceEEEEEEeccc--cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCC--
Confidence            455555554  78999999763      4556666653221  11111222222222348999998776654331100  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhc--------CccccCCCCCCeEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQ--------GVTFLDLKPSSFKL  362 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~--------gIvHrDLKP~Nill  362 (1092)
                         ..       ...+|||++|++|.++|+..  .++..+++.++.||+.||.|||++        ||+||||||+|||+
T Consensus       108 ---~~-------~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill  175 (337)
T 3mdy_A          108 ---TQ-------LYLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILV  175 (337)
T ss_dssp             ---CE-------EEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEE
T ss_pred             ---Cc-------eEEEEeccCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEE
Confidence               00       11389999999999999765  578889999999999999999999        99999999999999


Q ss_pred             ccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccC
Q 001366          363 LQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN  442 (1092)
Q Consensus       363 ~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1092)
                      +.++.+||+|||+++.+......                                                         
T Consensus       176 ~~~~~~kl~Dfg~a~~~~~~~~~---------------------------------------------------------  198 (337)
T 3mdy_A          176 KKNGTCCIADLGLAVKFISDTNE---------------------------------------------------------  198 (337)
T ss_dssp             CTTSCEEECCCTTCEECC--------------------------------------------------------------
T ss_pred             CCCCCEEEEeCCCceeecccccc---------------------------------------------------------
Confidence            99999999999998765411000                                                         


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCcc------ccch
Q 001366          443 ESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTS------SNIY  516 (1092)
Q Consensus       443 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~------sDIw  516 (1092)
                                                                ........+||+.|+|||++.+..++..      +|||
T Consensus       199 ------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Diw  236 (337)
T 3mdy_A          199 ------------------------------------------VDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMY  236 (337)
T ss_dssp             ----------------------------------------------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHH
T ss_pred             ------------------------------------------ccCCCCCCccCcceeChhhcccccCCccccCccccchH
Confidence                                                      0000114579999999999988766654      9999


Q ss_pred             hhhHHHHHHcCC-------------CCc----HHHHHHHHHhccccCCCCCCC------CCChhHHHHHHhccccCCCCC
Q 001366          517 SLGVLFFELFGR-------------FDS----ERALAAAMSDLRDRILPPSFL------SENPKEAGFCLWQLHPEPLSR  573 (1092)
Q Consensus       517 SLGvll~ell~~-------------f~~----~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~li~~lL~~dP~~R  573 (1092)
                      ||||+||||+++             |..    .................+.++      ..++.+.+|+.+||++||.+|
T Consensus       237 slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R  316 (337)
T 3mdy_A          237 SFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASR  316 (337)
T ss_dssp             HHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGS
T ss_pred             HHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhC
Confidence            999999999986             111    001111111122222222221      223558899999999999999


Q ss_pred             CCHHHHhhh
Q 001366          574 PTTREILQS  582 (1092)
Q Consensus       574 psa~eiL~~  582 (1092)
                      ||+.+++++
T Consensus       317 ps~~ell~~  325 (337)
T 3mdy_A          317 LTALRVKKT  325 (337)
T ss_dssp             CCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            999999986

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.96  E-value=3.3e-29  Score=297.97  Aligned_cols=237  Identities=16%  Similarity=0.125  Sum_probs=175.9

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCC-CCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNG-SLDL  289 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  289 (1092)
                      +|.+.+.+  ++.|.||+|...      +..++.|+.....   ......++..++...+|||++.++....... ..+ 
T Consensus       194 ~~~~~~~lG~G~fg~V~~~~~~------~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~-  263 (450)
T 1k9a_A          194 ELKLLQTIGKGEFGDVMLGDYR------GNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY-  263 (450)
T ss_dssp             GEEEEEEEEECSSEEEEEEEET------TEEEEEEEESSCT---TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEE-
T ss_pred             HeEEEeeecCcCCeeEEEEEec------CCeEEEEEeCCch---HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceE-
Confidence            44444444  378999999763      3455666553322   2334456677788889999998776644322 122 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH-KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~-~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                     ++|||++||+|.++|+..+. .++...++.++.||+.||+|||++||+||||||+|||++.++.+
T Consensus       264 ---------------iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~  328 (450)
T 1k9a_A          264 ---------------IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVA  328 (450)
T ss_dssp             ---------------EEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCE
T ss_pred             ---------------EEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCE
Confidence                           38999999999999987654 36888899999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.....                                                                  
T Consensus       329 kl~DfG~a~~~~~~------------------------------------------------------------------  342 (450)
T 1k9a_A          329 KVSDFGLTKEASST------------------------------------------------------------------  342 (450)
T ss_dssp             EECCCTTCEECC--------------------------------------------------------------------
T ss_pred             EEeeCCCccccccc------------------------------------------------------------------
Confidence            99999998753200                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-  527 (1092)
                                                              .....++..|+|||.+.+..++.++|||||||+||||++ 
T Consensus       343 ----------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~  382 (450)
T 1k9a_A          343 ----------------------------------------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSF  382 (450)
T ss_dssp             --------------------------------------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred             ----------------------------------------ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                                    001245678999999999999999999999999999997 


Q ss_pred             C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          528 R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      +   |...... ..+..+.....++.....++.+.+|+.+||+.||.+|||+.+|++
T Consensus       383 g~~P~~~~~~~-~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~  438 (450)
T 1k9a_A          383 GRVPYPRIPLK-DVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLRE  438 (450)
T ss_dssp             TCCSSTTSCTT-THHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCCCCCHH-HHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            4   4332111 112222222223334456788999999999999999999999986

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.95  E-value=3.1e-29  Score=277.92  Aligned_cols=241  Identities=14%  Similarity=0.082  Sum_probs=175.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+...+  +|.|.||+|...+     +..++.|+.....  .......++..++...+|||++.++.....+ ..    
T Consensus        15 y~~~~~lg~G~~g~Vy~~~~~~-----~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~----   82 (279)
T 1qpc_A           15 LKLVERLGAGQFGEVWMGYYNG-----HTKVAVKSLKQGS--MSPDAFLAEANLMKQLQHQRLVRLYAVVTQE-PI----   82 (279)
T ss_dssp             EEEEEEEEEETTEEEEEEEETT-----TEEEEEEEECTTS--SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SC----
T ss_pred             hhheeeecCCCCeEEEEEEEcC-----CcEEEEEEecCCc--ccHHHHHHHHHHHHhCCCcCcceEEEEEcCC-Cc----
Confidence            4444443  4789999998643     3345555443222  2233445566778888999999876543211 11    


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                  ..+|||++|++|.+++.... ..++..+++.++.||+.||+|||++||+||||||+||+++.++.+||
T Consensus        83 ------------~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl  150 (279)
T 1qpc_A           83 ------------YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKI  150 (279)
T ss_dssp             ------------EEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEE
T ss_pred             ------------EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEE
Confidence                        13899999999999996532 35788899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.......                                                                  
T Consensus       151 ~Dfg~~~~~~~~~~------------------------------------------------------------------  164 (279)
T 1qpc_A          151 ADFGLARLIEDNEY------------------------------------------------------------------  164 (279)
T ss_dssp             CCCTTCEECSSSCE------------------------------------------------------------------
T ss_pred             CCCcccccccCccc------------------------------------------------------------------
Confidence            99999876441000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......+|..|+|||.+.+..++.++|||||||++|||++ + 
T Consensus       165 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~  208 (279)
T 1qpc_A          165 ------------------------------------TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR  208 (279)
T ss_dssp             ------------------------------------ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTC
T ss_pred             ------------------------------------ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCC
Confidence                                                00013346778999999998889999999999999999998 4 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                        |...... ..+..+.....+......++.+.+|+.+||+.||.+|||+.++++
T Consensus       209 ~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  262 (279)
T 1qpc_A          209 IPYPGMTNP-EVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRS  262 (279)
T ss_dssp             CSSTTCCHH-HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCcccCHH-HHHHHHhcccCCCCcccccHHHHHHHHHHhccChhhCCCHHHHHH
Confidence              4332222 222233322223333455788999999999999999999999987

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.95  E-value=6.7e-29  Score=282.29  Aligned_cols=246  Identities=15%  Similarity=0.074  Sum_probs=176.3

Q ss_pred             cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCccc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCW  300 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (1092)
                      +|.|.||++.....-...+..++.|++... .........++...+...+|||++.++.........       .     
T Consensus        52 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~-------~-----  118 (326)
T 2w1i_A           52 GNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR-------N-----  118 (326)
T ss_dssp             CSSEEEEEEEECTTSSSCCEEEEEEEESSC-CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC-----------C-----
T ss_pred             CCCeEEEEEEeccccCCCceEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCC-------c-----
Confidence            368999998732111222556666665332 222333445667778888999999876553321100       0     


Q ss_pred             cCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          301 IGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       301 ~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                        ...+|||++|++|.+++......++..+++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+++...
T Consensus       119 --~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~  196 (326)
T 2w1i_A          119 --LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLP  196 (326)
T ss_dssp             --CEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             --eEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence              123899999999999998876678898999999999999999999999999999999999999999999999987654


Q ss_pred             ccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCccc
Q 001366          381 ESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNE  460 (1092)
Q Consensus       381 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  460 (1092)
                      .....                                                                           
T Consensus       197 ~~~~~---------------------------------------------------------------------------  201 (326)
T 2w1i_A          197 QDKEY---------------------------------------------------------------------------  201 (326)
T ss_dssp             SSCSE---------------------------------------------------------------------------
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            11000                                                                           


Q ss_pred             ccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCcHHH----H-
Q 001366          461 HHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERA----L-  535 (1092)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~~----~-  535 (1092)
                                               ........+|..|+|||.+.+..++.++|||||||+||||+++..+...    . 
T Consensus       202 -------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~  256 (326)
T 2w1i_A          202 -------------------------YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM  256 (326)
T ss_dssp             -------------------------EECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHH
T ss_pred             -------------------------cccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence                                     0000133567789999999998899999999999999999986332211    0 


Q ss_pred             -------------HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          536 -------------AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       536 -------------~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                                   ......+.....++.....++.+.+|+.+||.+||.+|||+.+|++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~  315 (326)
T 2w1i_A          257 RMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL  315 (326)
T ss_dssp             HHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HhhccccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                         1111222222233444556788999999999999999999999986

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.95  E-value=2.6e-29  Score=286.34  Aligned_cols=254  Identities=12%  Similarity=0.121  Sum_probs=167.6

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.+  +|.|.||+|...      +..++.|++....  .......++...+...+|||++.++..........  
T Consensus        14 ~y~~~~~lg~G~~g~Vy~~~~~------~~~vavK~~~~~~--~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~--   83 (336)
T 3g2f_A           14 NLKLLELIGRGRYGAVYKGSLD------ERPVAVKVFSFAN--RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADG--   83 (336)
T ss_dssp             SEEEEEEEEECSSEEEEEEEET------TEEEEEEEEEGGG--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTS--
T ss_pred             HhheeeecccCCCeEEEEEEEC------CeEEEEEEeeccc--hhhHHHHHHHHHHHhccCcchhhheecccccccCC--
Confidence            45554444  478999999652      4556666653221  11112222333344579999998764322111000  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhc---------CccccCCCCCCeE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQ---------GVTFLDLKPSSFK  361 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~---------gIvHrDLKP~Nil  361 (1092)
                        ..  .     ..++||||+|++|.++|+...  .+...++.|+.||+.||.|||++         ||+||||||+|||
T Consensus        84 --~~--~-----~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nil  152 (336)
T 3g2f_A           84 --RM--E-----YLLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVL  152 (336)
T ss_dssp             --CE--E-----EEEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEE
T ss_pred             --Cc--e-----EEEEEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEE
Confidence              00  0     114899999999999997663  47778999999999999999999         9999999999999


Q ss_pred             EccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          362 LLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       362 l~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      ++.++.+||+|||+++.+........                                                      
T Consensus       153 l~~~~~~kL~DFG~a~~~~~~~~~~~------------------------------------------------------  178 (336)
T 3g2f_A          153 VKNDGTCVISDFGLSMRLTGNRLVRP------------------------------------------------------  178 (336)
T ss_dssp             ECTTSCEEECCCTTCEECSSSSCC--------------------------------------------------------
T ss_pred             EcCCCcEEEeeccceeecccccccCc------------------------------------------------------
Confidence            99999999999999987552110000                                                      


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-------CCCCcccc
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-------GVCTTSSN  514 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-------~~~t~~sD  514 (1092)
                                                               ..........+||+.|+|||++.+       ..++.++|
T Consensus       179 -----------------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~D  217 (336)
T 3g2f_A          179 -----------------------------------------GEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVD  217 (336)
T ss_dssp             ------------------------------------------------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHH
T ss_pred             -----------------------------------------cccccccccCCCccceeCchhhcCCcccccccccccccc
Confidence                                                     000011125679999999999987       45678999


Q ss_pred             chhhhHHHHHHcCC----CCcH-------------------HHHHHHHHhcc-ccCCCCCCCC---CChhHHHHHHhccc
Q 001366          515 IYSLGVLFFELFGR----FDSE-------------------RALAAAMSDLR-DRILPPSFLS---ENPKEAGFCLWQLH  567 (1092)
Q Consensus       515 IwSLGvll~ell~~----f~~~-------------------~~~~~~~~~~~-~~~~p~~~~~---~~~~~~~li~~lL~  567 (1092)
                      ||||||+||||+++    |+..                   ........... ...+|+.+..   .++.+.+|+.+||+
T Consensus       218 iwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~  297 (336)
T 3g2f_A          218 MYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWD  297 (336)
T ss_dssp             HHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhc
Confidence            99999999999975    1111                   11111111111 1122222222   22468899999999


Q ss_pred             cCCCCCCCHHHHhhh
Q 001366          568 PEPLSRPTTREILQS  582 (1092)
Q Consensus       568 ~dP~~Rpsa~eiL~~  582 (1092)
                      +||.+|||+.|+++.
T Consensus       298 ~dP~~Rps~~e~l~~  312 (336)
T 3g2f_A          298 QDAEARLTAQXAEER  312 (336)
T ss_dssp             SSGGGSCCHHHHHHH
T ss_pred             CChhhCcchHHHHHH
Confidence            999999999999764

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.95  E-value=4.3e-29  Score=282.13  Aligned_cols=259  Identities=13%  Similarity=0.074  Sum_probs=178.9

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||++...    ..+..++.|++... .........++..++...+|||++.++..........   
T Consensus        31 y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~---  102 (317)
T 2buj_A           31 YLFIQKLGEGGFSYVDLVEGL----HDGHFYALKRILCH-EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAK---  102 (317)
T ss_dssp             EEEEEEEEC--CEEEEEEEET----TTCCEEEEEEEEES-SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTE---
T ss_pred             EEEEEEecCCCCeEEEEEEec----CCCcEEEEEEEecC-CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCC---
Confidence            4444444  378999999852    12455666655332 2233344556777788889999998766543211000   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                        ..       ...+|||++|++|.+++..   .+..++..+++.++.||+.||.|||++||+||||||+||+++.++.+
T Consensus       103 --~~-------~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~  173 (317)
T 2buj_A          103 --HE-------AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQP  173 (317)
T ss_dssp             --EE-------EEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCE
T ss_pred             --ce-------eEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCE
Confidence              00       1138999999999999966   35568888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||+++........                                                               
T Consensus       174 kl~dfg~~~~~~~~~~~---------------------------------------------------------------  190 (317)
T 2buj_A          174 VLMDLGSMNQACIHVEG---------------------------------------------------------------  190 (317)
T ss_dssp             EECCCSSCEESCEEEES---------------------------------------------------------------
T ss_pred             EEEecCcchhccccccc---------------------------------------------------------------
Confidence            99999988764310000                                                               


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC---CCccccchhhhHHHHHH
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV---CTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~---~t~~sDIwSLGvll~el  525 (1092)
                                                     ..............||+.|+|||++.+..   ++.++|||||||++|||
T Consensus       191 -------------------------------~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el  239 (317)
T 2buj_A          191 -------------------------------SRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAM  239 (317)
T ss_dssp             -------------------------------HHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHH
T ss_pred             -------------------------------ccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHH
Confidence                                           00000001122456899999999997644   68999999999999999


Q ss_pred             cCCCCcHHHHH----HHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          526 FGRFDSERALA----AAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       526 l~~f~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      +++..+.....    ............+.....++.+.+|+.+||.+||.+|||+.+++++-
T Consensus       240 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L  301 (317)
T 2buj_A          240 MFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQL  301 (317)
T ss_dssp             HHSSCTTHHHHHTTSCHHHHHHCC--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HhCCCChhhhhcccchhhHHhhccCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHh
Confidence            98743332211    11111122222334455678899999999999999999999999864

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.95  E-value=4.5e-29  Score=296.99  Aligned_cols=242  Identities=15%  Similarity=0.080  Sum_probs=174.4

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ++.|.||+|...+     ...++.|+......  ......++..++...+|||++.++..... ...+   
T Consensus       186 ~~~~~~lG~G~fg~Vy~~~~~~-----~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~---  254 (452)
T 1fmk_A          186 LRLEVKLGQGCFGEVWMGTWNG-----TTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIY---  254 (452)
T ss_dssp             EEEEEEEEECSSCEEEEEEETT-----TEEEEEEECCTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE---
T ss_pred             ceeeeeecCCCCeEEEEEEECC-----CceEEEEEeccCCC--CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceE---
Confidence            4444433  4789999998754     23456655533222  22344567778888899999987754321 1111   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                   ++|||++||+|.++|+. .+..++..+++.++.||+.||+|||++||+||||||+|||++.++.+||
T Consensus       255 -------------iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl  321 (452)
T 1fmk_A          255 -------------IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKV  321 (452)
T ss_dssp             -------------EEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEE
T ss_pred             -------------EEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEE
Confidence                         38999999999999965 3345888899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.......                                                                  
T Consensus       322 ~DfG~a~~~~~~~~------------------------------------------------------------------  335 (452)
T 1fmk_A          322 ADFGLARLIEDNEY------------------------------------------------------------------  335 (452)
T ss_dssp             CCCCTTC-------------------------------------------------------------------------
T ss_pred             CCCccceecCCCce------------------------------------------------------------------
Confidence            99999876431000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                          .......++..|+|||.+.+..++.++|||||||+||||++ + 
T Consensus       336 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~  379 (452)
T 1fmk_A          336 ------------------------------------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR  379 (452)
T ss_dssp             -------------------------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             ------------------------------------ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCC
Confidence                                                00012346778999999999999999999999999999998 4 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                        |.+..... ....+.....++.....++.+.+|+.+||++||.+|||+.+|++.
T Consensus       380 ~P~~~~~~~~-~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~  434 (452)
T 1fmk_A          380 VPYPGMVNRE-VLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAF  434 (452)
T ss_dssp             CSSTTCCHHH-HHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCHHH-HHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence              44332222 222222222233334567889999999999999999999999874

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.95  E-value=1.4e-29  Score=296.17  Aligned_cols=248  Identities=12%  Similarity=0.070  Sum_probs=175.5

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||+|...    ..+..++.|++.............++..++...+||||+.+++........    
T Consensus        11 y~i~~~LG~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~----   82 (396)
T 4eut_A           11 WLLSDILGQGATANVFRGRHK----KTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTR----   82 (396)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTC----
T ss_pred             eEEEEEEEcCCCeEEEEEEEC----CCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCC----
Confidence            4444444  478999999763    235667777764433333334455677788888999999877654422111    


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE----ccC
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARG--HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL----LQS  365 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~--~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill----~~~  365 (1092)
                         ..       .++||||+|++|.++++...  ..++..+++.|+.||+.||+|||++||+||||||+|||+    +..
T Consensus        83 ---~~-------~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~  152 (396)
T 4eut_A           83 ---HK-------VLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQ  152 (396)
T ss_dssp             ---CE-------EEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSC
T ss_pred             ---ee-------EEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCc
Confidence               01       13899999999999997643  238888999999999999999999999999999999999    677


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++......                                                              
T Consensus       153 ~~~kL~DFG~a~~~~~~~--------------------------------------------------------------  170 (396)
T 4eut_A          153 SVYKLTDFGAARELEDDE--------------------------------------------------------------  170 (396)
T ss_dssp             EEEEECCGGGCEECCCGG--------------------------------------------------------------
T ss_pred             eeEEEecCCCceEccCCC--------------------------------------------------------------
Confidence            789999999987644100                                                              


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC--------CCCCccccchh
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG--------GVCTTSSNIYS  517 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~--------~~~t~~sDIwS  517 (1092)
                                                                ......||+.|+|||++.+        ..++.++||||
T Consensus       171 ------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwS  208 (396)
T 4eut_A          171 ------------------------------------------QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWS  208 (396)
T ss_dssp             ------------------------------------------GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHH
T ss_pred             ------------------------------------------ccccccCCccccCHHHhhccccccccccCCCcHHHHHH
Confidence                                                      0114568999999999875        56789999999


Q ss_pred             hhHHHHHHcCC---CCc---HHHHHHHHHhccccCCC--------------------CCCCC----CChhHHHHHHhccc
Q 001366          518 LGVLFFELFGR---FDS---ERALAAAMSDLRDRILP--------------------PSFLS----ENPKEAGFCLWQLH  567 (1092)
Q Consensus       518 LGvll~ell~~---f~~---~~~~~~~~~~~~~~~~p--------------------~~~~~----~~~~~~~li~~lL~  567 (1092)
                      |||++|||+++   |.+   .......+..+.....+                    +....    ..+.+.+|+.+||.
T Consensus       209 lG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~  288 (396)
T 4eut_A          209 IGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILE  288 (396)
T ss_dssp             HHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhc
Confidence            99999999986   321   11112222222211111                    11111    22456799999999


Q ss_pred             cCCCCCCCHHHHhhhh
Q 001366          568 PEPLSRPTTREILQSE  583 (1092)
Q Consensus       568 ~dP~~Rpsa~eiL~~~  583 (1092)
                      +||.+||++.++++..
T Consensus       289 ~dP~~R~s~~e~l~~l  304 (396)
T 4eut_A          289 ADQEKCWGFDQFFAET  304 (396)
T ss_dssp             CCTTTSCCHHHHHHHH
T ss_pred             cChhhhccHHHHHHHH
Confidence            9999999999987753

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.95  E-value=6.4e-29  Score=280.35  Aligned_cols=248  Identities=18%  Similarity=0.194  Sum_probs=171.3

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc--hhhHhhhhhhhhhccCCCCCCCccccceecCC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP--SDAALKAAGAMMVASNASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (1092)
                      -+..|.+.+.++  +.|.||++....    .+..++.|++......  .......++..++...+|||++.++.....+.
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~----~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~  107 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTV----RERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDG  107 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETT----TTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcC----CCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCC
Confidence            344566666554  689999997521    2455666665332211  11234456677788889999998777655433


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS  365 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~  365 (1092)
                      ..+                ++|||++|++|.++++..+ .++..+++.++.||+.||+|||++||+||||||+||+++.+
T Consensus       108 ~~~----------------lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~  170 (309)
T 2h34_A          108 QLY----------------VDMRLINGVDLAAMLRRQG-PLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSAD  170 (309)
T ss_dssp             EEE----------------EEEECCCCEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT
T ss_pred             eEE----------------EEEEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCC
Confidence            333                3899999999999998764 47787999999999999999999999999999999999999


Q ss_pred             CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccc
Q 001366          366 NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESD  445 (1092)
Q Consensus       366 ~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (1092)
                      +.+||+|||+++......                                                              
T Consensus       171 ~~~kl~Dfg~~~~~~~~~--------------------------------------------------------------  188 (309)
T 2h34_A          171 DFAYLVDFGIASATTDEK--------------------------------------------------------------  188 (309)
T ss_dssp             SCEEECSCCC----------------------------------------------------------------------
T ss_pred             CCEEEecCccCccccccc--------------------------------------------------------------
Confidence            999999999886643100                                                              


Q ss_pred             cccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHH
Q 001366          446 INEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFEL  525 (1092)
Q Consensus       446 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~el  525 (1092)
                                                              ........||+.|+|||.+.+..++.++|||||||+||||
T Consensus       189 ----------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  228 (309)
T 2h34_A          189 ----------------------------------------LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYEC  228 (309)
T ss_dssp             ------------------------------------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHH
T ss_pred             ----------------------------------------cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHH
Confidence                                                    0011145689999999999999999999999999999999


Q ss_pred             cCC---CCcHHHHHHHHHhccccCCC--CCCCCCChhHHHHHHhccccCCCCCC-CHHHHhh
Q 001366          526 FGR---FDSERALAAAMSDLRDRILP--PSFLSENPKEAGFCLWQLHPEPLSRP-TTREILQ  581 (1092)
Q Consensus       526 l~~---f~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~li~~lL~~dP~~Rp-sa~eiL~  581 (1092)
                      +++   |...... .....+.....+  ......++.+.+|+.+||++||.+|| +++++++
T Consensus       229 ~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~  289 (309)
T 2h34_A          229 LTGSPPYQGDQLS-VMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSA  289 (309)
T ss_dssp             HHSSCSSCSCHHH-HHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHH
T ss_pred             HHCCCCCCCchHH-HHHHHhccCCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHH
Confidence            985   5444332 222222222211  12345578899999999999999999 7777765

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.95  E-value=3e-29  Score=278.15  Aligned_cols=240  Identities=15%  Similarity=0.108  Sum_probs=171.2

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      +.+|.+.+.++  |.|.||++...      +..++.|+....   .......++...+...+|||++.++......... 
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~------~~~vavK~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~-   89 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDYR------GNKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG-   89 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET------TEEEEEEECCCC---C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--C-
T ss_pred             hhhceEEeEEecCCCceEEEEEEc------CCEEEEEEecch---hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCc-
Confidence            34555555554  78999999753      344555555322   1233445567778888999999877653322110 


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGH-KGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~-~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                                    ...+|||++|++|.+++...+. .++..+++.++.||+.||.|||++||+||||||+||+++.++.
T Consensus        90 --------------~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~  155 (278)
T 1byg_A           90 --------------LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNV  155 (278)
T ss_dssp             --------------CEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSC
T ss_pred             --------------eEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCc
Confidence                          1138999999999999976532 3677789999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +|++|||+++.....                                                                 
T Consensus       156 ~~l~Dfg~~~~~~~~-----------------------------------------------------------------  170 (278)
T 1byg_A          156 AKVSDFGLTKEASST-----------------------------------------------------------------  170 (278)
T ss_dssp             EEECCCCC------------------------------------------------------------------------
T ss_pred             EEEeecccccccccc-----------------------------------------------------------------
Confidence            999999988653310                                                                 


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                               .....+++.|+|||.+.+..++.++|||||||++|||++
T Consensus       171 -----------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t  209 (278)
T 1byg_A          171 -----------------------------------------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS  209 (278)
T ss_dssp             ----------------------------------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             -----------------------------------------ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHh
Confidence                                                     002245778999999998899999999999999999997


Q ss_pred             -C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          528 -R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       528 -~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                       +   |..... ......+.....++.....++.+.+|+.+||++||.+||++.++++
T Consensus       210 ~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  266 (278)
T 1byg_A          210 FGRVPYPRIPL-KDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE  266 (278)
T ss_dssp             TSCCSCTTSCG-GGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCCCCCCH-HHHHHHHhcCCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHH
Confidence             5   332211 1122222222233334456788999999999999999999999987

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.95  E-value=1.1e-28  Score=275.47  Aligned_cols=249  Identities=12%  Similarity=0.063  Sum_probs=170.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||++...    ..+..++.|+.......   ....++..++....|++++..+.........    
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~---~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~----   79 (296)
T 4hgt_A           11 YRLGRKIGSGSFGDIYLGTDI----AAGEEVAIKLECVKTKH---PQLHIESKIYKMMQGGVGIPTIRWCGAEGDY----   79 (296)
T ss_dssp             CEEEEEEEECSSSEEEEEEET----TTTEEEEEEEEEC---C---CCHHHHHHHHHHHTTSTTCCCEEEEEEETTE----
T ss_pred             eEEeeeecCCCCeEEEEEEEc----CCCceEEEEeecccccc---hHHHHHHHHHHHhcCCCCCCeeeeecCCCCc----
Confidence            4444444  478999999742    12455666654322221   1233344455666677766543332111111    


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE---ccCCcE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL---LQSNQV  368 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill---~~~~~v  368 (1092)
                                 ..++|||+ |++|.+++......++..+++.++.||+.||.|||++||+||||||+|||+   +..+.+
T Consensus        80 -----------~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~  147 (296)
T 4hgt_A           80 -----------NVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLV  147 (296)
T ss_dssp             -----------EEEEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCE
T ss_pred             -----------eEEEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeE
Confidence                       11389999 999999998766678999999999999999999999999999999999999   788999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.........                                                              
T Consensus       148 kL~Dfg~a~~~~~~~~~~--------------------------------------------------------------  165 (296)
T 4hgt_A          148 YIIDFGLAKKYRDARTHQ--------------------------------------------------------------  165 (296)
T ss_dssp             EECCCTTCEECBCTTTCC--------------------------------------------------------------
T ss_pred             EEecCccceeccCcccCc--------------------------------------------------------------
Confidence            999999998755211000                                                              


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                        ..+........||+.|+|||.+.+..++.++|||||||+||||+++
T Consensus       166 ----------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  211 (296)
T 4hgt_A          166 ----------------------------------HIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLG  211 (296)
T ss_dssp             ----------------------------------BCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ----------------------------------cCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcC
Confidence                                              0001111256789999999999999999999999999999999986


Q ss_pred             ---CCcH------HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          529 ---FDSE------RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       529 ---f~~~------~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                         |...      ...............+......++.+.+|+.+||+.||.+|||+.++++
T Consensus       212 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~  273 (296)
T 4hgt_A          212 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             SCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             CCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence               4321      1111111111111111112345788999999999999999999999987

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=3e-26  Score=260.47  Aligned_cols=284  Identities=12%  Similarity=0.142  Sum_probs=225.6

Q ss_pred             chhhhccchhhhhhccccccCCC-----CcEEeEcCCeEEEEEccc-ceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEE
Q 001366          723 NDLLRDRENLFLAQQDQEIQNPT-----DRLGAFFDGLCKYARYSK-FEVQGMLRTGEFNNSANVICSISFDRDEDHFAA  796 (1092)
Q Consensus       723 ~~~l~~~~~~~~~~~~~~~~~~~-----~~l~~~~D~~~k~w~~~~-~~~~~~l~~~~l~~h~~~V~sl~fspdg~~lat  796 (1092)
                      ..++.+|.+.+..+.+    +|+     -.++++.|+.+++|++.. ....    ...+.+|...|++++|+|++++|++
T Consensus        32 ~~~~~~h~~~v~~~~~----~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSF----SPPTLPGNFLIAGSWANDVRCWEVQDSGQTI----PKAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             EECSSCCSSCEEEEEE----CCTTSSSEEEEEEETTSEEEEEEECTTSCEE----EEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             eEeccCCCCceEEEEE----cCCCCCceEEEEECCCCcEEEEEcCCCCcee----EEEeccccCCEEEEEECcCCCEEEE
Confidence            4556778777766644    454     245778999999999875 2221    1235579999999999999999999


Q ss_pred             EeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEE--ecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccE
Q 001366          797 AGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCW--NNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRA  874 (1092)
Q Consensus       797 gg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V  874 (1092)
                      |+.|+.|+|||+...        .......|...|.+++|  +++ +.+|++++.||+|++||+.+++.+..+..|. .+
T Consensus       104 ~~~dg~v~iwd~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~  173 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSN--------QAIQIAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RC  173 (368)
T ss_dssp             EETTSEEEEEETTTT--------EEEEEEECSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSCSEEEECSS-CE
T ss_pred             EcCCCcEEEEEcCCC--------CceeeccccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcEEEEEecCC-Cc
Confidence            999999999998752        12235679999999999  776 7899999999999999999999988888665 56


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe---cCCceEEEEEccCCC---eEEEEEECCCeEEEEEcCCCC-
Q 001366          875 WSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK---NIANVCCVQFSAHSS---HLLAFGSADYRTYCYDLRNAR-  947 (1092)
Q Consensus       875 ~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~---~~~~V~sl~fsp~~~---~~latgs~Dg~I~vwDlr~~~-  947 (1092)
                      .++.+.+   ..+++++.|+.+++||++.........   ....+.++.+.++..   ..+++|+.|+.|++||++... 
T Consensus       174 ~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~  250 (368)
T 3mmy_A          174 YCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP  250 (368)
T ss_dssp             EEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred             eEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence            6777765   578899999999999998765443322   234566666665442   249999999999999999764 


Q ss_pred             -cceEEecCCCC------------CeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEE
Q 001366          948 -APWCVLAGHEK------------AVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVG 1013 (1092)
Q Consensus       948 -~~~~~l~~H~~------------~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~ 1013 (1092)
                       .....+.+|..            .|.+++|+ ++.+|++++.||.|++||+.        .+.++..+.+|...|++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~--------~~~~~~~~~~~~~~v~~~~  322 (368)
T 3mmy_A          251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD--------ARTKLKTSEQLDQPISACC  322 (368)
T ss_dssp             HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT--------TTEEEEECCCCSSCEEEEE
T ss_pred             cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC--------CCcEEEEecCCCCCceEEE
Confidence             24566777765            79999999 66789999999999999998        4677889999999999999


Q ss_pred             EecCCCEEEEEecCCcEEEEeC
Q 001366         1014 LSTADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus      1014 ~spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                      |+|+|.+|++|+.|+..+.|+.
T Consensus       323 ~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          323 FNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             ECTTSSCEEEEECCCSTTCGGG
T ss_pred             ECCCCCeEEEEecccccccccc
Confidence            9999999999999876555543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.9e-25  Score=258.08  Aligned_cols=272  Identities=11%  Similarity=0.039  Sum_probs=218.2

Q ss_pred             EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCCCCcccccceeeec
Q 001366          748 LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHF-AAAGVSKKIKIFEFNALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       748 l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~l-atgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~  826 (1092)
                      ++++.|+.+++|+....++...+.     .|. .+.+++|+|+|+++ ++++.|++|++||+.+.        .......
T Consensus         6 vs~~~d~~v~v~d~~~~~~~~~~~-----~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--------~~~~~~~   71 (391)
T 1l0q_A            6 IANSESDNISVIDVTSNKVTATIP-----VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NVIATVP   71 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEE-----CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCeEEEEee-----cCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC--------eEEEEEE
Confidence            355678999999998876655443     443 58999999999976 67779999999998652        1122233


Q ss_pred             CCCCeEEEEEecCCCCEE-EEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEE-EEEeCCCcEEEEecCCC
Q 001366          827 NRSKLSCVCWNNYIKNYL-ASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKL-ASGSDDCSVKLWNINEK  904 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~L-aSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~l-aSgs~Dg~I~iWDl~~~  904 (1092)
                      +...+.+++|+|+ +++| ++++.|+.|++||+.+++.+..+..| ..+.+++|+| +++.+ ++++.|+.|++||+.++
T Consensus        72 ~~~~v~~~~~spd-g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~  148 (391)
T 1l0q_A           72 AGSSPQGVAVSPD-GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTK  148 (391)
T ss_dssp             CSSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCccceEECCC-CCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCC
Confidence            4458999999998 6655 55667799999999999988888754 4689999999 77765 78888999999999999


Q ss_pred             ceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEE---CCCeE
Q 001366          905 NSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTAS---TDNKL  980 (1092)
Q Consensus       905 ~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs---~Dg~I  980 (1092)
                      +.+..+.....+.+++|+|++..++++++.++.|++||+++.+. ...+ .|...+.+++|+ ++.+|++++   .++.|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v  226 (391)
T 1l0q_A          149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-IDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTV  226 (391)
T ss_dssp             EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred             cEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-EEEE-ecCCCccceEECCCCCEEEEEecCcCCCcE
Confidence            99998888888999999999976667888999999999998753 3333 356688999998 566788777   68999


Q ss_pred             EEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEE-EEEecCCcEEEEeCCCCCceeeeecc
Q 001366          981 KLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYI-ACGSESNEVYAYHRSLPMPITSYKFG 1047 (1092)
Q Consensus       981 ~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~I~Iwd~~~~~~i~~~~~~ 1047 (1092)
                      ++||+.        .+..+..+..|. .+.+++|+|+|++| ++++.|+.|++||..+++.+..+..+
T Consensus       227 ~~~d~~--------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          227 SMIDTG--------TNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             EEEETT--------TTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EEEECC--------CCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence            999998        345666777665 57899999999977 67788999999999999888777643

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.95  E-value=7.5e-29  Score=306.64  Aligned_cols=244  Identities=13%  Similarity=0.034  Sum_probs=176.6

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      -..+|.|+||+|...+  ...+..++.|+....... .......++..++...+||||+.++.....+. .+        
T Consensus       377 LG~G~fG~Vy~~~~~~--~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~-~~--------  445 (635)
T 4fl3_A          377 LGSGNFGTVKKGYYQM--KKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAES-WM--------  445 (635)
T ss_dssp             EEECSSEEEEEEEEEC--SSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSS-EE--------
T ss_pred             eccCCCEEEEEEEEcC--CCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC-EE--------
Confidence            3456899999995421  122455666665433222 22344566777888889999998876543211 11        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              ++|||++|++|.++|...+ .++..+++.|+.||+.||+|||++||+||||||+||||+.++.+||+|||++
T Consensus       446 --------lv~E~~~~g~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla  516 (635)
T 4fl3_A          446 --------LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLS  516 (635)
T ss_dssp             --------EEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHH
T ss_pred             --------EEEEccCCCCHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCc
Confidence                    3899999999999997654 5777799999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.+......                                                                       
T Consensus       517 ~~~~~~~~~-----------------------------------------------------------------------  525 (635)
T 4fl3_A          517 KALRADENY-----------------------------------------------------------------------  525 (635)
T ss_dssp             HHTTC---------------------------------------------------------------------------
T ss_pred             cccccCccc-----------------------------------------------------------------------
Confidence            875421000                                                                       


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSE  532 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~  532 (1092)
                                                   ....+...||+.|+|||++.+..++.++|||||||+||||++ +   |...
T Consensus       526 -----------------------------~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~  576 (635)
T 4fl3_A          526 -----------------------------YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM  576 (635)
T ss_dssp             --------------------------------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             -----------------------------cccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                                         000113356788999999999999999999999999999997 5   4443


Q ss_pred             HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          533 RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .... ....+.....++.....++.+.+|+.+||+.||.+||++.+|++.
T Consensus       577 ~~~~-~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~  625 (635)
T 4fl3_A          577 KGSE-VTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELR  625 (635)
T ss_dssp             CHHH-HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             CHHH-HHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            3222 222233333333344567889999999999999999999999874

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.95  E-value=1.1e-28  Score=275.79  Aligned_cols=250  Identities=12%  Similarity=0.061  Sum_probs=171.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ++.|.||++...    ..+..++.|+.......   ....++...+...+|++++..+.........    
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~---~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~----   79 (296)
T 3uzp_A           11 YRLGRKIGSGSFGDIYLGTDI----AAGEEVAIKLECVKTKH---PQLHIESKIYKMMQGGVGIPTIRWCGAEGDY----   79 (296)
T ss_dssp             EEEEEEEEEETTEEEEEEEET----TTTEEEEEEEEESCSSC---CHHHHHHHHHHHHTTSTTCCCEEEEEEETTE----
T ss_pred             EEEEEEEccCCCeEEEEEEEc----CCCcEEEEEEecCCcch---hHHHHHHHHHHHhhcCCCCCccccccCCCCc----
Confidence            4444444  378999999841    12456666665332222   2233445556666777765443222111110    


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE---ccCCcE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL---LQSNQV  368 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill---~~~~~v  368 (1092)
                                 ..++|||+ |++|.+++......++..+++.++.||+.||.|||++||+||||||+|||+   +..+.+
T Consensus        80 -----------~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~  147 (296)
T 3uzp_A           80 -----------NVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLV  147 (296)
T ss_dssp             -----------EEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCE
T ss_pred             -----------eEEEEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeE
Confidence                       11489999 999999998766678999999999999999999999999999999999999   488999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.........                                                              
T Consensus       148 kl~Dfg~~~~~~~~~~~~--------------------------------------------------------------  165 (296)
T 3uzp_A          148 YIIDFGLAKKYRDARTHQ--------------------------------------------------------------  165 (296)
T ss_dssp             EECCCTTCEECBCTTTCC--------------------------------------------------------------
T ss_pred             EEeeCCCccccccccccc--------------------------------------------------------------
Confidence            999999988755211000                                                              


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                        ..+........||+.|+|||.+.+..++.++|||||||+||||+++
T Consensus       166 ----------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  211 (296)
T 3uzp_A          166 ----------------------------------HIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLG  211 (296)
T ss_dssp             ----------------------------------BCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ----------------------------------ccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhC
Confidence                                              0001111256799999999999999999999999999999999986


Q ss_pred             ---CCcHH------HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 ---FDSER------ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 ---f~~~~------~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                         |....      ..............+......++.+.+|+.+||+.||.+|||+.+|++.
T Consensus       212 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  274 (296)
T 3uzp_A          212 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQL  274 (296)
T ss_dssp             SCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHH
T ss_pred             CCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHH
Confidence               33210      1111111111111111123457889999999999999999999999874

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.95  E-value=1.3e-28  Score=305.58  Aligned_cols=248  Identities=14%  Similarity=0.080  Sum_probs=176.2

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  +|.|.||+|.....-. ....++.|+..............++...+...+||||+.++.... +...+   
T Consensus       392 y~i~~~LG~G~fG~Vy~a~~~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~---  466 (656)
T 2j0j_A          392 IELGRCIGEGQFGDVHQGIYMSPEN-PAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW---  466 (656)
T ss_dssp             EEEEEEEECCSSCCEEEEEECCSSS-CCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE---
T ss_pred             EEEeeEEeeCCCEEEEEEEEecCCC-ccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceE---
Confidence            4444333  4789999997532100 022334444322222222344456667788889999998776532 11111   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+|||++|++|.+++...+..++...++.++.||+.||+|||++||+||||||+|||++.++.+||+
T Consensus       467 -------------lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~  533 (656)
T 2j0j_A          467 -------------IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLG  533 (656)
T ss_dssp             -------------EEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEEC
T ss_pred             -------------EEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEE
Confidence                         3899999999999998777678888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.......                                                                   
T Consensus       534 DFG~a~~~~~~~~-------------------------------------------------------------------  546 (656)
T 2j0j_A          534 DFGLSRYMEDSTY-------------------------------------------------------------------  546 (656)
T ss_dssp             CCCCCCSCCC----------------------------------------------------------------------
T ss_pred             ecCCCeecCCCcc-------------------------------------------------------------------
Confidence            9999876441100                                                                   


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~--  528 (1092)
                                                         .......+|+.|+|||.+.+..++.++|||||||+||||++ +  
T Consensus       547 -----------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~  591 (656)
T 2j0j_A          547 -----------------------------------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVK  591 (656)
T ss_dssp             ------------------------------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             -----------------------------------eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCC
Confidence                                               00013456788999999998999999999999999999996 4  


Q ss_pred             -CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 -FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       |.+...... +..+.....++.....++.+.+|+.+||++||.+|||+.+|++.
T Consensus       592 Pf~~~~~~~~-~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~  645 (656)
T 2j0j_A          592 PFQGVKNNDV-IGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  645 (656)
T ss_dssp             TTTTCCHHHH-HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence             443332222 22222222333344567889999999999999999999999874

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.95  E-value=2.4e-29  Score=295.81  Aligned_cols=170  Identities=15%  Similarity=0.098  Sum_probs=134.1

Q ss_pred             ccccCCCCCHHHHHh------hcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          306 QGSSDHGVNLREWLN------ARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       306 ~~~~~~GgsL~~~l~------~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                      +++...+++|.++++      ..+..++...++.|+.||+.||+|||++||+||||||+||||+.++.+||+|||+++..
T Consensus       182 ~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~  261 (413)
T 3dzo_A          182 FLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRD  261 (413)
T ss_dssp             EEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGCEET
T ss_pred             EEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcccceEEEecCCeEEEEeccceeec
Confidence            455567899999994      22334667688899999999999999999999999999999999999999999998763


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ...                                                                             
T Consensus       262 ~~~-----------------------------------------------------------------------------  264 (413)
T 3dzo_A          262 GAS-----------------------------------------------------------------------------  264 (413)
T ss_dssp             TEE-----------------------------------------------------------------------------
T ss_pred             CCc-----------------------------------------------------------------------------
Confidence            310                                                                             


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccc----------cCCCCCccccchhhhHHHHHHcCC-
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEEL----------SGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l----------~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                   ....+| +.|+|||++          .+..++.++|||||||+||||+++ 
T Consensus       265 -----------------------------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~  314 (413)
T 3dzo_A          265 -----------------------------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCAD  314 (413)
T ss_dssp             -----------------------------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------------------cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCC
Confidence                                         114567 889999999          556689999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                        |.......     .....++ .....++.+.+|+.+||++||.+||++.++|+||||...
T Consensus       315 ~Pf~~~~~~~-----~~~~~~~-~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~~  370 (413)
T 3dzo_A          315 LPNTDDAALG-----GSEWIFR-SCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQL  370 (413)
T ss_dssp             CCCCTTGGGS-----CSGGGGS-SCCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             CCCCCcchhh-----hHHHHHh-hcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHHHH
Confidence              43322111     1111111 223457889999999999999999999999999999765

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.95  E-value=1.3e-28  Score=299.16  Aligned_cols=243  Identities=15%  Similarity=0.080  Sum_probs=177.8

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      .|.+.+.+  ++.|.||+|...+     ...++.|+......  ......++..++...+|||++.++..... ...+  
T Consensus       268 ~~~~~~~lG~G~fg~Vy~~~~~~-----~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~--  337 (535)
T 2h8h_A          268 SLRLEVKLGQGCFGEVWMGTWNG-----TTRVAIKTLKPGTM--SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIY--  337 (535)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETT-----TEEEEEEEECTTSS--CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE--
T ss_pred             hhhhheecccCCCeEEEEEEECC-----CceEEEEEeCCCCC--CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccce--
Confidence            34444444  4789999998744     23456655533222  22344567778888899999987754321 1111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                    ++|||++|++|.++|+. .+..++..+++.|+.||+.||+|||++||+||||||+||||+.++.+|
T Consensus       338 --------------lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~k  403 (535)
T 2h8h_A          338 --------------IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCK  403 (535)
T ss_dssp             --------------EEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEE
T ss_pred             --------------EeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEE
Confidence                          38999999999999965 334578889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++.......                                                                 
T Consensus       404 l~DFG~a~~~~~~~~-----------------------------------------------------------------  418 (535)
T 2h8h_A          404 VADFGLARLIEDNEY-----------------------------------------------------------------  418 (535)
T ss_dssp             ECCTTSTTTCCCHHH-----------------------------------------------------------------
T ss_pred             EcccccceecCCCce-----------------------------------------------------------------
Confidence            999999876431000                                                                 


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~  528 (1092)
                                                           .......++..|+|||++.+..++.++|||||||+||||++ +
T Consensus       419 -------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g  461 (535)
T 2h8h_A          419 -------------------------------------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKG  461 (535)
T ss_dssp             -------------------------------------HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTT
T ss_pred             -------------------------------------ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCC
Confidence                                                 00012345778999999999999999999999999999998 4


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                         |....... .+..+......+.....++.+.+||.+||+.||.+|||+.+|++.
T Consensus       462 ~~P~~~~~~~~-~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~  517 (535)
T 2h8h_A          462 RVPYPGMVNRE-VLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAF  517 (535)
T ss_dssp             CCSSTTCCHHH-HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCCHHH-HHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence               44332222 222222222233334567889999999999999999999999874

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=283.53  Aligned_cols=263  Identities=12%  Similarity=0.048  Sum_probs=175.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccc----cccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFK----ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      |.+.+.+  +|.|.||++.......    ..+..++.|+....      ....++..++...+|||++..+.........
T Consensus        44 y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~------~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  117 (352)
T 2jii_A           44 WKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD------GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLL  117 (352)
T ss_dssp             EEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT------STHHHHHHHHHHHCCHHHHHHHHHHTTCTTC
T ss_pred             EEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc------chHHHHHHHHHHhcccchhhhhhhhccCCcc
Confidence            5555555  4789999998642100    01345555554221      2344556667777899988754332211111


Q ss_pred             CCCccCCCCCcccc-C--CCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          288 DLGARTGVPASCWI-G--GLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~-~--~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                      .   ...+..++.. +  ..++|||+ |++|.++|... +..++..+++.|+.||+.||.|||++||+||||||+|||++
T Consensus       118 ~---i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~  193 (352)
T 2jii_A          118 A---IPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVD  193 (352)
T ss_dssp             S---CCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEE
T ss_pred             C---ccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEc
Confidence            0   0111111111 1  24589999 99999999765 35688889999999999999999999999999999999999


Q ss_pred             cCC--cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          364 QSN--QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       364 ~~~--~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      .++  .+||+|||+++.+........                                                      
T Consensus       194 ~~~~~~~kl~Dfg~a~~~~~~~~~~~------------------------------------------------------  219 (352)
T 2jii_A          194 PEDQSQVTLAGYGFAFRYCPSGKHVA------------------------------------------------------  219 (352)
T ss_dssp             TTEEEEEEECCGGGCBCSSGGGCCCC------------------------------------------------------
T ss_pred             CCCCceEEEecCcceeeccCCCcccc------------------------------------------------------
Confidence            988  899999999987552110000                                                      


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                                                                ..........||+.|+|||.+.+..++.++|||||||+
T Consensus       220 ------------------------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~i  257 (352)
T 2jii_A          220 ------------------------------------------YVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYC  257 (352)
T ss_dssp             ------------------------------------------CCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred             ------------------------------------------ccccccccccCCccccCHHHHccCCCCchhhHHHHHHH
Confidence                                                      00001124579999999999999999999999999999


Q ss_pred             HHHHcCC---CCcHH----HHHHHHHhccccCC--CC---CCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          522 FFELFGR---FDSER----ALAAAMSDLRDRIL--PP---SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       522 l~ell~~---f~~~~----~~~~~~~~~~~~~~--p~---~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||||+++   |....    ..............  +.   .....++.+.+|+.+||+.||.+||++.+|++.
T Consensus       258 l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  330 (352)
T 2jii_A          258 MLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNN  330 (352)
T ss_dssp             HHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHH
T ss_pred             HHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHH
Confidence            9999986   43321    11121211111111  11   112457889999999999999999999999874

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.95  E-value=1.7e-28  Score=275.93  Aligned_cols=240  Identities=17%  Similarity=0.122  Sum_probs=168.7

Q ss_pred             hccccceeeeCCCCCcccccccccccccccccc---CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT---MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      ..+|.|.||+|...      +..++.|++....   .........++..++...+|||++.++.....+...+       
T Consensus        40 g~G~~g~Vy~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~-------  106 (307)
T 2nru_A           40 GEGGFGVVYKGYVN------NTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLC-------  106 (307)
T ss_dssp             EECSSEEEEEEESS------SCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE-------
T ss_pred             ccCCCeEEEEEEEC------CceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceE-------
Confidence            34578999999863      3344554442211   1122334456667788889999998776644332222       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNAR--GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGP  373 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~--~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Df  373 (1092)
                               .+|+|++|++|.+++...  ...++...++.++.||+.||.|||++||+||||||+||+++.++.+|++||
T Consensus       107 ---------lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Df  177 (307)
T 2nru_A          107 ---------LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDF  177 (307)
T ss_dssp             ---------EEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCC
T ss_pred             ---------EEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeec
Confidence                     389999999999999643  345888899999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCC
Q 001366          374 IIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPH  453 (1092)
Q Consensus       374 g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  453 (1092)
                      |+++.......                                                                     
T Consensus       178 g~~~~~~~~~~---------------------------------------------------------------------  188 (307)
T 2nru_A          178 GLARASEKFAQ---------------------------------------------------------------------  188 (307)
T ss_dssp             TTCEECCSCSS---------------------------------------------------------------------
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            99876431000                                                                     


Q ss_pred             CCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CC
Q 001366          454 SHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                      ........||+.|+|||.+.+ .++.++|||||||++|||+++   |.
T Consensus       189 --------------------------------~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~  235 (307)
T 2nru_A          189 --------------------------------TVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVD  235 (307)
T ss_dssp             --------------------------------CEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBC
T ss_pred             --------------------------------cccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcc
Confidence                                            000113568999999998875 589999999999999999986   32


Q ss_pred             cHH------HHHHHHHhc-------cccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          531 SER------ALAAAMSDL-------RDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       531 ~~~------~~~~~~~~~-------~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ...      .........       ....+++.....++.+.+++.+||+++|.+|||+.+++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~  300 (307)
T 2nru_A          236 EHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQL  300 (307)
T ss_dssp             TTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             cCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            211      111111110       0111111111223557899999999999999999999875

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.95  E-value=5e-28  Score=289.41  Aligned_cols=248  Identities=13%  Similarity=0.087  Sum_probs=169.2

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccc-cceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVG-TAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  ++.|.||++...    ..+..++.|+........   ...++..++....|++.+..+ .........   
T Consensus         9 y~i~~~LG~G~fG~Vy~a~~~----~~~~~vAvK~~~~~~~~~---~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~---   78 (483)
T 3sv0_A            9 FRLGRKIGSGSFGEIYLGTNI----QTNEEVAIKLENVKTKHP---QLLYESKIYRILQGGTGIPNVRWFGVEGDYN---   78 (483)
T ss_dssp             EECCCCCEECSSCEEEEEEET----TTCCEEEEEEEETTCSSC---CHHHHHHHHHHTTTSTTCCCEEEEEEETTEE---
T ss_pred             EEEEEEEeeCCCEEEEEEEEC----CCCcEEEEEEeccccccH---HHHHHHHHHHHhcCCCCCCeEEEEEeeCCEE---
Confidence            4444444  478999999742    124566666543222221   233344455555554444322 221111111   


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE---ccCCc
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL---LQSNQ  367 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill---~~~~~  367 (1092)
                                   .++|||+ |++|.+++......++..+++.|+.||+.||+|||++||+||||||+||||   +..+.
T Consensus        79 -------------~lvme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~  144 (483)
T 3sv0_A           79 -------------VLVMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQ  144 (483)
T ss_dssp             -------------EEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTC
T ss_pred             -------------EEEEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCe
Confidence                         2479999 999999998777789999999999999999999999999999999999999   68899


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +||+|||+++.+.......                                                             
T Consensus       145 vkL~DFGla~~~~~~~~~~-------------------------------------------------------------  163 (483)
T 3sv0_A          145 VYIIDFGLAKKYRDTSTHQ-------------------------------------------------------------  163 (483)
T ss_dssp             EEECCCTTCEECBCTTTCC-------------------------------------------------------------
T ss_pred             EEEEeCCcceeccCCcccc-------------------------------------------------------------
Confidence            9999999998755211000                                                             


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~  527 (1092)
                                                         ..+.......+||+.|+|||.+.+..++.++|||||||+||||++
T Consensus       164 -----------------------------------~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~ellt  208 (483)
T 3sv0_A          164 -----------------------------------HIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLR  208 (483)
T ss_dssp             -----------------------------------BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------ccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHh
Confidence                                               000111225689999999999999999999999999999999998


Q ss_pred             C---CCcH-----HHHHHHHHhcc-ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          528 R---FDSE-----RALAAAMSDLR-DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       528 ~---f~~~-----~~~~~~~~~~~-~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      +   |...     ......+.... ...++......++++.+|+.+||+++|.+||++.+|++
T Consensus       209 G~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~  271 (483)
T 3sv0_A          209 GSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKR  271 (483)
T ss_dssp             SSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             CCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            6   4321     11111111111 11111112345788999999999999999999999887

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.95  E-value=2.3e-28  Score=279.02  Aligned_cols=246  Identities=13%  Similarity=0.095  Sum_probs=169.3

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhcc--CCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVAS--NASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.+  ++.|.||+|...      +..++.|++...    ......++..++..  .+|||++.++.......... 
T Consensus        44 y~~~~~lg~G~~g~Vy~~~~~------~~~vavK~~~~~----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~-  112 (342)
T 1b6c_B           44 IVLQESIGKGRFGEVWRGKWR------GEEVAVKIFSSR----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW-  112 (342)
T ss_dssp             CEEEEEEEEETTEEEEEEEET------TEEEEEEEECGG----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC-
T ss_pred             EEEEeeecCCCCcEEEEEEEc------CccEEEEEeCch----hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc-
Confidence            4444444  378999999762      455666665322    11222333333333  68999998776654332110 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh--------hcCccccCCCCCCeE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHH--------TQGVTFLDLKPSSFK  361 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lH--------s~gIvHrDLKP~Nil  361 (1092)
                          ..       ..++|||++|++|.++++..  .++..+++.++.||+.||.|||        ++||+||||||+|||
T Consensus       113 ----~~-------~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIl  179 (342)
T 1b6c_B          113 ----TQ-------LWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNIL  179 (342)
T ss_dssp             ----CC-------EEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEE
T ss_pred             ----ce-------eEEEEeecCCCcHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEE
Confidence                00       11389999999999999765  5788899999999999999999        899999999999999


Q ss_pred             EccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          362 LLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       362 l~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      ++.++.+||+|||+++........                                                        
T Consensus       180 l~~~~~~kL~Dfg~~~~~~~~~~~--------------------------------------------------------  203 (342)
T 1b6c_B          180 VKKNGTCCIADLGLAVRHDSATDT--------------------------------------------------------  203 (342)
T ss_dssp             ECTTSCEEECCCTTCEEEETTTTE--------------------------------------------------------
T ss_pred             ECCCCCEEEEECCCceeccccccc--------------------------------------------------------
Confidence            999999999999998765411000                                                        


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC------CCCccccc
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG------VCTTSSNI  515 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~------~~t~~sDI  515 (1092)
                                                                 .........||+.|+|||++.+.      .++.++||
T Consensus       204 -------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di  240 (342)
T 1b6c_B          204 -------------------------------------------IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADI  240 (342)
T ss_dssp             -------------------------------------------EEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHH
T ss_pred             -------------------------------------------cccccccCCcCcccCCHhhhcccccccccccCCcccH
Confidence                                                       00011245789999999999875      34479999


Q ss_pred             hhhhHHHHHHcCC-------------CCcH----HHHHHHHHhccccCCCCCCC------CCChhHHHHHHhccccCCCC
Q 001366          516 YSLGVLFFELFGR-------------FDSE----RALAAAMSDLRDRILPPSFL------SENPKEAGFCLWQLHPEPLS  572 (1092)
Q Consensus       516 wSLGvll~ell~~-------------f~~~----~~~~~~~~~~~~~~~p~~~~------~~~~~~~~li~~lL~~dP~~  572 (1092)
                      |||||+||||+++             |...    .........+....+.+.++      ...+.+.+|+.+||+.||.+
T Consensus       241 ~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~  320 (342)
T 1b6c_B          241 YAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAA  320 (342)
T ss_dssp             HHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGG
T ss_pred             HHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhh
Confidence            9999999999985             1111    01122222222222222222      12246789999999999999


Q ss_pred             CCCHHHHhhh
Q 001366          573 RPTTREILQS  582 (1092)
Q Consensus       573 Rpsa~eiL~~  582 (1092)
                      |||+.+|+++
T Consensus       321 Rps~~~i~~~  330 (342)
T 1b6c_B          321 RLTALRIKKT  330 (342)
T ss_dssp             SCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.5e-26  Score=267.83  Aligned_cols=251  Identities=13%  Similarity=0.203  Sum_probs=204.0

Q ss_pred             CCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc---eEEEeecc----------------------------------
Q 001366          828 RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ---TVSHYIEH----------------------------------  870 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~---~i~~l~~h----------------------------------  870 (1092)
                      ..++.+++|+++ +++|+++ .++.|++||+.+|+   .+..+..+                                  
T Consensus         4 ~~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            357899999998 6766655 57899999999998   66666533                                  


Q ss_pred             --------------------CccEEEEEEecCCCCEE-EEEeCCCcEEEEecC--CCceeeeEe---cCCceEEEEEccC
Q 001366          871 --------------------EKRAWSVDFSQVHPTKL-ASGSDDCSVKLWNIN--EKNSLATIK---NIANVCCVQFSAH  924 (1092)
Q Consensus       871 --------------------~~~V~sv~fsp~~~~~l-aSgs~Dg~I~iWDl~--~~~~l~~l~---~~~~V~sl~fsp~  924 (1092)
                                          ...|++++|+| ++..| ++|+.|++|++||+.  ++.++..+.   +...|++++|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             ------------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                                33699999999 77875 999999999999999  888888874   5688999999999


Q ss_pred             CCeEEEEEECCCeEEEEEcCCCCc---ceEEecCCCCCeEEEEEc-C---CCEEEEEECCCeEEEEEcCCCCCCCCCCCc
Q 001366          925 SSHLLAFGSADYRTYCYDLRNARA---PWCVLAGHEKAVSYVKFL-D---SGTLVTASTDNKLKLWDLKRTSHTGPSTNA  997 (1092)
Q Consensus       925 ~~~~latgs~Dg~I~vwDlr~~~~---~~~~l~~H~~~V~~v~fs-~---~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~  997 (1092)
                      +. +|++|+.+|.|++||+.+...   +...+.+|...|.+++|+ +   +.+|++|+.|++|++||+++        +.
T Consensus       161 ~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~--------~~  231 (450)
T 2vdu_B          161 DT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ--------CF  231 (450)
T ss_dssp             SS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC--------TT
T ss_pred             CC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC--------Cc
Confidence            95 899999999999999987653   223667899999999999 4   55899999999999999983        44


Q ss_pred             eeEE-EcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeecccc-CCCCC----------ccccCCCCCCE
Q 001366          998 CSLT-FSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSI-DPISG----------KETDDDNGLFV 1065 (1092)
Q Consensus       998 ~~~~-l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~-~~i~~----------~~~~~~h~~~V 1065 (1092)
                      ++.. +.+|...|++++|+ ++.+|++|+.|+.|++||+.+++.+..+..+.. ..+..          ..........|
T Consensus       232 ~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (450)
T 2vdu_B          232 IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV  310 (450)
T ss_dssp             CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred             eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence            5555 55899999999999 999999999999999999999998887764210 00000          00001334679


Q ss_pred             EEEEEeCCCCEEEEEe-cCCeEEEEEc
Q 001366         1066 SSVCWRRRSDMVVAAN-SSGCIKVLQM 1091 (1092)
Q Consensus      1066 ~sva~spd~~~Lasgs-~DG~V~vW~l 1091 (1092)
                      .+++|+|++.+|++++ .|+.|+||++
T Consensus       311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          311 SKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            9999999999999999 8999999997

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.94  E-value=8.2e-28  Score=273.32  Aligned_cols=265  Identities=15%  Similarity=0.078  Sum_probs=160.8

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  +|.|.||++...    ..+..++.|++.... ........++...+... .|||++.++........... 
T Consensus        30 y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~-  103 (337)
T 3ll6_A           30 LRVRRVLAEGGFAFVYEAQDV----GSGREYALKRLLSNE-EEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESD-  103 (337)
T ss_dssp             EEEEEEEECCSSEEEEEEEET----TTCCEEEEEEEEESS-HHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTST-
T ss_pred             EEEEEEEccCCceEEEEEEEC----CCCcEEEEEEecCCc-hHHHHHHHHHHHHHHHhccCCChhhccccccccccccc-
Confidence            3344444  478999999852    125566666553322 22223334455556666 49999988776543222110 


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHhhhcC--ccccCCCCCCeEEccCC
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNA--RGHKGKRIECLYIFRQIVALVDYHHTQG--VTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~--~~~~~~~~~~~~i~~qil~~l~~lHs~g--IvHrDLKP~Nill~~~~  366 (1092)
                      .....       ..++|+|+. |+|.+++..  ....++..+++.|+.||+.||+|||++|  |+||||||+|||++.++
T Consensus       104 ~~~~~-------~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~  175 (337)
T 3ll6_A          104 TGQAE-------FLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQG  175 (337)
T ss_dssp             TSSEE-------EEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTS
T ss_pred             cCCce-------EEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCC
Confidence            00011       124788886 699999965  3345888899999999999999999999  99999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++...........                                                          
T Consensus       176 ~~kl~Dfg~~~~~~~~~~~~~~----------------------------------------------------------  197 (337)
T 3ll6_A          176 TIKLCDFGSATTISHYPDYSWS----------------------------------------------------------  197 (337)
T ss_dssp             CEEBCCCTTCBCCSSCC---------------------------------------------------------------
T ss_pred             CEEEecCccceeccccCccccc----------------------------------------------------------
Confidence            9999999999875521100000                                                          


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccc---cCCCCCccccchhhhHHHH
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEEL---SGGVCTTSSNIYSLGVLFF  523 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l---~~~~~t~~sDIwSLGvll~  523 (1092)
                                                       ..............||+.|+|||++   .+..++.++|||||||+||
T Consensus       198 ---------------------------------~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~  244 (337)
T 3ll6_A          198 ---------------------------------AQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILY  244 (337)
T ss_dssp             -----------------------------------------------------------CCTTSCSSHHHHHHHHHHHHH
T ss_pred             ---------------------------------ccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHH
Confidence                                             0000000111245789999999998   5677899999999999999


Q ss_pred             HHcCCCCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhh
Q 001366          524 ELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEV  584 (1092)
Q Consensus       524 ell~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~  584 (1092)
                      ||+++..+...... ...+......+.....++.+.+|+.+||++||.+|||+.|++++..
T Consensus       245 el~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~  304 (337)
T 3ll6_A          245 LLCFRQHPFEDGAK-LRIVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQ  304 (337)
T ss_dssp             HHHHSSCCC-------------CCCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred             HHHhCCCCCcchhH-HHhhcCcccCCcccccchHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence            99986322221111 1112222222333445678899999999999999999999999854

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=5.3e-25  Score=254.37  Aligned_cols=263  Identities=10%  Similarity=0.040  Sum_probs=212.4

Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEE-EEEECCCcEEEEECCCCceEEEeecc
Q 001366          792 DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYL-ASADYDGVVKLWDACTGQTVSHYIEH  870 (1092)
Q Consensus       792 ~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~L-aSgs~DgtV~IWD~~tg~~i~~l~~h  870 (1092)
                      .++++++.|++|++||+...       . ......+...+.+++|+|+ +.+| ++++.|++|++||+.+++.+..+..+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~-------~-~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~   73 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN-------K-VTATIPVGSNPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVPAG   73 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT-------E-EEEEEECSSSEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             EEEEEcCCCCEEEEEECCCC-------e-EEEEeecCCCcceEEECCC-CCEEEEECCCCCeEEEEECCCCeEEEEEECC
Confidence            46888999999999998752       1 1222334566999999998 6554 77889999999999999998888765


Q ss_pred             CccEEEEEEecCCCCEE-EEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc
Q 001366          871 EKRAWSVDFSQVHPTKL-ASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP  949 (1092)
Q Consensus       871 ~~~V~sv~fsp~~~~~l-aSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~  949 (1092)
                      . .+.+++|+| ++..| ++++.|+.|++||+.+++.+..+.+...+.+++|+|++..++++++.++.|++||+++++. 
T Consensus        74 ~-~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-  150 (391)
T 1l0q_A           74 S-SPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-  150 (391)
T ss_dssp             S-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-
T ss_pred             C-CccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-
Confidence            5 899999999 77765 5666789999999999999999888889999999999976668888899999999988753 


Q ss_pred             eEEecCCCCCeEEEEEc-CCCEE-EEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEe--
Q 001366          950 WCVLAGHEKAVSYVKFL-DSGTL-VTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGS-- 1025 (1092)
Q Consensus       950 ~~~l~~H~~~V~~v~fs-~~~~L-~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-- 1025 (1092)
                      ...+..| ..+.+++|+ ++.+| ++++.|+.|++||+++        +.+...+. +...+.+++|+|++++|++++  
T Consensus       151 ~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~--------~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~  220 (391)
T 1l0q_A          151 INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT--------NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVD  220 (391)
T ss_dssp             EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT--------TEEEEEEE-CSSEEEEEEECTTSSEEEEEEEC
T ss_pred             EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC--------CeEEEEEe-cCCCccceEECCCCCEEEEEecC
Confidence            4555544 457999998 55566 6778899999999983        44555554 456789999999999988887  


Q ss_pred             -cCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEE-EEEecCCeEEEEEc
Q 001366         1026 -ESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMV-VAANSSGCIKVLQM 1091 (1092)
Q Consensus      1026 -~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~L-asgs~DG~V~vW~l 1091 (1092)
                       .++.|++||...++.+..+..              + ..+.+++|+|+++.| ++++.|+.|++|++
T Consensus       221 ~~~~~v~~~d~~~~~~~~~~~~--------------~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          221 KYFNTVSMIDTGTNKITARIPV--------------G-PDPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             SSCCEEEEEETTTTEEEEEEEC--------------C-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cCCCcEEEEECCCCeEEEEEec--------------C-CCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence             689999999998877766542              1 247899999999977 67788999999996

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.94  E-value=1.7e-27  Score=267.18  Aligned_cols=229  Identities=20%  Similarity=0.196  Sum_probs=160.0

Q ss_pred             hHHHh-h--hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhh-hhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVK-T--TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGA-MMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~-~--~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+. +  ..+|.|.||++...    ..+..++.|+....      ....++. .+.....|||++.+++........ 
T Consensus        18 ~y~~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~-   86 (299)
T 3m2w_A           18 DYKVTSQVLGLGINGKVLQIFNK----RTQEKFALKMLQDC------PKARREVELHWRASQCPHIVRIVDVYENLYAG-   86 (299)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECS------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT-
T ss_pred             chhhcCcccccCCCeEEEEEEEc----CCCcEEEEEEeccc------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCC-
Confidence            45554 2  44578999999752    22556666665221      1122222 233667999999876654320000 


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc---
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ---  364 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~---  364 (1092)
                          ...       ..++|||++|++|.+++...+ ..++..+++.++.||+.||.|||++||+||||||+||+++.   
T Consensus        87 ----~~~-------~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~  155 (299)
T 3m2w_A           87 ----RKC-------LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRP  155 (299)
T ss_dssp             ----EEE-------EEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSST
T ss_pred             ----Cce-------EEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCC
Confidence                000       113899999999999997754 46888899999999999999999999999999999999998   


Q ss_pred             CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcc
Q 001366          365 SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANES  444 (1092)
Q Consensus       365 ~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (1092)
                      ++.+|++|||+++...                                                                
T Consensus       156 ~~~~kl~Dfg~a~~~~----------------------------------------------------------------  171 (299)
T 3m2w_A          156 NAILKLTDFGFAKETT----------------------------------------------------------------  171 (299)
T ss_dssp             TCCEEECCCTTCEECT----------------------------------------------------------------
T ss_pred             CCcEEEeccccccccc----------------------------------------------------------------
Confidence            7889999999775422                                                                


Q ss_pred             ccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHH
Q 001366          445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       445 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~e  524 (1092)
                                                                                   +..++.++|||||||+|||
T Consensus       172 -------------------------------------------------------------~~~~~~~~DiwslG~il~e  190 (299)
T 3m2w_A          172 -------------------------------------------------------------GEKYDKSCDMWSLGVIMYI  190 (299)
T ss_dssp             -------------------------------------------------------------TCGGGGHHHHHHHHHHHHH
T ss_pred             -------------------------------------------------------------cccCCchhhHHHHHHHHHH
Confidence                                                                         1346789999999999999


Q ss_pred             HcCC---CCcHHHHHHHHHhccccCC------C-CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          525 LFGR---FDSERALAAAMSDLRDRIL------P-PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       525 ll~~---f~~~~~~~~~~~~~~~~~~------p-~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                      |+++   |......... ........      | +.+...++.+.+|+.+||++||.+|||+.|+|+||||....
T Consensus       191 l~tg~~pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~~~~~~  264 (299)
T 3m2w_A          191 LLCGYPPFYSNHGLAIS-PGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST  264 (299)
T ss_dssp             HHHSSCSCCC--------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTGG
T ss_pred             HHHCCCCCCCCcchhhh-HHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcChhhcccc
Confidence            9986   4333222211 11111111      1 11245678899999999999999999999999999998754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=1.9e-25  Score=256.75  Aligned_cols=241  Identities=11%  Similarity=0.128  Sum_probs=187.3

Q ss_pred             ecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEE-EEEeCCCcEEEEecCC
Q 001366          825 MSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKL-ASGSDDCSVKLWNINE  903 (1092)
Q Consensus       825 ~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~l-aSgs~Dg~I~iWDl~~  903 (1092)
                      ..|...|.+++|+|+ +.+|++|+.|+ ++|||+.+++.+.....  ..+..+++.+ +++.+ ++|+.|++|++||+.+
T Consensus        16 ~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLH-RTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             ---CCCCCEEEECTT-SSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECT-TSSEEEEECSSTTEEEEEETTT
T ss_pred             ccCCCceEEEEECCC-CCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcC-CCCEEEEEECCccEEEEEECCC
Confidence            458899999999998 88999988765 78999988776655432  2477888888 55555 6788899999999999


Q ss_pred             CceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEE--EECCCeEE
Q 001366          904 KNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVT--ASTDNKLK  981 (1092)
Q Consensus       904 ~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~S--gs~Dg~I~  981 (1092)
                      ++++..+.+...|.+++|+++.   ++++ .|+.|++||+.+....+..+..   ....+++++ ..++.  |+.||.|+
T Consensus        91 ~~~~~~~~~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~  162 (355)
T 3vu4_A           91 KQDVSRIKVDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIH  162 (355)
T ss_dssp             TEEEEEEECSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEEESSCTTCEE
T ss_pred             CcEEEEEECCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEeCCCcCcEEE
Confidence            9999999998999999999864   3333 4889999999987223333332   334445555 66665  57899999


Q ss_pred             EEEcCCCCCCCCCCC-------c-eeEEEcCCCCCeEEEEEecCCCEEEEEecCCc-EEEEeCCCCCceeeeeccccCCC
Q 001366          982 LWDLKRTSHTGPSTN-------A-CSLTFSGHTNEKNFVGLSTADGYIACGSESNE-VYAYHRSLPMPITSYKFGSIDPI 1052 (1092)
Q Consensus       982 vWDl~~~~~~~~~~~-------~-~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~-I~Iwd~~~~~~i~~~~~~~~~~i 1052 (1092)
                      +||+.+.........       . ++..+.+|...|++++|+|+|.+||+|+.|++ |+|||+.+++.+..+.       
T Consensus       163 iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~-------  235 (355)
T 3vu4_A          163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR-------  235 (355)
T ss_dssp             EEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE-------
T ss_pred             EEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-------
Confidence            999985321100000       1 26789999999999999999999999999998 9999999998887664       


Q ss_pred             CCccccCC-CCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1053 SGKETDDD-NGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1053 ~~~~~~~~-h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                            .+ |...|++++|+|++.+|++++.||.|+||++
T Consensus       236 ------~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          236 ------RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             ------CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             ------cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence                  23 7789999999999999999999999999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=1.8e-26  Score=269.17  Aligned_cols=243  Identities=8%  Similarity=-0.003  Sum_probs=171.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEec--------CCCCEEEEEEC
Q 001366          778 SANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNN--------YIKNYLASADY  849 (1092)
Q Consensus       778 h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--------~~~~~LaSgs~  849 (1092)
                      |...+....+.+++.+||+|+.|++|+|||......  ..........+|...|++|+|+|        + +++|||||.
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~--~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d-~~~las~s~  164 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETI--ITQHVLGGKSGHHNFVNDIDIADVYSADNRLA-EQVIASVGD  164 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEE--EEEEEECTTTSCSSCEEEEEEEEEECTTCSEE-EEEEEEEET
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcc--ceeeeecccCCCCCceEEEEEccccccccCCC-CCEEEEEEC
Confidence            333344444455677899999999999999875211  11111123457999999999997        4 789999999


Q ss_pred             CCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeE-------------------
Q 001366          850 DGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI-------------------  910 (1092)
Q Consensus       850 DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l-------------------  910 (1092)
                      |++|+|||+.++..+..+.+|...|.+++|+|.++.+|++|+.|++|++||+++++.....                   
T Consensus       165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            9999999999988888888899999999999955568999999999999999987643322                   


Q ss_pred             -------ecCCceEEEEEc-cCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeE-------------------EE
Q 001366          911 -------KNIANVCCVQFS-AHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVS-------------------YV  963 (1092)
Q Consensus       911 -------~~~~~V~sl~fs-p~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~-------------------~v  963 (1092)
                             .+...+.++.|+ |++ ..+++++.|+.+++||+..... ...+..|...+.                   .+
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC  322 (393)
T ss_dssp             C------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCE
T ss_pred             eeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEE
Confidence                   134568889987 666 5899999999999999986543 222333333222                   22


Q ss_pred             EEc-CCC-EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          964 KFL-DSG-TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       964 ~fs-~~~-~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      .+. .++ ++++|+.||+|+|||+.+        +.+...+.+|...|++++|+|||++||+++.+| +.+|.
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~--------~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYE--------KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR  386 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTC--------TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCC--------CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence            222 233 567788999999999984        455667778889999999999999999999877 55554

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.94  E-value=1.6e-28  Score=280.44  Aligned_cols=166  Identities=14%  Similarity=0.068  Sum_probs=129.1

Q ss_pred             cccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh-hcCccccCCCCCCeEEccCC-----------------
Q 001366          305 RQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHH-TQGVTFLDLKPSSFKLLQSN-----------------  366 (1092)
Q Consensus       305 ~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lH-s~gIvHrDLKP~Nill~~~~-----------------  366 (1092)
                      ++||||+||+|.+.+..  ..++..+++.|++||+.||+||| ++||+||||||+||||+.++                 
T Consensus       139 lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~  216 (336)
T 2vuw_A          139 IVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPS  216 (336)
T ss_dssp             EEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEEC
T ss_pred             EEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccC
Confidence            48999999987777754  35788899999999999999999 99999999999999999887                 


Q ss_pred             ---cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCc
Q 001366          367 ---QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANE  443 (1092)
Q Consensus       367 ---~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1092)
                         .+||+|||+++...+                                                              
T Consensus       217 ~~~~vkL~DFG~a~~~~~--------------------------------------------------------------  234 (336)
T 2vuw_A          217 CGLQVSIIDYTLSRLERD--------------------------------------------------------------  234 (336)
T ss_dssp             TTEEEEECCCTTCBEEET--------------------------------------------------------------
T ss_pred             CCceEEEeeccccEecCC--------------------------------------------------------------
Confidence               899999999876431                                                              


Q ss_pred             cccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH-H
Q 001366          444 SDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL-F  522 (1092)
Q Consensus       444 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl-l  522 (1092)
                                                                    ...+||+.|+|||++.+.. +.++||||||++ +
T Consensus       235 ----------------------------------------------~~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~  267 (336)
T 2vuw_A          235 ----------------------------------------------GIVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKEN  267 (336)
T ss_dssp             ----------------------------------------------TEEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------CcEEEeecccChhhhcCCC-ccceehhhhhCCCC
Confidence                                                          0347899999999998766 999999998777 7


Q ss_pred             HHHcCCCCcHHHHH---HHHHh-c---cccCC--CCCCCCCChhHHHHHHhccccCCCCCCCHHHHh-hhhhhh
Q 001366          523 FELFGRFDSERALA---AAMSD-L---RDRIL--PPSFLSENPKEAGFCLWQLHPEPLSRPTTREIL-QSEVTN  586 (1092)
Q Consensus       523 ~ell~~f~~~~~~~---~~~~~-~---~~~~~--p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL-~~~~~~  586 (1092)
                      +++++++.+.....   ..... .   .....  ++.+...++++.+||.+||++|     |++|+| +||||+
T Consensus       268 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d-----sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          268 NNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS-----SATDLLCQHSLFK  336 (336)
T ss_dssp             TTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS-----SHHHHHHHCGGGC
T ss_pred             cccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC-----CHHHHHhcCCCcC
Confidence            77887766654321   11111 1   11111  1112234677899999999976     999999 999984

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.94  E-value=5e-28  Score=302.64  Aligned_cols=242  Identities=20%  Similarity=0.213  Sum_probs=175.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+...+  +|+|+||++....   ..+..++.|++.............++..++...+||||+.++..........   
T Consensus        82 y~i~~~lg~G~~g~Vy~a~~~~---~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~---  155 (681)
T 2pzi_A           82 YEVKGCIAHGGLGWIYLALDRN---VNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHG---  155 (681)
T ss_dssp             EEEEEEEEEETTEEEEEEEEGG---GTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTS---
T ss_pred             eEEEEEEeeCCCeEEEEEEEcC---CCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCC---
Confidence            4454444  5889999997521   0144566665543333333345567777888899999999877655433210   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                         .+..     .++|||++|++|.+++..   .++..+++.|+.||+.||+|||++||+||||||+||||+. +.+||+
T Consensus       156 ---~~~~-----~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~-~~~kl~  223 (681)
T 2pzi_A          156 ---DPVG-----YIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTE-EQLKLI  223 (681)
T ss_dssp             ---CEEE-----EEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECS-SCEEEC
T ss_pred             ---Ccee-----EEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeC-CcEEEE
Confidence               0000     148999999999998865   5788899999999999999999999999999999999987 489999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++....                                                                      
T Consensus       224 DFG~a~~~~~----------------------------------------------------------------------  233 (681)
T 2pzi_A          224 DLGAVSRINS----------------------------------------------------------------------  233 (681)
T ss_dssp             CCTTCEETTC----------------------------------------------------------------------
T ss_pred             ecccchhccc----------------------------------------------------------------------
Confidence            9998876331                                                                      


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCCCCc
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDS  531 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~  531 (1092)
                                                           ....+||+.|+|||++.+. ++.++|||||||+||||++++.+
T Consensus       234 -------------------------------------~~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~  275 (681)
T 2pzi_A          234 -------------------------------------FGYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPT  275 (681)
T ss_dssp             -------------------------------------CSCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCE
T ss_pred             -------------------------------------CCccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCC
Confidence                                                 0145689999999998765 48999999999999999998665


Q ss_pred             HHHHHHHHHhccccCCCCC--CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          532 ERALAAAMSDLRDRILPPS--FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ...      ... ..++..  ....++.+.+||.+||++||.+||++.+.+.++|+...
T Consensus       276 ~~~------~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          276 RNG------RYV-DGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             ETT------EEC-SSCCTTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             Ccc------ccc-ccccccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence            432      011 111111  11234678899999999999999999999999987643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.7e-26  Score=258.58  Aligned_cols=223  Identities=11%  Similarity=0.061  Sum_probs=180.8

Q ss_pred             CCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecC---------CCceeeeEe
Q 001366          841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN---------EKNSLATIK  911 (1092)
Q Consensus       841 ~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~---------~~~~l~~l~  911 (1092)
                      +.+|++|+.||+|++||+.+++.+..+.  ...|.++.|+| .   +++|+.|++|++|+..         +++.+..+.
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~  121 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE  121 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence            6799999999999999999999888876  56788889988 3   9999999999999765         455455554


Q ss_pred             --cCCceEEEEEcc--CCCeEEEEEECCCeEEEEEcCCCCcceEEe-cCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEc
Q 001366          912 --NIANVCCVQFSA--HSSHLLAFGSADYRTYCYDLRNARAPWCVL-AGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDL  985 (1092)
Q Consensus       912 --~~~~V~sl~fsp--~~~~~latgs~Dg~I~vwDlr~~~~~~~~l-~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl  985 (1092)
                        +...|.+++|+|  ++. ++++|+.||.|++||+++++. .... ..|...|.+++|+ ++.+|++|+.||.|++||+
T Consensus       122 ~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~  199 (343)
T 3lrv_A          122 VDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL  199 (343)
T ss_dssp             CCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred             cCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence              446799999999  885 899999999999999998765 3444 4566689999999 6678999999999999999


Q ss_pred             CCCCCCCCCCCcee-EEEcC-CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCC
Q 001366          986 KRTSHTGPSTNACS-LTFSG-HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGL 1063 (1092)
Q Consensus       986 ~~~~~~~~~~~~~~-~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~ 1063 (1092)
                      ++.        ... ..+.+ |...|++++|+|+|.+|++|+ |+.|++||+..+..+..+..     .      ..|..
T Consensus       200 ~~~--------~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~-----~------~~~~~  259 (343)
T 3lrv_A          200 SSP--------DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT-----Y------TIPEF  259 (343)
T ss_dssp             SCT--------TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC-----C------BC---
T ss_pred             CCC--------CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc-----c------ccccc
Confidence            843        334 66777 999999999999999999999 45999999988776554320     0      11222


Q ss_pred             CE--EEEEEeCCCCEEEEEec-CCeEEEEEc
Q 001366         1064 FV--SSVCWRRRSDMVVAANS-SGCIKVLQM 1091 (1092)
Q Consensus      1064 ~V--~sva~spd~~~Lasgs~-DG~V~vW~l 1091 (1092)
                      .+  .+++|+|++.+|++++. |+.|+||++
T Consensus       260 ~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          260 KTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             --CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            23  57999999999999998 999999986

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=7.7e-25  Score=245.83  Aligned_cols=185  Identities=16%  Similarity=0.256  Sum_probs=149.0

Q ss_pred             CCEEEEEE--CCCcEEEEEC-CCCceEEEeeccCccEEEEEEecC--CCCEEEEEeCCCcEEEEecCCCceeeeEec---
Q 001366          841 KNYLASAD--YDGVVKLWDA-CTGQTVSHYIEHEKRAWSVDFSQV--HPTKLASGSDDCSVKLWNINEKNSLATIKN---  912 (1092)
Q Consensus       841 ~~~LaSgs--~DgtV~IWD~-~tg~~i~~l~~h~~~V~sv~fsp~--~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~---  912 (1092)
                      ++++.+++  .|++|++|++ .+|+.+..+.+|...+..++|++.  ++..|+|||.|++|+|||+.+++++.++..   
T Consensus       145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~  224 (356)
T 2w18_A          145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS  224 (356)
T ss_dssp             TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-
T ss_pred             CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc
Confidence            55555543  6999999999 558888999999999999999884  568999999999999999999999999973   


Q ss_pred             -CCceEEEEEccCCCeE-----------EEEEECCCeEEEEEcCCCCcceEEe-----cCCCCCeEEEEEcCCCEEEEEE
Q 001366          913 -IANVCCVQFSAHSSHL-----------LAFGSADYRTYCYDLRNARAPWCVL-----AGHEKAVSYVKFLDSGTLVTAS  975 (1092)
Q Consensus       913 -~~~V~sl~fsp~~~~~-----------latgs~Dg~I~vwDlr~~~~~~~~l-----~~H~~~V~~v~fs~~~~L~Sgs  975 (1092)
                       ...+++++|+|++..+           +++|+.|++|++||..+++. +.++     .+|...+.+..++ +..+++++
T Consensus       225 ~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS  302 (356)
T 2w18_A          225 YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK-DHCAAAIL  302 (356)
T ss_dssp             --CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE-TTEEEEEE
T ss_pred             ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC-CCEEEEEc
Confidence             2468889999998532           36788999999999988754 3332     4777666655554 77899999


Q ss_pred             CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeE-EEEEecCCCEEEEEecCCcEEEEeC
Q 001366          976 TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN-FVGLSTADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus       976 ~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~-~v~~spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                      .|++|+|||+.        ++.++.++.+|...+. +++|||||++|++|+.|++|+|||.
T Consensus       303 ~DgTIkIWDl~--------tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          303 TSGTIAIWDLL--------LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEETT--------TCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCcEEEEECC--------CCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999999998        5778999999988765 5899999999999999999999984

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=2.3e-23  Score=253.46  Aligned_cols=320  Identities=12%  Similarity=0.079  Sum_probs=243.2

Q ss_pred             EeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCCCCCcccccceeeec
Q 001366          749 GAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEF--NALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       749 ~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~--~~~~~~~~~~~~~~~~~~  826 (1092)
                      +...|+++.+|+....++...+..    ++.  +.+++|+|||++|++++.|++|.+||+  .+.        .......
T Consensus       154 s~~~d~~V~v~D~~t~~~~~~i~~----g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--------~~~~~i~  219 (543)
T 1nir_A          154 TLRDAGQIALVDGDSKKIVKVIDT----GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--------TKVAEIK  219 (543)
T ss_dssp             EEGGGTEEEEEETTTCCEEEEEEC----STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--------EEEEEEE
T ss_pred             EEcCCCeEEEEECCCceEEEEEec----Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC--------cEEEEEe
Confidence            456789999999988887766552    333  889999999999999999999999998  331        1112233


Q ss_pred             CCCCeEEEEEec----CCCCEEEEEE-CCCcEEEEECCCCceEEEeec----------cCc-cEEEEEEecCCCCEEEEE
Q 001366          827 NRSKLSCVCWNN----YIKNYLASAD-YDGVVKLWDACTGQTVSHYIE----------HEK-RAWSVDFSQVHPTKLASG  890 (1092)
Q Consensus       827 h~~~V~~v~~sp----~~~~~LaSgs-~DgtV~IWD~~tg~~i~~l~~----------h~~-~V~sv~fsp~~~~~laSg  890 (1092)
                      +...+.+++|+|    + +++|++++ .+++|.|||..+++++.++..          |.. .+.++.++|.++.++++.
T Consensus       220 ~g~~p~~va~sp~~~~d-g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          220 IGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             CCSEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             cCCCcceEEeCCCcCCC-CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence            456789999999    8 78888877 489999999999999888764          223 789999999666778888


Q ss_pred             eCCCcEEEEecCCCceee--eEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecC----CCCCeEEEE
Q 001366          891 SDDCSVKLWNINEKNSLA--TIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG----HEKAVSYVK  964 (1092)
Q Consensus       891 s~Dg~I~iWDl~~~~~l~--~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~----H~~~V~~v~  964 (1092)
                      ..++.|.+||+.+.+.+.  ++.+...+..+.|+|++..+++++..+++|.+||+.+++. +..+..    |......+.
T Consensus       299 ~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l-~~~i~~g~~ph~g~g~~~~  377 (543)
T 1nir_A          299 KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL-SALVDVGKTPHPGRGANFV  377 (543)
T ss_dssp             TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSBCCTTCEEEE
T ss_pred             CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE-EEeeccCCCCCCCCCcccC
Confidence            899999999999877655  5566677889999999976666667799999999998763 444442    654444443


Q ss_pred             EcCCC-EEEEEE-CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEe-------cCCcEEEEeC
Q 001366          965 FLDSG-TLVTAS-TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGS-------ESNEVYAYHR 1035 (1092)
Q Consensus       965 fs~~~-~L~Sgs-~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-------~Dg~I~Iwd~ 1035 (1092)
                      ..+++ .++|++ .|++|.|||+.+.... ....+++.++.+|...+.+|+++|+|++|++++       .+++|.|||+
T Consensus       378 ~p~~g~~~~s~~~~d~~V~v~d~~~~~~~-~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          378 HPKYGPVWSTSHLGDGSISLIGTDPKNHP-QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  456 (543)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCT-TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred             CCCCccEEEeccCCCceEEEEEeCCCCCc-hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence            23434 456665 5899999999852111 112678999999998999999999999999987       3779999999


Q ss_pred             CCCCce-eeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec-----CCeEEEEEc
Q 001366         1036 SLPMPI-TSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS-----SGCIKVLQM 1091 (1092)
Q Consensus      1036 ~~~~~i-~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~-----DG~V~vW~l 1091 (1092)
                      .+++.+ ..+..+.+.      -...+...|..++|+|+|+.|..+..     |+.|.|||.
T Consensus       457 ~~~~~~~~~~~v~~~~------~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          457 KNLDAKYQVLPIAEWA------DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             TCTTSCCEEECHHHHH------CCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             CCCCCCeEEeechhhc------ccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence            988866 333322111      11345678999999999999987743     799999984

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=1.1e-23  Score=246.89  Aligned_cols=274  Identities=11%  Similarity=0.121  Sum_probs=220.6

Q ss_pred             cCCCCcE--EeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccc
Q 001366          742 QNPTDRL--GAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVY  819 (1092)
Q Consensus       742 ~~~~~~l--~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~  819 (1092)
                      ++|++.+  ....|+.+.+|+....+.........+.+|...|.+++|++++.++++++.|+.|++||+...       .
T Consensus       130 ~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-------~  202 (433)
T 3bws_A          130 FIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-------A  202 (433)
T ss_dssp             ESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-------C
T ss_pred             EeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-------e
Confidence            3454444  334577899999987776654444456789999999999999999999999999999998652       1


Q ss_pred             cceeeecCCCCeEEEEEecCCCCEE-EEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEe-------
Q 001366          820 YPAVEMSNRSKLSCVCWNNYIKNYL-ASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGS-------  891 (1092)
Q Consensus       820 ~~~~~~~h~~~V~~v~~sp~~~~~L-aSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs-------  891 (1092)
                      .......|...+.+++|+|+ +..+ ++++.|++|++||+.+++.+..+..+ ..+.+++|+| ++..+++++       
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~-~g~~l~~~~~~~~~~~  279 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPI-RDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSK-DGKELYIAQFSASNQE  279 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETT-TTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECT-TSSEEEEEEEESCTTC
T ss_pred             EEEEEcCCCCCeeEEEEcCC-CCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcC-CCCEEEEEECCCCccc
Confidence            11223357889999999998 5555 56668999999999999988888754 4589999999 888888888       


Q ss_pred             -CCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCC
Q 001366          892 -DDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSG  969 (1092)
Q Consensus       892 -~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~  969 (1092)
                       .|+.|++||+++++.+..+.+...+.+++|+|++..++++++.|+.|++||+.+.+. ...+. +...+.+++|+ ++.
T Consensus       280 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~  357 (433)
T 3bws_A          280 SGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-QKSIP-VFDKPNTIALSPDGK  357 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSS
T ss_pred             cCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE-EEEec-CCCCCCeEEEcCCCC
Confidence             488999999999998888877778999999999987888889999999999997653 34443 67789999999 556


Q ss_pred             EEEEEEC---------------CCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEec-CCcEEEE
Q 001366          970 TLVTAST---------------DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE-SNEVYAY 1033 (1092)
Q Consensus       970 ~L~Sgs~---------------Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~I~Iw 1033 (1092)
                      +|++++.               ||.|++||+.        .+..+..+.. ...+.+++|+|+|++|++++. |+.|++|
T Consensus       358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~--------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~  428 (433)
T 3bws_A          358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT--------TDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVY  428 (433)
T ss_dssp             EEEEEECCCCCTTTCTTSCCSSCCEEEEEETT--------TTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             EEEEEecCCCccccccccccccceEEEEEECC--------CCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence            7887776               5799999998        3455666665 457899999999999988775 9999999


Q ss_pred             eCC
Q 001366         1034 HRS 1036 (1092)
Q Consensus      1034 d~~ 1036 (1092)
                      ++.
T Consensus       429 ~~~  431 (433)
T 3bws_A          429 RRD  431 (433)
T ss_dssp             EET
T ss_pred             Eec
Confidence            865

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=2.2e-22  Score=225.92  Aligned_cols=275  Identities=10%  Similarity=0.001  Sum_probs=186.9

Q ss_pred             CEEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE-EE
Q 001366          781 VICSISFDRDED---HFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK-LW  856 (1092)
Q Consensus       781 ~V~sl~fspdg~---~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~-IW  856 (1092)
                      .|+++.|-.-|-   .+++++. ..|++|+....    ...........|..+|..|.+.|+..+++..+=..=.++ ++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~  115 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDA----WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIR  115 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSS----SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEE
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCC----ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceE
Confidence            356666655443   6777774 58999998752    122334455677889999999997555554443221111 22


Q ss_pred             ECC--C-----CceEEEeeccCccEEEEEEecCCCCEEEEEe--CCCcEEEEecC-CCceeeeEe-cCCceEEEEEcc--
Q 001366          857 DAC--T-----GQTVSHYIEHEKRAWSVDFSQVHPTKLASGS--DDCSVKLWNIN-EKNSLATIK-NIANVCCVQFSA--  923 (1092)
Q Consensus       857 D~~--t-----g~~i~~l~~h~~~V~sv~fsp~~~~~laSgs--~Dg~I~iWDl~-~~~~l~~l~-~~~~V~sl~fsp--  923 (1092)
                      -+.  .     ++.+.. .+|...|+++   + +++++.+++  .|+.|++|++. +++.+..+. +...+..++|+|  
T Consensus       116 sla~spd~~~~~~~l~s-~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~  190 (356)
T 2w18_A          116 ALFCSSDDESEKQVLLK-SGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ  190 (356)
T ss_dssp             EECC------CCEEEEE-EEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred             EEEECCCccccccEEEe-CCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence            211  1     122222 4566667665   4 565555544  59999999994 477777665 667788888888  


Q ss_pred             -CCCeEEEEEECCCeEEEEEcCCCCcceEEecCCC---CCeEEEEEcC-CCEE------------EEEECCCeEEEEEcC
Q 001366          924 -HSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHE---KAVSYVKFLD-SGTL------------VTASTDNKLKLWDLK  986 (1092)
Q Consensus       924 -~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~---~~V~~v~fs~-~~~L------------~Sgs~Dg~I~vWDl~  986 (1092)
                       ++ .+|++|+.|++|+|||+.+++. +.++.+|.   ..|.+++|++ +.++            ++|+.|++|++||..
T Consensus       191 g~~-~~LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~  268 (356)
T 2w18_A          191 GMQ-EALLGTTIMNNIVIWNLKTGQL-LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK  268 (356)
T ss_dssp             TST-TEEEEEETTSEEEEEETTTCCE-EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred             CCC-ceEEEecCCCcEEEEECCCCcE-EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence             55 4999999999999999998864 56676543   3677788984 4443            678899999999998


Q ss_pred             CCCCCCCCCCceeEEE-----cCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCC
Q 001366          987 RTSHTGPSTNACSLTF-----SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDN 1061 (1092)
Q Consensus       987 ~~~~~~~~~~~~~~~l-----~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h 1061 (1092)
                      +        +.++..+     .+|...+.+..+  ++.++|+|+.|++|+|||+.+++.+.++.              +|
T Consensus       269 t--------gk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~--------------gH  324 (356)
T 2w18_A          269 T--------TLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLP--------------PV  324 (356)
T ss_dssp             T--------TEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEEC--------------CC
T ss_pred             C--------CEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEec--------------CC
Confidence            3        4444444     467666544444  48899999999999999999999887653              45


Q ss_pred             CCC-EEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1062 GLF-VSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1062 ~~~-V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ... +.+++|+|||++|+||+.|++|+||++
T Consensus       325 ~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          325 SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            444 456899999999999999999999996

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.91  E-value=1.9e-25  Score=249.39  Aligned_cols=215  Identities=11%  Similarity=0.045  Sum_probs=154.8

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCch--hhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.+  +|.|.||++...    ..+..++.|++.......  ......++...+...+|||++.+++....+...+ 
T Consensus        33 y~i~~~lg~G~~g~Vy~a~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~-  107 (286)
T 3uqc_A           33 YRLLIFHGGVPPLQFWQALDT----ALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGL-  107 (286)
T ss_dssp             EEEEEEEEBSTTCEEEEEEET----TTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE-
T ss_pred             EEEEEEEcccCCeEEEEEEec----CCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEE-
Confidence            4444444  478999999863    235566777664433221  2234456666778889999999887765543333 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     ++|||++|++|.++++..   ....++..|+.||+.||+|||++||+||||||+||||+.+|.+|
T Consensus       108 ---------------lv~e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~k  169 (286)
T 3uqc_A          108 ---------------VVAEWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVV  169 (286)
T ss_dssp             ---------------EEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEE
T ss_pred             ---------------EEEEecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEE
Confidence                           389999999999999643   34557899999999999999999999999999999999999998


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      +++++                                                                           
T Consensus       170 l~~~~---------------------------------------------------------------------------  174 (286)
T 3uqc_A          170 LAYPA---------------------------------------------------------------------------  174 (286)
T ss_dssp             ECSCC---------------------------------------------------------------------------
T ss_pred             EEecc---------------------------------------------------------------------------
Confidence            85321                                                                           


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                                      |++|       ++.++|||||||+||||+++ 
T Consensus       175 ------------------------------------------------~~~~-------~~~~~Di~slG~il~elltg~  199 (286)
T 3uqc_A          175 ------------------------------------------------TMPD-------ANPQDDIRGIGASLYALLVNR  199 (286)
T ss_dssp             ------------------------------------------------CCTT-------CCHHHHHHHHHHHHHHHHHSE
T ss_pred             ------------------------------------------------ccCC-------CCchhHHHHHHHHHHHHHHCC
Confidence                                                            4443       78999999999999999986 


Q ss_pred             --CCcHHHHHH---HHHhccccCCCC--CCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 --FDSERALAA---AMSDLRDRILPP--SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 --f~~~~~~~~---~~~~~~~~~~p~--~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                        |........   .+..+.....++  .....++.+.+|+.+||++||.+| |+.|+++.
T Consensus       200 ~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~  259 (286)
T 3uqc_A          200 WPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNL  259 (286)
T ss_dssp             ECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHH
T ss_pred             CCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHH
Confidence              544322110   011111111111  124567889999999999999999 99999884

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=9.5e-22  Score=231.13  Aligned_cols=279  Identities=11%  Similarity=0.072  Sum_probs=211.5

Q ss_pred             eEEEEEc--ccceEEeeEEeeeecCCCCCEEEEEEcC--------------CCCEEEEEeCC------CcEEEEEcCCCC
Q 001366          755 LCKYARY--SKFEVQGMLRTGEFNNSANVICSISFDR--------------DEDHFAAAGVS------KKIKIFEFNALF  812 (1092)
Q Consensus       755 ~~k~w~~--~~~~~~~~l~~~~l~~h~~~V~sl~fsp--------------dg~~latgg~D------~~I~Iwd~~~~~  812 (1092)
                      .+++|+.  .+.+...   ...+.+|...+..+++++              .+..++.++.+      +.|++||+... 
T Consensus        94 ~i~lwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-  169 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLA---QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-  169 (415)
T ss_dssp             EEEEEECSSSTTCEEE---EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-
T ss_pred             EEEEEeCCCCCCCEEe---eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-
Confidence            8999998  6655332   223557777777777664              26677766654      79999998641 


Q ss_pred             CCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC---cEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEE-
Q 001366          813 NDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG---VVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLA-  888 (1092)
Q Consensus       813 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg---tV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~la-  888 (1092)
                             .......|...|.+++|+|+ ++.|++++.|+   +|++||+.+++.. .+..|...+.+++|+| +++.|+ 
T Consensus       170 -------~~~~l~~~~~~v~~~~~Spd-g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp-dg~~la~  239 (415)
T 2hqs_A          170 -------NQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DGSKLAF  239 (415)
T ss_dssp             -------SCEEEEEESSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TSSEEEE
T ss_pred             -------CCEEEeCCCCcceeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC-CCCEEEE
Confidence                   22344567889999999998 88999999885   9999999998875 5667888999999999 888776 


Q ss_pred             EEeCCCc--EEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEEC-CC--eEEEEEcCCCCcceEEecCCCCCeEEE
Q 001366          889 SGSDDCS--VKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSA-DY--RTYCYDLRNARAPWCVLAGHEKAVSYV  963 (1092)
Q Consensus       889 Sgs~Dg~--I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~-Dg--~I~vwDlr~~~~~~~~l~~H~~~V~~v  963 (1092)
                      +++.|+.  |.+||+.+++......+...+.+++|+|+|. .|++++. ++  .|++||+.+++  ...+..|...+.++
T Consensus       240 ~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~  316 (415)
T 2hqs_A          240 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDA  316 (415)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEE
T ss_pred             EEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCe
Confidence            7776665  9999999887654444677899999999996 5666665 45  68888988765  34556677889999


Q ss_pred             EEc-CCCEEEEEECC---CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCC---cEEEEeCC
Q 001366          964 KFL-DSGTLVTASTD---NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESN---EVYAYHRS 1036 (1092)
Q Consensus       964 ~fs-~~~~L~Sgs~D---g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg---~I~Iwd~~ 1036 (1092)
                      +|+ ++++|++++.+   ..|.+||+.+.        .+ ..+..|. .+.+++|+|+|++|++++.++   .|++||+.
T Consensus       317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~--------~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          317 DVSSDGKFMVMVSSNGGQQHIAKQDLATG--------GV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEEETTTC--------CE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             EECCCCCEEEEEECcCCceEEEEEECCCC--------CE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            999 66778877764   58999999842        22 4455554 889999999999999988777   79999986


Q ss_pred             CCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCC
Q 001366         1037 LPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD 1075 (1092)
Q Consensus      1037 ~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~ 1075 (1092)
                      .+. +..              ...|...|.+++|+|.-.
T Consensus       387 g~~-~~~--------------l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          387 GRF-KAR--------------LPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             SCC-EEE--------------CCCSSSEEEEEEECCCCC
T ss_pred             CCc-EEE--------------eeCCCCCCcCCccccccc
Confidence            432 222              245678899999999643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=1.5e-21  Score=229.53  Aligned_cols=277  Identities=11%  Similarity=0.031  Sum_probs=207.6

Q ss_pred             CEEEEEEcCCCC-EEEEEe----CCC----cEEEEEc--CCCCCCCcccccceeeecCCCCeEEEEEecC----------
Q 001366          781 VICSISFDRDED-HFAAAG----VSK----KIKIFEF--NALFNDSVDVYYPAVEMSNRSKLSCVCWNNY----------  839 (1092)
Q Consensus       781 ~V~sl~fspdg~-~latgg----~D~----~I~Iwd~--~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~----------  839 (1092)
                      .|...+|.+.|. ++++|+    .||    +|+|||+  .+..     ........+|...+..+++++.          
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~  138 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT-----VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGI  138 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTC-----EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCC-----EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCC
Confidence            455567777764 666776    357    8999998  5421     1111234456666766666531          


Q ss_pred             ---CCCEEEEEECC------CcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCC---cEEEEecCCCcee
Q 001366          840 ---IKNYLASADYD------GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC---SVKLWNINEKNSL  907 (1092)
Q Consensus       840 ---~~~~LaSgs~D------gtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg---~I~iWDl~~~~~l  907 (1092)
                         .+..++.++.+      ++|++||+. +.....+.+|...+.+++|+| +++.|++++.|+   .|++||+.++++.
T Consensus       139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~  216 (415)
T 2hqs_A          139 KGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVR  216 (415)
T ss_dssp             CCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred             CCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEE
Confidence               04456666554      799999997 455677788999999999999 899999999885   9999999999887


Q ss_pred             eeEecCCceEEEEEccCCCeEEEEEECCCe--EEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEEC-CC--eEE
Q 001366          908 ATIKNIANVCCVQFSAHSSHLLAFGSADYR--TYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTAST-DN--KLK  981 (1092)
Q Consensus       908 ~~l~~~~~V~sl~fsp~~~~~latgs~Dg~--I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~-Dg--~I~  981 (1092)
                      ....+...+.+++|+|+|..++++++.++.  |++||+.+++  ...+..|...+.+++|+ ++.+|++++. ++  .|.
T Consensus       217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~  294 (415)
T 2hqs_A          217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY  294 (415)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence            655577789999999999755557776654  9999998765  35677888999999999 6667887776 44  677


Q ss_pred             EEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecC---CcEEEEeCCCCCceeeeeccccCCCCCcccc
Q 001366          982 LWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSES---NEVYAYHRSLPMPITSYKFGSIDPISGKETD 1058 (1092)
Q Consensus       982 vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D---g~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~ 1058 (1092)
                      +||+.+.        . ...+..|...+..++|+|+|++|++++.+   ..|++||..+++... +              
T Consensus       295 ~~d~~~~--------~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l--------------  350 (415)
T 2hqs_A          295 KVNINGG--------A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L--------------  350 (415)
T ss_dssp             EEETTSS--------C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-C--------------
T ss_pred             EEECCCC--------C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-e--------------
Confidence            7788732        2 34455567788899999999999988864   589999998776422 1              


Q ss_pred             CCCCCCEEEEEEeCCCCEEEEEecCC---eEEEEEc
Q 001366         1059 DDNGLFVSSVCWRRRSDMVVAANSSG---CIKVLQM 1091 (1092)
Q Consensus      1059 ~~h~~~V~sva~spd~~~Lasgs~DG---~V~vW~l 1091 (1092)
                      ..+. .+.+++|+|++++|++++.++   .|++|++
T Consensus       351 ~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          351 SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence            1222 689999999999999988877   7899885

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.89  E-value=2.2e-24  Score=262.93  Aligned_cols=193  Identities=12%  Similarity=-0.057  Sum_probs=131.7

Q ss_pred             hhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHH
Q 001366          260 AAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQI  338 (1092)
Q Consensus       260 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qi  338 (1092)
                      .+++..|... .|+|++.+++....+...++                +||||+|++|.++|+..+. ++.   ..|++||
T Consensus       289 ~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yL----------------VMEyv~G~~L~d~i~~~~~-l~~---~~I~~QI  348 (569)
T 4azs_A          289 HNEIKFLTQPPAGFDAPAVLAHGENAQSGWL----------------VMEKLPGRLLSDMLAAGEE-IDR---EKILGSL  348 (569)
T ss_dssp             HHHHHHHHSCCTTCCCCCEEEEEECSSEEEE----------------EEECCCSEEHHHHHHTTCC-CCH---HHHHHHH
T ss_pred             HHHHHHHHhcCCCCCeeEEEEEEEECCEEEE----------------EEecCCCCcHHHHHHhCCC-CCH---HHHHHHH
Confidence            4456667776 79999999888876666663                9999999999999987754 444   3589999


Q ss_pred             HHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccc
Q 001366          339 VALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFN  418 (1092)
Q Consensus       339 l~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (1092)
                      ++||+|||++|||||||||+||||+.+|.+||+|||+++......                                   
T Consensus       349 l~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~-----------------------------------  393 (569)
T 4azs_A          349 LRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC-----------------------------------  393 (569)
T ss_dssp             HHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC--------------------------------------
T ss_pred             HHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC-----------------------------------
Confidence            999999999999999999999999999999999999998644100                                   


Q ss_pred             cCcccccccccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccc
Q 001366          419 HNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWY  498 (1092)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  498 (1092)
                                                                                          ...++.+||++|
T Consensus       394 --------------------------------------------------------------------~~~~t~vGTp~Y  405 (569)
T 4azs_A          394 --------------------------------------------------------------------SWPTNLVQSFFV  405 (569)
T ss_dssp             --------------------------------------------------------------------CCSHHHHHHHHH
T ss_pred             --------------------------------------------------------------------ccccCceechhh
Confidence                                                                                011257899999


Q ss_pred             cCcccccCCCCCccccchhhhHHHHHHcCCCCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHH
Q 001366          499 ASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTRE  578 (1092)
Q Consensus       499 ~aPE~l~~~~~t~~sDIwSLGvll~ell~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e  578 (1092)
                      ||||++.+ .+..++|+||+|+++++|++++....      ..+..  .|+.    ...+..+...++..+|..||....
T Consensus       406 mAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~~------~~l~~--~~~~----~~~~~~l~~~l~~~~~~~~~~~~~  472 (569)
T 4azs_A          406 FVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNWL------YAVWQ--EPVE----RWNFVLLLALFEKKAKLPSAEQQR  472 (569)
T ss_dssp             HHHHHC------------------CCCCTTHHHHH------HHHHT--SCGG----GCSHHHHHHHHHTGGGSCCGGGSS
T ss_pred             ccHHHhCC-CCCCcccccccccchhhhccccchhH------HHhhc--CCCC----CCcHHHHHHHHhCCCCCCCCChhh
Confidence            99999976 46788999999999999987632221      11111  1111    122456777778888888888888


Q ss_pred             Hhhhhhhhhh
Q 001366          579 ILQSEVTNEF  588 (1092)
Q Consensus       579 iL~~~~~~~~  588 (1092)
                      ...++|....
T Consensus       473 ~~~~~~~~~~  482 (569)
T 4azs_A          473 GATEQWIIAQ  482 (569)
T ss_dssp             CCHHHHHHHH
T ss_pred             hccchhHHHH
Confidence            8788776543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=5e-21  Score=209.72  Aligned_cols=258  Identities=10%  Similarity=0.040  Sum_probs=195.9

Q ss_pred             EEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC-CceEEEeeccC-cc
Q 001366          796 AAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT-GQTVSHYIEHE-KR  873 (1092)
Q Consensus       796 tgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t-g~~i~~l~~h~-~~  873 (1092)
                      +++.|++|++||+...        .......|...|.+++|+|+ +++|++++ ++.|++||+.+ ++....+..|. ..
T Consensus        17 ~~~~~~~i~~~d~~~~--------~~~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~   86 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR--------KMRVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATIC   86 (297)
T ss_dssp             -CCCCEEEEEEETTTT--------EEEEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred             CCCcceeEEEEeCCCC--------ceeeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeCCCCCCceEecccccccc
Confidence            4567899999998652        12234457889999999998 88888876 88999999999 88777666663 67


Q ss_pred             EEEEEEecCCCCEEEEEe--CCCcEEEEec--CCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc
Q 001366          874 AWSVDFSQVHPTKLASGS--DDCSVKLWNI--NEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP  949 (1092)
Q Consensus       874 V~sv~fsp~~~~~laSgs--~Dg~I~iWDl--~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~  949 (1092)
                      +.+++|+| ++..|++++  .++.++||.+  .++. ...+.....+.+++|+|++..++++++.++.+++|++......
T Consensus        87 ~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~  164 (297)
T 2ojh_A           87 NNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV  164 (297)
T ss_dssp             CSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence            89999999 889999998  3455666655  4443 4455555569999999999766668889999999997543334


Q ss_pred             eEEecCCCCCeEEEEEc-CCCEEEEEE-CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecC
Q 001366          950 WCVLAGHEKAVSYVKFL-DSGTLVTAS-TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSES 1027 (1092)
Q Consensus       950 ~~~l~~H~~~V~~v~fs-~~~~L~Sgs-~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D 1027 (1092)
                      ...+..|...+.++.|+ ++..|+.++ .++.++||++..       .......+..|...+..++|+|+|++|++++.+
T Consensus       165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV-------DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET-------TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred             ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC-------CCCCcEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence            56677788899999998 566676655 589999999862       123456677788889999999999999888865


Q ss_pred             -----------CcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCC
Q 001366         1028 -----------NEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSG 1084 (1092)
Q Consensus      1028 -----------g~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG 1084 (1092)
                                 +.|++||...++......+            .+|...|.+++|+|+++.|++++.+.
T Consensus       238 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------------~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          238 ADVFDHPRDLDVRVQLMDMDGGNVETLFDL------------FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TTCCSCCSSEEEEEEEEETTSCSCEEEEEE------------EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCCcccccCceEEEEEecCCCCceeeecc------------CCCCcccccceECCCCCEEEEEEecc
Confidence                       5699999987765433221            23456788899999999999887653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.87  E-value=2.4e-20  Score=226.76  Aligned_cols=273  Identities=10%  Similarity=0.017  Sum_probs=210.6

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEEC--CCCce
Q 001366          786 SFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDA--CTGQT  863 (1092)
Q Consensus       786 ~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~--~tg~~  863 (1092)
                      +|+|++.++++++.|++|.+||..+..       .......+ ..+.+++|+|+ +++|++++.|++|++||+  .++++
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~-------~~~~i~~g-~~~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKK-------IVKVIDTG-YAVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTK  214 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCC-------EEEEEECS-TTEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCce-------EEEEEecC-cccceEEECCC-CCEEEEECCCCeEEEEECcCCCCcE
Confidence            378999999999999999999986521       11111112 23889999998 899999999999999999  88998


Q ss_pred             EEEeeccCccEEEEEEecC---CCCEEEEEe-CCCcEEEEecCCCceeeeEec------------CCceEEEEEccCCCe
Q 001366          864 VSHYIEHEKRAWSVDFSQV---HPTKLASGS-DDCSVKLWNINEKNSLATIKN------------IANVCCVQFSAHSSH  927 (1092)
Q Consensus       864 i~~l~~h~~~V~sv~fsp~---~~~~laSgs-~Dg~I~iWDl~~~~~l~~l~~------------~~~V~sl~fsp~~~~  927 (1092)
                      +.++. +...+..++|+|.   +++++++++ .+++|.+||..+++++.++..            ...+.++.++|++..
T Consensus       215 ~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~  293 (543)
T 1nir_A          215 VAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE  293 (543)
T ss_dssp             EEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred             EEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence            88887 4556799999982   467777776 589999999999999888863            126889999999888


Q ss_pred             EEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEE-ECCCeEEEEEcCCCCCCCCCCCceeEEEcC-
Q 001366          928 LLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTA-STDNKLKLWDLKRTSHTGPSTNACSLTFSG- 1004 (1092)
Q Consensus       928 ~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sg-s~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~- 1004 (1092)
                      ++++...++.|.+||+.+.+........+...+..+.|+ ++++|+++ ..+++|.+||+.        ++.++..+.. 
T Consensus       294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~--------tg~l~~~i~~g  365 (543)
T 1nir_A          294 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK--------DRRLSALVDVG  365 (543)
T ss_dssp             EEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT--------TTEEEEEEECS
T ss_pred             EEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECC--------CCeEEEeeccC
Confidence            888889999999999987654332223466778899999 56666655 468999999998        4556666653 


Q ss_pred             ---CCCCeEEEEEecC-CCEEEEEe-cCCcEEEEeCCC-------CCceeeeeccccCCCCCccccCCCCCCEEEEEEeC
Q 001366         1005 ---HTNEKNFVGLSTA-DGYIACGS-ESNEVYAYHRSL-------PMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR 1072 (1092)
Q Consensus      1005 ---h~~~V~~v~~spd-g~~lasgs-~Dg~I~Iwd~~~-------~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp 1072 (1092)
                         |......+ ++|+ +.++++++ .|++|.+|+...       .+.+.++.              .|+..+..|+|+|
T Consensus       366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~--------------~~g~~~~~v~~~p  430 (543)
T 1nir_A          366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ--------------GQGGGSLFIKTHP  430 (543)
T ss_dssp             SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE--------------CSCSCCCCEECCT
T ss_pred             CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE--------------cCCCCceEEEcCC
Confidence               55443333 5787 55677775 689999999987       55555443              4556778899999


Q ss_pred             CCCEEEEEe-------cCCeEEEEEc
Q 001366         1073 RSDMVVAAN-------SSGCIKVLQM 1091 (1092)
Q Consensus      1073 d~~~Lasgs-------~DG~V~vW~l 1091 (1092)
                      ++++|++++       .+++|.|||+
T Consensus       431 dg~~l~v~~~~~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          431 KSSHLYVDTTFNPDARISQSVAVFDL  456 (543)
T ss_dssp             TCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred             CCCcEEEecCCCCCcccCceEEEEEC
Confidence            999999987       3789999996

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=9e-20  Score=205.40  Aligned_cols=283  Identities=8%  Similarity=0.058  Sum_probs=198.1

Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEEC-CCcEEEEECCCCce
Q 001366          786 SFDRDED-HFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADY-DGVVKLWDACTGQT  863 (1092)
Q Consensus       786 ~fspdg~-~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~-DgtV~IWD~~tg~~  863 (1092)
                      .|.+++. .+++++.++.|.+||..+..       .......+...+ +++|+|+ ++++++++. ++.|.+||+.+++.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~-------~~~~~~~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~   74 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLE-------ILNQITLGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIETQLEPP   74 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCC-------EEEEEECCCCEE-EEEECSS-SCEEEEEESTTCEEEEEECSSSSC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccc-------eeeeEEccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEECCCCce
Confidence            4566555 47788889999999987521       111122335556 9999998 665555554 89999999999987


Q ss_pred             -EEEeeccCccEEEEEEecCCCCEEEEEeCCC---cEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCe-E
Q 001366          864 -VSHYIEHEKRAWSVDFSQVHPTKLASGSDDC---SVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYR-T  938 (1092)
Q Consensus       864 -i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg---~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~-I  938 (1092)
                       ...+..+..+..+++|+| ++++++++..++   .|.+||+.+++.+..+.....+.+++|+|++..+++++..++. |
T Consensus        75 ~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i  153 (331)
T 3u4y_A           75 KVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTV  153 (331)
T ss_dssp             EEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred             eEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceE
Confidence             777777777666699999 888888555553   8999999999999888887888999999999767777777788 9


Q ss_pred             EEEEcCCCCcce---EEecCCCCCeEEEEEc-CCCEEE-EEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEE
Q 001366          939 YCYDLRNARAPW---CVLAGHEKAVSYVKFL-DSGTLV-TASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVG 1013 (1092)
Q Consensus       939 ~vwDlr~~~~~~---~~l~~H~~~V~~v~fs-~~~~L~-Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~ 1013 (1092)
                      .+|++.......   .....+...+..++|+ ++++++ ++..++.|.+||+.+...     ...+..+..+ ..+..++
T Consensus       154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-----~~~~~~~~~~-~~~~~~~  227 (331)
T 3u4y_A          154 RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-----ITLLNAVGTN-NLPGTIV  227 (331)
T ss_dssp             EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-----CEEEEEEECS-SCCCCEE
T ss_pred             EEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-----cceeeeccCC-CCCceEE
Confidence            999998543321   1112334568999999 555554 455689999999984321     0115555543 5677899


Q ss_pred             EecCCCEEEEEe-cCCcEEEEeCCCCCc--eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec-CCeEEEE
Q 001366         1014 LSTADGYIACGS-ESNEVYAYHRSLPMP--ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS-SGCIKVL 1089 (1092)
Q Consensus      1014 ~spdg~~lasgs-~Dg~I~Iwd~~~~~~--i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~-DG~V~vW 1089 (1092)
                      |+|+|++|+.++ .++.|.+||..+++.  +..+..+  -....     .....+.+++|+|++++|++++. ++.|.||
T Consensus       228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  300 (331)
T 3u4y_A          228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG--LLIDP-----RPLFGANQMALNKTETKLFISANISRELKVF  300 (331)
T ss_dssp             ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC--CCCCC-----GGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc--cccCC-----CCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence            999999766554 578899999988776  3332210  00001     11122367899999998876655 5799999


Q ss_pred             Ec
Q 001366         1090 QM 1091 (1092)
Q Consensus      1090 ~l 1091 (1092)
                      ++
T Consensus       301 d~  302 (331)
T 3u4y_A          301 TI  302 (331)
T ss_dssp             ET
T ss_pred             Ee
Confidence            96

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=9.5e-20  Score=205.07  Aligned_cols=272  Identities=11%  Similarity=0.098  Sum_probs=187.8

Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC-CcEEEEECC--CCc--eEEEe
Q 001366          793 HFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD-GVVKLWDAC--TGQ--TVSHY  867 (1092)
Q Consensus       793 ~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D-gtV~IWD~~--tg~--~i~~l  867 (1092)
                      ++++++.|+.|++|++...  .   .........+...+.+++|+|+ +++|++++.+ +.|++|++.  +++  .+..+
T Consensus         7 l~~~~~~~~~v~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHE--G---ALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   80 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTT--S---CEEEEEEEECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEeCCCCCeEEEEEECCC--C---cEEEeeeEecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence            4555578999999998631  1   0112233456778999999998 8888888876 999999997  554  34455


Q ss_pred             eccCccEEEEEEecCCCCEEEEEe-CCCcEEEEec---CCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEc
Q 001366          868 IEHEKRAWSVDFSQVHPTKLASGS-DDCSVKLWNI---NEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDL  943 (1092)
Q Consensus       868 ~~h~~~V~sv~fsp~~~~~laSgs-~Dg~I~iWDl---~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDl  943 (1092)
                      ..+. .+.+++|+| ++..|++++ .++.|.+||+   .+.+.+..+.....+.+++|+|++..+++++..++.|++||+
T Consensus        81 ~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  158 (343)
T 1ri6_A           81 ALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  158 (343)
T ss_dssp             ECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence            5444 788999999 777666555 5889999999   444555566666779999999999744444448999999999


Q ss_pred             CC-CCcc-eE--Eec-CCCCCeEEEEEc-CCCEEEEE-ECCCeEEEEEcCCCCCCCCCCCceeEEEc----CC--CCCeE
Q 001366          944 RN-ARAP-WC--VLA-GHEKAVSYVKFL-DSGTLVTA-STDNKLKLWDLKRTSHTGPSTNACSLTFS----GH--TNEKN 1010 (1092)
Q Consensus       944 r~-~~~~-~~--~l~-~H~~~V~~v~fs-~~~~L~Sg-s~Dg~I~vWDl~~~~~~~~~~~~~~~~l~----~h--~~~V~ 1010 (1092)
                      .+ ++.. ..  ... .....+..++|+ ++.+++.+ ..++.|.+||+.....    .......+.    ++  ...+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~  234 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG----NIECVQTLDMMPENFSDTRWAA  234 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS----CCEEEEEEECSCTTCCSCCCEE
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC----cEEEEeeccccCccccccCCcc
Confidence            87 4321 11  222 234578899998 55556554 4889999999963111    011122222    11  33567


Q ss_pred             EEEEecCCCEEE-EEecCCcEEEEeCCC--CC--ceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEe-cCC
Q 001366         1011 FVGLSTADGYIA-CGSESNEVYAYHRSL--PM--PITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAAN-SSG 1084 (1092)
Q Consensus      1011 ~v~~spdg~~la-sgs~Dg~I~Iwd~~~--~~--~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs-~DG 1084 (1092)
                      .++|+|+|++|+ +++.++.|.+|++..  +.  .+..+.              .+. .+.+++|+|++++|++++ .++
T Consensus       235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--------------~~~-~~~~~~~s~dg~~l~~~~~~~~  299 (343)
T 1ri6_A          235 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--------------TET-QPRGFNVDHSGKYLIAAGQKSH  299 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--------------CSS-SCCCEEECTTSSEEEEECTTTC
T ss_pred             ceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--------------CCC-ccceEEECCCCCEEEEecCCCC
Confidence            899999998776 455799999999873  22  222221              122 278899999999988888 689


Q ss_pred             eEEEEEc
Q 001366         1085 CIKVLQM 1091 (1092)
Q Consensus      1085 ~V~vW~l 1091 (1092)
                      .|.||++
T Consensus       300 ~v~v~~~  306 (343)
T 1ri6_A          300 HISVYEI  306 (343)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            9999964

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=4e-19  Score=201.31  Aligned_cols=268  Identities=9%  Similarity=0.034  Sum_probs=201.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          780 NVICSISFDRDEDHFAAAGV-------SKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       780 ~~V~sl~fspdg~~latgg~-------D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      ..+..++|+|+|+++++++.       ++.|.+||..+..        ..........+.+++|+|+++.+++++..++.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--------VTQAIHNDLKPFGATINNTTQTLWFGNTVNSA  112 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--------EEEEEEESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--------EEEEEecCCCcceEEECCCCCEEEEEecCCCE
Confidence            45778999999998888774       5689999986521        11111223457889999983335566666899


Q ss_pred             EEEEECCCCceEEEeeccCcc---------EEEEEEecCCCCEEEEEe--CCCcEEEEecCCCceeeeEe-cCCceEEEE
Q 001366          853 VKLWDACTGQTVSHYIEHEKR---------AWSVDFSQVHPTKLASGS--DDCSVKLWNINEKNSLATIK-NIANVCCVQ  920 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~h~~~---------V~sv~fsp~~~~~laSgs--~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~  920 (1092)
                      |.+||..+++.+..+..+...         +.+++|+| +++.+++++  .++.|.+||+.+++.+..+. ....+.+++
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  191 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA  191 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence            999999999988888765422         78999999 777666655  58899999999999988888 556689999


Q ss_pred             EccCCCeEEEEEECCCeEEEEEcCCCCcceEEec----CCCCCeEEEEEc-CCCEEEEEEC-CCeEEEEEcCCCCCCCCC
Q 001366          921 FSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA----GHEKAVSYVKFL-DSGTLVTAST-DNKLKLWDLKRTSHTGPS  994 (1092)
Q Consensus       921 fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~----~H~~~V~~v~fs-~~~~L~Sgs~-Dg~I~vWDl~~~~~~~~~  994 (1092)
                      |+|++. .+++++.++.|.+||+.+++.. ..+.    ++...+..++|+ ++++++.++. ++.|.+||+.+       
T Consensus       192 ~s~dg~-~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-------  262 (353)
T 3vgz_A          192 LDSEGK-RLYTTNADGELITIDTADNKIL-SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN-------  262 (353)
T ss_dssp             EETTTT-EEEEECTTSEEEEEETTTTEEE-EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT-------
T ss_pred             ECCCCC-EEEEEcCCCeEEEEECCCCeEE-EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC-------
Confidence            999996 7777888999999999987643 3332    356678889998 5666665554 59999999974       


Q ss_pred             CCceeEEEcCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCC
Q 001366          995 TNACSLTFSGHTNEKNFVGLSTADGYIACGS-ESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRR 1073 (1092)
Q Consensus       995 ~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd 1073 (1092)
                       +..+..+....  ...++|+|+|++++.++ .++.|.+||..+++.+..+..               ...+.+++|+|+
T Consensus       263 -~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---------------~~~~~~~~~s~d  324 (353)
T 3vgz_A          263 -GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---------------PTHPNSLALSAD  324 (353)
T ss_dssp             -CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---------------CSEEEEEEECTT
T ss_pred             -CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---------------CCCCCeEEEcCC
Confidence             34455554433  25699999999655544 789999999998887776642               235799999999


Q ss_pred             CCEEEEEecC
Q 001366         1074 SDMVVAANSS 1083 (1092)
Q Consensus      1074 ~~~Lasgs~D 1083 (1092)
                      +++|+.++.+
T Consensus       325 g~~l~v~~~~  334 (353)
T 3vgz_A          325 GKTLYVSVKQ  334 (353)
T ss_dssp             SCEEEEEEEC
T ss_pred             CCEEEEEEcc
Confidence            9977776655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=2.9e-20  Score=233.96  Aligned_cols=280  Identities=9%  Similarity=0.002  Sum_probs=201.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEEcCCCCCCCcccccceeeecCC----------------------CC
Q 001366          779 ANVICSISFDRDEDHFAAAGV-SK-----KIKIFEFNALFNDSVDVYYPAVEMSNR----------------------SK  830 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~-D~-----~I~Iwd~~~~~~~~~~~~~~~~~~~h~----------------------~~  830 (1092)
                      ...|.+++|+|||++|++++. |+     .|++||+.+........     ...+.                      ..
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD-----SKVVLPGTETLSDEEKARRERQRIAAMTG  110 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC-----GGGTC--------------------CCEE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccc-----hhhcccccccccchhhhhhhhhhhccccC
Confidence            456889999999999999998 88     89999987522100000     00011                      34


Q ss_pred             eEEEEEecCCCCEEEEEECCCcEEEEECCCCc--eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceee
Q 001366          831 LSCVCWNNYIKNYLASADYDGVVKLWDACTGQ--TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLA  908 (1092)
Q Consensus       831 V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~--~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~  908 (1092)
                      |.+++|+|+ +++|++++. +.|++||+.++.  .+..+..|...+.+++|+| +++.|++++ ++.|.+||+.+++...
T Consensus       111 v~~~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          111 IVDYQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             SCCCEECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             cceeEECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            789999998 888888886 999999998883  4456677888899999999 899999887 4689999999887655


Q ss_pred             eEecCCc-----------------eEEEEEccCCCeEEEEEECCC---------------------------------eE
Q 001366          909 TIKNIAN-----------------VCCVQFSAHSSHLLAFGSADY---------------------------------RT  938 (1092)
Q Consensus       909 ~l~~~~~-----------------V~sl~fsp~~~~~latgs~Dg---------------------------------~I  938 (1092)
                      .......                 +.+++|+|||. .|++++.|+                                 .|
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            4432221                 47899999996 666666554                                 88


Q ss_pred             EEEEcCC-CCcceEEec--CCCCCeEEEEEcCCCEEEEEEC-----CCeEEEEEcCCCCCCCCCCCceeEEEcCCCC---
Q 001366          939 YCYDLRN-ARAPWCVLA--GHEKAVSYVKFLDSGTLVTAST-----DNKLKLWDLKRTSHTGPSTNACSLTFSGHTN--- 1007 (1092)
Q Consensus       939 ~vwDlr~-~~~~~~~l~--~H~~~V~~v~fs~~~~L~Sgs~-----Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~--- 1007 (1092)
                      ++||+.+ ++. .....  .|...+..++|.++++|+.++.     +..|.+||+.+        +.+...+..+..   
T Consensus       266 ~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~--------g~~~~~~~~~~~~~~  336 (741)
T 2ecf_A          266 GVISPAEQAQT-QWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLAS--------NQQRVLAHETSPTWV  336 (741)
T ss_dssp             EEECSSTTCCC-EEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTT--------CCEEEEEEEECSSCC
T ss_pred             EEEECCCCCce-EEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCC--------CceEEEEEcCCCCcC
Confidence            9999987 653 22222  4778899999933456776553     56899999984        344444444432   


Q ss_pred             -CeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEE-EEeCCCCEEEE-EecCC
Q 001366         1008 -EKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSV-CWRRRSDMVVA-ANSSG 1084 (1092)
Q Consensus      1008 -~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sv-a~spd~~~Las-gs~DG 1084 (1092)
                       .+..++|+|||+++++++.|+.++||.......+..              ...+...|.++ +|+|+++.|+. ++.++
T Consensus       337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~--------------l~~~~~~v~~~~~~s~dg~~l~~~~~~~~  402 (741)
T 2ecf_A          337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAA--------------LTHGNWSVDELLAVDEKAGLAYFRAGIES  402 (741)
T ss_dssp             CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEE--------------SCCSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred             CcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeee--------------eeecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence             446889999999999999999888887652211221              13345567777 59999997764 55555


Q ss_pred             --eEEEEEc
Q 001366         1085 --CIKVLQM 1091 (1092)
Q Consensus      1085 --~V~vW~l 1091 (1092)
                        .++||++
T Consensus       403 ~~~~~l~~~  411 (741)
T 2ecf_A          403 ARESQIYAV  411 (741)
T ss_dssp             TTCBEEEEE
T ss_pred             CceEEEEEE
Confidence              8999975

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=1.3e-19  Score=214.19  Aligned_cols=309  Identities=13%  Similarity=0.120  Sum_probs=199.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCC--------CCcccccceeeecCCCCeEEEEEecCCCCEEE----E
Q 001366          779 ANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFN--------DSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLA----S  846 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~--------~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~La----S  846 (1092)
                      ...++.+++++++.++++|+.|+ ++||+......        .......+.....+...|.+++|+|+ +++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD-NLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT-SCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC-CCEEEEEEec
Confidence            44678899999999999999887 99998643111        01111122234456778999999998 78888    7


Q ss_pred             EECCCcEEEEECCCC--------c---eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCC
Q 001366          847 ADYDGVVKLWDACTG--------Q---TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIA  914 (1092)
Q Consensus       847 gs~DgtV~IWD~~tg--------~---~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~  914 (1092)
                      |+.|++|+|||+.++        +   .+..+.+|...|++++|+|.++.+|++|+.||+|++||++++..+.... +..
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~  193 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV  193 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence            889999999998654        2   2556678999999999999558999999999999999999886654443 577


Q ss_pred             ceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCC-------CCCeEEEEEcCCCEEE-E-EECCC------e
Q 001366          915 NVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGH-------EKAVSYVKFLDSGTLV-T-ASTDN------K  979 (1092)
Q Consensus       915 ~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H-------~~~V~~v~fs~~~~L~-S-gs~Dg------~  979 (1092)
                      .|++++|+|+|. +|++|+.||.|++||++ +. ....+..|       ...|.++.|+++..++ + ++.||      .
T Consensus       194 ~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~  270 (434)
T 2oit_A          194 AVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQ-EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD  270 (434)
T ss_dssp             CEEEEEECTTSS-CEEEEETTSCEEEECTT-CC-EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred             ceeEEEEcCCCC-EEEEEcCCCcEEEEccC-Cc-ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence            899999999985 89999999999999998 32 23334333       3379999998554433 3 33443      3


Q ss_pred             EEEEEcCCCCCCCCCCCce----eEEEcCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEeCCCCCcee-eeeccccCCCC
Q 001366          980 LKLWDLKRTSHTGPSTNAC----SLTFSGHTNEKNFVGLSTADGYIACGS-ESNEVYAYHRSLPMPIT-SYKFGSIDPIS 1053 (1092)
Q Consensus       980 I~vWDl~~~~~~~~~~~~~----~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~I~Iwd~~~~~~i~-~~~~~~~~~i~ 1053 (1092)
                      +++||+++..........+    ...+.+...+-..+.+-++.+++++++ ..+.|.|.......... ...........
T Consensus       271 v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~  350 (434)
T 2oit_A          271 VVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAE  350 (434)
T ss_dssp             EEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCB
T ss_pred             eEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEecccccccc
Confidence            8999998643211100000    011113333434445557767665554 45667777654321111 11100000000


Q ss_pred             CccccCCCCCCEEEEEEe---------------CCCCEEEEEecCCeEEEEEcC
Q 001366         1054 GKETDDDNGLFVSSVCWR---------------RRSDMVVAANSSGCIKVLQMV 1092 (1092)
Q Consensus      1054 ~~~~~~~h~~~V~sva~s---------------pd~~~Lasgs~DG~V~vW~lv 1092 (1092)
                      -....++....+.++++.               |-..+|..-+.||.+..|.++
T Consensus       351 lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~  404 (434)
T 2oit_A          351 LPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMI  404 (434)
T ss_dssp             CCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEE
T ss_pred             ccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEE
Confidence            000011122233333332               234678889999999999875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=4.8e-19  Score=199.33  Aligned_cols=270  Identities=9%  Similarity=0.057  Sum_probs=184.1

Q ss_pred             EcCCeEEEEEccc-ceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCCCCcccccceeeecCC
Q 001366          751 FFDGLCKYARYSK-FEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS-KKIKIFEFNALFNDSVDVYYPAVEMSNR  828 (1092)
Q Consensus       751 ~~D~~~k~w~~~~-~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D-~~I~Iwd~~~~~~~~~~~~~~~~~~~h~  828 (1092)
                      ..|+.+.+|++.. .... .+.   ...|...+.+++|+|+|++|++++.+ +.|.+|++..... .   ..........
T Consensus        12 ~~~~~v~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~-~---~~~~~~~~~~   83 (343)
T 1ri6_A           12 PESQQIHVWNLNHEGALT-LTQ---VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-A---LTFAAESALP   83 (343)
T ss_dssp             GGGTEEEEEEECTTSCEE-EEE---EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-C---EEEEEEEECS
T ss_pred             CCCCeEEEEEECCCCcEE-Eee---eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC-c---eeeccccccC
Confidence            4688999998742 1111 111   12456678889999999999988876 8999999872110 0   1111122223


Q ss_pred             CCeEEEEEecCCCCEEEEEE-CCCcEEEEECC---CCceEEEeeccCccEEEEEEecCCCCEEEEEe-CCCcEEEEecCC
Q 001366          829 SKLSCVCWNNYIKNYLASAD-YDGVVKLWDAC---TGQTVSHYIEHEKRAWSVDFSQVHPTKLASGS-DDCSVKLWNINE  903 (1092)
Q Consensus       829 ~~V~~v~~sp~~~~~LaSgs-~DgtV~IWD~~---tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs-~Dg~I~iWDl~~  903 (1092)
                      ..+.+++|+|+ +++|++++ .++.|.+||+.   +++.+..+..+ ..+.+++|+| +++.+++++ .|+.|.+||+.+
T Consensus        84 ~~~~~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A           84 GSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             SCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCcEEEEcCC-CCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecC
Confidence            47899999998 77666555 48899999994   33455555543 4588999999 777777776 899999999987


Q ss_pred             -Cceee----eEe--cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCC--CCcc-eEEec----CC--CCCeEEEEEc-
Q 001366          904 -KNSLA----TIK--NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRN--ARAP-WCVLA----GH--EKAVSYVKFL-  966 (1092)
Q Consensus       904 -~~~l~----~l~--~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~--~~~~-~~~l~----~H--~~~V~~v~fs-  966 (1092)
                       ++...    .+.  ....+.+++|+|++..+++++..++.|.+||+..  +... .....    ++  ...+..++|+ 
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~  240 (343)
T 1ri6_A          161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  240 (343)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence             54432    222  3457889999999975556666899999999964  2211 11111    11  2357789998 


Q ss_pred             CCCEEE-EEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEeCC
Q 001366          967 DSGTLV-TASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGS-ESNEVYAYHRS 1036 (1092)
Q Consensus       967 ~~~~L~-Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~I~Iwd~~ 1036 (1092)
                      ++++|+ ++..++.|.+||+.....    ....+..+..+.. +..++|+|+|++|++++ .++.|.+|++.
T Consensus       241 dg~~l~v~~~~~~~i~v~d~~~~~~----~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          241 DGRHLYACDRTASLITVFSVSEDGS----VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSC----CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCEEEEEecCCCEEEEEEEcCCCC----ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            455666 555799999999973110    1233444554444 88899999999888877 68999999543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=2.6e-19  Score=225.32  Aligned_cols=313  Identities=9%  Similarity=0.023  Sum_probs=220.8

Q ss_pred             ccCCCCcE--EeEc-CC-----eEEEEEcccceEEeeEEeeeecCCC----------------------CCEEEEEEcCC
Q 001366          741 IQNPTDRL--GAFF-DG-----LCKYARYSKFEVQGMLRTGEFNNSA----------------------NVICSISFDRD  790 (1092)
Q Consensus       741 ~~~~~~~l--~~~~-D~-----~~k~w~~~~~~~~~~l~~~~l~~h~----------------------~~V~sl~fspd  790 (1092)
                      .++|++..  .+.. |+     .+.+|+....+....+..   ..+.                      ..|.+++|+||
T Consensus        43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD  119 (741)
T 2ecf_A           43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDS---KVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD  119 (741)
T ss_dssp             EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECG---GGTC--------------------CCEESCCCEECTT
T ss_pred             eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccch---hhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence            35777654  3344 77     899999877665544431   1111                      23788999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeecc
Q 001366          791 EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEH  870 (1092)
Q Consensus       791 g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h  870 (1092)
                      |++|++++. +.|.+||+.+....     .......+...+.+++|+|+ +++|++++ ++.|++||+.+++.......+
T Consensus       120 g~~l~~~~~-~~i~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~SPD-G~~la~~~-~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          120 AQRLLFPLG-GELYLYDLKQEGKA-----AVRQLTHGEGFATDAKLSPK-GGFVSFIR-GRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             SSEEEEEET-TEEEEEESSSCSTT-----SCCBCCCSSSCEEEEEECTT-SSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred             CCEEEEEeC-CcEEEEECCCCCcc-----eEEEcccCCcccccccCCCC-CCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence            999999986 89999998753000     11122345678999999998 88888887 569999999988766554444


Q ss_pred             Ccc----------------EEEEEEecCCCCEEEEEeCCC---------------------------------cEEEEec
Q 001366          871 EKR----------------AWSVDFSQVHPTKLASGSDDC---------------------------------SVKLWNI  901 (1092)
Q Consensus       871 ~~~----------------V~sv~fsp~~~~~laSgs~Dg---------------------------------~I~iWDl  901 (1092)
                      ...                +.+++|+| +++.|++++.|+                                 .|.+||+
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             ccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            332                47899999 889999988776                                 7899999


Q ss_pred             CC-CceeeeE---ecCCceEEEEEccCCCeEEEEEE-----CCCeEEEEEcCCCCcceEEecCCCC----CeEEEEEc-C
Q 001366          902 NE-KNSLATI---KNIANVCCVQFSAHSSHLLAFGS-----ADYRTYCYDLRNARAPWCVLAGHEK----AVSYVKFL-D  967 (1092)
Q Consensus       902 ~~-~~~l~~l---~~~~~V~sl~fsp~~~~~latgs-----~Dg~I~vwDlr~~~~~~~~l~~H~~----~V~~v~fs-~  967 (1092)
                      .+ ++.....   .+...+.+++| |+|. .|++++     .+..|++||+.+++. ...+..|..    .+..++|+ +
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~-~l~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQ-HLSFQRQSRDQKKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             STTCCCEEECCCSCSSEEEEEEEE-EETT-EEEEEEEETTSSEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECTT
T ss_pred             CCCCceEEecCCCCcceEEEEEEe-CCCC-EEEEEEecccCCeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECCC
Confidence            98 7765433   24567899999 9997 555444     367899999998764 334444432    45688998 5


Q ss_pred             CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEE-EEecCCCEEEE-EecCC--cEEEEeCCC-CCcee
Q 001366          968 SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV-GLSTADGYIAC-GSESN--EVYAYHRSL-PMPIT 1042 (1092)
Q Consensus       968 ~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v-~~spdg~~las-gs~Dg--~I~Iwd~~~-~~~i~ 1042 (1092)
                      ++++++++.||.++||.+..       .+. ...+..|...+..+ .|+|+|+.|+. ++.++  .++||++.. +..+.
T Consensus       348 g~~~~~~~~~g~~~l~~~~~-------~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~  419 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRIDS-------KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ  419 (741)
T ss_dssp             SCEEEEECTTSSCEEEEECS-------SSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred             CeEEEEecCCCccEEEEEcC-------CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence            66788888999888888762       123 56777788888887 69999997754 45555  899998754 32222


Q ss_pred             eeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecC----CeEEEEEc
Q 001366         1043 SYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSS----GCIKVLQM 1091 (1092)
Q Consensus      1043 ~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~D----G~V~vW~l 1091 (1092)
                      .+              .. ...+.+++|+||++.|+....+    +.+.+|++
T Consensus       420 ~l--------------~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          420 RL--------------SK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             EC--------------CC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             ec--------------cc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            21              11 3457899999999998876544    45777753

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=4.2e-19  Score=222.22  Aligned_cols=305  Identities=9%  Similarity=0.024  Sum_probs=208.9

Q ss_pred             EEeEcCCeEEEEEcccceE--EeeEEeeee-----------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 001366          748 LGAFFDGLCKYARYSKFEV--QGMLRTGEF-----------NNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFND  814 (1092)
Q Consensus       748 l~~~~D~~~k~w~~~~~~~--~~~l~~~~l-----------~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~  814 (1092)
                      +....|+ + +|+..+.+.  ...+....+           ..+...|.+++|+|| .+++.+. +++|++||+.+.   
T Consensus        39 ~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~---  111 (706)
T 2z3z_A           39 VFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLAR---  111 (706)
T ss_dssp             EEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETTTT---
T ss_pred             EEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECCCC---
Confidence            3444455 7 888776655  322222111           011256999999999 6666654 699999998652   


Q ss_pred             CcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC-----CceEEEeeccCcc--------------EE
Q 001366          815 SVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT-----GQTVSHYIEHEKR--------------AW  875 (1092)
Q Consensus       815 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t-----g~~i~~l~~h~~~--------------V~  875 (1092)
                           .......+...+.+++|+|+ ++.|+++ .|+.|++||+.+     ++.......+...              +.
T Consensus       112 -----~~~~l~~~~~~~~~~~~Spd-G~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~  184 (706)
T 2z3z_A          112 -----KVTYLFDTNEETASLDFSPV-GDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEK  184 (706)
T ss_dssp             -----EEEEEECCTTCCTTCEECTT-SSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCC
T ss_pred             -----ceEEccCCcccccCCcCCCC-CCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCc
Confidence                 11223345677899999998 8888885 689999999998     8766544444332              48


Q ss_pred             EEEEecCCCCEEEEEe---------------------------------CCCcEEEEecCCCceeeeEe---cCCceEEE
Q 001366          876 SVDFSQVHPTKLASGS---------------------------------DDCSVKLWNINEKNSLATIK---NIANVCCV  919 (1092)
Q Consensus       876 sv~fsp~~~~~laSgs---------------------------------~Dg~I~iWDl~~~~~l~~l~---~~~~V~sl  919 (1092)
                      ++.|+| +++.|++++                                 .+..|.+||+.+++......   +...+.++
T Consensus       185 ~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  263 (706)
T 2z3z_A          185 GTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNL  263 (706)
T ss_dssp             SEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEE
T ss_pred             eEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeE
Confidence            999999 899999987                                 44679999999887654432   34678999


Q ss_pred             EEccCCCeEEEEEECCC-----eEEEEEcCCCCcceEEec-CCCC---CeEEEEEcC--C-CEEEEEECCCeEEEEEcCC
Q 001366          920 QFSAHSSHLLAFGSADY-----RTYCYDLRNARAPWCVLA-GHEK---AVSYVKFLD--S-GTLVTASTDNKLKLWDLKR  987 (1092)
Q Consensus       920 ~fsp~~~~~latgs~Dg-----~I~vwDlr~~~~~~~~l~-~H~~---~V~~v~fs~--~-~~L~Sgs~Dg~I~vWDl~~  987 (1092)
                      +|+|+|. .|++++.++     .|++||+.+++....... .+..   .+..+.|++  + .++++++.|+.++||++..
T Consensus       264 ~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~  342 (706)
T 2z3z_A          264 SWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT  342 (706)
T ss_dssp             EECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET
T ss_pred             EEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC
Confidence            9999996 677766665     999999998733222222 2222   246788986  4 4677888899999998862


Q ss_pred             CCCCCCCCCceeEEEcCCCCCeEE-EEEecCCCEEEEEec-CC----cEEEEeCCCCCceeeeeccccCCCCCccccCCC
Q 001366          988 TSHTGPSTNACSLTFSGHTNEKNF-VGLSTADGYIACGSE-SN----EVYAYHRSLPMPITSYKFGSIDPISGKETDDDN 1061 (1092)
Q Consensus       988 ~~~~~~~~~~~~~~l~~h~~~V~~-v~~spdg~~lasgs~-Dg----~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h 1061 (1092)
                             .+.....+..|...+.. ++|+|+|+.|+.++. ++    .|+.|+...+.. ..+               .+
T Consensus       343 -------~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l---------------~~  399 (706)
T 2z3z_A          343 -------TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL---------------TP  399 (706)
T ss_dssp             -------TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES---------------CC
T ss_pred             -------CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec---------------cC
Confidence                   23456677778777876 799999997766554 44    677777665442 111               13


Q ss_pred             CCCEEEEEEeCCCCEEEEEecC----CeEEEEEc
Q 001366         1062 GLFVSSVCWRRRSDMVVAANSS----GCIKVLQM 1091 (1092)
Q Consensus      1062 ~~~V~sva~spd~~~Lasgs~D----G~V~vW~l 1091 (1092)
                      ...+.+++|+||+++|+.++.+    +.|++|++
T Consensus       400 ~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          400 ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             CCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            4568999999999998877554    56999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=3.8e-19  Score=199.56  Aligned_cols=262  Identities=11%  Similarity=-0.015  Sum_probs=191.7

Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCC-CeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeec-
Q 001366          792 DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRS-KLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-  869 (1092)
Q Consensus       792 ~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~-  869 (1092)
                      ++|++++.+++|.+||..+..      .......++.. .+.+++|+|++..++++++.++.|.+||+.+++.+..+.. 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~   75 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMA------VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE------EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             cEEEEcCCCCeEEEEECCCCc------EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence            478999999999999986521      11111112221 5789999998334556667789999999999998877653 


Q ss_pred             c----CccEEEEEEecCCCCEEEEEe------------CCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEE
Q 001366          870 H----EKRAWSVDFSQVHPTKLASGS------------DDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       870 h----~~~V~sv~fsp~~~~~laSgs------------~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      +    ...+.+++|+| +++.+++++            .++.|.+||+.+++.+..+.....+.+++|+|++. +++++ 
T Consensus        76 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~-  152 (337)
T 1pby_B           76 TPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS-KLYGL-  152 (337)
T ss_dssp             BTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS-CEEEE-
T ss_pred             CcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCC-EEEEe-
Confidence            2    23577899999 888888876            57999999999998888888777788999999996 45555 


Q ss_pred             CCCeEEEEEcCCCCcceEEecCCC--CCeEEEEEc-CCCEEEEEE-CCC-----------------------eEEEEEcC
Q 001366          934 ADYRTYCYDLRNARAPWCVLAGHE--KAVSYVKFL-DSGTLVTAS-TDN-----------------------KLKLWDLK  986 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~~H~--~~V~~v~fs-~~~~L~Sgs-~Dg-----------------------~I~vWDl~  986 (1092)
                       ++.|++||+.+++. ...+..+.  ..+   .|+ ++..++.++ .++                       .|.+||+.
T Consensus       153 -~~~i~~~d~~~~~~-~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  227 (337)
T 1pby_B          153 -GRDLHVMDPEAGTL-VEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             -SSSEEEEETTTTEE-EEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             -CCeEEEEECCCCcE-eeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence             68999999988753 33443332  222   455 333333322 222                       57899998


Q ss_pred             CCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEE
Q 001366          987 RTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVS 1066 (1092)
Q Consensus       987 ~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~ 1066 (1092)
                      +...       ....+..+...+.+++|+|+|++++++  ++.|++||..+++.+..+..               ...+.
T Consensus       228 ~~~~-------~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------------~~~~~  283 (337)
T 1pby_B          228 TGEM-------AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---------------PHSYY  283 (337)
T ss_dssp             TCCE-------EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---------------SSCCC
T ss_pred             CCCc-------eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---------------CCcee
Confidence            4321       133455566778899999999998888  68999999998887766542               13468


Q ss_pred             EEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1067 SVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1067 sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +++|+|++++|++++.++.|++|++
T Consensus       284 ~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          284 SVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEEECTTSCEEEEESBSSEEEEEET
T ss_pred             eEEECCCCCEEEEEcCCCcEEEEEC
Confidence            8999999999999999999999986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=6.6e-19  Score=192.77  Aligned_cols=254  Identities=8%  Similarity=0.002  Sum_probs=185.7

Q ss_pred             EcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CCCCCcccccceeeecC-C
Q 001366          751 FFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNA-LFNDSVDVYYPAVEMSN-R  828 (1092)
Q Consensus       751 ~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~-~~~~~~~~~~~~~~~~h-~  828 (1092)
                      ..|+.+.+|+....+...      +..|...|.+++|+|+|++|++++ ++.|.+||+.. ....       .....+ .
T Consensus        19 ~~~~~i~~~d~~~~~~~~------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-------~~~~~~~~   84 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRV------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-------KVDTGFAT   84 (297)
T ss_dssp             CCCEEEEEEETTTTEEEE------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-------ECCCTTCC
T ss_pred             CcceeEEEEeCCCCceee------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-------Eecccccc
Confidence            467788999987765442      234678899999999999999987 78999999865 2211       111122 4


Q ss_pred             CCeEEEEEecCCCCEEEEEE--CCCcEEEEE--CCCCceEEEeeccCccEEEEEEecCCCCEEE-EEeCCCcEEEEecC-
Q 001366          829 SKLSCVCWNNYIKNYLASAD--YDGVVKLWD--ACTGQTVSHYIEHEKRAWSVDFSQVHPTKLA-SGSDDCSVKLWNIN-  902 (1092)
Q Consensus       829 ~~V~~v~~sp~~~~~LaSgs--~DgtV~IWD--~~tg~~i~~l~~h~~~V~sv~fsp~~~~~la-Sgs~Dg~I~iWDl~-  902 (1092)
                      ..|.+++|+|+ +.+|++++  .++.++||.  ..+++ ...+..+. .+.+++|+| ++..|+ +++.|+.++||++. 
T Consensus        85 ~~~~~~~~spd-g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~  160 (297)
T 2ojh_A           85 ICNNDHGISPD-GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDI  160 (297)
T ss_dssp             CBCSCCEECTT-SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT-TSSEEEEEEEETTEEEEEEEET
T ss_pred             ccccceEECCC-CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC-CCCEEEEEECCCCceEEEEEEC
Confidence            67899999998 88899888  334555555  44544 34444443 488999999 777665 88899999999964 


Q ss_pred             -CCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECC---
Q 001366          903 -EKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTD---  977 (1092)
Q Consensus       903 -~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~D---  977 (1092)
                       ++.......+...+.+++|+|++..+++++..++.+++|++.........+..|...+.++.|+ ++.+|++++.+   
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  240 (297)
T 2ojh_A          161 DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADV  240 (297)
T ss_dssp             TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTC
T ss_pred             CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCC
Confidence             3444333346678999999999974444555699999999874334567777888889999998 66778877765   


Q ss_pred             --------CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCC
Q 001366          978 --------NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESN 1028 (1092)
Q Consensus       978 --------g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg 1028 (1092)
                              +.|.+||+.+..      ...+..+.+|...+..++|+|+|++|++++.+.
T Consensus       241 ~~~~~~~~~~l~~~d~~~~~------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          241 FDHPRDLDVRVQLMDMDGGN------VETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CSCCSSEEEEEEEEETTSCS------CEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CcccccCceEEEEEecCCCC------ceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                    569999998432      233455557888899999999999998887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=8.6e-19  Score=219.75  Aligned_cols=312  Identities=9%  Similarity=-0.052  Sum_probs=207.1

Q ss_pred             ccCCCCcE-EeEcCCeEEEEEcccceEEeeEEeeeecCCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEEE
Q 001366          741 IQNPTDRL-GAFFDGLCKYARYSKFEVQGMLRTGEFNNSAN---VICSISFDRDEDHFAAAGVS---------KKIKIFE  807 (1092)
Q Consensus       741 ~~~~~~~l-~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~---~V~sl~fspdg~~latgg~D---------~~I~Iwd  807 (1092)
                      .++|++.+ ....|+++++|+....+....+     .+|..   .|.+++|+|||++||+++.+         +.|.+||
T Consensus        23 ~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~-----~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           23 KWISDTEFIYREQKGTVRLWNVETNTSTVLI-----EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEE-----CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             EEcCCCcEEEEeCCCCEEEEECCCCcEEEEe-----ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            35666554 2347889999998776554333     34443   48999999999999999875         6788999


Q ss_pred             cCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccE-------------
Q 001366          808 FNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRA-------------  874 (1092)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V-------------  874 (1092)
                      +.+....     .......+...+.+++|+|+ ++.||+++. +.|++||+.+++.......+...+             
T Consensus        98 ~~~~~~~-----~l~~~~~~~~~~~~~~~SPd-G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee  170 (723)
T 1xfd_A           98 IPHGDPQ-----SLDPPEVSNAKLQYAGWGPK-GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE  170 (723)
T ss_dssp             SSSCCCE-----ECCCTTCCSCCCSBCCBCSS-TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred             CCCCceE-----eccCCccccccccccEECCC-CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence            8763210     00111234455889999998 888888875 799999999988776655544333             


Q ss_pred             -----EEEEEecCCCCEEEEEeCCC----------------------------------cEEEEecCCCceeeeEec---
Q 001366          875 -----WSVDFSQVHPTKLASGSDDC----------------------------------SVKLWNINEKNSLATIKN---  912 (1092)
Q Consensus       875 -----~sv~fsp~~~~~laSgs~Dg----------------------------------~I~iWDl~~~~~l~~l~~---  912 (1092)
                           .+++|+| +++.|++++.|+                                  .|++||+.+++....+..   
T Consensus       171 ~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~  249 (723)
T 1xfd_A          171 ILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (723)
T ss_dssp             TSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             eccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence                 7899999 899999888653                                  799999998886555553   


Q ss_pred             ----CCceEEEEEccCCCeEEEEEEC----CCeEEEEEcCCCCcceEEe-cCCCCCe----EEEEEc-CCCEEEE--EEC
Q 001366          913 ----IANVCCVQFSAHSSHLLAFGSA----DYRTYCYDLRNARAPWCVL-AGHEKAV----SYVKFL-DSGTLVT--AST  976 (1092)
Q Consensus       913 ----~~~V~sl~fsp~~~~~latgs~----Dg~I~vwDlr~~~~~~~~l-~~H~~~V----~~v~fs-~~~~L~S--gs~  976 (1092)
                          ...+.+++|+|+|. ++++.+.    +..|++||+.+++.. ..+ ..|...+    ..++|+ +++.|+.  +..
T Consensus       250 ~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  327 (723)
T 1xfd_A          250 PRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTGVCT-KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP  327 (723)
T ss_dssp             GGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTCCEE-EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred             CCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCCcce-EEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence                45689999999995 6655543    367999999887642 233 2334444    378999 5665553  556


Q ss_pred             CC------eEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE-EEEecCCCEEEEEecC---CcEEEEeCCCCCceeeeec
Q 001366          977 DN------KLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF-VGLSTADGYIACGSES---NEVYAYHRSLPMPITSYKF 1046 (1092)
Q Consensus       977 Dg------~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~-v~~spdg~~lasgs~D---g~I~Iwd~~~~~~i~~~~~ 1046 (1092)
                      ++      .|.+||+.....     ..+...+..+...+.. ++|+|||++|+..+.+   +.+++|++.......... 
T Consensus       328 ~~~~~~~~~l~~~d~~~~~~-----~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-  401 (723)
T 1xfd_A          328 QGGRGKFYHITVSSSQPNSS-----NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC-  401 (723)
T ss_dssp             CSSSSCEEEEEEECSSCCSS-----SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBC-
T ss_pred             cCCCcceeEEEEEeccCCCC-----ccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcce-
Confidence            77      466677321111     0012333333334444 6999999998766654   789999876432110000 


Q ss_pred             cccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEe
Q 001366         1047 GSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAAN 1081 (1092)
Q Consensus      1047 ~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs 1081 (1092)
                           +.+   ...|...+..++|+||+++|+...
T Consensus       402 -----l~~---~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          402 -----LSC---DLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             -----SST---TSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             -----ecc---cccCCCCeEEEEECCCCCEEEEEc
Confidence                 000   001456688999999999888654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=1.9e-18  Score=226.35  Aligned_cols=312  Identities=11%  Similarity=0.088  Sum_probs=227.0

Q ss_pred             ccCCCCcEEeEc------CC--eEEEEEcccceEEeeEEeeeecCCCCCE-------EEEEEcCCCCEEEEEeCC-----
Q 001366          741 IQNPTDRLGAFF------DG--LCKYARYSKFEVQGMLRTGEFNNSANVI-------CSISFDRDEDHFAAAGVS-----  800 (1092)
Q Consensus       741 ~~~~~~~l~~~~------D~--~~k~w~~~~~~~~~~l~~~~l~~h~~~V-------~sl~fspdg~~latgg~D-----  800 (1092)
                      .++|++...++.      ++  .+.+|+....+.      ..+..|...+       .+++|+|||+++++++.+     
T Consensus        59 ~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~------~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~  132 (1045)
T 1k32_A           59 RFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI------KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS  132 (1045)
T ss_dssp             EECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE------EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTT
T ss_pred             EECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe------EEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcc
Confidence            467887654432      23  577787765432      2356788888       899999999977777754     


Q ss_pred             -CcEEEEEcCCCCCCCccc------------------------------------------ccceeeecCCCCeEEEEEe
Q 001366          801 -KKIKIFEFNALFNDSVDV------------------------------------------YYPAVEMSNRSKLSCVCWN  837 (1092)
Q Consensus       801 -~~I~Iwd~~~~~~~~~~~------------------------------------------~~~~~~~~h~~~V~~v~~s  837 (1092)
                       ..|.+|++..........                                          .......+|...+.++.|+
T Consensus       133 ~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s  212 (1045)
T 1k32_A          133 MTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV  212 (1045)
T ss_dssp             CCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE
T ss_pred             cceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe
Confidence             347777764321000000                                          0001124577889999999


Q ss_pred             cCCCCEEEEEECCCcEEEEECCC-CceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec----
Q 001366          838 NYIKNYLASADYDGVVKLWDACT-GQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN----  912 (1092)
Q Consensus       838 p~~~~~LaSgs~DgtV~IWD~~t-g~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~----  912 (1092)
                      ++  .++++++.|++++||.+.. +.....+..|. .+..++|+| ++..|+++ .++.|.+||+.. ..+..+..    
T Consensus       213 ~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~-~~l~~l~~~~~~  286 (1045)
T 1k32_A          213 GH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNT-DGRRILFS-KGGSIYIFNPDT-EKIEKIEIGDLE  286 (1045)
T ss_dssp             TT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEE-SSSCEEEE-ETTEEEEECTTT-CCEEECCCCCCC
T ss_pred             CC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcC-CCCEEEEE-eCCEEEEecCCc-eEeeeeccCccc
Confidence            85  6777888899999998753 44555666565 466789999 88888887 489999999954 33434433    


Q ss_pred             --------CCceEEEEEc-cCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCC-CeEEEEEcCCCEEEEEECCCeEE-
Q 001366          913 --------IANVCCVQFS-AHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK-AVSYVKFLDSGTLVTASTDNKLK-  981 (1092)
Q Consensus       913 --------~~~V~sl~fs-p~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~-~V~~v~fs~~~~L~Sgs~Dg~I~-  981 (1092)
                              ...+.+++|+ |+|. .+++++ ++.|++||+..+.  ...+..|.. .+..++|++++.|++++.++.|. 
T Consensus       287 ~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~  362 (1045)
T 1k32_A          287 SPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTY--VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLG  362 (1045)
T ss_dssp             BCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSSB--EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred             ccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCCc--eEEccCCCcceEEeeeEcCCCeEEEEECCCceEE
Confidence                    2268999999 9996 666666 8899999998654  345667777 89999999555788888888888 


Q ss_pred             EEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCC
Q 001366          982 LWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDN 1061 (1092)
Q Consensus       982 vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h 1061 (1092)
                      +||+...        . ...+.+|...+..++|||||++|++++.++.|++||+.+++.....              .+|
T Consensus       363 ~~d~~~~--------~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~--------------~~~  419 (1045)
T 1k32_A          363 IYDYRTG--------K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE--------------RSR  419 (1045)
T ss_dssp             EEETTTC--------C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--------------ECS
T ss_pred             EEECCCC--------C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec--------------cCC
Confidence            8998732        2 3344478888999999999999999999999999999887755433              245


Q ss_pred             CCCEEEEEEeCCCCEEEEEecCC----------eEEEEEc
Q 001366         1062 GLFVSSVCWRRRSDMVVAANSSG----------CIKVLQM 1091 (1092)
Q Consensus      1062 ~~~V~sva~spd~~~Lasgs~DG----------~V~vW~l 1091 (1092)
                      ...|.+++|+|||++|++++.++          .|++|++
T Consensus       420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~  459 (1045)
T 1k32_A          420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  459 (1045)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence            66789999999999999887754          8999986

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=3.2e-19  Score=223.66  Aligned_cols=275  Identities=9%  Similarity=0.017  Sum_probs=190.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCC---CeEEEEEecCCCCEEEEEECC--------
Q 001366          782 ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRS---KLSCVCWNNYIKNYLASADYD--------  850 (1092)
Q Consensus       782 V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~sp~~~~~LaSgs~D--------  850 (1092)
                      +.+++|+|||+++++ +.|++|++||+.+..       .......|..   .|.+++|+|+ +++|++++.+        
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~-------~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~   89 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNT-------STVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSY   89 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC-------CEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCC
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCc-------EEEEeccccccccccceEEECCC-CCEEEEEecCccceeecc
Confidence            566899999998776 789999999987521       1112222333   4899999998 8899998775        


Q ss_pred             -CcEEEEECCCCceEEEee---ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec-CCc----------
Q 001366          851 -GVVKLWDACTGQTVSHYI---EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN-IAN----------  915 (1092)
Q Consensus       851 -gtV~IWD~~tg~~i~~l~---~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~-~~~----------  915 (1092)
                       +.|++||+.+++. ..+.   +|...+.+++|+| +++.||+++. +.|++||+.+++....... ...          
T Consensus        90 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v  166 (723)
T 1xfd_A           90 TGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (723)
T ss_dssp             CSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             eeeEEEEECCCCce-EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence             7888999998876 3343   3455588999999 8999999886 7999999998877665543 222          


Q ss_pred             --------eEEEEEccCCCeEEEEEECCC----------------------------------eEEEEEcCCCCcceEEe
Q 001366          916 --------VCCVQFSAHSSHLLAFGSADY----------------------------------RTYCYDLRNARAPWCVL  953 (1092)
Q Consensus       916 --------V~sl~fsp~~~~~latgs~Dg----------------------------------~I~vwDlr~~~~~~~~l  953 (1092)
                              +.+++|+|+|. .|++++.|+                                  .|++||+.+++. ...+
T Consensus       167 ~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l  244 (723)
T 1xfd_A          167 YEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEM  244 (723)
T ss_dssp             HHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEEC
T ss_pred             EEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEe
Confidence                    37899999996 666666442                                  899999987653 2344


Q ss_pred             cCC------CCCeEEEEEcCC-CEEEEEEC----CCeEEEEEcCCCCCCCCCCCceeEEEcC-CCCCeE----EEEEecC
Q 001366          954 AGH------EKAVSYVKFLDS-GTLVTAST----DNKLKLWDLKRTSHTGPSTNACSLTFSG-HTNEKN----FVGLSTA 1017 (1092)
Q Consensus       954 ~~H------~~~V~~v~fs~~-~~L~Sgs~----Dg~I~vWDl~~~~~~~~~~~~~~~~l~~-h~~~V~----~v~~spd 1017 (1092)
                      ..+      ...+..++|+++ +.|++.+.    +..|.+||+.+        +.+...+.. +...+.    .++|+||
T Consensus       245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~--------g~~~~~~~~~~~~~~~~~~~~~~~spd  316 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT--------GVCTKKHEDESEAWLHRQNEEPVFSKD  316 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT--------CCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred             eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC--------CcceEEEEeccCCEEeccCCCceEcCC
Confidence            443      567899999954 45555543    35799999984        334444332 334343    7899999


Q ss_pred             CCEEEE--EecCC------cEEEEe-CCCCCc--eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecC---
Q 001366         1018 DGYIAC--GSESN------EVYAYH-RSLPMP--ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSS--- 1083 (1092)
Q Consensus      1018 g~~las--gs~Dg------~I~Iwd-~~~~~~--i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~D--- 1083 (1092)
                      |+.|+.  +..++      .|++|+ ...+..  +..+             ..++...+..++|+||++.|+..+.+   
T Consensus       317 g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~  383 (723)
T 1xfd_A          317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI-------------TSGDWDVTKILAYDEKGNKIYFLSTEDLP  383 (723)
T ss_dssp             SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS-------------CCSSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred             CCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe-------------ecCCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence            997664  44566      567777 333321  1111             11222223347999999999876655   


Q ss_pred             CeEEEEEc
Q 001366         1084 GCIKVLQM 1091 (1092)
Q Consensus      1084 G~V~vW~l 1091 (1092)
                      +.++||++
T Consensus       384 ~~~~l~~~  391 (723)
T 1xfd_A          384 RRRQLYSA  391 (723)
T ss_dssp             TCCEEEEE
T ss_pred             cceEEEEE
Confidence            78999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.81  E-value=3e-18  Score=192.28  Aligned_cols=273  Identities=12%  Similarity=-0.004  Sum_probs=199.2

Q ss_pred             EEeEcCCeEEEEEcccceEEeeEEeeeecCCCC-CEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCCCCcccccceeee
Q 001366          748 LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSAN-VICSISFDRDEDHF-AAAGVSKKIKIFEFNALFNDSVDVYYPAVEM  825 (1092)
Q Consensus       748 l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~-~V~sl~fspdg~~l-atgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~  825 (1092)
                      +....++.+.+|+....+....+..    ++.. .+.+++|+|+|+++ ++++.++.|.+||+.+...   .   .....
T Consensus         5 v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---~---~~~~~   74 (337)
T 1pby_B            5 LAPARPDKLVVIDTEKMAVDKVITI----ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET---L---GRIDL   74 (337)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEEC----TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE---E---EEEEC
T ss_pred             EEcCCCCeEEEEECCCCcEEEEEEc----CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe---E---eeEEc
Confidence            4567889999999988776655442    2221 36779999999865 5555678999999865210   0   00111


Q ss_pred             cC----CCCeEEEEEecCCCCEEEEEE------------CCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEE
Q 001366          826 SN----RSKLSCVCWNNYIKNYLASAD------------YDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLAS  889 (1092)
Q Consensus       826 ~h----~~~V~~v~~sp~~~~~LaSgs------------~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laS  889 (1092)
                      .+    ...+.+++|+|+ +++|++++            .++.|.+||+.+++.+..+.. ...+.+++|+| +++.|++
T Consensus        75 ~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~  151 (337)
T 1pby_B           75 STPEERVKSLFGAALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYG  151 (337)
T ss_dssp             CBTTEEEECTTCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEE
T ss_pred             CCcccccccccceEECCC-CCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEE
Confidence            11    125678999998 77787776            579999999999988877764 45678899999 7887777


Q ss_pred             EeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCC-----------------------eEEEEEcCCC
Q 001366          890 GSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADY-----------------------RTYCYDLRNA  946 (1092)
Q Consensus       890 gs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg-----------------------~I~vwDlr~~  946 (1092)
                      +  ++.|.+||+.+++.+..+........+.|+|++..+++++..++                       .|.+||+.++
T Consensus       152 ~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  229 (337)
T 1pby_B          152 L--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             E--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             e--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence            7  68899999999988877764332223478999864444443333                       4789999987


Q ss_pred             CcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEe
Q 001366          947 RAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGS 1025 (1092)
Q Consensus       947 ~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs 1025 (1092)
                      +.....+..+...+.+++|+ ++.+++++  ++.|.+||+.+        +..+..+..+ ..+.+++|+|+|++|++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~--------~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK--------NASIKRVPLP-HSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT--------TEEEEEEECS-SCCCEEEECTTSCEEEEES
T ss_pred             CceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC--------CcCcceecCC-CceeeEEECCCCCEEEEEc
Confidence            65433455667788899999 55677776  79999999973        4445555433 4578999999999999899


Q ss_pred             cCCcEEEEeCCCCCceeeeec
Q 001366         1026 ESNEVYAYHRSLPMPITSYKF 1046 (1092)
Q Consensus      1026 ~Dg~I~Iwd~~~~~~i~~~~~ 1046 (1092)
                      .++.|++||..+++.+..+..
T Consensus       299 ~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          299 ALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             BSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCcEEEEECcCCcEEEEEEc
Confidence            999999999999988887764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=4.7e-18  Score=222.74  Aligned_cols=277  Identities=10%  Similarity=0.003  Sum_probs=214.8

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      +.+|...+.++.|+++ .++++++.|+++.||.+.....      .... ..+...+.+++|+|+ ++.|+++ .++.|+
T Consensus       199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~------~~~~-l~~~~~~~~~~~SpD-G~~la~~-~~~~i~  268 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK------DLRK-HTSFTDYYPRHLNTD-GRRILFS-KGGSIY  268 (1045)
T ss_dssp             EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC------SCEE-CCCCCSSCEEEEEES-SSCEEEE-ETTEEE
T ss_pred             CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC------cceE-ecCCCCcceeeEcCC-CCEEEEE-eCCEEE
Confidence            3689999999999988 6777888889999998763111      1111 112234677899998 7777777 489999


Q ss_pred             EEECCCCceEEEeec-----------cCccEEEEEEe-cCCCCEEEEEeCCCcEEEEecCCCceeeeEecCC-ceEEEEE
Q 001366          855 LWDACTGQTVSHYIE-----------HEKRAWSVDFS-QVHPTKLASGSDDCSVKLWNINEKNSLATIKNIA-NVCCVQF  921 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~-----------h~~~V~sv~fs-p~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~-~V~sl~f  921 (1092)
                      +||+... .+..+.+           |...+.+++|+ | ++..|++++ ++.|.+|++..+.......+.. .+.+++|
T Consensus       269 ~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (1045)
T 1k32_A          269 IFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGG  345 (1045)
T ss_dssp             EECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECS
T ss_pred             EecCCce-EeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeE
Confidence            9999544 4445554           44578999999 9 888888887 7899999999877554334555 7999999


Q ss_pred             ccCCCeEEEEEECCCeEE-EEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCcee
Q 001366          922 SAHSSHLLAFGSADYRTY-CYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACS  999 (1092)
Q Consensus       922 sp~~~~~latgs~Dg~I~-vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~  999 (1092)
                      + +|. .|++++.++.+. +||+.....  ..+.+|...+..++|+ ++.+|++++.++.|++||+.+        +...
T Consensus       346 s-dg~-~l~~~s~~~~l~~~~d~~~~~~--~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t--------g~~~  413 (1045)
T 1k32_A          346 D-TKV-AFIHGTREGDFLGIYDYRTGKA--EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET--------GKPT  413 (1045)
T ss_dssp             S-SEE-EEEEEETTEEEEEEEETTTCCE--EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT--------CCEE
T ss_pred             c-CCC-eEEEEECCCceEEEEECCCCCc--eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC--------CceE
Confidence            9 874 777888888899 999886542  3445888899999999 677899999999999999983        4455


Q ss_pred             EEEcCCCCCeEEEEEecCCCEEEEEecCC----------cEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEE
Q 001366         1000 LTFSGHTNEKNFVGLSTADGYIACGSESN----------EVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVC 1069 (1092)
Q Consensus      1000 ~~l~~h~~~V~~v~~spdg~~lasgs~Dg----------~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva 1069 (1092)
                      ..+.+|...+.+++|||||++|++++.++          .|++||+..++ +..              ...|...+.+++
T Consensus       414 ~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~--------------l~~~~~~~~~~~  478 (1045)
T 1k32_A          414 VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFA--------------ATTENSHDYAPA  478 (1045)
T ss_dssp             EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEE--------------CSCSSSBEEEEE
T ss_pred             EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEE--------------eeCCCcccCCce
Confidence            56668888999999999999999887654          89999998765 221              134556788999


Q ss_pred             EeCCCCEEEEEecCCeEEEEEc
Q 001366         1070 WRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1070 ~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |+|||+.|++++.++..++|+.
T Consensus       479 ~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          479 FDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             ECTTSCEEEEEESCCCCCEECS
T ss_pred             EcCCCCEEEEEecccCCcCcch
Confidence            9999999999999888777763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=1.3e-17  Score=189.58  Aligned_cols=271  Identities=9%  Similarity=0.079  Sum_probs=181.1

Q ss_pred             CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEEC--CCcEEEEECCCCc--eEEEeeccCccE
Q 001366          799 VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADY--DGVVKLWDACTGQ--TVSHYIEHEKRA  874 (1092)
Q Consensus       799 ~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~--DgtV~IWD~~tg~--~i~~l~~h~~~V  874 (1092)
                      .++.|.+|+++....    .........+...+..++|+|+ +++++++..  ++.|++||+.++.  .+..+..+...+
T Consensus        14 ~~~~i~v~~~d~~tg----~~~~~~~~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p   88 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAK----TLTNDGLLAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP   88 (347)
T ss_dssp             SCCEEEEEEEETTTT----EEEEEEEEEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred             CCCCEEEEEEcCCCC----eEEEeeeeeccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC
Confidence            456788998864211    1111122334566788999998 664444432  6899999997775  455555677888


Q ss_pred             EEEEEecCCCCEEEEEe-CCCcEEEEecCC-Cc--eeeeEecC----------CceEEEEEccCCCeEEEEEECCCeEEE
Q 001366          875 WSVDFSQVHPTKLASGS-DDCSVKLWNINE-KN--SLATIKNI----------ANVCCVQFSAHSSHLLAFGSADYRTYC  940 (1092)
Q Consensus       875 ~sv~fsp~~~~~laSgs-~Dg~I~iWDl~~-~~--~l~~l~~~----------~~V~sl~fsp~~~~~latgs~Dg~I~v  940 (1092)
                      ..++|+| +++.|++++ .++.|.+||+.. +.  .+..+...          ..+.+++|+|++. +++++..++.|++
T Consensus        89 ~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~  166 (347)
T 3hfq_A           89 AYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYV  166 (347)
T ss_dssp             SEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred             EEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEE
Confidence            9999999 888888777 789999999963 22  23333321          2488999999997 8888888999999


Q ss_pred             EEcC-CCCc-ceEEecC-CCCCeEEEEEc-CCCEEEE-EECCCeEEEEEcCCCCCCCCCCCceeEEEcCCC------CCe
Q 001366          941 YDLR-NARA-PWCVLAG-HEKAVSYVKFL-DSGTLVT-ASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHT------NEK 1009 (1092)
Q Consensus       941 wDlr-~~~~-~~~~l~~-H~~~V~~v~fs-~~~~L~S-gs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~------~~V 1009 (1092)
                      ||+. +++. ....+.. ....+..++|+ +++++++ +..++.|.+|++.....    ....+..+....      ..+
T Consensus       167 ~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~  242 (347)
T 3hfq_A          167 YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG----AFTQLGIVKTIPADYTAHNGA  242 (347)
T ss_dssp             EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT----EEEEEEEEESSCTTCCSCCEE
T ss_pred             EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC----ceEEeeeeeecCCCCCCCCcc
Confidence            9998 3321 1111222 23467889999 5565554 55788999999873110    011223333322      347


Q ss_pred             EEEEEecCCCEE-EEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecC-CeEE
Q 001366         1010 NFVGLSTADGYI-ACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSS-GCIK 1087 (1092)
Q Consensus      1010 ~~v~~spdg~~l-asgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~D-G~V~ 1087 (1092)
                      ..++|+|+|++| +++..++.|.+|++.....+..+.           ....+...+.+++|+||+++|++++.+ +.|.
T Consensus       243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~-----------~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  311 (347)
T 3hfq_A          243 AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQ-----------QISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT  311 (347)
T ss_dssp             EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEE-----------EEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeE-----------EEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence            889999999977 556678999999986321111111           112234567899999999999888765 8999


Q ss_pred             EEEc
Q 001366         1088 VLQM 1091 (1092)
Q Consensus      1088 vW~l 1091 (1092)
                      +|++
T Consensus       312 v~~~  315 (347)
T 3hfq_A          312 LYAR  315 (347)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9964

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=2.9e-18  Score=209.90  Aligned_cols=265  Identities=10%  Similarity=0.016  Sum_probs=193.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCCCCcccccceeeecCC-CCeEEEEEecCCCCEEEEEEC---CCcE
Q 001366          779 ANVICSISFDRDEDHFAAAGV-SKKIKIFEFNALFNDSVDVYYPAVEMSNR-SKLSCVCWNNYIKNYLASADY---DGVV  853 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~-D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~LaSgs~---DgtV  853 (1092)
                      ..+|.+++|+|||++||+++. |++++||++...        .......+. ..+.+++|+|+  +++++++.   +...
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--------~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~   90 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--------ETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQH   90 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--------EEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCC--------CcEeeecccccccccccCCCC--eEEEEeccCCCCcce
Confidence            457999999999999999887 999999997541        111222334 57899999986  67777775   5556


Q ss_pred             EEEECCC---CceEEEeeccCccEEEEEEecCCCC-EEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEE
Q 001366          854 KLWDACT---GQTVSHYIEHEKRAWSVDFSQVHPT-KLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLL  929 (1092)
Q Consensus       854 ~IWD~~t---g~~i~~l~~h~~~V~sv~fsp~~~~-~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~l  929 (1092)
                      +||.+..   +... .+..+. .+...+|+| +++ ++++.+.++.+.+||+.+++......+..  .+++|+|||. ++
T Consensus        91 ~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~-~l  164 (582)
T 3o4h_A           91 ALFKVNTSRPGEEQ-RLEAVK-PMRILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGD-LI  164 (582)
T ss_dssp             EEEEEETTSTTCCE-ECTTSC-SBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETT-EE
T ss_pred             EEEEEeccCCCccc-cccCCC-CceeeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCC-EE
Confidence            6765533   3322 333222 234668888 553 33444444445599999887665555444  8899999996 77


Q ss_pred             EEEECC----CeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCC--eEEEEEcCCCCCCCCCCCceeEEE
Q 001366          930 AFGSAD----YRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDN--KLKLWDLKRTSHTGPSTNACSLTF 1002 (1092)
Q Consensus       930 atgs~D----g~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg--~I~vWDl~~~~~~~~~~~~~~~~l 1002 (1092)
                      ++++.+    +.|++||+.+++.  ..+..|...+..++|+ +++.|+++..++  .|.+||+.+        +... .+
T Consensus       165 a~~~~~~~~~~~i~~~d~~~g~~--~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~--------~~~~-~~  233 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLSSGGL--RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD--------GSVE-DL  233 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCC--EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT--------CCEE-EC
T ss_pred             EEEEEcCCCCeEEEEEcCCCCCc--eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC--------CcEE-Ec
Confidence            777766    7899999987753  4678899999999999 677888888888  899999983        3334 56


Q ss_pred             cCCCCCeEEEE--------EecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCC
Q 001366         1003 SGHTNEKNFVG--------LSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRS 1074 (1092)
Q Consensus      1003 ~~h~~~V~~v~--------~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~ 1074 (1092)
                      .+|...+..++        |+|||.++++++.|+.+++|++  ++.+.                 .....|.+++|+ ++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-----------------~~~~~v~~~~~s-dg  293 (582)
T 3o4h_A          234 ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-----------------APQGNHGRVVLW-RG  293 (582)
T ss_dssp             CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-----------------CCSSEEEEEEEE-TT
T ss_pred             cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-----------------cCCCceEEEEec-CC
Confidence            67777777777        9999999999999999999998  44322                 112468899999 99


Q ss_pred             CEEEEEecCCe---EEEEE
Q 001366         1075 DMVVAANSSGC---IKVLQ 1090 (1092)
Q Consensus      1075 ~~Lasgs~DG~---V~vW~ 1090 (1092)
                      .++++++.+..   |.+|+
T Consensus       294 ~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          294 KLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EEEEEEEETTEEEEEEEET
T ss_pred             EEEEEEcCCCCCCeEEEEc
Confidence            99999888754   55554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=8.3e-18  Score=189.87  Aligned_cols=261  Identities=10%  Similarity=0.050  Sum_probs=183.2

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCC-EEEEEECCCcEEEEECCCCc
Q 001366          784 SISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKN-YLASADYDGVVKLWDACTGQ  862 (1092)
Q Consensus       784 sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~LaSgs~DgtV~IWD~~tg~  862 (1092)
                      ++++++++.++++++.+++|.+||..+..      ............+..++|+|+ ++ ++++++.++.|.+||+.+++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~------~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~~t~~   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDT------VYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCK   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTE------EEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCc------EEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeCCCCc
Confidence            35678889999999999999999986521      011111122225789999998 55 45666678999999999998


Q ss_pred             eEEEeecc------CccEEEEEEecCCCCEEEEEeCC------------CcEEEEecCCCc---eeeeEecCCceEEEEE
Q 001366          863 TVSHYIEH------EKRAWSVDFSQVHPTKLASGSDD------------CSVKLWNINEKN---SLATIKNIANVCCVQF  921 (1092)
Q Consensus       863 ~i~~l~~h------~~~V~sv~fsp~~~~~laSgs~D------------g~I~iWDl~~~~---~l~~l~~~~~V~sl~f  921 (1092)
                      .+..+..+      ...+.+++|+| +++.+++++.+            +.|.+||+.+++   .+..+.+...+.+++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (349)
T 1jmx_B           77 NTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA  155 (349)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE
T ss_pred             EEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeE
Confidence            88777633      23378999999 88888888865            899999999854   3445556667899999


Q ss_pred             ccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCC-C-----------------------CeEEEEEcCCC--------
Q 001366          922 SAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHE-K-----------------------AVSYVKFLDSG--------  969 (1092)
Q Consensus       922 sp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~-~-----------------------~V~~v~fs~~~--------  969 (1092)
                      +|++. +++ ++  +.|++||+.+++. ...+..+. .                       ....++++++.        
T Consensus       156 s~dg~-l~~-~~--~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  230 (349)
T 1jmx_B          156 ADDGS-LYV-AG--PDIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD  230 (349)
T ss_dssp             CTTSC-EEE-ES--SSEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred             CCCCc-EEE-cc--CcEEEEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence            99996 544 43  3499999988753 33333221 0                       22334444211        


Q ss_pred             ----EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEec-CCCEEEEEecCCcEEEEeCCCCCceeee
Q 001366          970 ----TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLST-ADGYIACGSESNEVYAYHRSLPMPITSY 1044 (1092)
Q Consensus       970 ----~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~I~Iwd~~~~~~i~~~ 1044 (1092)
                          ++.....++.+++|++                 ..+...+..++|+| +|++++++  ++.|++||..+++.+..+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~  291 (349)
T 1jmx_B          231 LLYGYLSVDLKTGKTHTQEF-----------------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAA  291 (349)
T ss_dssp             EEEEEEEEETTTCCEEEEEE-----------------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             cceeEEEEeccCCcEEeccc-----------------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEE
Confidence                1112222334444443                 23455678899999 99998888  889999999988877665


Q ss_pred             eccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1045 KFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1045 ~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ..               ...+.+++|+|+++.|++++.++.|++|++
T Consensus       292 ~~---------------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          292 NL---------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             EC---------------SSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             cC---------------CCCccceEECCCCCEEEEecCCCeEEEEec
Confidence            42               123678999999999988889999999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.79  E-value=5.6e-17  Score=182.42  Aligned_cols=269  Identities=8%  Similarity=0.031  Sum_probs=187.6

Q ss_pred             EeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCCCCcccccceeeecC
Q 001366          749 GAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGV-SKKIKIFEFNALFNDSVDVYYPAVEMSN  827 (1092)
Q Consensus       749 ~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~-D~~I~Iwd~~~~~~~~~~~~~~~~~~~h  827 (1092)
                      +...++.+.+|+....+....+.     .+...+ +++|+|+|+++++++. ++.|.+||......      .......+
T Consensus        15 ~~~~~~~v~~~d~~~~~~~~~~~-----~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~------~~~~~~~~   82 (331)
T 3u4y_A           15 VEQHLRRISFFSTDTLEILNQIT-----LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP------KVVAIQEG   82 (331)
T ss_dssp             EEGGGTEEEEEETTTCCEEEEEE-----CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC------EEEEEEEC
T ss_pred             EecCCCeEEEEeCcccceeeeEE-----ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce------eEEecccC
Confidence            45578899999988776655443     334556 8999999997666665 88999999875211      01122234


Q ss_pred             CCCeEEEEEecCCCCEEEEEECCC---cEEEEECCCCceEEEeeccCccEEEEEEecCCCC-EEEEEeCCCc-EEEEecC
Q 001366          828 RSKLSCVCWNNYIKNYLASADYDG---VVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPT-KLASGSDDCS-VKLWNIN  902 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~Dg---tV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~-~laSgs~Dg~-I~iWDl~  902 (1092)
                      ..+..+++|+|+ +++|+++..++   .|++||+.+++.+..+..+ ..+.+++|+| +++ +++++..++. |.+|++.
T Consensus        83 ~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~  159 (331)
T 3u4y_A           83 QSSMADVDITPD-DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKID  159 (331)
T ss_dssp             SSCCCCEEECTT-SSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCccceEECCC-CCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC-CCCEEEEEecCCCceEEEEEEC
Confidence            455555999998 78887555443   8999999999988887654 4568999999 665 5566667788 9999998


Q ss_pred             CCcee-----eeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc--eEEecCCCCCeEEEEEc-CCCEEEEE
Q 001366          903 EKNSL-----ATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP--WCVLAGHEKAVSYVKFL-DSGTLVTA  974 (1092)
Q Consensus       903 ~~~~l-----~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~--~~~l~~H~~~V~~v~fs-~~~~L~Sg  974 (1092)
                      ....+     ..+.....+.+++|+|++..+++++..++.|++||+.+++..  +..+.. ...+..++|+ ++++++.+
T Consensus       160 ~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          160 ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVL  238 (331)
T ss_dssp             TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEE
T ss_pred             CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEE
Confidence            65443     223345668999999999766677777999999999876541  344443 3567889999 55656544


Q ss_pred             -ECCCeEEEEEcCCCCCCCCCCCceeEEEcCC----CC---CeEEEEEecCCCEEEEEe-cCCcEEEEeCCCCC
Q 001366          975 -STDNKLKLWDLKRTSHTGPSTNACSLTFSGH----TN---EKNFVGLSTADGYIACGS-ESNEVYAYHRSLPM 1039 (1092)
Q Consensus       975 -s~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h----~~---~V~~v~~spdg~~lasgs-~Dg~I~Iwd~~~~~ 1039 (1092)
                       ..++.|.+||+.+...      ..+..+..+    ..   ..+.++|+|+|++|++++ .++.|.||++....
T Consensus       239 ~~~~~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          239 TESTVDVFNFNQLSGTL------SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             CSSEEEEEEEETTTTEE------EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EcCCCEEEEEECCCCce------eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence             4578899999984321      112222222    11   224589999999876555 56799999987644

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=1.9e-16  Score=179.12  Aligned_cols=236  Identities=11%  Similarity=0.036  Sum_probs=182.2

Q ss_pred             CCCeEEEEEecCCCCEEEEEEC-------CCcEEEEECCCCceEEEeeccCccEEEEEEecCCCC-EEEEEeCCCcEEEE
Q 001366          828 RSKLSCVCWNNYIKNYLASADY-------DGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPT-KLASGSDDCSVKLW  899 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~-------DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~-~laSgs~Dg~I~iW  899 (1092)
                      ...+..++|+|+ ++.+++++.       ++.|.+||..+++.+..+.. ...+.+++|+| +++ +++++..++.|.+|
T Consensus        40 ~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           40 GKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINN-TTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             ESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEET-TTTEEEEEETTTTEEEEE
T ss_pred             ccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECC-CCCEEEEEecCCCEEEEE
Confidence            356789999998 666666664       56899999999998888764 34578999999 776 55666678999999


Q ss_pred             ecCCCceeeeEecCC----------ceEEEEEccCCCeEEEEE-ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-C
Q 001366          900 NINEKNSLATIKNIA----------NVCCVQFSAHSSHLLAFG-SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-D  967 (1092)
Q Consensus       900 Dl~~~~~l~~l~~~~----------~V~sl~fsp~~~~~latg-s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~  967 (1092)
                      |+.+++.+..+....          .+.+++|+|++..+++++ +.++.|++||+.+.+. ...+..+...+..++|+ +
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL-KTAIQNTGKMSTGLALDSE  195 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE-EEEECCCCTTCCCCEEETT
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce-EEEecCCCCccceEEECCC
Confidence            999999888887432          278999999997555554 3588999999987753 45555466668889998 6


Q ss_pred             CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC----CCCCeEEEEEecCCCEEEEEe-cCCcEEEEeCCCCCcee
Q 001366          968 SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG----HTNEKNFVGLSTADGYIACGS-ESNEVYAYHRSLPMPIT 1042 (1092)
Q Consensus       968 ~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~----h~~~V~~v~~spdg~~lasgs-~Dg~I~Iwd~~~~~~i~ 1042 (1092)
                      +++|++++.++.|.+||+.+        +.....+..    +...+..++|+|+|++++.++ .++.|++||..+++.+.
T Consensus       196 g~~l~~~~~~~~i~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          196 GKRLYTTNADGELITIDTAD--------NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA  267 (353)
T ss_dssp             TTEEEEECTTSEEEEEETTT--------TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCeEEEEECCC--------CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            77899999999999999983        344444443    556688899999999776665 45999999999988877


Q ss_pred             eeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEe-cCCeEEEEEc
Q 001366         1043 SYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAAN-SSGCIKVLQM 1091 (1092)
Q Consensus      1043 ~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs-~DG~V~vW~l 1091 (1092)
                      .+..+               . ...++|+|+++.|++++ .++.|.+|++
T Consensus       268 ~~~~~---------------~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          268 KVAAP---------------E-SLAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             EEECS---------------S-CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEcC---------------C-CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence            76531               1 14589999999666555 6899999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=1.1e-16  Score=181.77  Aligned_cols=251  Identities=8%  Similarity=0.069  Sum_probs=171.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEE-CCCcEEE
Q 001366          779 ANVICSISFDRDEDHFAAAGV--SKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD-YDGVVKL  855 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~--D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs-~DgtV~I  855 (1092)
                      ...+..++|+|+|++++++..  ++.|.+|++....     .........+...+.+++|+|+ +++|++++ .+++|++
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~~~~~~~p~~~a~spd-g~~l~~~~~~~~~v~v  112 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQT-----AHKLNTVVAPGTPPAYVAVDEA-RQLVYSANYHKGTAEV  112 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTE-----EEEEEEEEEESCCCSEEEEETT-TTEEEEEETTTTEEEE
T ss_pred             cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCc-----EEEeeeeecCCCCCEEEEECCC-CCEEEEEeCCCCEEEE
Confidence            345667999999994444432  6899999985411     1111122335677889999998 78777777 6799999


Q ss_pred             EECCC-Cc--eEEEeec---------cCccEEEEEEecCCCCEEEEEeCCCcEEEEecC-CCceee--eEe--cCCceEE
Q 001366          856 WDACT-GQ--TVSHYIE---------HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN-EKNSLA--TIK--NIANVCC  918 (1092)
Q Consensus       856 WD~~t-g~--~i~~l~~---------h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~-~~~~l~--~l~--~~~~V~s  918 (1092)
                      ||+.. +.  .+..+..         +...+.+++|+| ++++++++..++.|.+||+. +++...  .+.  ....+..
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            99963 32  3333321         123488999999 77777777778999999998 454322  222  2346888


Q ss_pred             EEEccCCCeEEEEEECCCeEEEEEcCC--CCc-ceEEecCCC------CCeEEEEEc-CCCEE-EEEECCCeEEEEEcCC
Q 001366          919 VQFSAHSSHLLAFGSADYRTYCYDLRN--ARA-PWCVLAGHE------KAVSYVKFL-DSGTL-VTASTDNKLKLWDLKR  987 (1092)
Q Consensus       919 l~fsp~~~~~latgs~Dg~I~vwDlr~--~~~-~~~~l~~H~------~~V~~v~fs-~~~~L-~Sgs~Dg~I~vWDl~~  987 (1092)
                      ++|+|+|..+++++..++.|.+||+..  ++. .+..+....      ..+..++|+ ++++| ++...++.|.+||+..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            999999975666677889999999874  221 112222222      458889999 55666 5666799999999972


Q ss_pred             CCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEec-CCcEEEEe--CCCCCce
Q 001366          988 TSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE-SNEVYAYH--RSLPMPI 1041 (1092)
Q Consensus       988 ~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~I~Iwd--~~~~~~i 1041 (1092)
                      ..     ....+..+..+...+..++|+|+|++|++++. ++.|.+|+  ..+++..
T Consensus       272 ~g-----~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          272 DG-----HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             GG-----CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CC-----cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            11     12345566666667889999999998888775 58999994  4455544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.76  E-value=1e-16  Score=200.61  Aligned_cols=278  Identities=14%  Similarity=0.027  Sum_probs=196.0

Q ss_pred             cCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCC-----CCCCCc
Q 001366          742 QNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNA-----LFNDSV  816 (1092)
Q Consensus       742 ~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~-----~~~~~~  816 (1092)
                      ++|+..+....++.+.+|+....+...      +..+...+.+++|+|||++||++ .|+.|++|++.+     ......
T Consensus        89 ~spd~~~~~~~~~~i~~~d~~~~~~~~------l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~  161 (706)
T 2z3z_A           89 DAGRGLVVLFTQGGLVGFDMLARKVTY------LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV  161 (706)
T ss_dssp             ETTTTEEEEEETTEEEEEETTTTEEEE------EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEES
T ss_pred             ECCCCeEEEEECCEEEEEECCCCceEE------ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEe
Confidence            466666666788999999987655432      23456678889999999999995 689999999875     221100


Q ss_pred             c-ccccee------eecCCCCeEEEEEecCCCCEEEEEE---------------------------------CCCcEEEE
Q 001366          817 D-VYYPAV------EMSNRSKLSCVCWNNYIKNYLASAD---------------------------------YDGVVKLW  856 (1092)
Q Consensus       817 ~-~~~~~~------~~~h~~~V~~v~~sp~~~~~LaSgs---------------------------------~DgtV~IW  856 (1092)
                      . ......      ...+...+.+++|+|+ +++|++++                                 .+..|++|
T Consensus       162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~  240 (706)
T 2z3z_A          162 TIDGTETLVYGQAVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIY  240 (706)
T ss_dssp             CSCCBTTEEESSCCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEE
T ss_pred             ccCCCCCeEcccchhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEE
Confidence            0 000000      0001122589999998 88898887                                 44789999


Q ss_pred             ECCCCceEEEee--ccCccEEEEEEecCCCCEEEEEeCCC-----cEEEEecCCCceeeeEe---cCC---ceEEEEEcc
Q 001366          857 DACTGQTVSHYI--EHEKRAWSVDFSQVHPTKLASGSDDC-----SVKLWNINEKNSLATIK---NIA---NVCCVQFSA  923 (1092)
Q Consensus       857 D~~tg~~i~~l~--~h~~~V~sv~fsp~~~~~laSgs~Dg-----~I~iWDl~~~~~l~~l~---~~~---~V~sl~fsp  923 (1092)
                      |+.+++......  .|...+.+++|+| +++.|++++.|+     .|.+||+.+++....+.   ...   .+.+++|+|
T Consensus       241 d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp  319 (706)
T 2z3z_A          241 HLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLP  319 (706)
T ss_dssp             ETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECT
T ss_pred             ECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeec
Confidence            999887654442  4667899999999 899899888776     89999999984444332   222   246789999


Q ss_pred             --CCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEE-EEEc-CCCEEEEEEC-CC----eEEEEEcCCCCCCCCC
Q 001366          924 --HSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSY-VKFL-DSGTLVTAST-DN----KLKLWDLKRTSHTGPS  994 (1092)
Q Consensus       924 --~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~-v~fs-~~~~L~Sgs~-Dg----~I~vWDl~~~~~~~~~  994 (1092)
                        +|. ++++++.|+.+++|++......+..+..|...+.. ++|+ +++.|+.++. ++    .|..||+.+.      
T Consensus       320 ~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~------  392 (706)
T 2z3z_A          320 GSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG------  392 (706)
T ss_dssp             TCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC------
T ss_pred             CCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC------
Confidence              885 88889999999999876333345677778777877 7998 5566665554 44    5666666532      


Q ss_pred             CCceeEEEcCCCCCeEEEEEecCCCEEEEEecC----CcEEEEeCCCCC
Q 001366          995 TNACSLTFSGHTNEKNFVGLSTADGYIACGSES----NEVYAYHRSLPM 1039 (1092)
Q Consensus       995 ~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D----g~I~Iwd~~~~~ 1039 (1092)
                        . ...+ .|...+.+++|||+|++|+.++.+    +.|++||...++
T Consensus       393 --~-~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          393 --K-TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             --C-CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             --C-ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence              1 2233 266778999999999988776543    569999998776

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.76  E-value=4.9e-16  Score=177.67  Aligned_cols=271  Identities=11%  Similarity=0.101  Sum_probs=180.9

Q ss_pred             CCEEEEEe----CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC----CcEEEEECCC--
Q 001366          791 EDHFAAAG----VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD----GVVKLWDACT--  860 (1092)
Q Consensus       791 g~~latgg----~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D----gtV~IWD~~t--  860 (1092)
                      ..++.+|+    .++.|.+|+++.....    ....... +...+..++|+|+ +++|++++.+    +.|.+|++..  
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~----~~~~~~~-~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGE----SLPLSDA-EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEK   86 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCC----EEEEEEE-ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCC----EEEeecc-cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCC
Confidence            33555554    4578999988642111    1111122 5677788999998 8888888876    8999998865  


Q ss_pred             Cc--eEEEeeccCccEEEEEEecCCCCEEEEEe-CCCcEEEEecCCCceeeeE----ec-----------CCceEEEEEc
Q 001366          861 GQ--TVSHYIEHEKRAWSVDFSQVHPTKLASGS-DDCSVKLWNINEKNSLATI----KN-----------IANVCCVQFS  922 (1092)
Q Consensus       861 g~--~i~~l~~h~~~V~sv~fsp~~~~~laSgs-~Dg~I~iWDl~~~~~l~~l----~~-----------~~~V~sl~fs  922 (1092)
                      ++  .+.....+...+..+++   +++.|++++ .+++|.+|++.....+..+    .+           ...+.+++|+
T Consensus        87 g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s  163 (361)
T 3scy_A           87 GTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT  163 (361)
T ss_dssp             TEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred             CcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC
Confidence            43  33344445556777777   456666555 6889999999765433221    11           1235889999


Q ss_pred             cCCCeEEEEEECCCeEEEEEcCCCCc------c------eEEecCCCCCeEEEEEc-CCCEEEEEE-CCCeEEEEEcCCC
Q 001366          923 AHSSHLLAFGSADYRTYCYDLRNARA------P------WCVLAGHEKAVSYVKFL-DSGTLVTAS-TDNKLKLWDLKRT  988 (1092)
Q Consensus       923 p~~~~~latgs~Dg~I~vwDlr~~~~------~------~~~l~~H~~~V~~v~fs-~~~~L~Sgs-~Dg~I~vWDl~~~  988 (1092)
                      |++..+++++..++.|++|++.....      .      ......+...+..++|+ +++++++++ .++.|.+||+.++
T Consensus       164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred             CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence            99975666666689999999875432      1      12223445668899999 556677666 6899999999732


Q ss_pred             CCCCCCCCceeEEE---cCCCCCeEEEEEecCCCEEEEEec--CCcEEEEeCC--CCCc--eeeeeccccCCCCCccccC
Q 001366          989 SHTGPSTNACSLTF---SGHTNEKNFVGLSTADGYIACGSE--SNEVYAYHRS--LPMP--ITSYKFGSIDPISGKETDD 1059 (1092)
Q Consensus       989 ~~~~~~~~~~~~~l---~~h~~~V~~v~~spdg~~lasgs~--Dg~I~Iwd~~--~~~~--i~~~~~~~~~~i~~~~~~~ 1059 (1092)
                      .      ...+..+   ..+......++|+|||++|+++..  ++.|.+|++.  .+..  +..+.              
T Consensus       244 ~------~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--------------  303 (361)
T 3scy_A          244 M------LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--------------  303 (361)
T ss_dssp             E------EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--------------
T ss_pred             c------eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--------------
Confidence            1      1112222   233455789999999998866654  5899999985  3332  22211              


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEe-cCCeEEEEEc
Q 001366         1060 DNGLFVSSVCWRRRSDMVVAAN-SSGCIKVLQM 1091 (1092)
Q Consensus      1060 ~h~~~V~sva~spd~~~Lasgs-~DG~V~vW~l 1091 (1092)
                      . +..+.+++|+|++++|++++ .++.|.+|++
T Consensus       304 ~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          304 T-GIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             C-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            1 34577899999999998888 6799999864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.75  E-value=2e-17  Score=195.54  Aligned_cols=215  Identities=13%  Similarity=0.112  Sum_probs=160.6

Q ss_pred             CcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC----------------ceeeeEecCC
Q 001366          851 GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK----------------NSLATIKNIA  914 (1092)
Q Consensus       851 gtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~----------------~~l~~l~~~~  914 (1092)
                      +.|++|+....       .....+..+++++ +..++++++.|+ +++|+....                .....+.+..
T Consensus        23 ~~vri~~~~~~-------~~~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (434)
T 2oit_A           23 KKVRIFDSPEE-------LPKERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF   93 (434)
T ss_dssp             CEEECSCCCSS-------CCCSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred             eeEEecCCccc-------cCCCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence            57888875321       1334578899999 778899999888 899876421                0112334566


Q ss_pred             ceEEEEEccCCCeEEE----EEECCCeEEEEEcCCC-----Cc--c---eEEecCCCCCeEEEEEcC--CCEEEEEECCC
Q 001366          915 NVCCVQFSAHSSHLLA----FGSADYRTYCYDLRNA-----RA--P---WCVLAGHEKAVSYVKFLD--SGTLVTASTDN  978 (1092)
Q Consensus       915 ~V~sl~fsp~~~~~la----tgs~Dg~I~vwDlr~~-----~~--~---~~~l~~H~~~V~~v~fs~--~~~L~Sgs~Dg  978 (1092)
                      .|.+++|+|++. +|+    +|+.|+.|++||+++.     +.  +   +..+.+|...|.+++|++  +..|++++.||
T Consensus        94 ~v~~l~~spdg~-~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           94 PIHHLALSCDNL-TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             CEEEEEECTTSC-EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred             cccEEEEcCCCC-EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence            799999999996 666    7888999999998754     11  1   345678999999999994  57899999999


Q ss_pred             eEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCcccc
Q 001366          979 KLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETD 1058 (1092)
Q Consensus       979 ~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~ 1058 (1092)
                      +|++||+++        +.......+|...|++++|+|+|.+|++|+.||.|++||.. ++....+...       ....
T Consensus       173 ~v~iwD~~~--------~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~-------~~~~  236 (434)
T 2oit_A          173 SIAVLQVTE--------TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP-------PFYE  236 (434)
T ss_dssp             CEEEEEESS--------SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC-------TTCC
T ss_pred             eEEEEEcCC--------CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC-------cccC
Confidence            999999983        34455666789999999999999999999999999999987 5544443210       0111


Q ss_pred             CCCCCCEEEEEEeCCCCEEEE-EecCCe------EEEEEc
Q 001366         1059 DDNGLFVSSVCWRRRSDMVVA-ANSSGC------IKVLQM 1091 (1092)
Q Consensus      1059 ~~h~~~V~sva~spd~~~Las-gs~DG~------V~vW~l 1091 (1092)
                      .+|...|.+++|++++.++++ ++.||.      +++|++
T Consensus       237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL  276 (434)
T ss_dssp             TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred             CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence            245568999999999988865 344543      889986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=3.4e-17  Score=200.34  Aligned_cols=232  Identities=10%  Similarity=-0.014  Sum_probs=171.4

Q ss_pred             CCCeEEEEEecCCCCEEEEEEC-CCcEEEEECCCCceEEEeeccC-ccEEEEEEecCCCCEEEEEeC---CCcEEEEecC
Q 001366          828 RSKLSCVCWNNYIKNYLASADY-DGVVKLWDACTGQTVSHYIEHE-KRAWSVDFSQVHPTKLASGSD---DCSVKLWNIN  902 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~-DgtV~IWD~~tg~~i~~l~~h~-~~V~sv~fsp~~~~~laSgs~---Dg~I~iWDl~  902 (1092)
                      ..+|.+++|+|| ++.||+++. ||+++||++.+++. ..+..|. ..+.+++|+| + .++++++.   +...++|.+.
T Consensus        21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEe
Confidence            457999999998 888888877 99999999966554 4555555 6899999999 6 77777775   5566776654


Q ss_pred             C--CceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECC--
Q 001366          903 E--KNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTD--  977 (1092)
Q Consensus       903 ~--~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~D--  977 (1092)
                      .  ......+.....+...+|+|++..++++++.++.+.+||+.+++.  ..+..+..  .+++|+ ++++|++++.|  
T Consensus        97 ~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~--~~l~~~~~--~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           97 TSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL--RELARLPG--FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             TTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE--EEEEEESS--CEEEEEEETTEEEEEEEEET
T ss_pred             ccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE--EEeecCCC--ceEEECCCCCEEEEEEEcCC
Confidence            3  222224444444557788998866555555555666999987653  22323333  788898 78888888877  


Q ss_pred             --CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCC--cEEEEeCCCCCceeeeeccccCCCC
Q 001366          978 --NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESN--EVYAYHRSLPMPITSYKFGSIDPIS 1053 (1092)
Q Consensus       978 --g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg--~I~Iwd~~~~~~i~~~~~~~~~~i~ 1053 (1092)
                        +.|.+||+.++        . ...+..|...+..++|||||++|++++.++  .|++||..+++.. ..         
T Consensus       173 ~~~~i~~~d~~~g--------~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~---------  233 (582)
T 3o4h_A          173 GRVSLFTSNLSSG--------G-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL---------  233 (582)
T ss_dssp             TEEEEEEEETTTC--------C-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC---------
T ss_pred             CCeEEEEEcCCCC--------C-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec---------
Confidence              78999998742        2 346778888899999999999999888888  8999999887755 22         


Q ss_pred             CccccCCCCCCEEEEE--------EeCCCCEEEEEecCCeEEEEEc
Q 001366         1054 GKETDDDNGLFVSSVC--------WRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1054 ~~~~~~~h~~~V~sva--------~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                           .+|...|.+++        |+|||.++++++.||.++||++
T Consensus       234 -----~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          234 -----ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             -----CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             -----cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                 12233344444        9999999999999999999985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.74  E-value=1.5e-15  Score=173.57  Aligned_cols=289  Identities=8%  Similarity=0.025  Sum_probs=182.6

Q ss_pred             CCeEEEEEcc--cceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCCCCCcccccceeeec
Q 001366          753 DGLCKYARYS--KFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS----KKIKIFEFNALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       753 D~~~k~w~~~--~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D----~~I~Iwd~~~~~~~~~~~~~~~~~~~  826 (1092)
                      ++.+.+|.+.  ..+.....   .+  +...+..++|+|+|++|++++.+    +.|.+|+++....   ..........
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~---~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---~~~~~~~~~~   97 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLS---DA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG---TLHLLNTQKT   97 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEE---EE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT---EEEEEEEEEC
T ss_pred             CCCEEEEEEeCCCCCEEEee---cc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC---cEEEeeEecc
Confidence            4567777763  22222111   12  45666779999999999999876    7999999865210   1111111222


Q ss_pred             CCCCeEEEEEecCCCCEEEEEE-CCCcEEEEECCCCceEEE------eec--------cCccEEEEEEecCCCCEEE-EE
Q 001366          827 NRSKLSCVCWNNYIKNYLASAD-YDGVVKLWDACTGQTVSH------YIE--------HEKRAWSVDFSQVHPTKLA-SG  890 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs-~DgtV~IWD~~tg~~i~~------l~~--------h~~~V~sv~fsp~~~~~la-Sg  890 (1092)
                      +......+++  + +++|++++ .+++|.+|++.+...+..      ..+        +...+.+++|+| +++.++ ++
T Consensus        98 ~~~~p~~~~~--d-g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~  173 (361)
T 3scy_A           98 MGADPCYLTT--N-GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADD  173 (361)
T ss_dssp             SSSCEEEEEE--C-SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEE
T ss_pred             CCCCcEEEEE--C-CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEe
Confidence            4456677777  4 66666666 578999999975432211      111        123358899999 887554 44


Q ss_pred             eCCCcEEEEecCCCce------e--------eeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc-ceEE---
Q 001366          891 SDDCSVKLWNINEKNS------L--------ATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA-PWCV---  952 (1092)
Q Consensus       891 s~Dg~I~iWDl~~~~~------l--------~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~-~~~~---  952 (1092)
                      ..++.|.+|++.....      +        ..+.....+..++|+|++..+++++..++.|.+||+.++.. .+..   
T Consensus       174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~  253 (361)
T 3scy_A          174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA  253 (361)
T ss_dssp             TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES
T ss_pred             CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec
Confidence            4589999999875442      2        12224566889999999974444444799999999986532 1122   


Q ss_pred             ecCCCCCeEEEEEc-CCCEEEEEEC--CCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEe-cCC
Q 001366          953 LAGHEKAVSYVKFL-DSGTLVTAST--DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGS-ESN 1028 (1092)
Q Consensus       953 l~~H~~~V~~v~fs-~~~~L~Sgs~--Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg 1028 (1092)
                      ...+...+..++|+ ++++|+++..  ++.|.+|++.....    ....+..+.. ...+..++|+|+|++|++++ .++
T Consensus       254 ~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g----~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~  328 (361)
T 3scy_A          254 DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG----TLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN  328 (361)
T ss_dssp             CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC----CEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred             CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC----cEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence            23344567899999 6667766665  48999999962110    1123344443 45678999999999888887 678


Q ss_pred             cEEEEeCC--CCCceeeeeccccCCCCCccccCCCCCCEEEEEEe
Q 001366         1029 EVYAYHRS--LPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWR 1071 (1092)
Q Consensus      1029 ~I~Iwd~~--~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~s 1071 (1092)
                      .|.+|.+.  +++......             ..+...+.+|+|.
T Consensus       329 ~v~v~~~d~~~g~~~~~~~-------------~~~~~~p~~v~~~  360 (361)
T 3scy_A          329 VIQIFERDQATGLLTDIKK-------------DIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEEEECTTTCCEEECSC-------------CEECSSEEEEEEE
T ss_pred             CEEEEEEECCCCcEeecce-------------eeeCCCCeEEEEc
Confidence            99997544  444332211             1123458888886

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.71  E-value=3.3e-16  Score=196.45  Aligned_cols=315  Identities=7%  Similarity=-0.030  Sum_probs=205.5

Q ss_pred             cCCCCcEE-eEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCC
Q 001366          742 QNPTDRLG-AFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGV---------SKKIKIFEFNAL  811 (1092)
Q Consensus       742 ~~~~~~l~-~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~---------D~~I~Iwd~~~~  811 (1092)
                      +.|++.+. ...|+.+++|+....+....+......  ...|.+++|+|||++||+++.         ++.|++||+.+.
T Consensus        23 ~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g  100 (719)
T 1z68_A           23 WISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMK--SVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG  100 (719)
T ss_dssp             ESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHH--TTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             ECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccc--ccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence            55655443 336889999998877665444321110  124789999999999999886         789999998752


Q ss_pred             CCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEe-eccCccE----------------
Q 001366          812 FNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHY-IEHEKRA----------------  874 (1092)
Q Consensus       812 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l-~~h~~~V----------------  874 (1092)
                      ...  . ...     ....+.+++|+|+ ++.||+++ |+.|++||+.+++..... .++...|                
T Consensus       101 ~~~--~-~~~-----l~~~~~~~~~SPD-G~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A          101 EFV--R-GNE-----LPRPIQYLCWSPV-GSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             EEC--C-SSC-----CCSSBCCEEECSS-TTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred             ccc--c-cee-----cCcccccceECCC-CCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence            210  0 000     1256889999998 88888875 789999999888765432 2333322                


Q ss_pred             -EEEEEecCCCCEEEEEeCCC----------------------------------cEEEEecCCCcee--eeE-------
Q 001366          875 -WSVDFSQVHPTKLASGSDDC----------------------------------SVKLWNINEKNSL--ATI-------  910 (1092)
Q Consensus       875 -~sv~fsp~~~~~laSgs~Dg----------------------------------~I~iWDl~~~~~l--~~l-------  910 (1092)
                       .+++|+| |++.|++++.|.                                  .|++||+.+++..  ..+       
T Consensus       171 ~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~  249 (719)
T 1z68_A          171 KYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA  249 (719)
T ss_dssp             SCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred             cccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence             4899999 999999988663                                  7889999987753  111       


Q ss_pred             ecCCceEEEEEccCCCeEEEEEECC----CeEEEEE----cCCCCcceEEe----cCCCCCeE-----EEEEc-CCCEEE
Q 001366          911 KNIANVCCVQFSAHSSHLLAFGSAD----YRTYCYD----LRNARAPWCVL----AGHEKAVS-----YVKFL-DSGTLV  972 (1092)
Q Consensus       911 ~~~~~V~sl~fsp~~~~~latgs~D----g~I~vwD----lr~~~~~~~~l----~~H~~~V~-----~v~fs-~~~~L~  972 (1092)
                      .+...+.+++|+|++ .++++....    ..|++||    +.+++.. ..+    .+|...+.     .+.|+ +++.|+
T Consensus       250 ~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  327 (719)
T 1z68_A          250 SSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGWAGGFFVSTPVFSYDAISYY  327 (719)
T ss_dssp             TSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred             CCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCceEccccCCccEECCCCCeEE
Confidence            144568999999996 566664432    3588999    7665432 222    46777776     78998 555443


Q ss_pred             --EEECCC--eEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEeCCC--CCc-
Q 001366          973 --TASTDN--KLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSES-----NEVYAYHRSL--PMP- 1040 (1092)
Q Consensus       973 --Sgs~Dg--~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D-----g~I~Iwd~~~--~~~- 1040 (1092)
                        ++..+|  .|.+||+..        +. ...+..+...+..+.++ +++.|+..+.+     +.+++|.+..  +.. 
T Consensus       328 ~~~~~~~g~~~l~~~~~~~--------~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~  397 (719)
T 1z68_A          328 KIFSDKDGYKHIHYIKDTV--------EN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS  397 (719)
T ss_dssp             EEEECTTSCEEEEEESSCS--------TT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCC
T ss_pred             EEEEccCCceEEEEEECCC--------Cc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCC
Confidence              344566  466666652        12 34555666668888777 88877766654     7888987653  211 


Q ss_pred             eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEE-EecC--CeEEEEEc
Q 001366         1041 ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVA-ANSS--GCIKVLQM 1091 (1092)
Q Consensus      1041 i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Las-gs~D--G~V~vW~l 1091 (1092)
                      ...+.          ....+|...+..+.|+|+++.|+. ++..  ..+.+|++
T Consensus       398 ~~~l~----------~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~  441 (719)
T 1z68_A          398 KKCVT----------CHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG  441 (719)
T ss_dssp             EEESS----------TTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred             ceecc----------CccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence            11110          011235567889999999987774 3333  45667754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=9.3e-16  Score=176.49  Aligned_cols=295  Identities=10%  Similarity=0.033  Sum_probs=188.1

Q ss_pred             ecCCCCCEEE-----EEEcCCCCEEEEEeC-CCc--EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEE
Q 001366          775 FNNSANVICS-----ISFDRDEDHFAAAGV-SKK--IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLAS  846 (1092)
Q Consensus       775 l~~h~~~V~s-----l~fspdg~~latgg~-D~~--I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaS  846 (1092)
                      +..|...+..     .+|+|||++||.++. ++.  |.+||+.+..       .......+...+.++.|+|+ ++.|+.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-------~~~lt~~~~~~~~~~~~spd-g~~l~~   97 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-------ATQLTEGRGDNTFGGFLSPD-DDALFY   97 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-------EEECCCSSCBCSSSCEECTT-SSEEEE
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-------eEEeeeCCCCCccceEEcCC-CCEEEE
Confidence            4455555555     789999999999987 664  6677765411       11112233444456789998 889999


Q ss_pred             EECCCcEEEEECCCCceEEEeeccCccEEEEEE--ecCCCCEEEEE----------------------eCCCcEEEEecC
Q 001366          847 ADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDF--SQVHPTKLASG----------------------SDDCSVKLWNIN  902 (1092)
Q Consensus       847 gs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~f--sp~~~~~laSg----------------------s~Dg~I~iWDl~  902 (1092)
                      ++.++.|++||+.+++....+..+...+....|  +| ++..++..                      +.+..|.+||+.
T Consensus        98 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  176 (388)
T 3pe7_A           98 VKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK  176 (388)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred             EeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence            999999999999999877777666665544444  67 77777642                      245789999999


Q ss_pred             CCceeeeEecCCceEEEEEcc-CCCeEEEEEECC------CeEEEEEcCCCCcceEEecCCC--CCeEEEEEc-CCCEEE
Q 001366          903 EKNSLATIKNIANVCCVQFSA-HSSHLLAFGSAD------YRTYCYDLRNARAPWCVLAGHE--KAVSYVKFL-DSGTLV  972 (1092)
Q Consensus       903 ~~~~l~~l~~~~~V~sl~fsp-~~~~~latgs~D------g~I~vwDlr~~~~~~~~l~~H~--~~V~~v~fs-~~~~L~  972 (1092)
                      +++......+...+..++|+| ++. .|+....+      ..|+++|+....  ...+..+.  ..+..+.|+ +++.|+
T Consensus       177 ~g~~~~l~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~  253 (388)
T 3pe7_A          177 TGESTVILQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDGSALV  253 (388)
T ss_dssp             TCCEEEEEEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTSSCEE
T ss_pred             CCceEEeecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCCCEEE
Confidence            987766666777899999999 885 66655543      378888876543  23444444  257788999 556565


Q ss_pred             EEEC-CC----eEEEEEcCCCCCCCCCCCceeEEEcCCCCC---eEEEEEecCCCEEEEE---------ecCCcEEEEeC
Q 001366          973 TAST-DN----KLKLWDLKRTSHTGPSTNACSLTFSGHTNE---KNFVGLSTADGYIACG---------SESNEVYAYHR 1035 (1092)
Q Consensus       973 Sgs~-Dg----~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~---V~~v~~spdg~~lasg---------s~Dg~I~Iwd~ 1035 (1092)
                      ..+. ++    .|.+||+.++..      ..+..+.++...   ...+.|+|||+.|+..         ..+..|++||.
T Consensus       254 ~~~~~~~~~~~~l~~~d~~~g~~------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          254 YVSYLKGSPDRFIYSADPETLEN------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             EEEEETTCCCEEEEEECTTTCCE------EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             EEecCCCCCcceEEEEecCCCce------EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence            4432 22    399999985321      123333321100   1123799999987754         45678999999


Q ss_pred             CCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEe-cCCeEEEEEc
Q 001366         1036 SLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAAN-SSGCIKVLQM 1091 (1092)
Q Consensus      1036 ~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs-~DG~V~vW~l 1091 (1092)
                      ..++....... . .  .-.....+....+.+++|+|||+.|+.++ .+|...||.+
T Consensus       328 ~~~~~~~l~~~-~-~--~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          328 KNGTQHRVARH-D-T--SWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             TTTEEEEEEEC-C-C--CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cCCceEEeccc-c-C--cccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            87654322110 0 0  00000011112467789999999887655 5787777754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.70  E-value=9.4e-17  Score=201.40  Aligned_cols=271  Identities=10%  Similarity=0.078  Sum_probs=181.3

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCC---CCeEEEEEecCCCCEEEEEEC---------CC
Q 001366          784 SISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNR---SKLSCVCWNNYIKNYLASADY---------DG  851 (1092)
Q Consensus       784 sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~---~~V~~v~~sp~~~~~LaSgs~---------Dg  851 (1092)
                      +++|+|+|+++++ +.|++|++||+.+...       ......+.   ..|.+++|+|+ +++|++++.         |+
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~   90 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQS-------YTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTA   90 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCE-------EEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcE-------EEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecce
Confidence            5789999965555 4699999999875211       11111121   14889999998 888888876         79


Q ss_pred             cEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec--CCce-------------
Q 001366          852 VVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN--IANV-------------  916 (1092)
Q Consensus       852 tV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~--~~~V-------------  916 (1092)
                      +|++||+.+++.+... .....+.+++|+| +++.||+++ |+.|++||+.+++.......  ...|             
T Consensus        91 ~i~~~d~~~g~~~~~~-~l~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~  167 (719)
T 1z68_A           91 TYYIYDLSNGEFVRGN-ELPRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM  167 (719)
T ss_dssp             EEEEEETTTTEECCSS-CCCSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred             EEEEEECCCCccccce-ecCcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence            9999999988762111 1135688999999 899998886 78999999998876543321  1112             


Q ss_pred             ----EEEEEccCCCeEEEEEECCC----------------------------------eEEEEEcCCCCcc--eE-----
Q 001366          917 ----CCVQFSAHSSHLLAFGSADY----------------------------------RTYCYDLRNARAP--WC-----  951 (1092)
Q Consensus       917 ----~sl~fsp~~~~~latgs~Dg----------------------------------~I~vwDlr~~~~~--~~-----  951 (1092)
                          .+++|+|||. .|++++.|.                                  .|++||+.+++..  +.     
T Consensus       168 ~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  246 (719)
T 1z68_A          168 LATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA  246 (719)
T ss_dssp             TCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred             ccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence                4899999996 677766542                                  7899999876431  11     


Q ss_pred             EecCCCCCeEEEEEcCCCEEE-EEECC----CeEEEEE----cCCCCCCCCCCCceeEEE----cCCCCCeE-----EEE
Q 001366          952 VLAGHEKAVSYVKFLDSGTLV-TASTD----NKLKLWD----LKRTSHTGPSTNACSLTF----SGHTNEKN-----FVG 1013 (1092)
Q Consensus       952 ~l~~H~~~V~~v~fs~~~~L~-Sgs~D----g~I~vWD----l~~~~~~~~~~~~~~~~l----~~h~~~V~-----~v~ 1013 (1092)
                      .+.+|...+..++|++++.++ +....    ..|.+||    +.++        .+...+    .+|...+.     .+.
T Consensus       247 ~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (719)
T 1z68_A          247 MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW--------DCPKTQEHIEESRTGWAGGFFVSTPV  318 (719)
T ss_dssp             HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE--------ECCGGGEEEEECSSSCSSSSSCCCCE
T ss_pred             cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC--------ceEEEEecccccCCceEccccCCccE
Confidence            134688889999999556544 43322    2488899    6532        222222    35666666     789


Q ss_pred             EecCCCEEEE--EecCC--cEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecC-----C
Q 001366         1014 LSTADGYIAC--GSESN--EVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSS-----G 1084 (1092)
Q Consensus      1014 ~spdg~~las--gs~Dg--~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~D-----G 1084 (1092)
                      |+|||+.|+.  +..++  .|++|+...++.. .              ...+...|..+.++ ++..|+..+.+     +
T Consensus       319 ~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~--------------lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~  382 (719)
T 1z68_A          319 FSYDAISYYKIFSDKDGYKHIHYIKDTVENAI-Q--------------ITSGKWEAINIFRV-TQDSLFYSSNEFEEYPG  382 (719)
T ss_dssp             ECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-E--------------CSCSSSCEEEEEEE-CSSEEEEEESCGGGCTT
T ss_pred             ECCCCCeEEEEEEccCCceEEEEEECCCCceE-e--------------cccCceEEEEEEEE-eCCEEEEEEecCCCCCc
Confidence            9999995543  44555  5666776554421 1              12233457777777 87777766654     8


Q ss_pred             eEEEEEc
Q 001366         1085 CIKVLQM 1091 (1092)
Q Consensus      1085 ~V~vW~l 1091 (1092)
                      .+++|.+
T Consensus       383 ~~~l~~~  389 (719)
T 1z68_A          383 RRNIYRI  389 (719)
T ss_dssp             CBEEEEE
T ss_pred             eEEEEEE
Confidence            8899875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.70  E-value=3e-15  Score=168.78  Aligned_cols=272  Identities=8%  Similarity=-0.004  Sum_probs=179.3

Q ss_pred             EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCCCCcccccceeeec
Q 001366          748 LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFA-AAGVSKKIKIFEFNALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       748 l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~la-tgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~  826 (1092)
                      ++...++.+.+|+....+....+..    +....+..++|+|+|++++ ++..++.|.+||+.+..   .   .......
T Consensus        15 v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~---~---~~~~~~~   84 (349)
T 1jmx_B           15 IVTNYPNNLHVVDVASDTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK---N---TFHANLS   84 (349)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE---E---EEEEESC
T ss_pred             EEeCCCCeEEEEECCCCcEEEEEec----CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc---E---EEEEEcc
Confidence            3566889999999988776655442    1212466799999998654 55578999999986521   0   0011111


Q ss_pred             C-----CCCeEEEEEecCCCCEEEEEECC------------CcEEEEECCCCc---eEEEeeccCccEEEEEEecCCCCE
Q 001366          827 N-----RSKLSCVCWNNYIKNYLASADYD------------GVVKLWDACTGQ---TVSHYIEHEKRAWSVDFSQVHPTK  886 (1092)
Q Consensus       827 h-----~~~V~~v~~sp~~~~~LaSgs~D------------gtV~IWD~~tg~---~i~~l~~h~~~V~sv~fsp~~~~~  886 (1092)
                      +     ...+.+++|+|+ +++|++++.+            +.|.+||+.+++   .+..+. +...+.+++|+| +++ 
T Consensus        85 ~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~-  160 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS-  160 (349)
T ss_dssp             CSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-
T ss_pred             cccccccccccceEECCC-CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC-CCc-
Confidence            1     223788999998 7888888765            999999998854   334444 344688999999 777 


Q ss_pred             EEEEeCCCcEEEEecCCCceeeeEecCC-------------------------ceEEEEEccCCCeEEEEEECCCeEEEE
Q 001366          887 LASGSDDCSVKLWNINEKNSLATIKNIA-------------------------NVCCVQFSAHSSHLLAFGSADYRTYCY  941 (1092)
Q Consensus       887 laSgs~Dg~I~iWDl~~~~~l~~l~~~~-------------------------~V~sl~fsp~~~~~latgs~Dg~I~vw  941 (1092)
                      +++++.  .|.+||+.+++.+..+....                         ...++++++++............+..+
T Consensus       161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            555544  49999999998887765332                         345566766542111111111122235


Q ss_pred             EcCCCCcceEEecCCCCCeEEEEEcC--CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC
Q 001366          942 DLRNARAPWCVLAGHEKAVSYVKFLD--SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG 1019 (1092)
Q Consensus       942 Dlr~~~~~~~~l~~H~~~V~~v~fs~--~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~ 1019 (1092)
                      |..+.+.....+..+...+..++|++  +++++++  ++.|.+||+.+        +..+..+.. ...+.+++|+|+|+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~--------~~~~~~~~~-~~~~~~~~~s~dg~  307 (349)
T 1jmx_B          239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ--------RKLIKAANL-DHTYYCVAFDKKGD  307 (349)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT--------TEEEEEEEC-SSCCCEEEECSSSS
T ss_pred             eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc--------CeEEEEEcC-CCCccceEECCCCC
Confidence            55544432223334566788999985  4566666  88999999983        444455543 23467899999999


Q ss_pred             EEEEEecCCcEEEEeCCCCCceeeeec
Q 001366         1020 YIACGSESNEVYAYHRSLPMPITSYKF 1046 (1092)
Q Consensus      1020 ~lasgs~Dg~I~Iwd~~~~~~i~~~~~ 1046 (1092)
                      +|++++.++.|++||..+++.+..++.
T Consensus       308 ~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          308 KLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             CEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEecCCCeEEEEeccccceeeeeec
Confidence            888888899999999999988887764

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.70  E-value=1.5e-18  Score=210.38  Aligned_cols=129  Identities=17%  Similarity=-0.011  Sum_probs=91.1

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCc-h------hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-S------DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      ..++.|.||++...+      ..++.|.+...... .      ......++..++...+|||++............+   
T Consensus       345 G~G~fg~Vy~~~~~~------~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~---  415 (540)
T 3en9_A          345 GKGAEADIKRDSYLD------FDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKR---  415 (540)
T ss_dssp             ---CCEEEEEEECSS------CEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTE---
T ss_pred             eeCCCEEEEEEEECC------CeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccE---
Confidence            445789999995533      22223222211111 0      1122466777788889999994322222222222   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   ++||||+|++|.++|+.         ++.|+.||++||+|||++||+||||||+|||++.  .+||+
T Consensus       416 -------------lVmE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~  471 (540)
T 3en9_A          416 -------------IMMSYINGKLAKDVIED---------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYII  471 (540)
T ss_dssp             -------------EEEECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEEC
T ss_pred             -------------EEEECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEE
Confidence                         48999999999999975         5689999999999999999999999999999988  99999


Q ss_pred             ccccccccc
Q 001366          372 GPIIQKETL  380 (1092)
Q Consensus       372 Dfg~~~~~~  380 (1092)
                      |||+++...
T Consensus       472 DFGla~~~~  480 (540)
T 3en9_A          472 DFGLGKISN  480 (540)
T ss_dssp             CCTTCEECC
T ss_pred             ECccCEECC
Confidence            999998755

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=4.4e-15  Score=170.72  Aligned_cols=243  Identities=7%  Similarity=0.053  Sum_probs=164.9

Q ss_pred             CCCeEEEEEecCCCCEEEEEECCCcEEEEECC-CCceEEEeecc-CccEEEEEEecCCCCE--EEEEe------------
Q 001366          828 RSKLSCVCWNNYIKNYLASADYDGVVKLWDAC-TGQTVSHYIEH-EKRAWSVDFSQVHPTK--LASGS------------  891 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~-tg~~i~~l~~h-~~~V~sv~fsp~~~~~--laSgs------------  891 (1092)
                      ...+..++|+|+ +++|++++.+ .|.+||+. +++........ ...+.+++|+| +++.  +++++            
T Consensus        39 ~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           39 DEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceee
Confidence            456789999998 8888899888 99999997 77655433211 12355689999 7773  45553            


Q ss_pred             -CCCcEEEEecC-CCceeeeEe-----cCCceEEEEEccCCCeEEEEEE-CCCeEEEEEcC-CCCcc-eEEec--CCCCC
Q 001366          892 -DDCSVKLWNIN-EKNSLATIK-----NIANVCCVQFSAHSSHLLAFGS-ADYRTYCYDLR-NARAP-WCVLA--GHEKA  959 (1092)
Q Consensus       892 -~Dg~I~iWDl~-~~~~l~~l~-----~~~~V~sl~fsp~~~~~latgs-~Dg~I~vwDlr-~~~~~-~~~l~--~H~~~  959 (1092)
                       .++++.+|++. .++....+.     +...+.+++|+|+|. +++++. .++.|++||+. +++.. +..+.  .|...
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~  194 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCC
Confidence             68999999997 465544443     346799999999996 455544 57899999998 55421 22232  24667


Q ss_pred             eEEEEEc-CCCEEEEEEC-CCeEEEEEcCCCCCCCCCCCcee---EEEc-------CCCC------CeEEEE-EecCCCE
Q 001366          960 VSYVKFL-DSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACS---LTFS-------GHTN------EKNFVG-LSTADGY 1020 (1092)
Q Consensus       960 V~~v~fs-~~~~L~Sgs~-Dg~I~vWDl~~~~~~~~~~~~~~---~~l~-------~h~~------~V~~v~-~spdg~~ 1020 (1092)
                      +..++|+ +++++++++. ++.|.+|++...      .+...   ..+.       +|..      .+..++ |+|||++
T Consensus       195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~------~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~  268 (365)
T 1jof_A          195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPA------THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTT------TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred             CCEeEECCCCCEEEEEECCCCeEEEEEEeCC------CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCE
Confidence            9999999 5567777764 789999987621      11211   1121       2222      478899 9999998


Q ss_pred             EEEEecC-C-----cEEEEeCC-CCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC---CCCEEEEEecC-CeEEEE
Q 001366         1021 IACGSES-N-----EVYAYHRS-LPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR---RSDMVVAANSS-GCIKVL 1089 (1092)
Q Consensus      1021 lasgs~D-g-----~I~Iwd~~-~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp---d~~~Lasgs~D-G~V~vW 1089 (1092)
                      |++++.+ +     .|.+|++. .++.......           ...+...+..++|+|   ++++|++++.+ +.|+||
T Consensus       269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~-----------~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~  337 (365)
T 1jof_A          269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFL-----------SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE-----------EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             EEEECCCCCCCCCCeEEEEEECCCCCEEEeeee-----------eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence            8766543 3     89999986 4443221100           011223355789999   89999999875 899999


Q ss_pred             Ec
Q 001366         1090 QM 1091 (1092)
Q Consensus      1090 ~l 1091 (1092)
                      ++
T Consensus       338 ~~  339 (365)
T 1jof_A          338 RW  339 (365)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.65  E-value=3.3e-14  Score=179.34  Aligned_cols=310  Identities=12%  Similarity=0.005  Sum_probs=192.8

Q ss_pred             ccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCC
Q 001366          741 IQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS---------KKIKIFEFNAL  811 (1092)
Q Consensus       741 ~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D---------~~I~Iwd~~~~  811 (1092)
                      .|.|++.+..+.|+.+++|+....+....+..+.+..+.....+++|||||++||.++.+         +.+.|||+.+.
T Consensus        23 ~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~  102 (740)
T 4a5s_A           23 RWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR  102 (740)
T ss_dssp             EECSSSEEEEEETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             EECCCCcEEEEcCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC
Confidence            467777665555999999999877665544432222232233458899999999999876         45679998762


Q ss_pred             CCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEE-eeccCccE----------------
Q 001366          812 FNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSH-YIEHEKRA----------------  874 (1092)
Q Consensus       812 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~-l~~h~~~V----------------  874 (1092)
                      ..        .....+...+..++|+|+ ++.||.++ |+.|++||+.+++..+. ..++...+                
T Consensus       103 ~~--------~~l~~~~~~~~~~~~SPd-G~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A          103 QL--------ITEERIPNNTQWVTWSPV-GHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EE--------CCSSCCCTTEEEEEECSS-TTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             cE--------EEcccCCCcceeeEECCC-CCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            21        112235678999999999 78888774 78999999988875432 22333222                


Q ss_pred             -EEEEEecCCCCEEEEEeCCC------------------------------------cEEEEecCC---Cce--eeeEe-
Q 001366          875 -WSVDFSQVHPTKLASGSDDC------------------------------------SVKLWNINE---KNS--LATIK-  911 (1092)
Q Consensus       875 -~sv~fsp~~~~~laSgs~Dg------------------------------------~I~iWDl~~---~~~--l~~l~-  911 (1092)
                       ..+.|+| |++.||.++.|.                                    +|.+||+.+   +.+  ...+. 
T Consensus       173 ~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          173 YSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence             3489999 899998876432                                    478899988   732  22332 


Q ss_pred             ------cCCceEEEEEccCCCeEEEEEEC----CCeEEEEEcCCCC-------cceEEecCCCCCeE-----EEEEc-CC
Q 001366          912 ------NIANVCCVQFSAHSSHLLAFGSA----DYRTYCYDLRNAR-------APWCVLAGHEKAVS-----YVKFL-DS  968 (1092)
Q Consensus       912 ------~~~~V~sl~fsp~~~~~latgs~----Dg~I~vwDlr~~~-------~~~~~l~~H~~~V~-----~v~fs-~~  968 (1092)
                            +...+..++|+|+|. +++....    +..|++||+.+++       .....-.+|...|.     .+.|+ ++
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence                  344589999999995 5554433    3479999998876       11111245666554     78898 56


Q ss_pred             CEEE-EEEC-C--CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecC-----CcEEEEe--CCC
Q 001366          969 GTLV-TAST-D--NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSES-----NEVYAYH--RSL 1037 (1092)
Q Consensus       969 ~~L~-Sgs~-D--g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D-----g~I~Iwd--~~~ 1037 (1092)
                      +.|+ ..+. +  ..|.+||+...        . ...+......+..+. .++++.|+..+..     +...||.  +..
T Consensus       331 ~~l~~~~s~~~G~~~l~~~~~~~~--------~-~~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g  400 (740)
T 4a5s_A          331 NSFYKIISNEEGYRHICYFQIDKK--------D-CTFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLID  400 (740)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTCS--------S-CEESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred             CEEEEEEEcCCCceEEEEEECCCC--------c-eEecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence            6666 5653 3  35888888732        1 234444444555543 2456655544432     3344554  333


Q ss_pred             CCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec
Q 001366         1038 PMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS 1082 (1092)
Q Consensus      1038 ~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~ 1082 (1092)
                      +.....+..          ...+....+..+.|+|++.+++....
T Consensus       401 ~~~~~~lt~----------~~~~~~~~~~~~~~S~dg~~~~~~~s  435 (740)
T 4a5s_A          401 YTKVTCLSC----------ELNPERCQYYSVSFSKEAKYYQLRCS  435 (740)
T ss_dssp             EEEEEESST----------TTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred             CCcceeecc----------ccCCCCCceEEEEECCCCCEEEEEeC
Confidence            222111110          00122356889999999998765443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.65  E-value=3.8e-14  Score=162.84  Aligned_cols=243  Identities=12%  Similarity=0.094  Sum_probs=164.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCCCCCcccccceeeecCCCCeEEEEEecCCCC--EEEEEE-------
Q 001366          779 ANVICSISFDRDEDHFAAAGVSKKIKIFEFN-ALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKN--YLASAD-------  848 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~D~~I~Iwd~~-~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~--~LaSgs-------  848 (1092)
                      ...+..++|+|+|++|++++.+ .|.+|++. ...   .  . ........+.+.+++|+|+ ++  ++++++       
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~---~--~-~~~~~~~~g~~~~~~~spd-g~~l~~~~~~~~~~~~~  110 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE---I--V-HEASHPIGGHPRANDADTN-TRAIFLLAAKQPPYAVY  110 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE---E--E-EEEEEECCSSGGGGCTTSC-CEEEEEEECSSTTCCEE
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC---E--E-EeeEeecCCCCccEEECCC-CCEEEEEEecCCcceec
Confidence            3457789999999999999888 99999985 311   1  0 0111111123566889998 66  355553       


Q ss_pred             ------CCCcEEEEECC-CCceEEEee----ccCccEEEEEEecCCCCEEEEEe-CCCcEEEEecC-CCcee--eeEe--
Q 001366          849 ------YDGVVKLWDAC-TGQTVSHYI----EHEKRAWSVDFSQVHPTKLASGS-DDCSVKLWNIN-EKNSL--ATIK--  911 (1092)
Q Consensus       849 ------~DgtV~IWD~~-tg~~i~~l~----~h~~~V~sv~fsp~~~~~laSgs-~Dg~I~iWDl~-~~~~l--~~l~--  911 (1092)
                            .+|++.+|++. +++....+.    .+...+.+++|+| +++.+++++ .++.|.+||+. +++..  ..+.  
T Consensus       111 ~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~  189 (365)
T 1jof_A          111 ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAP  189 (365)
T ss_dssp             EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred             cceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence                  68999999997 466544443    2456789999999 888777765 46899999998 67643  3343  


Q ss_pred             -cCCceEEEEEccCCCeEEEEEE-CCCeEEEEEcC--CCCcc-----eEEec----CCCC------CeEEEE-Ec-CCCE
Q 001366          912 -NIANVCCVQFSAHSSHLLAFGS-ADYRTYCYDLR--NARAP-----WCVLA----GHEK------AVSYVK-FL-DSGT  970 (1092)
Q Consensus       912 -~~~~V~sl~fsp~~~~~latgs-~Dg~I~vwDlr--~~~~~-----~~~l~----~H~~------~V~~v~-fs-~~~~  970 (1092)
                       +...+..++|+|+|. ++++++ .++.|.+|++.  +++..     +..+.    +|..      .+..++ |+ ++++
T Consensus       190 ~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~  268 (365)
T 1jof_A          190 DPGDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             STTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred             CCCCCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCE
Confidence             245689999999997 555554 57899999875  33321     11121    2232      588999 98 5667


Q ss_pred             EEEEECC-C-----eEEEEEcCCCCCCCCCCCceeE---EEcCCCCCeEEEEEec---CCCEEEEEec-CCcEEEEeCCC
Q 001366          971 LVTASTD-N-----KLKLWDLKRTSHTGPSTNACSL---TFSGHTNEKNFVGLST---ADGYIACGSE-SNEVYAYHRSL 1037 (1092)
Q Consensus       971 L~Sgs~D-g-----~I~vWDl~~~~~~~~~~~~~~~---~l~~h~~~V~~v~~sp---dg~~lasgs~-Dg~I~Iwd~~~ 1037 (1092)
                      |++++.+ +     +|.+|++..       .+....   ....+...+..++|+|   +|++|++++. ++.|.||++..
T Consensus       269 l~v~~~~~~~~~~~~i~v~~~~~-------~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          269 MFASSRANKFELQGYIAGFKLRD-------CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECT-------TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEEECCCCCCCCCCeEEEEEECC-------CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            7766543 3     899999962       122221   2333455567889999   8999998886 48999998865


Q ss_pred             C
Q 001366         1038 P 1038 (1092)
Q Consensus      1038 ~ 1038 (1092)
                      .
T Consensus       342 ~  342 (365)
T 1jof_A          342 E  342 (365)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=1.6e-13  Score=151.23  Aligned_cols=235  Identities=11%  Similarity=0.117  Sum_probs=173.7

Q ss_pred             CCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeec------cCccEEEEEEecCCCCEEEEEeC-CCcEEEEe
Q 001366          828 RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE------HEKRAWSVDFSQVHPTKLASGSD-DCSVKLWN  900 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~------h~~~V~sv~fsp~~~~~laSgs~-Dg~I~iWD  900 (1092)
                      -....+++++++ +.++++.+.++.|++||.. ++.+..+..      |...+.++++.+.++.++++... ++.|.+||
T Consensus        29 ~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           29 FTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             BSCEEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             cCCCceEEECCC-CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            456789999997 7888888889999999986 666666642      34568899995436666666643 89999999


Q ss_pred             cCCCceeeeEec--CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEec--CCCCCeEEEEEcCC-CEEEEEE
Q 001366          901 INEKNSLATIKN--IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA--GHEKAVSYVKFLDS-GTLVTAS  975 (1092)
Q Consensus       901 l~~~~~l~~l~~--~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~--~H~~~V~~v~fs~~-~~L~Sgs  975 (1092)
                       .+++.+..+..  ...+.+++++|++. ++++...++.|++||... + .+..+.  ++...+..|+++++ ..+++.+
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence             56777776653  35689999999985 777777889999999653 2 233332  45567899999854 4455556


Q ss_pred             CCCeEEEEEcCCCCCCCCCCCceeEEEcCC--CCCeEEEEEecCCCEEEEEecCC-cEEEEeCCCCCceeeeeccccCCC
Q 001366          976 TDNKLKLWDLKRTSHTGPSTNACSLTFSGH--TNEKNFVGLSTADGYIACGSESN-EVYAYHRSLPMPITSYKFGSIDPI 1052 (1092)
Q Consensus       976 ~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~spdg~~lasgs~Dg-~I~Iwd~~~~~~i~~~~~~~~~~i 1052 (1092)
                      .++.|.+||..         +..+..+..+  ...+..++++++|.++++...++ .|.+|+. .++.+..+..      
T Consensus       183 ~~~~i~~~~~~---------g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~------  246 (286)
T 1q7f_A          183 RAHCVKVFNYE---------GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES------  246 (286)
T ss_dssp             GGTEEEEEETT---------CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE------
T ss_pred             CCCEEEEEcCC---------CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc------
Confidence            78999999975         2344555433  46788999999999888888886 9999995 4555554431      


Q ss_pred             CCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1053 SGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1053 ~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                            ......+.+++|+|+++++++ +.|+.|+||++
T Consensus       247 ------~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          247 ------KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             ------SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             ------cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence                  112235789999999987777 67999999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=5e-15  Score=170.30  Aligned_cols=283  Identities=10%  Similarity=0.025  Sum_probs=177.6

Q ss_pred             CEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCCCCcccccceeeecCCCC-eEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          781 VICSISFDRDEDHFAAAGVS---KKIKIFEFNALFNDSVDVYYPAVEMSNRSK-LSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       781 ~V~sl~fspdg~~latgg~D---~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      .+.+++|+|||++||.+...   ..|.+|++.....        .....+... ..++.|+|+ ++.|+.++.++.|++|
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~--------~~l~~~~~~~~~~~~~spd-g~~l~~~~~~~~l~~~  107 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA--------VQLTEGKGDNTFGGFISTD-ERAFFYVKNELNLMKV  107 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE--------EECCCSSCBCTTTCEECTT-SSEEEEEETTTEEEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE--------EEeecCCCCccccceECCC-CCEEEEEEcCCcEEEE
Confidence            36678999999998877543   3677778754210        111112222 334789998 8899999999999999


Q ss_pred             ECCCCceEEEeeccCccEEE-------------------EEEecCCCCEEEEE-----eCCCcEEEEecCCCceeeeEec
Q 001366          857 DACTGQTVSHYIEHEKRAWS-------------------VDFSQVHPTKLASG-----SDDCSVKLWNINEKNSLATIKN  912 (1092)
Q Consensus       857 D~~tg~~i~~l~~h~~~V~s-------------------v~fsp~~~~~laSg-----s~Dg~I~iWDl~~~~~l~~l~~  912 (1092)
                      |+.+++....+..+......                   +.|+| +++.++.+     ..+..|.+||+.+++......+
T Consensus       108 d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~  186 (396)
T 3c5m_A          108 DLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD  186 (396)
T ss_dssp             ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE
T ss_pred             ECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccC
Confidence            99988766555544442222                   34566 55554433     3567899999998887666667


Q ss_pred             CCceEEEEEcc-CCCeEEEEEECC------CeEEEEEcCCCCcceEEecCC--CCCeEEEEEc-CCCEEEEEECC-----
Q 001366          913 IANVCCVQFSA-HSSHLLAFGSAD------YRTYCYDLRNARAPWCVLAGH--EKAVSYVKFL-DSGTLVTASTD-----  977 (1092)
Q Consensus       913 ~~~V~sl~fsp-~~~~~latgs~D------g~I~vwDlr~~~~~~~~l~~H--~~~V~~v~fs-~~~~L~Sgs~D-----  977 (1092)
                      ...+..+.|+| ++. .|+..+.+      ..|++||+....  ...+..+  ...+..+.|+ +++.|+.++.+     
T Consensus       187 ~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD  263 (396)
T ss_dssp             SSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred             CcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence            77899999999 664 45554433      468899987543  2333333  2357888999 56667766544     


Q ss_pred             CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEec-CCCEEEEEe----------------cCCcEEEEeCCCCCc
Q 001366          978 NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLST-ADGYIACGS----------------ESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       978 g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs----------------~Dg~I~Iwd~~~~~~ 1040 (1092)
                      +.|.+||+.++        ... .+.... ... +.|+| +|++|++++                .+..|++||...++.
T Consensus       264 ~~l~~~d~~~g--------~~~-~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          264 RVIYKANPETL--------ENE-EVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             EEEEEECTTTC--------CEE-EEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             ceEEEEECCCC--------CeE-EeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            45999998743        211 111111 233 89999 999888765                347899999887654


Q ss_pred             eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec-CCeEEEEEc
Q 001366         1041 ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS-SGCIKVLQM 1091 (1092)
Q Consensus      1041 i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~-DG~V~vW~l 1091 (1092)
                      ...... . ....  ....+....+..++|+|+++.|+.++. +|...||.+
T Consensus       333 ~~l~~~-~-~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          333 QKLCKH-S-TSWD--VLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             CEEEEC-C-CCCC--CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EEccCC-C-Cccc--cccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            321110 0 0000  000000112556789999998887764 566666653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.61  E-value=1.9e-13  Score=157.29  Aligned_cols=285  Identities=12%  Similarity=0.094  Sum_probs=193.1

Q ss_pred             cCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCCCCcccccc
Q 001366          752 FDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAG----------VSKKIKIFEFNALFNDSVDVYYP  821 (1092)
Q Consensus       752 ~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg----------~D~~I~Iwd~~~~~~~~~~~~~~  821 (1092)
                      .|+.+.+|+..+.++...+..     +..+  .++|+|||+++.+++          .+++|.+||..+..   .....+
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~-----g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~---~~~~i~   98 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPT-----AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT---FEKEIS   98 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEEC-----CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC---EEEEEE
T ss_pred             ccCeEEEEECCCCeEEEEecC-----CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc---EEEEEE
Confidence            467888999877776655443     3334  799999999998886          36789999986421   100000


Q ss_pred             e--eeecCCCCeEEEEEecCCCCEEEEEEC--CCcEEEEECCCCceEEE-eeccCccEEEEEEecCCCCEEEEEeCCCcE
Q 001366          822 A--VEMSNRSKLSCVCWNNYIKNYLASADY--DGVVKLWDACTGQTVSH-YIEHEKRAWSVDFSQVHPTKLASGSDDCSV  896 (1092)
Q Consensus       822 ~--~~~~h~~~V~~v~~sp~~~~~LaSgs~--DgtV~IWD~~tg~~i~~-l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I  896 (1092)
                      .  ....+......++++|+ +++|++++.  +++|.+||+.+++.+.. +. +. ..+.+.+.|.....+++.+.||.+
T Consensus        99 ~~~~~~~~g~~p~~i~~spd-g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~  175 (361)
T 2oiz_A           99 LPPKRVQGLNYDGLFRQTTD-GKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGL  175 (361)
T ss_dssp             ECTTBCCBCCCGGGEEECTT-SSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSE
T ss_pred             cCccccccCCCcceEEECCC-CCEEEEECCCCCCeEEEEECCCCcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcE
Confidence            0  00012345678999998 788887764  68999999999988877 54 22 234567788555788999999999


Q ss_pred             EEEecCC-Cceeee------EecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcce-EEecC------CC----C
Q 001366          897 KLWNINE-KNSLAT------IKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPW-CVLAG------HE----K  958 (1092)
Q Consensus       897 ~iWDl~~-~~~l~~------l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~-~~l~~------H~----~  958 (1092)
                      .+|++.. ++....      +........+.++|++. .++..+.++.|+++|+......+ ..+.-      +.    .
T Consensus       176 ~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  254 (361)
T 2oiz_A          176 LTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKD-KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG  254 (361)
T ss_dssp             EEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSS-EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred             EEEEECCCCcEeeeccccceEcCCCCceEEEecccCC-EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence            9999875 554422      22122222344466765 45566788999999997543211 11110      01    1


Q ss_pred             CeEEEEEc-CCCEEEEEEC-----------CCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEec
Q 001366          959 AVSYVKFL-DSGTLVTAST-----------DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE 1026 (1092)
Q Consensus       959 ~V~~v~fs-~~~~L~Sgs~-----------Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~ 1026 (1092)
                      ....++|+ +++.++.+..           .++|.+||+.        +.+.+.++..+.  ...++|+|+|++|++++.
T Consensus       255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~--------t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~  324 (361)
T 2oiz_A          255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK--------TKQRVARIPGRD--ALSMTIDQQRNLMLTLDG  324 (361)
T ss_dssp             CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT--------TTEEEEEEECTT--CCEEEEETTTTEEEEECS
T ss_pred             CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC--------CCcEEEEEecCC--eeEEEECCCCCEEEEeCC
Confidence            11126777 5566665543           3589999998        456788888776  899999999999988887


Q ss_pred             CCcEEEEeCCCC--CceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCC
Q 001366         1027 SNEVYAYHRSLP--MPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD 1075 (1092)
Q Consensus      1027 Dg~I~Iwd~~~~--~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~ 1075 (1092)
                       +.|.|||..++  +.+.++.              .++.....++++|+|.
T Consensus       325 -~~v~v~D~~t~~l~~~~~i~--------------~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 -GNVNVYDISQPEPKLLRTIE--------------GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             -SCEEEEECSSSSCEEEEEET--------------TSCSSEEEEEECCCSC
T ss_pred             -CeEEEEECCCCcceeeEEec--------------cCCCCcEEEEecCCCC
Confidence             99999999998  7776642              2355678999999986

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.61  E-value=2.3e-13  Score=150.00  Aligned_cols=244  Identities=11%  Similarity=0.105  Sum_probs=174.8

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccce--eeecCCCCeEEEEEecCCCCEEEEEEC-CCc
Q 001366          776 NNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPA--VEMSNRSKLSCVCWNNYIKNYLASADY-DGV  852 (1092)
Q Consensus       776 ~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~--~~~~h~~~V~~v~~sp~~~~~LaSgs~-Dgt  852 (1092)
                      .++-..+.+++++++|+++++...++.|.+||.....   .. ....  ....+...+.++++.+..+.++++... ++.
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~---~~-~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF---KF-QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE---EE-EECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE---EE-EecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            3556678999999999999998889999999975311   00 0000  001233568899995433666665533 899


Q ss_pred             EEEEECCCCceEEEeec-cCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec---CCceEEEEEccCCCeE
Q 001366          853 VKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN---IANVCCVQFSAHSSHL  928 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~-h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~---~~~V~sl~fsp~~~~~  928 (1092)
                      |++|| .+++.+..+.. +...+.++++.+ ++.++++...++.|.+||.. ++.+..+..   ...+.+++++|++. +
T Consensus       102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~-l  177 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-I  177 (286)
T ss_dssp             EEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-E
T ss_pred             EEEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-E
Confidence            99999 57777777643 345689999999 78888888888999999964 566666642   34689999999984 7


Q ss_pred             EEEEECCCeEEEEEcCCCCcceEEecCC--CCCeEEEEEc-CCCEEEEEECCC-eEEEEEcCCCCCCCCCCCceeEEEcC
Q 001366          929 LAFGSADYRTYCYDLRNARAPWCVLAGH--EKAVSYVKFL-DSGTLVTASTDN-KLKLWDLKRTSHTGPSTNACSLTFSG 1004 (1092)
Q Consensus       929 latgs~Dg~I~vwDlr~~~~~~~~l~~H--~~~V~~v~fs-~~~~L~Sgs~Dg-~I~vWDl~~~~~~~~~~~~~~~~l~~ 1004 (1092)
                      +++...++.|++||... + .+..+..+  ...+..|+++ ++..+++...++ .|.+||..         +..+..+..
T Consensus       178 ~v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~---------g~~~~~~~~  246 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD---------GQLISALES  246 (286)
T ss_dssp             EEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT---------SCEEEEEEE
T ss_pred             EEEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC---------CCEEEEEcc
Confidence            77777899999999753 2 23444333  3678999998 555666666675 99999964         344555554


Q ss_pred             CC--CCeEEEEEecCCCEEEEEecCCcEEEEeCCCCC
Q 001366         1005 HT--NEKNFVGLSTADGYIACGSESNEVYAYHRSLPM 1039 (1092)
Q Consensus      1005 h~--~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~ 1039 (1092)
                      +.  ..+..++++|+|.++++ +.|+.|++|+.....
T Consensus       247 ~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          247 KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            43  34778999999987777 579999999876543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.61  E-value=4.5e-14  Score=175.15  Aligned_cols=283  Identities=9%  Similarity=-0.012  Sum_probs=183.8

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCCCCCcccccceeeecCCCCeE---------EEEEe--cCC
Q 001366          774 EFNNSANVICSISFDRDEDHFAAA--GVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLS---------CVCWN--NYI  840 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latg--g~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~---------~v~~s--p~~  840 (1092)
                      .+.+|...|.+++|++++-+++++  +.++...||.....  .     .......+...+.         ...|+  |+ 
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD-   89 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--G-----AEESALPAPWNVRNRVFEYSGFPWAGVPRPA-   89 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--S-----CEEESSCTTCCBCCCGGGTCCCCEEEECCSS-
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--C-----CcceeCCCCccccccccccCCccceeeeecC-
Confidence            355788899999999887777777  56888999986321  1     1111222333444         56666  88 


Q ss_pred             CCE-EEEEEC-CCcEEEEECC--CCceEEEeec-----cCccEEEEEEecCCCCEEEEEeCC----------CcEEEEec
Q 001366          841 KNY-LASADY-DGVVKLWDAC--TGQTVSHYIE-----HEKRAWSVDFSQVHPTKLASGSDD----------CSVKLWNI  901 (1092)
Q Consensus       841 ~~~-LaSgs~-DgtV~IWD~~--tg~~i~~l~~-----h~~~V~sv~fsp~~~~~laSgs~D----------g~I~iWDl  901 (1092)
                      ++. |+.++. +..|.+|++.  .+.....+..     |...+.+++|+| +++.|++++.|          ..|.+||+
T Consensus        90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~  168 (662)
T 3azo_A           90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPL  168 (662)
T ss_dssp             SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred             CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence            555 555543 5667777765  2034455655     677899999999 89999988877          58999999


Q ss_pred             CC------CceeeeE-ecCCceEEEEEccCCCeEEEEEECC--------CeEEEEEcC-CCC--cceEEecCCCCCeEEE
Q 001366          902 NE------KNSLATI-KNIANVCCVQFSAHSSHLLAFGSAD--------YRTYCYDLR-NAR--APWCVLAGHEKAVSYV  963 (1092)
Q Consensus       902 ~~------~~~l~~l-~~~~~V~sl~fsp~~~~~latgs~D--------g~I~vwDlr-~~~--~~~~~l~~H~~~V~~v  963 (1092)
                      .+      +...... .+...+..++|+|||. .|++++.+        ..|++||+. ++.  .......+|...+..+
T Consensus       169 ~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~  247 (662)
T 3azo_A          169 DGSAAADRSAVRELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA  247 (662)
T ss_dssp             TSTTTTCGGGSEESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred             CCCccccCCceeEEEecCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence            88      5544433 4456788899999996 66666544        489999998 441  3334445567889999


Q ss_pred             EEc-CCCEEEEEECCC--eEEEEEcCCCCCCCCCCCceeEEEcCCCCC--------eEEEEEecCCCEEEEEecCCcEEE
Q 001366          964 KFL-DSGTLVTASTDN--KLKLWDLKRTSHTGPSTNACSLTFSGHTNE--------KNFVGLSTADGYIACGSESNEVYA 1032 (1092)
Q Consensus       964 ~fs-~~~~L~Sgs~Dg--~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~--------V~~v~~spdg~~lasgs~Dg~I~I 1032 (1092)
                      .|+ ++..+++++.++  .|.+||+.+.        ........+...        +..++|+|++.++++++. +.++|
T Consensus       248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~--------~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l  318 (662)
T 3azo_A          248 EWAPDGSLIVATDRTGWWNLHRVDPATG--------AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL  318 (662)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECTTTC--------CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred             EECCCCeEEEEECCCCCeEEEEEECCCC--------ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence            999 566677777888  5555555422        211111122111        457899999999999998 99999


Q ss_pred             E--eCCCCCceeeeeccccCCCCCccccCCCCCCEEEE-EEeCCCCEEEEEecCCeEEEEE
Q 001366         1033 Y--HRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSV-CWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1033 w--d~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sv-a~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      |  +...+. +..+              ..+...+..+ +++++.-++++++.+....||.
T Consensus       319 ~~~d~~~~~-~~~l--------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          319 GILDPESGE-LVDA--------------AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             EEEETTTTE-EEEC--------------CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCc-EEEe--------------cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence            9  444333 3222              2334556666 5554444455556665555554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.60  E-value=4.6e-14  Score=178.01  Aligned_cols=243  Identities=8%  Similarity=0.000  Sum_probs=162.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCC-----CCeEEEEEecCCCCEEEEEECC------
Q 001366          782 ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNR-----SKLSCVCWNNYIKNYLASADYD------  850 (1092)
Q Consensus       782 V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~sp~~~~~LaSgs~D------  850 (1092)
                      ..++.|+|||++++++  |++|++||+.+...       ......|.     .....+.|+|| +++|+.++.+      
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~r~   88 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-------SVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRH   88 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCE-------EEEECTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECSSS
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCce-------EEEEechhhhhhcccccceEECCC-CCEEEEEECCeeeEEE
Confidence            4468999999999886  89999999876321       11122222     12345899998 8888888876      


Q ss_pred             ---CcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cC-Cce---------
Q 001366          851 ---GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NI-ANV---------  916 (1092)
Q Consensus       851 ---gtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~-~~V---------  916 (1092)
                         +.+.+||+.+++.. .+..|...+..++|+| +++.||.++ |+.|.+||+.++.....-. .. ..+         
T Consensus        89 ~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           89 SYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             CEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             ccceEEEEEECCCCcEE-EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence               55679999998754 4667788899999999 899898885 6899999999877543221 11 112         


Q ss_pred             --------EEEEEccCCCeEEEEEECC-C-----------------------------------eEEEEEcCC---CCc-
Q 001366          917 --------CCVQFSAHSSHLLAFGSAD-Y-----------------------------------RTYCYDLRN---ARA-  948 (1092)
Q Consensus       917 --------~sl~fsp~~~~~latgs~D-g-----------------------------------~I~vwDlr~---~~~-  948 (1092)
                              ..+.|+|||. .||+++.| .                                   .|++||+.+   ++. 
T Consensus       166 ~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~  244 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA  244 (740)
T ss_dssp             HHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC
T ss_pred             cchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc
Confidence                    3589999996 66665422 1                                   588899987   531 


Q ss_pred             ceEEec------CCCCCeEEEEEcC-CCEEEEEEC----CCeEEEEEcCCCCCCCCCCCceeEEE--cCCCCCeE-----
Q 001366          949 PWCVLA------GHEKAVSYVKFLD-SGTLVTAST----DNKLKLWDLKRTSHTGPSTNACSLTF--SGHTNEKN----- 1010 (1092)
Q Consensus       949 ~~~~l~------~H~~~V~~v~fs~-~~~L~Sgs~----Dg~I~vWDl~~~~~~~~~~~~~~~~l--~~h~~~V~----- 1010 (1092)
                      ....+.      +|...+..++|++ ++.++....    +..|.+||+.++....  ....+..+  .+|...+.     
T Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~--~~~~~~~l~~~~~~~~v~~~~~~  322 (740)
T 4a5s_A          245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW--NCLVARQHIEMSTTGWVGRFRPS  322 (740)
T ss_dssp             CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE--EECGGGCEEEECSSSCSSSSSCC
T ss_pred             eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc--ceeEEEEeeeccCCceEccCcCC
Confidence            122333      3788899999994 444544332    3479999998542000  00011112  44655554     


Q ss_pred             EEEEecCCCEEE-EEec-C--CcEEEEeCCCCCc
Q 001366         1011 FVGLSTADGYIA-CGSE-S--NEVYAYHRSLPMP 1040 (1092)
Q Consensus      1011 ~v~~spdg~~la-sgs~-D--g~I~Iwd~~~~~~ 1040 (1092)
                      .+.|+|||+.|+ ..+. +  ..|++|+...+..
T Consensus       323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             CceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence            689999999877 6664 3  4688888776543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.59  E-value=4e-13  Score=152.17  Aligned_cols=240  Identities=7%  Similarity=0.006  Sum_probs=178.1

Q ss_pred             CCCeEEEEEecCCCCEEEEEECC------------------------CcEEEEECCCCceEEEee-ccCccEEEEEEecC
Q 001366          828 RSKLSCVCWNNYIKNYLASADYD------------------------GVVKLWDACTGQTVSHYI-EHEKRAWSVDFSQV  882 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~D------------------------gtV~IWD~~tg~~i~~l~-~h~~~V~sv~fsp~  882 (1092)
                      -..+.+|+++++ ++++++.+.+                        ++|.+||..+++.+..+. ++-..+..++++| 
T Consensus        23 l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-  100 (329)
T 3fvz_A           23 PGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-  100 (329)
T ss_dssp             CSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-
T ss_pred             cCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-
Confidence            467899999998 8888888777                        479999999998877665 3445789999999 


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCc-eeeeEec----------CCceEEEEEcc-CCCeEEEEEE-CCCeEEEEEcCCCCcc
Q 001366          883 HPTKLASGSDDCSVKLWNINEKN-SLATIKN----------IANVCCVQFSA-HSSHLLAFGS-ADYRTYCYDLRNARAP  949 (1092)
Q Consensus       883 ~~~~laSgs~Dg~I~iWDl~~~~-~l~~l~~----------~~~V~sl~fsp-~~~~~latgs-~Dg~I~vwDlr~~~~~  949 (1092)
                      +++++++.+.++.|++||..... .+..+..          -...+.|+|+| ++ .++++.+ .++.|++||. ++. .
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~-~  177 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGK-F  177 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECT-TSC-E
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCC-E
Confidence            88899998899999999986542 5555531          23588999999 55 5777776 6999999994 333 2


Q ss_pred             eEEecC----------CCCCeEEEEEcC--CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc--CCCCCeEEEEEe
Q 001366          950 WCVLAG----------HEKAVSYVKFLD--SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS--GHTNEKNFVGLS 1015 (1092)
Q Consensus       950 ~~~l~~----------H~~~V~~v~fs~--~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~s 1015 (1092)
                      +..+..          +-..+..|++++  +..+++...++.|++||..        ++..+..+.  .+...+..++|+
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~--------~G~~~~~~~~~~~~~~~~~~~~~  249 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD--------TKEFVREIKHASFGRNVFAISYI  249 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT--------TCCEEEEECCTTTTTCEEEEEEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC--------CCcEEEEEeccccCCCcceeeec
Confidence            334422          223488999984  3455666678899999987        345566663  456678899999


Q ss_pred             c------CCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEE
Q 001366         1016 T------ADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVL 1089 (1092)
Q Consensus      1016 p------dg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW 1089 (1092)
                      |      +|..+++.+.+..|++|+..+++.+..+..           ...+...+.+|+++|+|.++++...++.|++|
T Consensus       250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-----------~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~  318 (329)
T 3fvz_A          250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-----------VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF  318 (329)
T ss_dssp             TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC-----------SSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred             CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC-----------CCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence            9      333333333456899999998887776531           12345678999999999888888899999999


Q ss_pred             Ec
Q 001366         1090 QM 1091 (1092)
Q Consensus      1090 ~l 1091 (1092)
                      ++
T Consensus       319 ~~  320 (329)
T 3fvz_A          319 TL  320 (329)
T ss_dssp             EE
T ss_pred             eC
Confidence            85

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.59  E-value=6.3e-13  Score=150.52  Aligned_cols=241  Identities=9%  Similarity=0.042  Sum_probs=178.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEEcCCCCCCCcccccceeeecCCCCeEEE
Q 001366          779 ANVICSISFDRDEDHFAAAGVS------------------------KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCV  834 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~D------------------------~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v  834 (1092)
                      -..|.+|+++|+|+++++...+                        ++|.+||..+..   .   .......+-....++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~---~---~~~~~~~~~~~p~gi   96 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE---I---LQSSGKNLFYLPHGL   96 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC---E---EEEECTTTCSSEEEE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe---E---EeccCCCccCCceEE
Confidence            3568999999999999988877                        468999875411   1   001111234578899


Q ss_pred             EEecCCCCEEEEEECCCcEEEEECCCCc-eEEEe---------eccCccEEEEEEecCCCCEEEEEe-CCCcEEEEecCC
Q 001366          835 CWNNYIKNYLASADYDGVVKLWDACTGQ-TVSHY---------IEHEKRAWSVDFSQVHPTKLASGS-DDCSVKLWNINE  903 (1092)
Q Consensus       835 ~~sp~~~~~LaSgs~DgtV~IWD~~tg~-~i~~l---------~~h~~~V~sv~fsp~~~~~laSgs-~Dg~I~iWDl~~  903 (1092)
                      +++++ ++++++.+.++.|++||..... .+..+         .++-....+|+++|.++.++++.+ .++.|++|| .+
T Consensus        97 a~d~~-g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A           97 SIDTD-GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             EECTT-SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             EECCC-CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            99997 7788888889999999975442 45555         234456899999986678888886 699999999 56


Q ss_pred             CceeeeEecC-----------CceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEe--cCCCCCeEEEEEcCCCE
Q 001366          904 KNSLATIKNI-----------ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVL--AGHEKAVSYVKFLDSGT  970 (1092)
Q Consensus       904 ~~~l~~l~~~-----------~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l--~~H~~~V~~v~fs~~~~  970 (1092)
                      +..+..+...           .....++++|++..++++...++.|++||..+++. +..+  ..+...+..++|+++..
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~pg~~  253 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-VREIKHASFGRNVFAISYIPGFL  253 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECCTTTTTCEEEEEEETTEE
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-EEEEeccccCCCcceeeecCCEE
Confidence            7777766521           23889999999557888888999999999986643 3444  34667788999987333


Q ss_pred             EEEEE-------CCCeEEEEEcCCCCCCCCCCCceeEEE---cCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCC
Q 001366          971 LVTAS-------TDNKLKLWDLKRTSHTGPSTNACSLTF---SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       971 L~Sgs-------~Dg~I~vWDl~~~~~~~~~~~~~~~~l---~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                      +++.+       .+.+|++||..+        +..+..+   .++......++++|+|.++++...++.|++|+..
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~~--------g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFSS--------GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETTT--------CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EEeCCCEEeccCCCcEEEEEEcCC--------CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            33332       344899999873        4556666   3677789999999999888888899999999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.58  E-value=3e-13  Score=155.66  Aligned_cols=257  Identities=10%  Similarity=0.072  Sum_probs=175.9

Q ss_pred             CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEE----------CCCcEEEEECCCCceEEEee
Q 001366          799 VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD----------YDGVVKLWDACTGQTVSHYI  868 (1092)
Q Consensus       799 ~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs----------~DgtV~IWD~~tg~~i~~l~  868 (1092)
                      .|++|.+||..+..   ..    .....+..+  .++|+|+ +++|++++          .+++|.+||..+++.+.++.
T Consensus        29 ~d~~v~v~D~~t~~---~~----~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~   98 (361)
T 2oiz_A           29 TESRVHVYDYTNGK---FL----GMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS   98 (361)
T ss_dssp             GGCEEEEEETTTCC---EE----EEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred             ccCeEEEEECCCCe---EE----EEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence            47799999976521   11    111122333  8999998 77777776          36789999999999888776


Q ss_pred             cc------CccEEEEEEecCCCCEEEEEeC--CCcEEEEecCCCceeee-EecCCceEEEEEccCCCeEEEEEECCCeEE
Q 001366          869 EH------EKRAWSVDFSQVHPTKLASGSD--DCSVKLWNINEKNSLAT-IKNIANVCCVQFSAHSSHLLAFGSADYRTY  939 (1092)
Q Consensus       869 ~h------~~~V~sv~fsp~~~~~laSgs~--Dg~I~iWDl~~~~~l~~-l~~~~~V~sl~fsp~~~~~latgs~Dg~I~  939 (1092)
                      ..      ......++|+| ++++|++++.  +++|.+||+.+++.+.+ +..... ..+.+.|++...+++.+.||.+.
T Consensus        99 ~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~  176 (361)
T 2oiz_A           99 LPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLL  176 (361)
T ss_dssp             ECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEE
T ss_pred             cCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEE
Confidence            42      34567899999 8888888764  68999999999988887 665432 33667888766888899999999


Q ss_pred             EEEcCCCCcceE------EecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC------CC
Q 001366          940 CYDLRNARAPWC------VLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG------HT 1006 (1092)
Q Consensus       940 vwDlr~~~~~~~------~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~------h~ 1006 (1092)
                      +|++........      .+..+..++ .+.+. ++..++..+.++.|.+||+....      ......+.-      +.
T Consensus       177 ~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~------~~~~~~~~~~~~~~~~~  249 (361)
T 2oiz_A          177 TINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE------VKVDGPWSLLNDEDKAK  249 (361)
T ss_dssp             EEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS------CEEEEEEESCCHHHHHT
T ss_pred             EEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC------ceecccccccCcccccc
Confidence            999865322221      112222222 12222 45567777789999999986321      011111110      00


Q ss_pred             ----CCeEEEEEecCCCEEEEEec-----------CCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEe
Q 001366         1007 ----NEKNFVGLSTADGYIACGSE-----------SNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWR 1071 (1092)
Q Consensus      1007 ----~~V~~v~~spdg~~lasgs~-----------Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~s 1071 (1092)
                          .....++|+|+++.+..+..           .+.|.+||..+++.+.++..              +.  +.+|+|+
T Consensus       250 ~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--------------~~--p~~ia~s  313 (361)
T 2oiz_A          250 NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--------------RD--ALSMTID  313 (361)
T ss_dssp             TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--------------TT--CCEEEEE
T ss_pred             ccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--------------CC--eeEEEEC
Confidence                11123789999886665533           35899999999988887753              12  8999999


Q ss_pred             CCCCEEEEEecCCeEEEEEc
Q 001366         1072 RRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1072 pd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |||++|++++. +.|.|||+
T Consensus       314 pdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          314 QQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             TTTTEEEEECS-SCEEEEEC
T ss_pred             CCCCEEEEeCC-CeEEEEEC
Confidence            99999999987 99999985

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.55  E-value=4.8e-13  Score=150.74  Aligned_cols=279  Identities=10%  Similarity=0.071  Sum_probs=187.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECC
Q 001366          780 NVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDAC  859 (1092)
Q Consensus       780 ~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~  859 (1092)
                      ..|.++.|++++..++..+.++.++.|.-.          .......+...+.+++|+++ +.+++++..++.|.+||..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~   74 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE----------PWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPE   74 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE----------EEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTT
T ss_pred             cccceeeecCCccceeEEeecccCcccccc----------eeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeCC
Confidence            346778899988877777788899999321          11122345567799999997 7788888889999999998


Q ss_pred             CCceEEEeeccCccEEEEEEecCCCCEEEEEeCC----CcEEEEecCCCceeeeEe---cCCceEEEEEccCCCeEEEEE
Q 001366          860 TGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDD----CSVKLWNINEKNSLATIK---NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       860 tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~D----g~I~iWDl~~~~~l~~l~---~~~~V~sl~fsp~~~~~latg  932 (1092)
                      +++.......+...+.++++++ ++.+++++..+    +.|.+||..++.....+.   ....+.+++++|++. ++++.
T Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~  152 (333)
T 2dg1_A           75 TKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTD  152 (333)
T ss_dssp             TCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEE
T ss_pred             CCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEe
Confidence            8876655445677899999999 78888877766    689999998876543333   235689999999985 55554


Q ss_pred             EC------CCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEE-EEECCCeEEEEEcCCCCCCCC-CCCceeEEEc
Q 001366          933 SA------DYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLV-TASTDNKLKLWDLKRTSHTGP-STNACSLTFS 1003 (1092)
Q Consensus       933 s~------Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~-Sgs~Dg~I~vWDl~~~~~~~~-~~~~~~~~l~ 1003 (1092)
                      ..      .+.|+.||..+.+.  ..+..+...+..++|+ +++.|+ +.+.++.|.+||+........ ........+.
T Consensus       153 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  230 (333)
T 2dg1_A          153 FRGYSTNPLGGVYYVSPDFRTV--TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT  230 (333)
T ss_dssp             CCCBTTBCCEEEEEECTTSCCE--EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred             ccccccCCCceEEEEeCCCCEE--EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence            43      35677777654332  2222333457889998 445554 445678999999963110000 0000011122


Q ss_pred             CCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecC
Q 001366         1004 GHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSS 1083 (1092)
Q Consensus      1004 ~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~D 1083 (1092)
                      ++ ..+..++++++|.++++...++.|.+|+. .++.+..+...        ....+|...+.+++|+|++..|+.++.+
T Consensus       231 ~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~--------~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          231 GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP--------GRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             SS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT--------TGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC--------CCccccccCcceEEECCCCCEEEEEeCc
Confidence            22 45778999999998888888899999997 45555554321        0011233468899999998777665555

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.55  E-value=6.8e-13  Score=150.15  Aligned_cols=253  Identities=8%  Similarity=-0.019  Sum_probs=169.8

Q ss_pred             CEEEEEEcCCCCEEEEEe---------CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC-
Q 001366          781 VICSISFDRDEDHFAAAG---------VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD-  850 (1092)
Q Consensus       781 ~V~sl~fspdg~~latgg---------~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D-  850 (1092)
                      .+...+|  ||+++|...         .++.|.+|++....        ... .   ..+.+++|+|+ ++.|+.++.+ 
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~--------~~~-l---~~~~~~~~SpD-g~~la~~~~~~   80 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA--------RRF-I---ENATMPRISPD-GKKIAFMRANE   80 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC--------EEE-E---ESCEEEEECTT-SSEEEEEEEET
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc--------eEE-c---ccCCCeEECCC-CCEEEEEEecc
Confidence            4556677  788777542         25678899886521        011 1   56789999998 7888777654 


Q ss_pred             --C--cEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCC---------------------------CcEEEE
Q 001366          851 --G--VVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDD---------------------------CSVKLW  899 (1092)
Q Consensus       851 --g--tV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~D---------------------------g~I~iW  899 (1092)
                        +  .|.+||+.+++...... +.. +.++.|+| +++.|+.++.+                           ..|.+|
T Consensus        81 ~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  157 (347)
T 2gop_A           81 EKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIF  157 (347)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEE
T ss_pred             CCCcceEEEEECCCCceEEEEc-CCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEE
Confidence              3  48888988877655444 334 99999999 88888877642                           578999


Q ss_pred             ecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCC---------eEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCC
Q 001366          900 NINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADY---------RTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSG  969 (1092)
Q Consensus       900 Dl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg---------~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~  969 (1092)
                      |+.+++.+..+... .+..++|+|+|  +++++..+.         .|+++|  +++  ...+..+ ..+..+  + +++
T Consensus       158 d~~~~~~~~~l~~~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~--~~~l~~~-~~~~~~--spdg~  227 (347)
T 2gop_A          158 DTESEEVIEEFEKP-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK--EEKMFEK-VSFYAV--DSDGE  227 (347)
T ss_dssp             ETTTTEEEEEEEEE-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE--EEEEEEE-ESEEEE--EECSS
T ss_pred             ECCCCeEEeeecCC-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc--eEEeccC-cceeeE--CCCCC
Confidence            99988764444444 78899999998  666665432         455555  332  2333334 455555  5 677


Q ss_pred             EEEEEECC--------CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE-EEEecCCCEEEEEecCCcEEEEeCCCCCc
Q 001366          970 TLVTASTD--------NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF-VGLSTADGYIACGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       970 ~L~Sgs~D--------g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~-v~~spdg~~lasgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                      .|+.++.+        ..|.+|| .         +.......+|...+.. +.|+ ++ ++++++.++.++|| +..++.
T Consensus       228 ~l~~~~~~~~~~~~~~~~l~~~d-~---------~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~  294 (347)
T 2gop_A          228 RILLYGKPEKKYMSEHNKLYIYD-G---------KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI  294 (347)
T ss_dssp             CEEEEECCSSSCCCSSCEEEEEC-S---------SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred             EEEEEEccccCCccccceEEEEC-C---------CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence            78777654        3677787 2         1222223455667776 8999 88 89999999999999 774433


Q ss_pred             eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeE-EEEEc
Q 001366         1041 ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCI-KVLQM 1091 (1092)
Q Consensus      1041 i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V-~vW~l 1091 (1092)
                      ....               .+...|.+++|+|  .++++++.++.. .||.+
T Consensus       295 ~~~~---------------~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          295 KPIA---------------KGRHWIMGFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             EEEE---------------CSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             EEEe---------------cCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence            2211               1245789999999  788888877765 77754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.53  E-value=4e-11  Score=131.85  Aligned_cols=278  Identities=6%  Similarity=0.005  Sum_probs=190.2

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      +..+...+.+++++++|.++++...++.|.+||... .   ..   ..........+.++++.++ +.++++...++.|.
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~---~~---~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~   81 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLDG-K---IT---EYPLPTPDAKVMCLTISSD-GEVWFTENAANKIG   81 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTC-C---EE---EEECSSTTCCEEEEEECTT-SCEEEEETTTTEEE
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCC-C---eE---EecCCcccCceeeEEECCC-CCEEEeCCCCCeEE
Confidence            445667899999999999888877688999998652 1   10   0011123467899999987 77777776688999


Q ss_pred             EEECCCCceEEEee--ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe--cCCceEEEEEccCCCeEEE
Q 001366          855 LWDACTGQTVSHYI--EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK--NIANVCCVQFSAHSSHLLA  930 (1092)
Q Consensus       855 IWD~~tg~~i~~l~--~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~--~~~~V~sl~fsp~~~~~la  930 (1092)
                      .||.. ++. ..+.  .....+.++++.+ ++.++++...++.|.+||. +++......  ....+.++++++++. +++
T Consensus        82 ~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v  156 (299)
T 2z2n_A           82 RITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWF  156 (299)
T ss_dssp             EECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEE
T ss_pred             EECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEE
Confidence            99976 442 3332  2455789999998 7888888777889999998 554432221  235689999999984 666


Q ss_pred             EEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC-CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCe
Q 001366          931 FGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD-SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009 (1092)
Q Consensus       931 tgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~-~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V 1009 (1092)
                      +...++.|..||. +++........+...+..+++.+ +..+++...++.|.+||. +..       ........+...+
T Consensus       157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-------~~~~~~~~~~~~~  227 (299)
T 2z2n_A          157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-------ITEFKIPTPNARP  227 (299)
T ss_dssp             EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-------EEEEECSSTTCCE
T ss_pred             EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-------EEEEECCCCCCCc
Confidence            6666789999998 54432222334456788999984 454555556789999998 321       1112233455678


Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEE
Q 001366         1010 NFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVL 1089 (1092)
Q Consensus      1010 ~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW 1089 (1092)
                      ..++++++|.++++...++.|.+|+. .+. +..+..            ..+...+.++++ +++.++++.+. +.|..+
T Consensus       228 ~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~------------~~~~~~~~~i~~-~~g~l~v~~~~-~~l~~~  291 (299)
T 2z2n_A          228 HAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPI------------QIKSAEPHGICF-DGETIWFAMEC-DKIGKL  291 (299)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEEC------------SSSSCCEEEEEE-CSSCEEEEETT-TEEEEE
T ss_pred             eeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeC------------CCCCCccceEEe-cCCCEEEEecC-CcEEEE
Confidence            99999999987777767889999997 332 332221            123456899999 99998887664 455444


Q ss_pred             E
Q 001366         1090 Q 1090 (1092)
Q Consensus      1090 ~ 1090 (1092)
                      +
T Consensus       292 ~  292 (299)
T 2z2n_A          292 T  292 (299)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.52  E-value=3.5e-11  Score=146.31  Aligned_cols=321  Identities=12%  Similarity=0.070  Sum_probs=213.7

Q ss_pred             eEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCC
Q 001366          750 AFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRS  829 (1092)
Q Consensus       750 ~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~  829 (1092)
                      ...++++.+++....++...+..+      ..+..+.|+|||+++.+++.|+.|.+||+......      .........
T Consensus       173 ~~~~~~V~viD~~t~~v~~~i~~g------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~------~v~~i~~G~  240 (567)
T 1qks_A          173 LRDAGQIALIDGSTYEIKTVLDTG------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT------TVAEIKIGS  240 (567)
T ss_dssp             ETTTTEEEEEETTTCCEEEEEECS------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC------EEEEEECCS
T ss_pred             eCCCCeEEEEECCCCeEEEEEeCC------CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc------EeEEEecCC
Confidence            346788999998888777766532      24568999999999999999999999998411011      111122233


Q ss_pred             CeEEEEEe----cCCCCEEEEE-ECCCcEEEEECCCCceEEEeec----------cCc-cEEEEEEecCCCCEEEEEeCC
Q 001366          830 KLSCVCWN----NYIKNYLASA-DYDGVVKLWDACTGQTVSHYIE----------HEK-RAWSVDFSQVHPTKLASGSDD  893 (1092)
Q Consensus       830 ~V~~v~~s----p~~~~~LaSg-s~DgtV~IWD~~tg~~i~~l~~----------h~~-~V~sv~fsp~~~~~laSgs~D  893 (1092)
                      ....++|+    |+ +++++++ ..+++|.|+|..+.+.+..+..          |.. .+..+.+++.++..+++...+
T Consensus       241 ~P~~ia~s~~~~pD-Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~  319 (567)
T 1qks_A          241 EARSIETSKMEGWE-DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  319 (567)
T ss_dssp             EEEEEEECCSTTCT-TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCceeEEccccCCC-CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence            45789999    57 6665555 4569999999999988877652          222 677888888556677777788


Q ss_pred             CcEEEEecCCCcee--eeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEec----CCCCCeEEEEEcC
Q 001366          894 CSVKLWNINEKNSL--ATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA----GHEKAVSYVKFLD  967 (1092)
Q Consensus       894 g~I~iWDl~~~~~l--~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~----~H~~~V~~v~fs~  967 (1092)
                      |.|.++|....+.+  ..+........+.|+|++.+++++...++.|.++|+.+.+.......    .|.+.-..+ +++
T Consensus       320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p  398 (567)
T 1qks_A          320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHP  398 (567)
T ss_dssp             TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EET
T ss_pred             CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECC
Confidence            99999999876433  33445556778999999986667777889999999998764222222    243222222 344


Q ss_pred             -CCEEE-EEE-CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEec-------CCcEEEEeCCC
Q 001366          968 -SGTLV-TAS-TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE-------SNEVYAYHRSL 1037 (1092)
Q Consensus       968 -~~~L~-Sgs-~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-------Dg~I~Iwd~~~ 1037 (1092)
                       ++.++ ++. .+++|.++|....... ....+.+.++......-..+.++|+++++.....       .++|.|||+.+
T Consensus       399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~-~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~  477 (567)
T 1qks_A          399 TFGPVWATSHMGDDSVALIGTDPEGHP-DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA  477 (567)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTTCT-TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred             CCCcEEEeCCCCCCeEEEecCCCCCCc-cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence             35554 443 4689999999852211 1124566777655444456889999998877652       46999999876


Q ss_pred             C-----Cc-eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec-----CCeEEEEEc
Q 001366         1038 P-----MP-ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS-----SGCIKVLQM 1091 (1092)
Q Consensus      1038 ~-----~~-i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~-----DG~V~vW~l 1091 (1092)
                      .     .. +..+..+.+..      .......+..+.|+|+|..|..+..     ++.|.|+|.
T Consensus       478 ~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~  536 (567)
T 1qks_A          478 MTGDGSDPEFKTLPIAEWAG------ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  536 (567)
T ss_dssp             CCCSSSCCCEEEECHHHHHT------CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             ccccccCCCcEEeccccccc------cCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence            5     21 12221111000      1122457899999999998877654     688988873

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.49  E-value=1.9e-12  Score=148.68  Aligned_cols=273  Identities=11%  Similarity=0.025  Sum_probs=169.6

Q ss_pred             ccCCCCcEEe--Ec-CCe--EEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 001366          741 IQNPTDRLGA--FF-DGL--CKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDS  815 (1092)
Q Consensus       741 ~~~~~~~l~~--~~-D~~--~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~  815 (1092)
                      .++|++...+  .. ++.  +.+|+....+....     ..++...+.++.|+|||+.|+.++.++.|++||+.+..   
T Consensus        42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-----t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~---  113 (388)
T 3pe7_A           42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-----TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE---  113 (388)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-----CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC---
T ss_pred             cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-----eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc---
Confidence            3677775332  23 554  55566555444322     23455455567899999999999999999999987621   


Q ss_pred             cccccceeeecCCCCeEEEEE--ecCCCCEEEEE----------------------ECCCcEEEEECCCCceEEEeeccC
Q 001366          816 VDVYYPAVEMSNRSKLSCVCW--NNYIKNYLASA----------------------DYDGVVKLWDACTGQTVSHYIEHE  871 (1092)
Q Consensus       816 ~~~~~~~~~~~h~~~V~~v~~--sp~~~~~LaSg----------------------s~DgtV~IWD~~tg~~i~~l~~h~  871 (1092)
                          .......+...+....|  +++ +.+++..                      +.+..|.+||+.+++.. .+..+.
T Consensus       114 ----~~~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~  187 (388)
T 3pe7_A          114 ----ENVVYQVPAEWVGYGTWVANSD-CTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQEN  187 (388)
T ss_dssp             ----EEEEEECCTTEEEEEEEEECTT-SSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEES
T ss_pred             ----ceeeeechhhcccccceeECCC-CCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCC
Confidence                11122233444444444  676 6777642                      24578999999988654 444567


Q ss_pred             ccEEEEEEecCCCCEEEEEeCC------CcEEEEecCCCceeeeEecC--CceEEEEEccCCCeEEEEEECCC----eEE
Q 001366          872 KRAWSVDFSQVHPTKLASGSDD------CSVKLWNINEKNSLATIKNI--ANVCCVQFSAHSSHLLAFGSADY----RTY  939 (1092)
Q Consensus       872 ~~V~sv~fsp~~~~~laSgs~D------g~I~iWDl~~~~~l~~l~~~--~~V~sl~fsp~~~~~latgs~Dg----~I~  939 (1092)
                      ..+..+.|+|.++..|+.++.+      ..|.+||+..+.......+.  ..+..++|+|+|..+++++..++    .|+
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  267 (388)
T 3pe7_A          188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIY  267 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEE
T ss_pred             ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEE
Confidence            7789999999556677766653      37888887765443333333  35788999999975544444332    399


Q ss_pred             EEEcCCCCc-ceEEecCCCCC---eEEEEEc-CCCEEEEE---------ECCCeEEEEEcCCCCCCCCCCCceeEEEcCC
Q 001366          940 CYDLRNARA-PWCVLAGHEKA---VSYVKFL-DSGTLVTA---------STDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005 (1092)
Q Consensus       940 vwDlr~~~~-~~~~l~~H~~~---V~~v~fs-~~~~L~Sg---------s~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h 1005 (1092)
                      +||+.+++. .+..+.++...   ...+.|+ ++..|+..         ..+..|.+||+.+.         ....+..|
T Consensus       268 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~l~~~  338 (388)
T 3pe7_A          268 SADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG---------TQHRVARH  338 (388)
T ss_dssp             EECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT---------EEEEEEEC
T ss_pred             EEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC---------ceEEeccc
Confidence            999988763 22233331100   1112566 55555533         45678999999732         23445555


Q ss_pred             CC-----------CeEEEEEecCCCEEEEEe-cCCcEEEEeCC
Q 001366         1006 TN-----------EKNFVGLSTADGYIACGS-ESNEVYAYHRS 1036 (1092)
Q Consensus      1006 ~~-----------~V~~v~~spdg~~lasgs-~Dg~I~Iwd~~ 1036 (1092)
                      ..           .+..++|+|||+.|+.++ .++...||.+.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            54           577889999999888766 46777777544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.49  E-value=2.7e-11  Score=136.34  Aligned_cols=234  Identities=9%  Similarity=-0.013  Sum_probs=161.1

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC----
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD----  850 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D----  850 (1092)
                      +..+...+.+++|+++|++++++..++.|.+||.....       .......+...+.+++|+++ +.+++++..+    
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~  111 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-------IKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKST  111 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-------EEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSC
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-------EEEEeeCCCCCcceEEECCC-CcEEEEeCCCCCCC
Confidence            34566678999999999988888889999999976421       11111234578999999998 7777777666    


Q ss_pred             CcEEEEECCCCceEEEee--ccCccEEEEEEecCCCCEEEEEeC------CCcEEEEecCCCceeeeEecCCceEEEEEc
Q 001366          851 GVVKLWDACTGQTVSHYI--EHEKRAWSVDFSQVHPTKLASGSD------DCSVKLWNINEKNSLATIKNIANVCCVQFS  922 (1092)
Q Consensus       851 gtV~IWD~~tg~~i~~l~--~h~~~V~sv~fsp~~~~~laSgs~------Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fs  922 (1092)
                      +.|.+||..++.....+.  .+...+.++.++| ++.++++...      .+.|..||..+++..........+..++|+
T Consensus       112 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  190 (333)
T 2dg1_A          112 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALS  190 (333)
T ss_dssp             CEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC
T ss_pred             ceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEEC
Confidence            689999998876553433  2445789999999 7887777654      245666666555444333344568899999


Q ss_pred             cCCCeEEEEEECCCeEEEEEcCCCCcceE--------EecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCC
Q 001366          923 AHSSHLLAFGSADYRTYCYDLRNARAPWC--------VLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGP  993 (1092)
Q Consensus       923 p~~~~~latgs~Dg~I~vwDlr~~~~~~~--------~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~  993 (1092)
                      |++..++++.+.++.|++||+.+....+.        .+.++ ..+..+++. ++..+++...++.|.+||..       
T Consensus       191 ~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-------  262 (333)
T 2dg1_A          191 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-------  262 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-------
T ss_pred             CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-------
Confidence            99865566666789999999964211111        11222 467889998 55556666678999999974       


Q ss_pred             CCCceeEEEcCCC------CCeEEEEEecCCCEEEEEecC
Q 001366          994 STNACSLTFSGHT------NEKNFVGLSTADGYIACGSES 1027 (1092)
Q Consensus       994 ~~~~~~~~l~~h~------~~V~~v~~spdg~~lasgs~D 1027 (1092)
                        +..+..+..+.      ..+.+++|+|+++.|+.++.+
T Consensus       263 --g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          263 --GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             --SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             --CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence              23344454333      268899999998777655554

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.49  E-value=5.7e-15  Score=164.10  Aligned_cols=66  Identities=12%  Similarity=-0.025  Sum_probs=58.2

Q ss_pred             cccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          305 RQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       305 ~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                      .+|||++|++|.+ +..       .+...++.||+.||.|||++||+||||||+|||++ ++.+||+|||+++..
T Consensus       177 lvmE~~~g~~L~~-l~~-------~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~DFG~a~~~  242 (282)
T 1zar_A          177 VLMELIDAKELYR-VRV-------ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVEV  242 (282)
T ss_dssp             EEEECCCCEEGGG-CCC-------SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTCEET
T ss_pred             EEEEecCCCcHHH-cch-------hhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEECCCCeEC
Confidence            3899999999998 421       23567999999999999999999999999999999 999999999988653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.47  E-value=5.4e-12  Score=158.25  Aligned_cols=243  Identities=15%  Similarity=0.154  Sum_probs=167.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          778 SANVICSISFDRDEDHFAAAGVSK-----KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       778 h~~~V~sl~fspdg~~latgg~D~-----~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      |...+.+++|+|||++||.++.++     .|++||+.+...      .. .... ...+.+++|+|| ++.|+.++.|+.
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~------~~-~~~~-~~~~~~~~wspD-g~~l~~~~~~~~  193 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE------LP-DVLE-RVKFSCMAWTHD-GKGMFYNAYPQQ  193 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE------EE-EEEE-EECSCCEEECTT-SSEEEEEECCCC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC------Cc-cccc-CcccceEEEEeC-CCEEEEEEECCc
Confidence            444688899999999999876544     899999876211      11 1111 123678999998 888888888876


Q ss_pred             ----------------EEEEECCCCce--EEEee--ccCccEEEEEEecCCCCEEEEEeC-----CCcEEEEecCC----
Q 001366          853 ----------------VKLWDACTGQT--VSHYI--EHEKRAWSVDFSQVHPTKLASGSD-----DCSVKLWNINE----  903 (1092)
Q Consensus       853 ----------------V~IWD~~tg~~--i~~l~--~h~~~V~sv~fsp~~~~~laSgs~-----Dg~I~iWDl~~----  903 (1092)
                                      |++|++.+++.  ...+.  .|...+.++.|+| +++.|+.++.     +..|.+||+.+    
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~  272 (710)
T 2xdw_A          194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (710)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccc
Confidence                            99999988762  23333  3556678999999 8888877764     67899999987    


Q ss_pred             --Cc-eeeeEe-cCCceEEEEEccCCCeEEEEEECC---CeEEEEEcCCCCc-ceEEecCCCC--CeEEEEEc-CCCEEE
Q 001366          904 --KN-SLATIK-NIANVCCVQFSAHSSHLLAFGSAD---YRTYCYDLRNARA-PWCVLAGHEK--AVSYVKFL-DSGTLV  972 (1092)
Q Consensus       904 --~~-~l~~l~-~~~~V~sl~fsp~~~~~latgs~D---g~I~vwDlr~~~~-~~~~l~~H~~--~V~~v~fs-~~~~L~  972 (1092)
                        +. ....+. +...+.. .|+|+|..+++.+..+   +.|.+||+.++.. .+..+..|..  .+..+.|+ .+..++
T Consensus       273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred             cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence              43 344454 3334444 5888887555555433   3799999987642 2344445544  68889998 445667


Q ss_pred             EEECCCe--EEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEE-e---cCCcEEEEeCCCCC
Q 001366          973 TASTDNK--LKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACG-S---ESNEVYAYHRSLPM 1039 (1092)
Q Consensus       973 Sgs~Dg~--I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg-s---~Dg~I~Iwd~~~~~ 1039 (1092)
                      ++..|+.  |.+||+.        .+.....+..+...+..++++|++..|+.. +   ..++|++||+.+++
T Consensus       352 ~~~~~g~~~l~~~~~~--------~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLA--------TGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEETTEEEEEEEETT--------TCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEECC--------CCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            7888885  5556664        234556777777778889999998765533 2   34789999998776

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.47  E-value=1.6e-11  Score=154.06  Aligned_cols=241  Identities=8%  Similarity=0.044  Sum_probs=165.7

Q ss_pred             CCCCeEEEEEecCCCCEEEEEECCC-----cEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCc------
Q 001366          827 NRSKLSCVCWNNYIKNYLASADYDG-----VVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCS------  895 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs~Dg-----tV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~------  895 (1092)
                      +...+..++|+|+ +++||.++.++     +|++||+.+++.+.....+ ..+.+++|+| |++.|+.++.|+.      
T Consensus       123 ~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          123 GTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             SCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCCSS
T ss_pred             CCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEe-CCCEEEEEEECCccccccc
Confidence            3346889999998 77777665543     8999999999876543322 2367899999 8899998888776      


Q ss_pred             ----------EEEEecCCCcee--eeEe---cCCceEEEEEccCCCeEEEEEEC-----CCeEEEEEcCC------CCcc
Q 001366          896 ----------VKLWNINEKNSL--ATIK---NIANVCCVQFSAHSSHLLAFGSA-----DYRTYCYDLRN------ARAP  949 (1092)
Q Consensus       896 ----------I~iWDl~~~~~l--~~l~---~~~~V~sl~fsp~~~~~latgs~-----Dg~I~vwDlr~------~~~~  949 (1092)
                                |++|++.++...  ..+.   +...+..+.|+|+|. +|+.++.     +..|++||+.+      +...
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence                      999999887632  2223   234578999999997 5554443     57899999986      4323


Q ss_pred             eEEecCCCCCeEEEEEcCCCEEEEEECC----CeEEEEEcCCCCCCCCCCCceeEEEcCCCC--CeEEEEEecCCCEEEE
Q 001366          950 WCVLAGHEKAVSYVKFLDSGTLVTASTD----NKLKLWDLKRTSHTGPSTNACSLTFSGHTN--EKNFVGLSTADGYIAC 1023 (1092)
Q Consensus       950 ~~~l~~H~~~V~~v~fs~~~~L~Sgs~D----g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~--~V~~v~~spdg~~las 1023 (1092)
                      ...+..+...+......+++.|+..+.+    +.|.+||+.+...      .....+..|..  .+..++|++++.++++
T Consensus       279 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~lv~~  352 (710)
T 2xdw_A          279 WVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE------SKWKVLVPEHEKDVLEWVACVRSNFLVLC  352 (710)
T ss_dssp             CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG------GGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred             eEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc------ccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence            4566667666666433367776655543    3699999874310      12344555544  5778899987778888


Q ss_pred             EecCCc--EEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEE-e---cCCeEEEEEc
Q 001366         1024 GSESNE--VYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAA-N---SSGCIKVLQM 1091 (1092)
Q Consensus      1024 gs~Dg~--I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasg-s---~DG~V~vW~l 1091 (1092)
                      ...|+.  |++|+...++.+..+.              .+...|.+++++|++..|+.. +   ..+.|.+|++
T Consensus       353 ~~~~g~~~l~~~~~~~g~~~~~l~--------------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          353 YLHDVKNTLQLHDLATGALLKIFP--------------LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEEC--------------CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             EEECCEEEEEEEECCCCCEEEecC--------------CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            888885  5666765666554443              234568899999998766633 2   2378888885

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.46  E-value=1.4e-12  Score=163.24  Aligned_cols=246  Identities=9%  Similarity=-0.014  Sum_probs=168.9

Q ss_pred             CCCCCEEEEEEcCCCCEEE-----EEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC
Q 001366          777 NSANVICSISFDRDEDHFA-----AAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG  851 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~la-----tgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg  851 (1092)
                      +|...+.+++|+|||++||     .|+.+.+|++||+.+.....     .. .. .......++|+|+ ++.|+.++.|.
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----~~-~~-~~~~~~~~~wspD-g~~l~~~~~d~  189 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----VD-VI-EGGKYATPKWTPD-SKGFYYEWLPT  189 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----SC-CB-SCCTTCCCEECTT-SSEEEEEECCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----Cc-cc-CcccccceEEecC-CCEEEEEEecC
Confidence            4566789999999999999     44445789999997632110     00 00 1112267899998 88899998887


Q ss_pred             c-------------EEEEECCCCc----eEEEeeccCccEEEEEEecCCCCEEEEEeCCC----cEEEEecCCCceeeeE
Q 001366          852 V-------------VKLWDACTGQ----TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC----SVKLWNINEKNSLATI  910 (1092)
Q Consensus       852 t-------------V~IWD~~tg~----~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg----~I~iWDl~~~~~l~~l  910 (1092)
                      .             |++|++.+++    .+.....|...+.++.|+| +++.|+.++.++    .|.+||..++......
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~  268 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLV  268 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEE
T ss_pred             CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEee
Confidence            7             9999999876    3333334556789999999 888887777666    6777776655544444


Q ss_pred             ecCCceEEEEEccCCCeEEEEEE---CCCeEEEEEcCCCCc-ceEEe-cCC-CCCeEEEEEcCCCEEEEEECCCeEEEEE
Q 001366          911 KNIANVCCVQFSAHSSHLLAFGS---ADYRTYCYDLRNARA-PWCVL-AGH-EKAVSYVKFLDSGTLVTASTDNKLKLWD  984 (1092)
Q Consensus       911 ~~~~~V~sl~fsp~~~~~latgs---~Dg~I~vwDlr~~~~-~~~~l-~~H-~~~V~~v~fs~~~~L~Sgs~Dg~I~vWD  984 (1092)
                      .+...+....| +++. +++.+.   .++.|.+||+.++.. .+..+ ..+ ...+..++|+++..+++...|+..+||.
T Consensus       269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence            45555666666 6775 555554   358999999987642 12333 333 4568888888777788899999999887


Q ss_pred             cCCCCCCCCCCCceeEEEcCC-CCCeEEEEEecCCCEEEEEe----cCCcEEEEeCCCCCc
Q 001366          985 LKRTSHTGPSTNACSLTFSGH-TNEKNFVGLSTADGYIACGS----ESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       985 l~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~lasgs----~Dg~I~Iwd~~~~~~ 1040 (1092)
                      +..       .+.....+..+ ...+..++++|++..|+...    ..++|++||+.+++.
T Consensus       347 ~~~-------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          347 ATL-------KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EET-------TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EeC-------CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            752       12344555544 55677788999988666322    347899999987763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.46  E-value=1e-11  Score=140.41  Aligned_cols=223  Identities=9%  Similarity=0.084  Sum_probs=148.5

Q ss_pred             CCEEEEEEcCCCCEEEEEeCC---Cc--EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC----
Q 001366          780 NVICSISFDRDEDHFAAAGVS---KK--IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD----  850 (1092)
Q Consensus       780 ~~V~sl~fspdg~~latgg~D---~~--I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D----  850 (1092)
                      ..+.+++|+|||++||.++.+   +.  |.+|++....        ......+.. +.+++|+|+ ++.|+.++.+    
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~--------~~~l~~~~~-~~~~~wspd-g~~l~~~~~~~~~~  128 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS--------SKKILEAKN-IRSLEWNED-SRKLLIVGFKRRED  128 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE--------EEEEEEESE-EEEEEECTT-SSEEEEEEECCCC-
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc--------eEEEEcCCC-ccceeECCC-CCEEEEEEccCCCc
Confidence            357789999999999988754   34  6666665311        111111223 899999998 7777777642    


Q ss_pred             -----------------------CcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCC-------cEEEEe
Q 001366          851 -----------------------GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC-------SVKLWN  900 (1092)
Q Consensus       851 -----------------------gtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg-------~I~iWD  900 (1092)
                                             ..|.+||+.+++.+..+.. . .+..+.|+| ++ ++++++.+.       ...||.
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~  204 (347)
T 2gop_A          129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYI  204 (347)
T ss_dssp             --------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEE
T ss_pred             CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEE
Confidence                                   5799999998877555555 4 788999999 77 887776652       445555


Q ss_pred             cCCCceeeeEecCCceEEEEEccCCCeEEEEEECC--------CeEEEEEcCCCCcceEEecCCCCCeEE-EEEcCCCEE
Q 001366          901 INEKNSLATIKNIANVCCVQFSAHSSHLLAFGSAD--------YRTYCYDLRNARAPWCVLAGHEKAVSY-VKFLDSGTL  971 (1092)
Q Consensus       901 l~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~D--------g~I~vwDlr~~~~~~~~l~~H~~~V~~-v~fs~~~~L  971 (1092)
                      +.+++......+ ..+.++  +|+|. .|++++.+        ..|++||  +++ ......+|...+.. +.|+ ++.+
T Consensus       205 ~d~~~~~~l~~~-~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg~~  276 (347)
T 2gop_A          205 WEDGKEEKMFEK-VSFYAV--DSDGE-RILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GKVY  276 (347)
T ss_dssp             EETTEEEEEEEE-ESEEEE--EECSS-CEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TEEE
T ss_pred             eCCCceEEeccC-cceeeE--CCCCC-EEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-CcEE
Confidence            544443332333 444444  89997 45555433        4788888  332 23334556777886 8998 4488


Q ss_pred             EEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcE-EEEeCC
Q 001366          972 VTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEV-YAYHRS 1036 (1092)
Q Consensus       972 ~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I-~Iwd~~ 1036 (1092)
                      ++++.++.++|| +.+        +.. ..+..+...|.+++|+|  .++++++.++.. .||...
T Consensus       277 ~~~~~~~~~~l~-~~~--------g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          277 FTLFEEGSVNLY-IWD--------GEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEETTEEEEE-EES--------SSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EEEecCCcEEEE-EcC--------Cce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            899999999999 872        222 33444577889999999  677777766654 666654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.46  E-value=1.9e-11  Score=135.49  Aligned_cols=234  Identities=9%  Similarity=-0.018  Sum_probs=164.0

Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          778 SANVICSISFDRDED-HFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       778 h~~~V~sl~fspdg~-~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      +.....+++|+|+|+ +++++..++.|.+|+....         ......+...+.+++++++ +.++++...++.|.+|
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~l~~~~d-g~l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------LSPEMHPSHHQNGHCLNKQ-GHLIACSHGLRRLERQ   95 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---------EEEEESSCSSEEEEEECTT-CCEEEEETTTTEEEEE
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---------eEEEECCCCCcceeeECCC-CcEEEEecCCCeEEEE
Confidence            445677899999998 7888888999999998651         1122235677899999997 7787777677899999


Q ss_pred             ECCCCceEEEeecc----CccEEEEEEecCCCCEEEEEeC-----------------CCcEEEEecCCCceeeeEecCCc
Q 001366          857 DACTGQTVSHYIEH----EKRAWSVDFSQVHPTKLASGSD-----------------DCSVKLWNINEKNSLATIKNIAN  915 (1092)
Q Consensus       857 D~~tg~~i~~l~~h----~~~V~sv~fsp~~~~~laSgs~-----------------Dg~I~iWDl~~~~~l~~l~~~~~  915 (1092)
                      |..+++........    ...+.+++++| ++.++++.+.                 .+.|..+|.. ++..........
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~  173 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK  173 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC
Confidence            99888754433221    23467899999 8888887321                 2345555554 443333345566


Q ss_pred             eEEEEEccCCCeEEEEEECCCeEEEEEcC-CCCc--ceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCC
Q 001366          916 VCCVQFSAHSSHLLAFGSADYRTYCYDLR-NARA--PWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTG  992 (1092)
Q Consensus       916 V~sl~fsp~~~~~latgs~Dg~I~vwDlr-~~~~--~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~  992 (1092)
                      ...++|+|++. ++++.+.++.|++||+. ++..  ....+..+...+..+++.+.+.|+.+. ++.|.+||..      
T Consensus       174 ~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~------  245 (296)
T 3e5z_A          174 PNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD------  245 (296)
T ss_dssp             EEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT------
T ss_pred             CccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC------
Confidence            78999999997 45888888999999997 3321  012334455667789998555555555 8899999975      


Q ss_pred             CCCCceeEEEcCCCCCeEEEEE-ecCCCEEEEEecCCcEEEEeCC
Q 001366          993 PSTNACSLTFSGHTNEKNFVGL-STADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       993 ~~~~~~~~~l~~h~~~V~~v~~-spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                         +..+..+..+.. +++++| +|+++.|+.++.++ +..++..
T Consensus       246 ---g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~  285 (296)
T 3e5z_A          246 ---GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETN  285 (296)
T ss_dssp             ---SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred             ---CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence               345667777776 899999 58888888888764 4445544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.45  E-value=3.5e-12  Score=158.08  Aligned_cols=251  Identities=8%  Similarity=-0.056  Sum_probs=168.3

Q ss_pred             ecCCCCeEEEEEecCCCCEEEEE--ECCCcEEEEECCCCceEEEeeccCccEE---------EEEEe--cCCCCE-EEEE
Q 001366          825 MSNRSKLSCVCWNNYIKNYLASA--DYDGVVKLWDACTGQTVSHYIEHEKRAW---------SVDFS--QVHPTK-LASG  890 (1092)
Q Consensus       825 ~~h~~~V~~v~~sp~~~~~LaSg--s~DgtV~IWD~~tg~~i~~l~~h~~~V~---------sv~fs--p~~~~~-laSg  890 (1092)
                      .+|...|..++|+++ .-++++.  +.++...||....+.....+..|...+.         .+.|+  | +++. |+.+
T Consensus        20 ~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~~   97 (662)
T 3azo_A           20 ASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVFT   97 (662)
T ss_dssp             HHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEEE
T ss_pred             hhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeec-CCCeEEEEE
Confidence            457888999999986 5555665  5588999999655666677777776666         66676  8 7776 6655


Q ss_pred             eC-CCcEEEEecC--C-CceeeeEe------cCCceEEEEEccCCCeEEEEEECC----------CeEEEEEcCCCC---
Q 001366          891 SD-DCSVKLWNIN--E-KNSLATIK------NIANVCCVQFSAHSSHLLAFGSAD----------YRTYCYDLRNAR---  947 (1092)
Q Consensus       891 s~-Dg~I~iWDl~--~-~~~l~~l~------~~~~V~sl~fsp~~~~~latgs~D----------g~I~vwDlr~~~---  947 (1092)
                      +. +..|.+|++.  . +. ...+.      +...+.+++|+|+|. .|++++.+          ..|++||+.+..   
T Consensus        98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            44 5667777765  2 33 33333      245688999999996 67666666          589999998720   


Q ss_pred             -cceEEec-CCCCCeEEEEEc-CCCEEEEEECC--------CeEEEEEcCC-CCCCCCCCCceeEEEcCCCCCeEEEEEe
Q 001366          948 -APWCVLA-GHEKAVSYVKFL-DSGTLVTASTD--------NKLKLWDLKR-TSHTGPSTNACSLTFSGHTNEKNFVGLS 1015 (1092)
Q Consensus       948 -~~~~~l~-~H~~~V~~v~fs-~~~~L~Sgs~D--------g~I~vWDl~~-~~~~~~~~~~~~~~l~~h~~~V~~v~~s 1015 (1092)
                       .....+. .+...+..++|+ ++++|+.++.+        ..|.+||+.. +.     .........+|...+..++|+
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-----~~~~~~l~~~~~~~~~~~~~s  250 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-----FADTRTLLGGPEEAIAQAEWA  250 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-----EEEEEEEEEETTBCEEEEEEC
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-----ccccEEeCCCCCceEcceEEC
Confidence             1234555 566778889999 66788877755        3799999972 20     012333334567789999999


Q ss_pred             cCCCEEEEEecCC--cEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1016 TADGYIACGSESN--EVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1016 pdg~~lasgs~Dg--~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |||+++++++.++  .|++|+...++...... +... ..    ...-...+.+++|+|++.++++++. |.++||.+
T Consensus       251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~-~~----~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEE-FA----GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             TTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSB-SS----CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             CCCeEEEEECCCCCeEEEEEECCCCceeeccc-cccc-cc----CccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence            9999888888888  66666665554332211 0000 00    0000111467899999999999999 99999953

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.45  E-value=3e-11  Score=133.89  Aligned_cols=229  Identities=9%  Similarity=0.026  Sum_probs=166.7

Q ss_pred             cCCCCeEEEEEecCCCC-EEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 001366          826 SNRSKLSCVCWNNYIKN-YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK  904 (1092)
Q Consensus       826 ~h~~~V~~v~~sp~~~~-~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~  904 (1092)
                      .+.....+++|+|+ ++ +++++..++.|..||..++  ...+..+...+.++++++ ++.++++...++.|.+||..++
T Consensus        25 ~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           25 DGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             CCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTC
T ss_pred             cCCccccCCeEeCC-CCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCC
Confidence            34566789999998 55 8888889999999999877  667777778899999999 8888887777889999999888


Q ss_pred             ceeeeEec-----CCceEEEEEccCCCeEEEE----EE-------------CCCeEEEEEcCCCCcceEEecCCCCCeEE
Q 001366          905 NSLATIKN-----IANVCCVQFSAHSSHLLAF----GS-------------ADYRTYCYDLRNARAPWCVLAGHEKAVSY  962 (1092)
Q Consensus       905 ~~l~~l~~-----~~~V~sl~fsp~~~~~lat----gs-------------~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~  962 (1092)
                      +.......     ...++.++++|+|. ++++    |+             ..+.|+.+|.. ++  +..+..+...+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~g  176 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNG  176 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCcc
Confidence            75443321     23467899999995 6665    32             13467777655 22  3444566677899


Q ss_pred             EEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCce---eEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCC
Q 001366          963 VKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNAC---SLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLP 1038 (1092)
Q Consensus       963 v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~---~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~ 1038 (1092)
                      ++|+ +++.|++.+.++.|.+||+...       +..   ...+..+...+..++++++|.++++.  ++.|.+|+.. +
T Consensus       177 i~~s~dg~~lv~~~~~~~i~~~~~~~~-------g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g  246 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNATHRYCLNAR-------GETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G  246 (296)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEEECSS-------SCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred             EEECCCCCEEEEeCCCCeEEEEEECCC-------CcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence            9998 5666777777899999998621       111   22333345566789999999977766  7889999976 6


Q ss_pred             CceeeeeccccCCCCCccccCCCCCCEEEEEE-eCCCCEEEEEecCCeEE
Q 001366         1039 MPITSYKFGSIDPISGKETDDDNGLFVSSVCW-RRRSDMVVAANSSGCIK 1087 (1092)
Q Consensus      1039 ~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~-spd~~~Lasgs~DG~V~ 1087 (1092)
                      +.+..+..              +.. +.+++| .|++..|++++.+|.++
T Consensus       247 ~~~~~~~~--------------~~~-~~~~~f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          247 DELGRVLT--------------PQT-TSNLCFGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             CEEEEEEC--------------SSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred             CEEEEEEC--------------CCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence            65554431              233 889999 58999999888775443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.42  E-value=3.3e-11  Score=133.19  Aligned_cols=215  Identities=8%  Similarity=-0.013  Sum_probs=165.7

Q ss_pred             CCEEEEEECCCcEEEEECCCCceEEEeeccC-ccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecC--CceE
Q 001366          841 KNYLASADYDGVVKLWDACTGQTVSHYIEHE-KRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI--ANVC  917 (1092)
Q Consensus       841 ~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~-~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~--~~V~  917 (1092)
                      +++|++++.|+.|++||..+|+.+.++..+. ..+.++.+.| ++++++  +.++.|..||. +++.+..+...  ..+.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            6899999999999999999999999998776 4688999999 888888  45788999999 89999998854  4788


Q ss_pred             EEEEccCCCeEEEEEEC-CCeEEEEEcCCCCcceEEec------CCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCC
Q 001366          918 CVQFSAHSSHLLAFGSA-DYRTYCYDLRNARAPWCVLA------GHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTS  989 (1092)
Q Consensus       918 sl~fsp~~~~~latgs~-Dg~I~vwDlr~~~~~~~~l~------~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~  989 (1092)
                      ++.+.|+|. ++++.+. ++.|..+|. +++.. ..+.      ++......+++. +++++++.+.++.|.+||..   
T Consensus        81 ~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~l-~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~---  154 (276)
T 3no2_A           81 TARILPDGN-ALVAWCGHPSTILEVNM-KGEVL-SKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN---  154 (276)
T ss_dssp             EEEECTTSC-EEEEEESTTEEEEEECT-TSCEE-EEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT---
T ss_pred             ccEECCCCC-EEEEecCCCCEEEEEeC-CCCEE-EEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC---
Confidence            999999996 7777776 788888886 44432 2221      122234455565 77889999999999999976   


Q ss_pred             CCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEE
Q 001366          990 HTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVC 1069 (1092)
Q Consensus       990 ~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva 1069 (1092)
                            ++.+.++... ....++.+.++|.++++++.++.|..||..+++.+..+.-...   .     ...-..+.+++
T Consensus       155 ------G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~---~-----~~~l~~~~~~~  219 (276)
T 3no2_A          155 ------GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI---E-----GVQLFFVAQLF  219 (276)
T ss_dssp             ------SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS---B-----SCCCSEEEEEE
T ss_pred             ------CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC---C-----Cccccccccce
Confidence                  4456666654 3456788899999999999888999999999999988752110   0     11224578888


Q ss_pred             EeCCCCEEEEE
Q 001366         1070 WRRRSDMVVAA 1080 (1092)
Q Consensus      1070 ~spd~~~Lasg 1080 (1092)
                      ..++|.++++.
T Consensus       220 ~~~~G~i~v~~  230 (276)
T 3no2_A          220 PLQNGGLYICN  230 (276)
T ss_dssp             ECTTSCEEEEE
T ss_pred             EcCCCCEEEEe
Confidence            89999988877

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.40  E-value=7e-11  Score=133.74  Aligned_cols=261  Identities=9%  Similarity=-0.032  Sum_probs=174.6

Q ss_pred             CCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEE
Q 001366          800 SKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDF  879 (1092)
Q Consensus       800 D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~f  879 (1092)
                      +++|.+||..+...... ...............++++..  +.++++...+++|.+||..+++.+.++. .......+++
T Consensus        16 ~~~l~~~d~~t~~~~~~-i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~   91 (328)
T 3dsm_A           16 NATLSYYDPATCEVENE-VFYRANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHF   91 (328)
T ss_dssp             CBEEEEEETTTTEEECS-HHHHHHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEE
T ss_pred             CceEEEEECCCCEEhhh-hHhhhcCcccCccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEE
Confidence            78999999875211000 000000001123456777754  5666777778999999999999988885 3466889999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCC------ceEEEEEccCCCeEEEEEE-CCCeEEEEEcCCCCcceEE
Q 001366          880 SQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIA------NVCCVQFSAHSSHLLAFGS-ADYRTYCYDLRNARAPWCV  952 (1092)
Q Consensus       880 sp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~------~V~sl~fsp~~~~~latgs-~Dg~I~vwDlr~~~~~~~~  952 (1092)
                      ++ ++.++++...++.|.+||..+++....+....      ....+++ . +..++++.. .++.|.+||+.+.+. ...
T Consensus        92 ~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~-~~~  167 (328)
T 3dsm_A           92 LS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKV-VDE  167 (328)
T ss_dssp             EE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEE-EEE
T ss_pred             eC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeE-EEE
Confidence            88 66555555589999999999998888887554      6677787 3 444555544 489999999998753 333


Q ss_pred             ecCCCCCeEEEEEcCCCEE-EEEECC----------CeEEEEEcCCCCCCCCCCCceeEEEcCC-CCCeEEEEEecCCCE
Q 001366          953 LAGHEKAVSYVKFLDSGTL-VTASTD----------NKLKLWDLKRTSHTGPSTNACSLTFSGH-TNEKNFVGLSTADGY 1020 (1092)
Q Consensus       953 l~~H~~~V~~v~fs~~~~L-~Sgs~D----------g~I~vWDl~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~ 1020 (1092)
                      +.. ......+.+++++.+ +++..+          +.|.+||..+        ......+... ....+.++|+|++++
T Consensus       168 i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t--------~~v~~~~~~~~g~~p~~la~~~d~~~  238 (328)
T 3dsm_A          168 LTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET--------FTVEKQFKFKLGDWPSEVQLNGTRDT  238 (328)
T ss_dssp             EEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT--------TEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             EEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC--------CeEEEEEecCCCCCceeEEEecCCCE
Confidence            332 233567888854444 444443          7899999873        3444444322 236789999999998


Q ss_pred             EEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC-CCCEEEEE----ecCCeEEEEEc
Q 001366         1021 IACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR-RSDMVVAA----NSSGCIKVLQM 1091 (1092)
Q Consensus      1021 lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp-d~~~Lasg----s~DG~V~vW~l 1091 (1092)
                      |.++..  .|++||..+++.... .+           ...+.....+++++| ++.++++.    ..+|.|.+|+.
T Consensus       239 lyv~~~--~v~~~d~~t~~~~~~-~~-----------~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          239 LYWINN--DIWRMPVEADRVPVR-PF-----------LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             EEEESS--SEEEEETTCSSCCSS-CS-----------BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             EEEEcc--EEEEEECCCCceeee-ee-----------ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            877654  899999887764321 10           111245689999999 56666666    57899999974

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.40  E-value=2.6e-11  Score=131.84  Aligned_cols=238  Identities=7%  Similarity=-0.019  Sum_probs=163.7

Q ss_pred             CEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECC
Q 001366          781 VICSISFDRDEDHFA-AAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDAC  859 (1092)
Q Consensus       781 ~V~sl~fspdg~~la-tgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~  859 (1092)
                      ...+++++++|++++ +.+.++.|.+|+......       ......+...+.++++.++ +.++++.. ++.|.+||..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-------TVLPFNGLYQPQGLAVDGA-GTVYVTDF-NNRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC------------EECCCCSCCSCCCEEECTT-CCEEEEET-TTEEEEECTT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc-------ceEeeCCcCCcceeEECCC-CCEEEEcC-CCEEEEEeCC
Confidence            567899999999877 546788999998654110       0011123356788999987 66666555 8999999987


Q ss_pred             CCceEEEee-ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCe
Q 001366          860 TGQTVSHYI-EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYR  937 (1092)
Q Consensus       860 tg~~i~~l~-~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~  937 (1092)
                      ..... .+. .....+.++++.+ ++.++++...++.|.+||..+........ ....+.++++++++. ++++...++.
T Consensus        96 ~~~~~-~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~  172 (270)
T 1rwi_B           96 SNNQT-VLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNR  172 (270)
T ss_dssp             CSCCE-ECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTE
T ss_pred             CceEe-eeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEECCCCE
Confidence            65433 332 2335688999999 78888887788999999876554332222 234678899999985 7777777889


Q ss_pred             EEEEEcCCCCcceEEecCCCCCeEEEEEcC-CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEec
Q 001366          938 TYCYDLRNARAPWCVLAGHEKAVSYVKFLD-SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLST 1016 (1092)
Q Consensus       938 I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~-~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp 1016 (1092)
                      |.+||...... ......+...+..|++.+ +..+++...++.|.+||....        ........+...+.++++++
T Consensus       173 i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~--------~~~~~~~~~~~~p~~i~~~~  243 (270)
T 1rwi_B          173 VVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST--------TSTVLPFTGLNTPLAVAVDS  243 (270)
T ss_dssp             EEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS--------CCEECCCCSCSCEEEEEECT
T ss_pred             EEEEecCCCce-EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC--------cceeeccCCCCCceeEEECC
Confidence            99999876542 122223336788999984 445555556889999998632        11111123345688999999


Q ss_pred             CCCEEEEEecCCcEEEEeCCCCC
Q 001366         1017 ADGYIACGSESNEVYAYHRSLPM 1039 (1092)
Q Consensus      1017 dg~~lasgs~Dg~I~Iwd~~~~~ 1039 (1092)
                      +|.++++.+.++.|++|+....+
T Consensus       244 ~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          244 DRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCEEEEECCCCEEEEEcCCCcc
Confidence            99988999999999999876443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.39  E-value=8.5e-11  Score=133.07  Aligned_cols=272  Identities=8%  Similarity=-0.031  Sum_probs=183.7

Q ss_pred             CCeEEEEEcccceEEeeEEee-eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCe
Q 001366          753 DGLCKYARYSKFEVQGMLRTG-EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKL  831 (1092)
Q Consensus       753 D~~~k~w~~~~~~~~~~l~~~-~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V  831 (1092)
                      ++++.+++....++...+... .-.........+.++ ++.++++...++.|.+||..+..        ....+......
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~--------~~~~i~~~~~p   86 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK--------EVGRITGFTSP   86 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC--------EEEEEECCSSE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccE--------EEEEcCCCCCC
Confidence            567788887766654432110 001122456778775 45566666678999999987521        11111234668


Q ss_pred             EEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccC-----ccEEEEEEecCCCCEEEEEe-CCCcEEEEecCCCc
Q 001366          832 SCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHE-----KRAWSVDFSQVHPTKLASGS-DDCSVKLWNINEKN  905 (1092)
Q Consensus       832 ~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~-----~~V~sv~fsp~~~~~laSgs-~Dg~I~iWDl~~~~  905 (1092)
                      ..++++++ +.++++...++.|.+||..+++....+....     .....+++ . ++.++++.. .+++|.+||+.+++
T Consensus        87 ~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~  163 (328)
T 3dsm_A           87 RYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDK  163 (328)
T ss_dssp             EEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTE
T ss_pred             cEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCe
Confidence            89999887 5555555489999999999998877766433     14557777 3 455555544 48999999999999


Q ss_pred             eeeeEecCCceEEEEEccCCCeEEEEEECC----------CeEEEEEcCCCCcceEEecC-CCCCeEEEEEc-CCCEEEE
Q 001366          906 SLATIKNIANVCCVQFSAHSSHLLAFGSAD----------YRTYCYDLRNARAPWCVLAG-HEKAVSYVKFL-DSGTLVT  973 (1092)
Q Consensus       906 ~l~~l~~~~~V~sl~fsp~~~~~latgs~D----------g~I~vwDlr~~~~~~~~l~~-H~~~V~~v~fs-~~~~L~S  973 (1092)
                      .+.++........+.++|+|. +++++..+          +.|.+||..+.+. ...+.- ....+..++|+ +++.|+.
T Consensus       164 ~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          164 VVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLGDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             EEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred             EEEEEEcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCCCCceeEEEecCCCEEEE
Confidence            888888766778899999985 55555444          7899999987653 333322 12468899999 5777777


Q ss_pred             EECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEec-CCCEEEEE----ecCCcEEEEeCCCCCceeeeecc
Q 001366          974 ASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLST-ADGYIACG----SESNEVYAYHRSLPMPITSYKFG 1047 (1092)
Q Consensus       974 gs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasg----s~Dg~I~Iwd~~~~~~i~~~~~~ 1047 (1092)
                      +..  .|.+||..+.....    .  ..+..+......++++| ++.++++.    ..++.|.+|+.. ++.+.++..|
T Consensus       242 ~~~--~v~~~d~~t~~~~~----~--~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G  311 (328)
T 3dsm_A          242 INN--DIWRMPVEADRVPV----R--PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG  311 (328)
T ss_dssp             ESS--SEEEEETTCSSCCS----S--CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE
T ss_pred             Ecc--EEEEEECCCCceee----e--eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec
Confidence            654  89999997543210    0  01111235678899999 46666666    678999999988 8888888753

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.39  E-value=5.4e-11  Score=129.30  Aligned_cols=234  Identities=9%  Similarity=-0.025  Sum_probs=161.5

Q ss_pred             CeEEEEEecCCCCEEE-EEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceee
Q 001366          830 KLSCVCWNNYIKNYLA-SADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLA  908 (1092)
Q Consensus       830 ~V~~v~~sp~~~~~La-Sgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~  908 (1092)
                      ...+++++++ +.+++ +.+.++.|.+||..++........+...+.++++.+ ++.++++.. ++.|.+||....... 
T Consensus        25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~-  100 (270)
T 1rwi_B           25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQT-  100 (270)
T ss_dssp             CEEEEEECTT-CCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCE-
T ss_pred             CccceEECCC-CCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEe-
Confidence            6788999997 67777 547789999999765543222223335678999998 777666665 889999998765432 


Q ss_pred             eEe--cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEc
Q 001366          909 TIK--NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDL  985 (1092)
Q Consensus       909 ~l~--~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl  985 (1092)
                      .+.  ....+.+++++|++. ++++...++.|.+||..+.... .........+..+++. ++..+++...++.|.+||.
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCE-ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             eeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeE-eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEec
Confidence            332  235789999999985 7777777889999986654321 1122333467889998 4555555556789999998


Q ss_pred             CCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCE
Q 001366          986 KRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFV 1065 (1092)
Q Consensus       986 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V 1065 (1092)
                      ...        ........+...+..++++++|.++++...++.|.+|+........ ..             ..+...+
T Consensus       179 ~~~--------~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-------------~~~~~~p  236 (270)
T 1rwi_B          179 ESN--------NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-------------FTGLNTP  236 (270)
T ss_dssp             TTC--------CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-------------CCSCSCE
T ss_pred             CCC--------ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-------------cCCCCCc
Confidence            732        1111122333668899999999888888788999999876443221 11             1123468


Q ss_pred             EEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1066 SSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1066 ~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .++++++++.++++...++.|++|++
T Consensus       237 ~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          237 LAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eeEEECCCCCEEEEECCCCEEEEEcC
Confidence            99999999999999999999999975

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.39  E-value=1.5e-11  Score=153.98  Aligned_cols=237  Identities=8%  Similarity=-0.034  Sum_probs=156.7

Q ss_pred             CCCCeEEEEEecCCCCEEE-----EEECCCcEEEEECCCCceEEEeeccCccE--EEEEEecCCCCEEEEEeCCCc----
Q 001366          827 NRSKLSCVCWNNYIKNYLA-----SADYDGVVKLWDACTGQTVSHYIEHEKRA--WSVDFSQVHPTKLASGSDDCS----  895 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~La-----Sgs~DgtV~IWD~~tg~~i~~l~~h~~~V--~sv~fsp~~~~~laSgs~Dg~----  895 (1092)
                      |...+.+++|+|+ +++||     +|+.+.+|++||+.+++.+.  ..+...+  .+++|+| +++.|+.++.|..    
T Consensus       119 ~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          119 GTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSC
T ss_pred             CCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCc
Confidence            4456899999998 77777     33445689999999987641  1122222  6899999 8899999998876    


Q ss_pred             ---------EEEEecCCCce--eeeEe---cCCceEEEEEccCCCeEEEEEECCC----eEEEEEcCCCCcceEEecCCC
Q 001366          896 ---------VKLWNINEKNS--LATIK---NIANVCCVQFSAHSSHLLAFGSADY----RTYCYDLRNARAPWCVLAGHE  957 (1092)
Q Consensus       896 ---------I~iWDl~~~~~--l~~l~---~~~~V~sl~fsp~~~~~latgs~Dg----~I~vwDlr~~~~~~~~l~~H~  957 (1092)
                               |++|++.++..  ...+.   +...+.++.|+|+|. +|++++.++    .|++||..++.  ...+..+.
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~  271 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEKD--FRLLVKGV  271 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCSS--CEEEEECS
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCCc--eEEeecCC
Confidence                     99999998763  22232   235688999999997 455454444    67777654432  34555566


Q ss_pred             CCeEEEEEcCCCEEEEEEC----CCeEEEEEcCCCCCCCCCCCceeEEEcCC--CCCeEEEEEecCCCEEEEEecCCcEE
Q 001366          958 KAVSYVKFLDSGTLVTAST----DNKLKLWDLKRTSHTGPSTNACSLTFSGH--TNEKNFVGLSTADGYIACGSESNEVY 1031 (1092)
Q Consensus       958 ~~V~~v~fs~~~~L~Sgs~----Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~spdg~~lasgs~Dg~I~ 1031 (1092)
                      ..+....+++++ |+..+.    ++.|.+||+.+...      .....+..|  ...+..++|+ ++.++++...|+..+
T Consensus       272 ~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~------~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~  343 (695)
T 2bkl_A          272 GAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPAR------ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE  343 (695)
T ss_dssp             SCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSG------GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred             CceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCc------cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            666666677666 554443    57899999874211      011333333  4457788888 677888999999888


Q ss_pred             EEeCC-CCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEe----cCCeEEEEEc
Q 001366         1032 AYHRS-LPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAAN----SSGCIKVLQM 1091 (1092)
Q Consensus      1032 Iwd~~-~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs----~DG~V~vW~l 1091 (1092)
                      ||... .+..+..+.+             .....|.+++++|++..|+...    ..+.|++|++
T Consensus       344 l~~~~~~g~~~~~l~~-------------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          344 VRVATLKGKPVRTVQL-------------PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             EEEEETTCCEEEECCC-------------SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             EEEEeCCCCeeEEecC-------------CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            88654 2333332221             1134577888999988776332    3477888885

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.39  E-value=3.7e-10  Score=137.33  Aligned_cols=269  Identities=13%  Similarity=0.027  Sum_probs=185.5

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECC--CCceEEE
Q 001366          789 RDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDAC--TGQTVSH  866 (1092)
Q Consensus       789 pdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~--tg~~i~~  866 (1092)
                      +.+.++++...+++|.+||..+..        ....+.....+.++.|+|+ ++++++++.|+.|.+||+.  +++.+.+
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~--------v~~~i~~g~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYE--------IKTVLDTGYAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAE  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCC--------EEEEEECSSCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCe--------EEEEEeCCCCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEE
Confidence            445577788889999999987521        1112223445679999998 8888899999999999996  8888888


Q ss_pred             eeccCccEEEEEEe----cCCCCEEEEEe-CCCcEEEEecCCCceeeeEecC------------CceEEEEEccCCCeEE
Q 001366          867 YIEHEKRAWSVDFS----QVHPTKLASGS-DDCSVKLWNINEKNSLATIKNI------------ANVCCVQFSAHSSHLL  929 (1092)
Q Consensus       867 l~~h~~~V~sv~fs----p~~~~~laSgs-~Dg~I~iWDl~~~~~l~~l~~~------------~~V~sl~fsp~~~~~l  929 (1092)
                      +.... ....++|+    | +++++++++ .+++|.|+|..+.+.+.++...            ..+..+.+++++..++
T Consensus       236 i~~G~-~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v  313 (567)
T 1qks_A          236 IKIGS-EARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI  313 (567)
T ss_dssp             EECCS-EEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred             EecCC-CCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence            77543 46799999    6 777766555 5699999999999988877631            2578899999887677


Q ss_pred             EEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEE-CCCeEEEEEcCCCCCCCCCCCceeEEEcC---
Q 001366          930 AFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTAS-TDNKLKLWDLKRTSHTGPSTNACSLTFSG--- 1004 (1092)
Q Consensus       930 atgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs-~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~--- 1004 (1092)
                      +....+|.|.++|..+.+...............+.|+ ++.++++++ .+++|.++|+.+        +..+..+.-   
T Consensus       314 v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t--------~kl~~~i~vgg~  385 (567)
T 1qks_A          314 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE--------GKLVAIEDTGGQ  385 (567)
T ss_dssp             EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT--------TEEEEEEECSSS
T ss_pred             EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC--------CcEEEEEeccCc
Confidence            7777789999999987543222222334457788898 666766554 688999999984        333333322   


Q ss_pred             --CCCCeEEEEEecCCCEE-EEEe-cCCcEEEEeCCC-------CCceeeeeccccCCCCCccccCCCCCCEEEEEEeCC
Q 001366         1005 --HTNEKNFVGLSTADGYI-ACGS-ESNEVYAYHRSL-------PMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRR 1073 (1092)
Q Consensus      1005 --h~~~V~~v~~spdg~~l-asgs-~Dg~I~Iwd~~~-------~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd 1073 (1092)
                        |......+ ++|+++.+ +++. .++.|.+++...       .+.+.++..              .+..-..|..+|+
T Consensus       386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~--------------~g~g~~~i~~~p~  450 (567)
T 1qks_A          386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA--------------LGGGSLFIKTHPN  450 (567)
T ss_dssp             SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--------------SCSCCCCEECCTT
T ss_pred             CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec--------------CCCCCEEEEeCCC
Confidence              33222112 68875544 4443 468999999876       344444431              0111233568999


Q ss_pred             CCEEEEEec-------CCeEEEEEc
Q 001366         1074 SDMVVAANS-------SGCIKVLQM 1091 (1092)
Q Consensus      1074 ~~~Lasgs~-------DG~V~vW~l 1091 (1092)
                      +++|.+...       .++|.|+|+
T Consensus       451 ~~~l~v~~~~~~~~~~~~~v~v~d~  475 (567)
T 1qks_A          451 SQYLYVDATLNPEAEISGSVAVFDI  475 (567)
T ss_dssp             CSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred             CCeEEEecCCCCCcccCceEEEEEC
Confidence            999988763       358999885

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.39  E-value=1.5e-09  Score=119.15  Aligned_cols=278  Identities=6%  Similarity=0.000  Sum_probs=188.0

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEE
Q 001366          776 NNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKL  855 (1092)
Q Consensus       776 ~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~I  855 (1092)
                      ......+.+++++++|.++++...++.|.+|+... .   ...   .........+.++++.++ +.++++...++.|..
T Consensus        16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~---~~~---~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~   87 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQSG-R---IKE---FEVPTPDAKVMCLIVSSL-GDIWFTENGANKIGK   87 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C---EEE---EECSSTTCCEEEEEECTT-SCEEEEETTTTEEEE
T ss_pred             CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCCC-c---eEE---EECCCCCCcceeEEECCC-CCEEEEecCCCeEEE
Confidence            34556788999999999888887789999998652 1   110   011123467889999987 777777666789999


Q ss_pred             EECCCCceEE-EeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeee-Ee-cCCceEEEEEccCCCeEEEEE
Q 001366          856 WDACTGQTVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLAT-IK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       856 WD~~tg~~i~-~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~-l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      ||.. ++... .+......+.++++.+ ++.++++...++.|..||.. ++.... +. ....+.++++++++. ++++.
T Consensus        88 ~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~  163 (300)
T 2qc5_A           88 LSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTE  163 (300)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEE
T ss_pred             ECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEe
Confidence            9987 65432 2222346689999998 78888877778899999987 554422 22 245689999999985 66666


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC-CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD-SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~-~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~ 1011 (1092)
                      ..++.|..||. +++........+...+..+++.+ +..+++....+.|.+||.. ..       .....+..+...+.+
T Consensus       164 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-------~~~~~~~~~~~~~~~  234 (300)
T 2qc5_A          164 NQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GE-------ISEYDIPTPNARPHA  234 (300)
T ss_dssp             TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-------EEEEECSSTTCCEEE
T ss_pred             cCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-Cc-------EEEEECCCCCCCceE
Confidence            66789999998 44332222334456788999984 4444444456789999973 11       111223334567889


Q ss_pred             EEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1012 v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      ++++++|.++++...++.|..|+. .+. +..+..            ......+.++++.++|.++++.. + .|..++
T Consensus       235 i~~d~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~------------~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~  297 (300)
T 2qc5_A          235 ITAGKNSEIWFTEWGANQIGRITN-DNT-IQEYQL------------QTENAEPHGITFGKDGSVWFALK-C-KIGKLN  297 (300)
T ss_dssp             EEECSTTCEEEEETTTTEEEEECT-TSC-EEEEEC------------CSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred             EEECCCCCEEEeccCCCeEEEECC-CCc-EEEEEC------------CccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence            999999987777767789999987 333 222221            11234578899999999777665 4 666555

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.38  E-value=3.7e-12  Score=146.25  Aligned_cols=230  Identities=10%  Similarity=-0.002  Sum_probs=153.7

Q ss_pred             CeEEEEEecCCCCEEEEEECC---CcEEEEECCCCceEEEeeccCcc-EEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 001366          830 KLSCVCWNNYIKNYLASADYD---GVVKLWDACTGQTVSHYIEHEKR-AWSVDFSQVHPTKLASGSDDCSVKLWNINEKN  905 (1092)
Q Consensus       830 ~V~~v~~sp~~~~~LaSgs~D---gtV~IWD~~tg~~i~~l~~h~~~-V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~  905 (1092)
                      .+.+++|+|+ +++|+.++.+   ..|.+||+.+++.... ..+... ...+.|+| +++.|+.++.++.|.+||+.+++
T Consensus        37 ~~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           37 YFYQKCFTQD-GKKLLFAGDFDGNRNYYLLNLETQQAVQL-TEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             CTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTTEEEEC-CCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCC
T ss_pred             eeecCcCCCC-CCEEEEEEecCCCceEEEEECCCCcEEEe-ecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCC
Confidence            3667889998 7776666443   4788889988875443 333333 33478999 89999999999999999999887


Q ss_pred             eeeeEecCCc-eEE-------------------EEEccCCCeEEEEE-----ECCCeEEEEEcCCCCcceEEecCCCCCe
Q 001366          906 SLATIKNIAN-VCC-------------------VQFSAHSSHLLAFG-----SADYRTYCYDLRNARAPWCVLAGHEKAV  960 (1092)
Q Consensus       906 ~l~~l~~~~~-V~s-------------------l~fsp~~~~~latg-----s~Dg~I~vwDlr~~~~~~~~l~~H~~~V  960 (1092)
                      .......... ...                   +.|+|++. .++.+     ..+..|++||+.+++.  ..+..+...+
T Consensus       114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~  190 (396)
T 3c5m_A          114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWL  190 (396)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCE
T ss_pred             cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcE--EeeccCCccc
Confidence            6655542222 112                   34677765 33322     4567899999987653  2333567788


Q ss_pred             EEEEEcC--CCEEEEEECC------CeEEEEEcCCCCCCCCCCCceeEEEcCC--CCCeEEEEEecCCCEEEEEecC---
Q 001366          961 SYVKFLD--SGTLVTASTD------NKLKLWDLKRTSHTGPSTNACSLTFSGH--TNEKNFVGLSTADGYIACGSES--- 1027 (1092)
Q Consensus       961 ~~v~fs~--~~~L~Sgs~D------g~I~vWDl~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~spdg~~lasgs~D--- 1027 (1092)
                      ..+.|++  +..|+..+.+      ..|.+||+...         ....+..+  ...+..++|+|+|++|+.++.+   
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---------~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  261 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS---------NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ  261 (396)
T ss_dssp             EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC---------CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred             ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC---------ceeEeeccCCCccccceEECCCCCEEEEEecCCCC
Confidence            9999986  4556665543      36888887632         12233333  2247788999999988777654   


Q ss_pred             --CcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC-CCCEEEEEe----------------cCCeEEE
Q 001366         1028 --NEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR-RSDMVVAAN----------------SSGCIKV 1088 (1092)
Q Consensus      1028 --g~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp-d~~~Lasgs----------------~DG~V~v 1088 (1092)
                        +.|++||+.+++......+            .    ... ++|+| ++++|++++                .++.|++
T Consensus       262 ~~~~l~~~d~~~g~~~~l~~~------------~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~  324 (396)
T 3c5m_A          262 TDRVIYKANPETLENEEVMVM------------P----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV  324 (396)
T ss_dssp             CCEEEEEECTTTCCEEEEEEC------------C----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred             ccceEEEEECCCCCeEEeeeC------------C----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence              4499999887764332211            0    123 89999 999888765                3478999


Q ss_pred             EEc
Q 001366         1089 LQM 1091 (1092)
Q Consensus      1089 W~l 1091 (1092)
                      |++
T Consensus       325 ~d~  327 (396)
T 3c5m_A          325 LNT  327 (396)
T ss_dssp             EET
T ss_pred             Eec
Confidence            985

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.36  E-value=5.3e-11  Score=150.06  Aligned_cols=238  Identities=13%  Similarity=0.020  Sum_probs=156.1

Q ss_pred             CCeEEEEEecCCCCEEEEEECC-----CcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCc--------
Q 001366          829 SKLSCVCWNNYIKNYLASADYD-----GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCS--------  895 (1092)
Q Consensus       829 ~~V~~v~~sp~~~~~LaSgs~D-----gtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~--------  895 (1092)
                      ..+..++|+|| +++||.++.+     .+|++||+.+++.+.. ..+...+.+++|+| + +.|+.++.|+.        
T Consensus       163 ~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          163 TALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred             EEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence            46889999998 7777766544     3699999999987543 22222346899999 7 77887777654        


Q ss_pred             ------EEEEecCCCce--eeeEec---CCceEEEEEccCCCeEEEEEECC-----CeEEEEEcCCCCcc-eEEecCCCC
Q 001366          896 ------VKLWNINEKNS--LATIKN---IANVCCVQFSAHSSHLLAFGSAD-----YRTYCYDLRNARAP-WCVLAGHEK  958 (1092)
Q Consensus       896 ------I~iWDl~~~~~--l~~l~~---~~~V~sl~fsp~~~~~latgs~D-----g~I~vwDlr~~~~~-~~~l~~H~~  958 (1092)
                            |.+|++.++..  ...+..   ...+.++.|+|+|. +|+..+.+     ..|++||+.++... ...+..+..
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  317 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK  317 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence                  88999987753  223332   22488999999997 55555543     48999999876322 345555555


Q ss_pred             CeEEEEEcCCCEEEEEECC----CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          959 AVSYVKFLDSGTLVTASTD----NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       959 ~V~~v~fs~~~~L~Sgs~D----g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      .+....+.+++.|+..+.+    +.|.+||+.+..      ......+..+...+..++++ ++.++++...|+..+||.
T Consensus       318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~------~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  390 (741)
T 1yr2_A          318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST------PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA  390 (741)
T ss_dssp             SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS------CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred             ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc------cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            5555555677888777654    459999987321      12223334444556677777 556788888899877775


Q ss_pred             CC-CCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEE-EEe---cCCeEEEEEc
Q 001366         1035 RS-LPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVV-AAN---SSGCIKVLQM 1091 (1092)
Q Consensus      1035 ~~-~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~La-sgs---~DG~V~vW~l 1091 (1092)
                      .. .+..+..+.+             .+...|..++|+|++..|+ +.+   ..+.|++|++
T Consensus       391 ~~~~g~~~~~l~~-------------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          391 FDLDGKPAGAVSL-------------PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EETTSCEEEECBC-------------SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             EeCCCCceeeccC-------------CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            44 2333332221             1245688999999987665 322   3478888885

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.33  E-value=4.5e-10  Score=124.78  Aligned_cols=243  Identities=10%  Similarity=0.094  Sum_probs=162.3

Q ss_pred             CCEEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          780 NVICSISFDRDEDHFAA-------AGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       780 ~~V~sl~fspdg~~lat-------gg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      ....+++|+++|.++++       +..++.|.+|+.....   ..........++...+.+++++++.+ .|..++.++.
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~i~~~~~~g-~l~v~~~~~~   93 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---KTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRLG   93 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---EEEEECCEETTEECCEEEEEECSSSS-EEEEEETTTE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---EEEEEecccCCCCCCCceEEEecCCC-cEEEEECCCC
Confidence            35578999999998888       5678899999865421   11000000011345688999998633 4444555558


Q ss_pred             EEEEECCCCceEEE-eec----cCccEEEEEEecCCCCEEEEEeCC---------------CcEEEEecCCCceeeeEec
Q 001366          853 VKLWDACTGQTVSH-YIE----HEKRAWSVDFSQVHPTKLASGSDD---------------CSVKLWNINEKNSLATIKN  912 (1092)
Q Consensus       853 V~IWD~~tg~~i~~-l~~----h~~~V~sv~fsp~~~~~laSgs~D---------------g~I~iWDl~~~~~l~~l~~  912 (1092)
                      |.+||.. ++.... ...    ....+.++++.+ ++.++++...+               +.|..||.. ++.......
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~  170 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA  170 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence            9999988 765432 221    123578999999 78887777655               567777765 554444444


Q ss_pred             CCceEEEEEc----cCCCeEEEEEECCCeEEEEEcC-CCCc----ceEEecCCC-CCeEEEEEc-CCCEEEEEECCCeEE
Q 001366          913 IANVCCVQFS----AHSSHLLAFGSADYRTYCYDLR-NARA----PWCVLAGHE-KAVSYVKFL-DSGTLVTASTDNKLK  981 (1092)
Q Consensus       913 ~~~V~sl~fs----p~~~~~latgs~Dg~I~vwDlr-~~~~----~~~~l~~H~-~~V~~v~fs-~~~~L~Sgs~Dg~I~  981 (1092)
                      ......++|+    |++..++++...++.|++||+. ++..    ....+.++. ..+..+++. ++..+++...++.|.
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence            4567889999    9985455666678999999986 3321    222334444 567889998 555666666889999


Q ss_pred             EEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEE-EEEecCCcEEEEeCCC
Q 001366          982 LWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYI-ACGSESNEVYAYHRSL 1037 (1092)
Q Consensus       982 vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~I~Iwd~~~ 1037 (1092)
                      +||..+        +.....+..+...+.+++|+++|..| ++...++.|..|+...
T Consensus       251 ~~d~~~--------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          251 VFGPDG--------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EECTTC--------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEcCCC--------CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999863        33445556666789999999999944 5555678899998764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.33  E-value=1.8e-09  Score=124.61  Aligned_cols=267  Identities=10%  Similarity=-0.010  Sum_probs=174.1

Q ss_pred             cCCCCEEEEEeC--CC---cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEE----------CCCc
Q 001366          788 DRDEDHFAAAGV--SK---KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD----------YDGV  852 (1092)
Q Consensus       788 spdg~~latgg~--D~---~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs----------~Dgt  852 (1092)
                      .|++.++.++..  ..   +|.+||..+..   ...    .......+  .++++|+ +++|+.+.          .+++
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~---~~~----~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~   98 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGS---ILG----HVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCe---EEE----EecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCe
Confidence            356665554432  22   78999986521   111    11111222  8999998 77777665          3688


Q ss_pred             EEEEECCCCceEEEeecc-------CccEEEEEEecCCCCEEEEEeC--CCcEEEEecCCCceeee-EecCCceEEEEEc
Q 001366          853 VKLWDACTGQTVSHYIEH-------EKRAWSVDFSQVHPTKLASGSD--DCSVKLWNINEKNSLAT-IKNIANVCCVQFS  922 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~h-------~~~V~sv~fsp~~~~~laSgs~--Dg~I~iWDl~~~~~l~~-l~~~~~V~sl~fs  922 (1092)
                      |.+||..+.+.+..+...       ......+.|+| ++++|+.++.  ++.|.++| .+++.+.+ +....   |+.+.
T Consensus        99 v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---~~~~~  173 (373)
T 2mad_H           99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---CYHIH  173 (373)
T ss_pred             EEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---eEEEE
Confidence            999999998887766422       12345899999 8888888764  57899999 99998887 66543   35566


Q ss_pred             cCCCeEEEEEECCCeEEEEEcCCCCcceEEe----cCCCCCe-EEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCC
Q 001366          923 AHSSHLLAFGSADYRTYCYDLRNARAPWCVL----AGHEKAV-SYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTN  996 (1092)
Q Consensus       923 p~~~~~latgs~Dg~I~vwDlr~~~~~~~~l----~~H~~~V-~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~  996 (1092)
                      |++...+++.+.||.+.++|. +++......    .....++ ....|. +++.++..+..+.+.+.|+.....      
T Consensus       174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~------  246 (373)
T 2mad_H          174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA------  246 (373)
T ss_pred             eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc------
Confidence            777667788889999999999 665321111    0111121 223343 344444444778999999863211      


Q ss_pred             ceeEEEcC----------CCCCeEEEEEecCCCEEEEEec----------CCcEEEEeCCCCCceeeeeccccCCCCCcc
Q 001366          997 ACSLTFSG----------HTNEKNFVGLSTADGYIACGSE----------SNEVYAYHRSLPMPITSYKFGSIDPISGKE 1056 (1092)
Q Consensus       997 ~~~~~l~~----------h~~~V~~v~~spdg~~lasgs~----------Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~ 1056 (1092)
                      ..+..+.-          .......++++|+++.+..+..          ++.|.++|..+.+.+.++..+         
T Consensus       247 ~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g---------  317 (373)
T 2mad_H          247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG---------  317 (373)
T ss_pred             eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC---------
Confidence            11111110          1122445789999886655432          367999999999988887642         


Q ss_pred             ccCCCCCCEEEEEEeCCCC-EEEEEe-cCCeEEEEEc
Q 001366         1057 TDDDNGLFVSSVCWRRRSD-MVVAAN-SSGCIKVLQM 1091 (1092)
Q Consensus      1057 ~~~~h~~~V~sva~spd~~-~Lasgs-~DG~V~vW~l 1091 (1092)
                            ....+++|+||++ .|++++ .++.|.|||+
T Consensus       318 ------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          318 ------HDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             ------CCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence                  2478999999999 788887 5899999985

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.30  E-value=3.3e-09  Score=116.41  Aligned_cols=235  Identities=6%  Similarity=-0.044  Sum_probs=165.3

Q ss_pred             CCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEE-eeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce
Q 001366          828 RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSH-YIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS  906 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~-l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~  906 (1092)
                      ...+.++++.++ +.++++...++.|.+||.. ++.... +..+...+.++++.+ ++.++++...++.|..||.. ++ 
T Consensus        14 ~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~-   88 (299)
T 2z2n_A           14 DTGPYGITVSDK-GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GI-   88 (299)
T ss_dssp             SCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SC-
T ss_pred             CCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-Cc-
Confidence            467899999997 7777766668999999987 554322 223456789999998 78888887778899999986 33 


Q ss_pred             eeeEe---cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC-CCEEEEEECCCeEEE
Q 001366          907 LATIK---NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD-SGTLVTASTDNKLKL  982 (1092)
Q Consensus       907 l~~l~---~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~-~~~L~Sgs~Dg~I~v  982 (1092)
                      +..+.   ....+.++++++++. ++++...++.|.+||. +++........+...+..+++.+ +..+++...++.|.+
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  166 (299)
T 2z2n_A           89 IKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR  166 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             EEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence            33333   345789999999884 6666667889999998 44432222334456789999984 444555555789999


Q ss_pred             EEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCC
Q 001366          983 WDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNG 1062 (1092)
Q Consensus       983 WDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~ 1062 (1092)
                      ||. +...       ....+..+...+..++++++|.++++...++.|.+|+. .+.. ..+..            ..+.
T Consensus       167 ~~~-~g~~-------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~------------~~~~  224 (299)
T 2z2n_A          167 ITE-SGDI-------TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-TEFKI------------PTPN  224 (299)
T ss_dssp             ECT-TCCE-------EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEEC------------SSTT
T ss_pred             EcC-CCcE-------EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-EEEEC------------CCCC
Confidence            997 3211       11122334556889999999998877777889999998 5542 22211            1234


Q ss_pred             CCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1063 LFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1063 ~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ..+.++++++++.++++...++.|.+|+.
T Consensus       225 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          225 ARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CCceeEEECCCCCEEEeccCCceEEEECC
Confidence            56899999999998877767888888873

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.29  E-value=9.1e-11  Score=147.87  Aligned_cols=242  Identities=13%  Similarity=0.056  Sum_probs=159.5

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          778 SANVICSISFDRDEDHFAAAGVS-----KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       778 h~~~V~sl~fspdg~~latgg~D-----~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      |...+.+++|+|||++||.++.+     .+|++||+.+...  ..    .  ..+...+..++|+|+  +.|+.++.|+.
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~--~~----~--~~~~~~~~~~~wspD--~~l~~~~~~~~  230 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP--LA----D--ELKWVKFSGLAWLGN--DALLYSRFAEP  230 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE--EE----E--EEEEEESCCCEESTT--SEEEEEECCCC
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC--CC----c--cCCCceeccEEEECC--CEEEEEEecCc
Confidence            33467889999999999987754     4699999876321  11    0  011122457899997  56666666554


Q ss_pred             --------------EEEEECCCCc--eEEEee--ccCccEEEEEEecCCCCEEEEEeCCC-----cEEEEecCCC--cee
Q 001366          853 --------------VKLWDACTGQ--TVSHYI--EHEKRAWSVDFSQVHPTKLASGSDDC-----SVKLWNINEK--NSL  907 (1092)
Q Consensus       853 --------------V~IWD~~tg~--~i~~l~--~h~~~V~sv~fsp~~~~~laSgs~Dg-----~I~iWDl~~~--~~l  907 (1092)
                                    |++|++.+++  ....+.  .+...+.++.|+| +++.|+..+.++     .|.+||+.++  .+.
T Consensus       231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  309 (741)
T 1yr2_A          231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPV  309 (741)
T ss_dssp             --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred             ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence                          8999998775  233333  3334588999999 888887777544     8999999877  413


Q ss_pred             eeEe-cCCceEEEEEccCCCeEEEEEEC----CCeEEEEEcCCCC-cceEEecCCCCCeEEEEEcCCCEEEEEECCCeEE
Q 001366          908 ATIK-NIANVCCVQFSAHSSHLLAFGSA----DYRTYCYDLRNAR-APWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLK  981 (1092)
Q Consensus       908 ~~l~-~~~~V~sl~fsp~~~~~latgs~----Dg~I~vwDlr~~~-~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~  981 (1092)
                      ..+. ....+.... +|++. .|+..+.    ++.|++||+.++. .....+..+...+..+.|..+..+++...|+..+
T Consensus       310 ~~l~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~  387 (741)
T 1yr2_A          310 TALIPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQ  387 (741)
T ss_dssp             EEEECSSSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEE
T ss_pred             EEecCCCCceEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEE
Confidence            4444 333444443 48886 4444444    4569999998742 3233445555667778887666778888999988


Q ss_pred             EEEcCCCCCCCCCCCceeEEEcC-CCCCeEEEEEecCCCEEE-EEe---cCCcEEEEeCCCCC
Q 001366          982 LWDLKRTSHTGPSTNACSLTFSG-HTNEKNFVGLSTADGYIA-CGS---ESNEVYAYHRSLPM 1039 (1092)
Q Consensus       982 vWDl~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~la-sgs---~Dg~I~Iwd~~~~~ 1039 (1092)
                      ||.+..       .+.....+.. +...+..++++|+++.|+ +.+   ..++|++||+.+++
T Consensus       388 l~~~~~-------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          388 VLAFDL-------DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEET-------TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEeC-------CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            887652       1234455543 356688899999987554 222   34789999988765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.26  E-value=1.3e-09  Score=125.74  Aligned_cols=178  Identities=16%  Similarity=0.095  Sum_probs=135.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC----CCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          781 VICSISFDRDEDHFAAAGVSKKIKIFEFNALF----NDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       781 ~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~----~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      .++.+++++...++++|+.+ .++||++....    ..... ..+.....+.. |+.|+|  + +.+|+++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~-~~~~~~~~lp~-V~~l~f--d-~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTP-LTFKWEKEIPD-VIFVCF--H-GDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCC-CCCSEEEECTT-EEEEEE--E-TTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccccc-ccceEEeeCCC-eeEEEE--C-CCEEEEE-cCCcEEEE
Confidence            68889999999999999987 67779976421    00000 12223344566 999999  4 7889888 88999999


Q ss_pred             ECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCC
Q 001366          857 DACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADY  936 (1092)
Q Consensus       857 D~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg  936 (1092)
                      |+.+.........|...+.++.+.+  + .+++++.||.|.+||+.++....   ....|.|++|+|+|   ++.|..||
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~--p-~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG---~~vg~~dg  182 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVN--N-TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ---LAVLLKDR  182 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE---EEEEETTS
T ss_pred             EchhhhccCccceeecceeeEEecC--C-CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc---eEEEEcCC
Confidence            9988776666777888898888776  2 38899999999999999877643   44689999999998   57799999


Q ss_pred             eEEEEEcCCCCcc-eEEe------c---CCCCCeEEEEEc-CCCEEEEE
Q 001366          937 RTYCYDLRNARAP-WCVL------A---GHEKAVSYVKFL-DSGTLVTA  974 (1092)
Q Consensus       937 ~I~vwDlr~~~~~-~~~l------~---~H~~~V~~v~fs-~~~~L~Sg  974 (1092)
                      .+++|+....... ..++      .   +|...|.+|.|. ++.++++-
T Consensus       183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            9999988765421 2344      2   478899999998 55566653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.25  E-value=2.9e-09  Score=118.18  Aligned_cols=239  Identities=9%  Similarity=0.068  Sum_probs=160.3

Q ss_pred             CCCeEEEEEecCCCCEEEE-------EECCCcEEEEECCCCceEEEee----ccCccEEEEEEecCC-CCEEEEEeCCCc
Q 001366          828 RSKLSCVCWNNYIKNYLAS-------ADYDGVVKLWDACTGQTVSHYI----EHEKRAWSVDFSQVH-PTKLASGSDDCS  895 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaS-------gs~DgtV~IWD~~tg~~i~~l~----~h~~~V~sv~fsp~~-~~~laSgs~Dg~  895 (1092)
                      -....+++|+++ +.++++       +..++.|.+||..+++......    ++...+.++.+++ + +.++++. ..+.
T Consensus        17 ~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~-~~~~   93 (314)
T 1pjx_A           17 IPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVAD-MRLG   93 (314)
T ss_dssp             CTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEE-TTTE
T ss_pred             CCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEE-CCCC
Confidence            345689999986 777777       5778999999988887543221    2556789999998 6 6555554 4457


Q ss_pred             EEEEecCCCceeee-Eec-----CCceEEEEEccCCCeEEEEEECC---------------CeEEEEEcCCCCcceEEec
Q 001366          896 VKLWNINEKNSLAT-IKN-----IANVCCVQFSAHSSHLLAFGSAD---------------YRTYCYDLRNARAPWCVLA  954 (1092)
Q Consensus       896 I~iWDl~~~~~l~~-l~~-----~~~V~sl~fsp~~~~~latgs~D---------------g~I~vwDlr~~~~~~~~l~  954 (1092)
                      |.+||.. ++.... ...     ...+.++++++++. ++++...+               +.|..||.. ++  ...+.
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~  168 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVD  168 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEE
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEec
Confidence            9999998 665433 221     23588999999985 55555544               578888765 32  22222


Q ss_pred             CCCCCeEEEEEc----CCC-EEEEE-ECCCeEEEEEcCC-CCCCCCCCCceeEEEcCCC-CCeEEEEEecCCCEEEEEec
Q 001366          955 GHEKAVSYVKFL----DSG-TLVTA-STDNKLKLWDLKR-TSHTGPSTNACSLTFSGHT-NEKNFVGLSTADGYIACGSE 1026 (1092)
Q Consensus       955 ~H~~~V~~v~fs----~~~-~L~Sg-s~Dg~I~vWDl~~-~~~~~~~~~~~~~~l~~h~-~~V~~v~~spdg~~lasgs~ 1026 (1092)
                      .+......++|+    +++ .|+.+ ..++.|.+||+.. +..   ........+.++. .....++++++|.++++...
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~---~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI---ENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE---EEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc---ccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence            333456788887    665 45444 5678999999761 110   0001223333443 56788999999998888888


Q ss_pred             CCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEE-EEEecCCeEEEEEc
Q 001366         1027 SNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMV-VAANSSGCIKVLQM 1091 (1092)
Q Consensus      1027 Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~L-asgs~DG~V~vW~l 1091 (1092)
                      ++.|.+|+..+++.+..+.              .+...+.+++|+|++..| ++...++.|.+|++
T Consensus       246 ~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          246 SSHIEVFGPDGGQPKMRIR--------------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             TTEEEEECTTCBSCSEEEE--------------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEcCCCCcEeEEEe--------------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            8999999987666554443              123568999999999944 55556788988875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.24  E-value=1.6e-09  Score=119.57  Aligned_cols=231  Identities=10%  Similarity=-0.011  Sum_probs=165.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCC-CCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEee
Q 001366          790 DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNR-SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYI  868 (1092)
Q Consensus       790 dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~  868 (1092)
                      .+++|++++.|+.|.+||..+..   ...    ....+. ..+.++.+.|+ +++|+  +.++.|+.||. +|+.+..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~---~~w----~~~~~~~~~~~~~~~~pd-G~ilv--s~~~~V~~~d~-~G~~~W~~~   72 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKE---IVW----EYPLEKGWECNSVAATKA-GEILF--SYSKGAKMITR-DGRELWNIA   72 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTE---EEE----EEECCTTCCCCEEEECTT-SCEEE--ECBSEEEEECT-TSCEEEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCe---EEE----EeCCCccCCCcCeEECCC-CCEEE--eCCCCEEEECC-CCCEEEEEc
Confidence            46789999999999999975411   111    111122 46789999998 78888  45789999999 899999988


Q ss_pred             ccC-ccEEEEEEecCCCCEEEEEeC-CCcEEEEecCCCceeeeEecC-------CceEEEEEccCCCeEEEEEECCCeEE
Q 001366          869 EHE-KRAWSVDFSQVHPTKLASGSD-DCSVKLWNINEKNSLATIKNI-------ANVCCVQFSAHSSHLLAFGSADYRTY  939 (1092)
Q Consensus       869 ~h~-~~V~sv~fsp~~~~~laSgs~-Dg~I~iWDl~~~~~l~~l~~~-------~~V~sl~fsp~~~~~latgs~Dg~I~  939 (1092)
                      .+. ..+.++.+.+ +++++++.+. ++.|..+|. +++.+..+...       .....+++.++|. ++++...++.|.
T Consensus        73 ~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~  149 (276)
T 3no2_A           73 APAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVR  149 (276)
T ss_dssp             CCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEE
T ss_pred             CCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEE
Confidence            653 5788999999 8999998887 778888886 68877776521       2345667888885 888899999999


Q ss_pred             EEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCC------CCeEEE
Q 001366          940 CYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHT------NEKNFV 1012 (1092)
Q Consensus       940 vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~------~~V~~v 1012 (1092)
                      +||.. ++. +..+..+ ..+.++.+. +++.+++++.++.|..+|..        +++.+.++..+.      ..+..+
T Consensus       150 ~~d~~-G~~-~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~--------tG~~~w~~~~~~~~~~~l~~~~~~  218 (276)
T 3no2_A          150 EIAPN-GQL-LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE--------SNRIVRRVNANDIEGVQLFFVAQL  218 (276)
T ss_dssp             EECTT-SCE-EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT--------TCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred             EECCC-CCE-EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc--------CCcEEEEecCCCCCCccccccccc
Confidence            99987 664 4444443 334556666 67788888888899999987        355666665322      236788


Q ss_pred             EEecCCCEEEEEecC--------CcEEEEeC-CCCCceeeee
Q 001366         1013 GLSTADGYIACGSES--------NEVYAYHR-SLPMPITSYK 1045 (1092)
Q Consensus      1013 ~~spdg~~lasgs~D--------g~I~Iwd~-~~~~~i~~~~ 1045 (1092)
                      ...++|.++++....        +..+++.+ ..++.+..+.
T Consensus       219 ~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          219 FPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             EECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             eEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence            889999988887421        23355555 4666666654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.23  E-value=2.2e-09  Score=123.35  Aligned_cols=270  Identities=11%  Similarity=0.013  Sum_probs=178.7

Q ss_pred             EcCCCCEEEEEeC-----CCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEE----------CCC
Q 001366          787 FDRDEDHFAAAGV-----SKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD----------YDG  851 (1092)
Q Consensus       787 fspdg~~latgg~-----D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs----------~Dg  851 (1092)
                      ..|++..+.+...     ++.|.++|..+..   +..    .......+  .++++|+ ++++++++          .++
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~---v~~----~I~vG~~P--~va~spD-G~~lyVan~~~~r~~~G~~~~  109 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGR---VIG----MIDGGFLP--NPVVADD-GSFIAHASTVFSRIARGERTD  109 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTE---EEE----EEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEE
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCe---EEE----EEECCCCC--cEEECCC-CCEEEEEcccccccccCCCCC
Confidence            3577776666654     6789999986521   111    11112333  4999999 55555543          367


Q ss_pred             cEEEEECCCCceEEEeecc-------CccEEEEEEecCCCCEEEEEeC--CCcEEEEecCCCceeeeEecCCceEEEEEc
Q 001366          852 VVKLWDACTGQTVSHYIEH-------EKRAWSVDFSQVHPTKLASGSD--DCSVKLWNINEKNSLATIKNIANVCCVQFS  922 (1092)
Q Consensus       852 tV~IWD~~tg~~i~~l~~h-------~~~V~sv~fsp~~~~~laSgs~--Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fs  922 (1092)
                      +|.+||..+++.+.++.-.       ......+.|+| ++++++.+..  ++.|.++|+.+++.+.++.....   ..+.
T Consensus       110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~  185 (386)
T 3sjl_D          110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIF  185 (386)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE
T ss_pred             EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceee
Confidence            8999999999988887532       12456799999 8888777763  68999999999999999975542   2334


Q ss_pred             cCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCC----CCeE-EEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCC
Q 001366          923 AHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHE----KAVS-YVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTN  996 (1092)
Q Consensus       923 p~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~----~~V~-~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~  996 (1092)
                      |.+...+++.+.||.+.+.++............+.    ..+. ...|. +++.++-.+.+|+|.+.|+.....      
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~------  259 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA------  259 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC------
T ss_pred             cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc------
Confidence            65555777888999999999976322222221111    1221 23554 455555577789999999974321      


Q ss_pred             ceeEEEc---------C-CCCCeEEEEEecCCCEEEEEec----------CCcEEEEeCCCCCceeeeeccccCCCCCcc
Q 001366          997 ACSLTFS---------G-HTNEKNFVGLSTADGYIACGSE----------SNEVYAYHRSLPMPITSYKFGSIDPISGKE 1056 (1092)
Q Consensus       997 ~~~~~l~---------~-h~~~V~~v~~spdg~~lasgs~----------Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~ 1056 (1092)
                      .....+.         + .......++++++++.+.....          .+.|.++|..+.+.+.++..+         
T Consensus       260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---------  330 (386)
T 3sjl_D          260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---------  330 (386)
T ss_dssp             EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---------
T ss_pred             eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---------
Confidence            1111111         0 1112234788999886655432          257999999999999988753         


Q ss_pred             ccCCCCCCEEEEEEeCCCC-EEEEEe-cCCeEEEEEc
Q 001366         1057 TDDDNGLFVSSVCWRRRSD-MVVAAN-SSGCIKVLQM 1091 (1092)
Q Consensus      1057 ~~~~h~~~V~sva~spd~~-~Lasgs-~DG~V~vW~l 1091 (1092)
                            ..+++|++++|++ +|++++ .++.|.|+|.
T Consensus       331 ------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          331 ------HEIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             ------EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             ------CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence                  3588999999996 777765 4899999985

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.19  E-value=5.6e-09  Score=122.05  Aligned_cols=247  Identities=9%  Similarity=0.025  Sum_probs=166.6

Q ss_pred             CCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCC--cEEEEecCCCce
Q 001366          829 SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC--SVKLWNINEKNS  906 (1092)
Q Consensus       829 ~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg--~I~iWDl~~~~~  906 (1092)
                      .....|+|+++ ++++++...++.|++||..+++....... ..... ++|++ ++..|+++..++  .|.+||...+..
T Consensus       131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce
Confidence            45789999987 77777777789999999988776555444 33344 99999 788888888766  789999887665


Q ss_pred             eeeE----e-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEE---ecCCCCCe-E-EEEEcC-CCEEE-EE
Q 001366          907 LATI----K-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV---LAGHEKAV-S-YVKFLD-SGTLV-TA  974 (1092)
Q Consensus       907 l~~l----~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~---l~~H~~~V-~-~v~fs~-~~~L~-Sg  974 (1092)
                      ...+    . ....+.+++++|++..+++ +..++.|+.||..+....+..   ..++...- . .++|++ ++.|+ +-
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            4444    2 3456789999995544444 667889999999866432110   12222222 3 899985 55554 55


Q ss_pred             ECCCeEEEEEcCCCCCCCCCCCceeEEEcCC---------------CCCeEEEEEecCCCEEEEEe-cCCcEEEEeCCCC
Q 001366          975 STDNKLKLWDLKRTSHTGPSTNACSLTFSGH---------------TNEKNFVGLSTADGYIACGS-ESNEVYAYHRSLP 1038 (1092)
Q Consensus       975 s~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h---------------~~~V~~v~~spdg~~lasgs-~Dg~I~Iwd~~~~ 1038 (1092)
                      ...+.|..||...         . ...+.++               -.....++++++|.++++-+ .++.|+.|+...+
T Consensus       286 ~~~~~I~~~~~~g---------~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          286 QNLSSVYKITPDG---------E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             TTTTEEEEECTTC---------C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             CCCCEEEEEecCC---------C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            5678899998762         1 2233232               24578899999999888888 8999999997666


Q ss_pred             Cceeeeecc-ccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1039 MPITSYKFG-SIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1039 ~~i~~~~~~-~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ........+ ......+.. ....-....+|++++++.++++-..++.|+.+.+
T Consensus       356 ~v~~~~g~~~~~g~~~g~~-~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          356 YVSTVAGQVDVASQIDGTP-LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEEECTTCBSCCCBST-TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEEeCCCCCCCcCCCCh-hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            533222110 000001100 0111246899999999998888888999998865

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.17  E-value=7.5e-12  Score=136.99  Aligned_cols=70  Identities=16%  Similarity=0.026  Sum_probs=59.2

Q ss_pred             cccccCCC-C----CHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh-hcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          305 RQGSSDHG-V----NLREWLNARGHKGKRIECLYIFRQIVALVDYHH-TQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       305 ~~~~~~~G-g----sL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lH-s~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                      ++|||+.+ |    +|.+++...    +..++..++.||+.+|.||| ++||+||||||+|||++.  .++|+|||++..
T Consensus       145 lVmE~~g~~g~~~~~L~~~~~~~----~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NILl~~--~~~liDFG~a~~  218 (258)
T 1zth_A          145 LLMEFIGEDELPAPTLVELGREL----KELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID--KVYFIDMGQAVT  218 (258)
T ss_dssp             EEEECCEETTEECCBHHHHGGGG----GGSCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEEESS--SEEECCCTTCEE
T ss_pred             EEEEecCCCCCccccHHHHhhcc----ChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEEcC--cEEEEECccccc
Confidence            48999942 3    888876431    23467899999999999999 999999999999999988  899999999987


Q ss_pred             cc
Q 001366          379 TL  380 (1092)
Q Consensus       379 ~~  380 (1092)
                      ..
T Consensus       219 ~~  220 (258)
T 1zth_A          219 LR  220 (258)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.17  E-value=5.1e-09  Score=122.38  Aligned_cols=232  Identities=10%  Similarity=0.060  Sum_probs=160.5

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC--cEEEEE
Q 001366          780 NVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG--VVKLWD  857 (1092)
Q Consensus       780 ~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg--tV~IWD  857 (1092)
                      .....|+|+++++++++...++.|++||.....   +     ........... ++|+++ ++.|++++.++  .|.+||
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~---~-----~~~~~~~~~~~-ia~~~~-g~~l~~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK---V-----TTVHPGFKGGK-PAVTKD-KQRVYSIGWEGTHTVYVYM  200 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE---E-----EEEEETCCBCB-CEECTT-SSEEEEEBSSTTCEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE---E-----EEeeccCCCCc-eeEecC-CCcEEEEecCCCceEEEEE
Confidence            467889999999988888888999999986411   1     11111122233 899998 77888888766  799999


Q ss_pred             CCCCceEEEe----eccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeE----e-cCCce---EEEEEccCC
Q 001366          858 ACTGQTVSHY----IEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI----K-NIANV---CCVQFSAHS  925 (1092)
Q Consensus       858 ~~tg~~i~~l----~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l----~-~~~~V---~sl~fsp~~  925 (1092)
                      ...+.....+    ......+++++++|.++ .|+.+..++.|..||..++... .+    . .....   ..++|+|++
T Consensus       201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~  278 (409)
T 3hrp_A          201 KASGWAPTRIGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVD  278 (409)
T ss_dssp             GGGTTCEEEEEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTT
T ss_pred             cCCCceeEEeeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCC
Confidence            8766554444    22456678999999444 4555777889999999876532 23    1 11111   299999976


Q ss_pred             CeEEEEEECCCeEEEEEcCCCCcceEEecCCC---------------CCeEEEEEc-CCCEEEEEE-CCCeEEEEEcCCC
Q 001366          926 SHLLAFGSADYRTYCYDLRNARAPWCVLAGHE---------------KAVSYVKFL-DSGTLVTAS-TDNKLKLWDLKRT  988 (1092)
Q Consensus       926 ~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~---------------~~V~~v~fs-~~~~L~Sgs-~Dg~I~vWDl~~~  988 (1092)
                      ..++++...++.|+.||....   +..+.++.               .....++++ ++..+++-+ .++.|+.||+.++
T Consensus       279 g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          279 SNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             TEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             CEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            568888888899999997643   23333332               357899998 455556666 7889999997532


Q ss_pred             CCCCCCCCceeEEEcCC---------------CCCeEEEEEecCCCEEEEEecCCcEEEEeC
Q 001366          989 SHTGPSTNACSLTFSGH---------------TNEKNFVGLSTADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus       989 ~~~~~~~~~~~~~l~~h---------------~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                               .+.++.++               -.....++++++|.++++-..++.|+.+.+
T Consensus       356 ---------~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          356 ---------YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ---------EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             ---------EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                     23344333               245788999999888888888888888754

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.14  E-value=6.2e-10  Score=128.31  Aligned_cols=177  Identities=14%  Similarity=0.113  Sum_probs=132.6

Q ss_pred             cEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc-----------eeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEE
Q 001366          873 RAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN-----------SLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCY  941 (1092)
Q Consensus       873 ~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~-----------~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vw  941 (1092)
                      .+..+++++ ...++++|+.|+ +++|++....           ....+.... |..|+|  ++. +|+++ .++.|++|
T Consensus        39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~-~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGD-QVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETT-EEEEE-ESSEEEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCC-EEEEE-cCCcEEEE
Confidence            588999999 778899999885 6669876433           223445566 999999  664 77777 88999999


Q ss_pred             EcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEE
Q 001366          942 DLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYI 1021 (1092)
Q Consensus       942 Dlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l 1021 (1092)
                      |+++... ......|...+.++.+.++. +++++.||.|.+||+...        ....    +...|.+++|||+|  +
T Consensus       112 dv~sl~~-~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~--------~~~~----~~~~Vs~v~WSpkG--~  175 (388)
T 1xip_A          112 DLEELSE-FRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTK--------STKQ----LAQNVTSFDVTNSQ--L  175 (388)
T ss_dssp             ESSSTTC-EEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTC--------CEEE----EEESEEEEEECSSE--E
T ss_pred             Echhhhc-cCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCC--------cccc----ccCCceEEEEcCCc--e
Confidence            9998763 34566778889999887443 888999999999999842        2221    34589999999999  6


Q ss_pred             EEEecCCcEEEEeCCCCCc--eeeeeccccCCCCCcccc--CCCCCCEEEEEEeCCCCEEEE
Q 001366         1022 ACGSESNEVYAYHRSLPMP--ITSYKFGSIDPISGKETD--DDNGLFVSSVCWRRRSDMVVA 1079 (1092)
Q Consensus      1022 asgs~Dg~I~Iwd~~~~~~--i~~~~~~~~~~i~~~~~~--~~h~~~V~sva~spd~~~Las 1079 (1092)
                      +.|..||+|++|+......  ...+..       +....  .+|...|.+|+|.+++.+|++
T Consensus       176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~-------Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          176 AVLLKDRSFQSFAWRNGEMEKQFEFSL-------PSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECC-------CHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEEcCCcEEEEcCCCccccccceecC-------CcccccccCCCeeEEEEEEecCCeEEEE
Confidence            7899999999997765553  333321       01111  146788999999999999886

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.13  E-value=5.9e-08  Score=106.35  Aligned_cols=234  Identities=6%  Similarity=-0.064  Sum_probs=163.5

Q ss_pred             CCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEE-EeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce
Q 001366          828 RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVS-HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS  906 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~-~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~  906 (1092)
                      ...+.++++.++ +.+.++...++.|.+||.. ++... .+..+...+.++++.+ ++.++++...++.|..||.. ++.
T Consensus        19 ~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           19 DSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCe
Confidence            457789999987 7777777678999999987 55433 2223346789999998 78877777778899999988 554


Q ss_pred             eeeEe---cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEE
Q 001366          907 LATIK---NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKL  982 (1092)
Q Consensus       907 l~~l~---~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~v  982 (1092)
                       ..+.   ....+.++++.+++. ++++...++.|..||.. ++.....+......+..+++. ++..+++...++.|.+
T Consensus        95 -~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  171 (300)
T 2qc5_A           95 -TEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR  171 (300)
T ss_dssp             -EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             -EEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence             3333   235689999999885 66666668899999987 433222233345678899997 4554455555788999


Q ss_pred             EEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCC
Q 001366          983 WDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNG 1062 (1092)
Q Consensus       983 WDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~ 1062 (1092)
                      ||.. ..       ........+...+..++++++|.++++....+.|.+|+. .+.... +..            ..+.
T Consensus       172 ~~~~-g~-------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~------------~~~~  229 (300)
T 2qc5_A          172 ITNT-GK-------LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDI------------PTPN  229 (300)
T ss_dssp             ECTT-CC-------EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC------------SSTT
T ss_pred             ECCC-Cc-------EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EEC------------CCCC
Confidence            9873 21       111222234556889999999988887777788999987 343222 211            1224


Q ss_pred             CCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1063 LFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1063 ~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      ..+.+|++.+++.+.++...++.|.+|+
T Consensus       230 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          230 ARPHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             CCceEEEECCCCCEEEeccCCCeEEEEC
Confidence            5689999999999887777778888876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.13  E-value=9e-08  Score=110.36  Aligned_cols=262  Identities=10%  Similarity=-0.011  Sum_probs=169.9

Q ss_pred             eEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCCCCcccccce--
Q 001366          755 LCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAG----------VSKKIKIFEFNALFNDSVDVYYPA--  822 (1092)
Q Consensus       755 ~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg----------~D~~I~Iwd~~~~~~~~~~~~~~~--  822 (1092)
                      ++.+++...+++...+..+     ..+  .++|+|||+++.++.          .++.|.+||..+...  . ...+.  
T Consensus        48 ~v~v~D~~t~~~~~~i~~g-----~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--~-~~i~~~~  117 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGG-----FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--I-ADIELPD  117 (373)
T ss_pred             EEEEEECCCCeEEEEecCC-----CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--E-EEEECCC
Confidence            6677887777776555432     233  699999999988876          367899999864211  0 00000  


Q ss_pred             -eeecCCCCeEEEEEecCCCCEEEEEEC--CCcEEEEECCCCceEEE-eeccCccEEEEEEecCCCCEEEEEeCCCcEEE
Q 001366          823 -VEMSNRSKLSCVCWNNYIKNYLASADY--DGVVKLWDACTGQTVSH-YIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL  898 (1092)
Q Consensus       823 -~~~~h~~~V~~v~~sp~~~~~LaSgs~--DgtV~IWD~~tg~~i~~-l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~i  898 (1092)
                       ....+...-..+.|+|+ +++|++++.  ++.|.++| .+++.+.. +.. ..   ++.+.|.....+++.+.||.+.+
T Consensus       118 ~~~~~~g~~p~~~~~spD-G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~  191 (373)
T 2mad_H          118 APRFDVGPYSWMNANTPN-NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAK  191 (373)
T ss_pred             ccccccCCCccceEECCC-CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEE
Confidence             00001123357899998 777777764  58899999 99988877 542 22   24555645567788889999999


Q ss_pred             EecCCCceeeeEe------cCCc-eEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc-eEEecC----------CCCCe
Q 001366          899 WNINEKNSLATIK------NIAN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP-WCVLAG----------HEKAV  960 (1092)
Q Consensus       899 WDl~~~~~l~~l~------~~~~-V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~-~~~l~~----------H~~~V  960 (1092)
                      ||. +++.+....      .... .....+.+++..++++ +..+.+.+.|+...... +..+.-          .....
T Consensus       192 vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~  269 (373)
T 2mad_H          192 TDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW  269 (373)
T ss_pred             EEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCce
Confidence            999 887764332      1111 1234566666544444 46889999999754321 111110          01223


Q ss_pred             EEEEEc-CCCEEEEEEC----------CCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC-EEEEEe-cC
Q 001366          961 SYVKFL-DSGTLVTAST----------DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG-YIACGS-ES 1027 (1092)
Q Consensus       961 ~~v~fs-~~~~L~Sgs~----------Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs-~D 1027 (1092)
                      ..+.++ +++.++.+..          .+.|.++|+.        +.+.+.++.. ......++|+|||+ .++++. .+
T Consensus       270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~--------t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~  340 (373)
T 2mad_H          270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL--------VGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGT  340 (373)
T ss_pred             EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC--------CCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCC
Confidence            446677 5566665543          3579999998        3455566643 23578999999999 677766 58


Q ss_pred             CcEEEEeCCCCCceee
Q 001366         1028 NEVYAYHRSLPMPITS 1043 (1092)
Q Consensus      1028 g~I~Iwd~~~~~~i~~ 1043 (1092)
                      +.|.|||..+++.+.+
T Consensus       341 ~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          341 EVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CeEEEEECCCCCEEee
Confidence            9999999999998877

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.12  E-value=3.8e-08  Score=109.35  Aligned_cols=226  Identities=10%  Similarity=0.002  Sum_probs=151.8

Q ss_pred             CCCEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEE
Q 001366          779 ANVICSISFDRDE-DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWD  857 (1092)
Q Consensus       779 ~~~V~sl~fspdg-~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD  857 (1092)
                      ....-+..|++++ .++++...++.|..||..+..   .      ........+.+++++++ ++++++ . ++.|.+||
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---~------~~~~~~~~~~~i~~~~d-G~l~v~-~-~~~l~~~d   79 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---V------QRVTMDAPVSSVALRQS-GGYVAT-I-GTKFCALN   79 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---E------EEEECSSCEEEEEEBTT-SSEEEE-E-TTEEEEEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCc---E------EEEeCCCceEEEEECCC-CCEEEE-E-CCeEEEEE
Confidence            3345678899964 466666678899999986521   1      11234567999999998 665554 3 57899999


Q ss_pred             CCCCceEEEeec----cCccEEEEEEecCCCCEEEEEeCC---------CcEEEEecCC-CceeeeEecCCceEEEEEcc
Q 001366          858 ACTGQTVSHYIE----HEKRAWSVDFSQVHPTKLASGSDD---------CSVKLWNINE-KNSLATIKNIANVCCVQFSA  923 (1092)
Q Consensus       858 ~~tg~~i~~l~~----h~~~V~sv~fsp~~~~~laSgs~D---------g~I~iWDl~~-~~~l~~l~~~~~V~sl~fsp  923 (1092)
                      ..+++.......    ....+.++++.| ++.++++...+         ....||.+.. ++...........+.++|+|
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp  158 (297)
T 3g4e_A           80 WKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL  158 (297)
T ss_dssp             TTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT
T ss_pred             CCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC
Confidence            988764332221    124588999999 78876654322         3345665543 33333333445678999999


Q ss_pred             CCCeEEEEEECCCeEEEEEcC--CCCc----ceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCC
Q 001366          924 HSSHLLAFGSADYRTYCYDLR--NARA----PWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTN  996 (1092)
Q Consensus       924 ~~~~~latgs~Dg~I~vwDlr--~~~~----~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~  996 (1092)
                      ++..++++.+.++.|.+||+.  ++..    .+..+..+...+..+++. ++...++....+.|.+||..        ++
T Consensus       159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~--------tG  230 (297)
T 3g4e_A          159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV--------TG  230 (297)
T ss_dssp             TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT--------TC
T ss_pred             CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC--------Cc
Confidence            997666777788999999973  3321    122233344567889997 55556666677889999987        35


Q ss_pred             ceeEEEcCCCCCeEEEEEe-cCCCEEEEEe
Q 001366          997 ACSLTFSGHTNEKNFVGLS-TADGYIACGS 1025 (1092)
Q Consensus       997 ~~~~~l~~h~~~V~~v~~s-pdg~~lasgs 1025 (1092)
                      ..+..+..+...+++++|. |+++.|..++
T Consensus       231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          231 KRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             CEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             eEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            6677777777789999998 8877554444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.10  E-value=5.2e-08  Score=109.93  Aligned_cols=221  Identities=9%  Similarity=-0.030  Sum_probs=144.1

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 001366          782 ICSISFDRDED-HFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT  860 (1092)
Q Consensus       782 V~sl~fspdg~-~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t  860 (1092)
                      ..+..|+|++. ++++...++.|.+|+.....   .      ........+.+++|+++ +.+++++ .+ .|.+||..+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---~------~~~~~~~~v~~i~~~~d-g~l~v~~-~~-gl~~~d~~~  118 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGR---K------TVHALPFMGSALAKISD-SKQLIAS-DD-GLFLRDTAT  118 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE---E------EEEECSSCEEEEEEEET-TEEEEEE-TT-EEEEEETTT
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc---E------EEEECCCcceEEEEeCC-CeEEEEE-CC-CEEEEECCC
Confidence            45678999754 56666678899999976421   1      11123467999999997 6666654 44 499999988


Q ss_pred             CceEEEeec---c-CccEEEEEEecCCCCEEEEEeC------CCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEE
Q 001366          861 GQTVSHYIE---H-EKRAWSVDFSQVHPTKLASGSD------DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLA  930 (1092)
Q Consensus       861 g~~i~~l~~---h-~~~V~sv~fsp~~~~~laSgs~------Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~la  930 (1092)
                      ++.......   . ...+.++.++| ++.++++...      .+.|..+|  +++...........+.++|+|++..+++
T Consensus       119 g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          119 GVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             CcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEE
Confidence            875432221   1 24689999999 7887665542      23454555  4443332233345789999999975556


Q ss_pred             EEECCCeEEEEEcC--CC-Cc----ceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEE
Q 001366          931 FGSADYRTYCYDLR--NA-RA----PWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTF 1002 (1092)
Q Consensus       931 tgs~Dg~I~vwDlr--~~-~~----~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l 1002 (1092)
                      +.+.++.|.+||+.  ++ ..    .+..+......+..+.+. ++..+++...++.|.+||..         +..+..+
T Consensus       196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~---------g~~~~~i  266 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD---------GNHIARY  266 (326)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT---------CCEEEEE
T ss_pred             EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC---------CCEEEEE
Confidence            66678899999986  44 21    122233344567788887 45555555567899999874         2345566


Q ss_pred             cCCCCCeEEEEEe-cCCCEEEEEec
Q 001366         1003 SGHTNEKNFVGLS-TADGYIACGSE 1026 (1092)
Q Consensus      1003 ~~h~~~V~~v~~s-pdg~~lasgs~ 1026 (1092)
                      ..+...+.+++|+ ++++.|+.++.
T Consensus       267 ~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          267 EVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             ECCCCCcEEEEEecCCCCEEEEEec
Confidence            6666779999998 88876655443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.09  E-value=7.6e-09  Score=120.80  Aligned_cols=255  Identities=11%  Similarity=0.049  Sum_probs=169.3

Q ss_pred             CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEE----------CCCcEEEEECCCCceEEEeecc
Q 001366          801 KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD----------YDGVVKLWDACTGQTVSHYIEH  870 (1092)
Q Consensus       801 ~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs----------~DgtV~IWD~~tg~~i~~l~~h  870 (1092)
                      +.|.++|..+..   +...   +.. ...+  .+.++|+ +++|+++.          .++.|.++|..+++.+..+.--
T Consensus        99 ~~VsVID~~t~~---vv~~---I~v-G~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~  168 (426)
T 3c75_H           99 TQQFVIDGSTGR---ILGM---TDG-GFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELP  168 (426)
T ss_dssp             EEEEEEETTTTE---EEEE---EEE-CSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred             CeEEEEECCCCE---EEEE---EEC-CCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECC
Confidence            689999987521   1111   111 2334  8999999 55555554          4679999999999988877521


Q ss_pred             -------CccEEEEEEecCCCCEEEEEeC--CCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEE
Q 001366          871 -------EKRAWSVDFSQVHPTKLASGSD--DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCY  941 (1092)
Q Consensus       871 -------~~~V~sv~fsp~~~~~laSgs~--Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vw  941 (1092)
                             ......+.|+| ++++++.+..  +++|.+.|+.+++.+.++.....   ....|++...+++.+.||.+.+.
T Consensus       169 g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V  244 (426)
T 3c75_H          169 DAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARV  244 (426)
T ss_dssp             TCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEE
T ss_pred             CccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEE
Confidence                   23346789999 8888888764  68899999999999988886442   34456655677778889998888


Q ss_pred             EcCCCCcceEE----ecCCCCCe-EEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC----------C
Q 001366          942 DLRNARAPWCV----LAGHEKAV-SYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG----------H 1005 (1092)
Q Consensus       942 Dlr~~~~~~~~----l~~H~~~V-~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~----------h 1005 (1092)
                      |+.+.+. ...    +.....++ ..+.|. ++..++..+..+.|.+.|+......      .+..+.-          .
T Consensus       245 ~~~~~~v-~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~------v~~~~~~~~~~~i~~g~~  317 (426)
T 3c75_H          245 DFADGET-KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT------FRAPIEALTEAERADDWR  317 (426)
T ss_dssp             ECCTTCC-EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE------ECCCEESSCTTTGGGTEE
T ss_pred             ECCCCcE-EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE------Eeeeeeeccccccccccc
Confidence            8844432 211    11111111 123455 4566666677889999998632100      0000000          0


Q ss_pred             CCCeEEEEEecCCCEEEEEec----------CCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCC
Q 001366         1006 TNEKNFVGLSTADGYIACGSE----------SNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD 1075 (1092)
Q Consensus      1006 ~~~V~~v~~spdg~~lasgs~----------Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~ 1075 (1092)
                      ......++++|+++.+.....          ++.|.++|..+.+.+.++..+               ...++|+|+||++
T Consensus       318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---------------~~P~gia~spDg~  382 (426)
T 3c75_H          318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---------------HEIDSINVSQDAE  382 (426)
T ss_dssp             ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---------------EEECEEEECCSSS
T ss_pred             cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---------------CCcCeEEEccCCC
Confidence            111223689999886554431          357999999999999988753               2478999999999


Q ss_pred             -EEEEEe-cCCeEEEEEc
Q 001366         1076 -MVVAAN-SSGCIKVLQM 1091 (1092)
Q Consensus      1076 -~Lasgs-~DG~V~vW~l 1091 (1092)
                       .|++++ .++.|.|+|+
T Consensus       383 ~~lyv~n~~s~~VsVID~  400 (426)
T 3c75_H          383 PLLYALSAGTQTLHIYDA  400 (426)
T ss_dssp             CEEEEEETTTTEEEEEET
T ss_pred             EEEEEEcCCCCeEEEEEC
Confidence             899998 5899999986

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.07  E-value=5.7e-08  Score=107.87  Aligned_cols=226  Identities=11%  Similarity=0.024  Sum_probs=151.7

Q ss_pred             CeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeee
Q 001366          830 KLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLAT  909 (1092)
Q Consensus       830 ~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~  909 (1092)
                      -.-+..|+++.+.++++...++.|..||..+++. ..+. +...+.++++++ ++.++++ . ++.|.+||..+++....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence            4468899997567777777889999999988765 3332 456799999999 7775554 4 56799999987764433


Q ss_pred             Eec-----CCceEEEEEccCCCeEEEEEEC-----------CCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEE-
Q 001366          910 IKN-----IANVCCVQFSAHSSHLLAFGSA-----------DYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTL-  971 (1092)
Q Consensus       910 l~~-----~~~V~sl~fsp~~~~~latgs~-----------Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L-  971 (1092)
                      ...     ...++.++++|+|. ++++...           .+.|+.+|.. + . ...+..+......++|+ +++.| 
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g-~-~~~~~~~~~~pngi~~spdg~~ly  164 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-H-H-VKKYFDQVDISNGLDWSLDHKIFY  164 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-S-C-EEEEEEEESBEEEEEECTTSCEEE
T ss_pred             EecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-C-C-EEEEeeccccccceEEcCCCCEEE
Confidence            222     23488999999996 4443322           2345555543 2 2 22233334456889998 55555 


Q ss_pred             EEEECCCeEEEEEcC--CCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeecccc
Q 001366          972 VTASTDNKLKLWDLK--RTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSI 1049 (1092)
Q Consensus       972 ~Sgs~Dg~I~vWDl~--~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~ 1049 (1092)
                      ++.+.++.|.+||+.  ++..   ........+..+......++++++|.+.++...++.|.+|+..+++.+..+..   
T Consensus       165 v~~~~~~~i~~~~~d~~~G~~---~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~---  238 (297)
T 3g4e_A          165 YIDSLSYSVDAFDYDLQTGQI---SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL---  238 (297)
T ss_dssp             EEEGGGTEEEEEEECTTTCCE---EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC---
T ss_pred             EecCCCCcEEEEeccCCCCcc---cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC---
Confidence            455567899999984  1110   00112223333445678899999999888888888999999988888777653   


Q ss_pred             CCCCCccccCCCCCCEEEEEEe-CCCCEEEEEe
Q 001366         1050 DPISGKETDDDNGLFVSSVCWR-RRSDMVVAAN 1081 (1092)
Q Consensus      1050 ~~i~~~~~~~~h~~~V~sva~s-pd~~~Lasgs 1081 (1092)
                                 +...+++++|. |+++.|..++
T Consensus       239 -----------p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          239 -----------PVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             -----------SSSBEEEEEEESGGGCEEEEEE
T ss_pred             -----------CCCCceEEEEeCCCCCEEEEEc
Confidence                       23468999999 8887765544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.07  E-value=1.2e-08  Score=127.43  Aligned_cols=239  Identities=13%  Similarity=0.060  Sum_probs=154.7

Q ss_pred             CCCCeEEEEEecCCCCEEEE-EE----CCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCc------
Q 001366          827 NRSKLSCVCWNNYIKNYLAS-AD----YDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCS------  895 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaS-gs----~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~------  895 (1092)
                      +...+..++|+|+ +++||- .+    .+.+|++||+.+++.+... .+.....+++|+  |++.|+.++.|..      
T Consensus       127 ~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          127 GTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL--GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             SCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE--TTTEEEEEESSCCC-----
T ss_pred             CcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe--CCCEEEEEEecCccccccc
Confidence            3456888999998 776663 32    2357999999999865431 111123578898  6677777777743      


Q ss_pred             -------EEEEecCCCce--eeeEec----CCceEEEEEccCCCeEEEEEEC---CCeEEEEEcCCCCcceEEecCCCCC
Q 001366          896 -------VKLWNINEKNS--LATIKN----IANVCCVQFSAHSSHLLAFGSA---DYRTYCYDLRNARAPWCVLAGHEKA  959 (1092)
Q Consensus       896 -------I~iWDl~~~~~--l~~l~~----~~~V~sl~fsp~~~~~latgs~---Dg~I~vwDlr~~~~~~~~l~~H~~~  959 (1092)
                             |++|++.++..  ...+..    ...+.++.|+|+|..++++.+.   +..|+++|+.++......+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                   99999987653  223332    2347889999999865555543   3589999998765445566666666


Q ss_pred             eEEEEEcCCCEEE-EEECC---CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEec-CC--cEEE
Q 001366          960 VSYVKFLDSGTLV-TASTD---NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE-SN--EVYA 1032 (1092)
Q Consensus       960 V~~v~fs~~~~L~-Sgs~D---g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg--~I~I 1032 (1092)
                      ......++++.|+ ++..+   +.|.+||+.+...      .....+..|...+.  .|++++++|+.... ++  .|++
T Consensus       283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP------AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQ  354 (693)
T ss_dssp             CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG------GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred             eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc------cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence            6665334566554 44443   5799999884321      11345666666665  89999998876664 43  6888


Q ss_pred             EeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecC----CeEEEEEc
Q 001366         1033 YHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSS----GCIKVLQM 1091 (1092)
Q Consensus      1033 wd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~D----G~V~vW~l 1091 (1092)
                      |+...+ ....+.+             .....+..+.+++++..|+....+    +.|..|++
T Consensus       355 ~d~~g~-~~~~l~~-------------p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          355 FDYEGK-RVREVAL-------------PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             ECTTSC-EEEEECC-------------SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EECCCC-eeEEeec-------------CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            987633 3333322             123457778888888766655444    67777764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.05  E-value=8.6e-09  Score=128.84  Aligned_cols=240  Identities=16%  Similarity=0.196  Sum_probs=153.7

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC
Q 001366          777 NSANVICSISFDRDEDHFAAAG-----VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG  851 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg-----~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg  851 (1092)
                      +|...+.+++|||||++||-+.     ...+|+|||+.+...  ..    ...  +..+...++|+ | ++.|+.++.|.
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~--~~----~~~--~~~k~~~~~Ws-D-g~~l~y~~~~~  195 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP--LE----TPL--KDVKFSGISWL-G-NEGFFYSSYDK  195 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE--EE----EEE--EEEESCCCEEE-T-TTEEEEEESSC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC--Cc----ccc--CCceeccEEEe-C-CCEEEEEEecC
Confidence            3556788899999999998543     235799999876321  11    111  11123567899 7 77788887775


Q ss_pred             c-------------EEEEECCCCce--EEEe--ec-cCccEEEEEEecCCCCEEEE-EeC---CCcEEEEecCCCc-eee
Q 001366          852 V-------------VKLWDACTGQT--VSHY--IE-HEKRAWSVDFSQVHPTKLAS-GSD---DCSVKLWNINEKN-SLA  908 (1092)
Q Consensus       852 t-------------V~IWD~~tg~~--i~~l--~~-h~~~V~sv~fsp~~~~~laS-gs~---Dg~I~iWDl~~~~-~l~  908 (1092)
                      .             |++|++.+++.  ...+  .. |...+.++.|+| +++.|+. .+.   +..|.+||+.++. ...
T Consensus       196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred             cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence            4             99999987652  3333  33 455578999999 7776643 332   3589999998764 344


Q ss_pred             eEe-cCCceEEEEEccCCCeEEEEEECC---CeEEEEEcCCCCc-ceEEecCCCCCeEEEEEc-CCCEEEEEE-CCC--e
Q 001366          909 TIK-NIANVCCVQFSAHSSHLLAFGSAD---YRTYCYDLRNARA-PWCVLAGHEKAVSYVKFL-DSGTLVTAS-TDN--K  979 (1092)
Q Consensus       909 ~l~-~~~~V~sl~fsp~~~~~latgs~D---g~I~vwDlr~~~~-~~~~l~~H~~~V~~v~fs-~~~~L~Sgs-~Dg--~  979 (1092)
                      .+. ........ |++++..+++.+..+   +.|..+|+.++.. .+..+..|...+.  .|+ .++.|+... .++  .
T Consensus       275 ~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~  351 (693)
T 3iuj_A          275 TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR  351 (693)
T ss_dssp             EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred             EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence            444 33334444 677776666666554   6899999987643 2345556665555  555 566666555 454  6


Q ss_pred             EEEEEcCCCCCCCCCCCceeEEEc-CCCCCeEEEEEecCCCEEEEEecC----CcEEEEeCCCCC
Q 001366          980 LKLWDLKRTSHTGPSTNACSLTFS-GHTNEKNFVGLSTADGYIACGSES----NEVYAYHRSLPM 1039 (1092)
Q Consensus       980 I~vWDl~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~D----g~I~Iwd~~~~~ 1039 (1092)
                      |.+||+..         .....+. .....+..++++++++.|+....+    ++|+.||+.+++
T Consensus       352 l~~~d~~g---------~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          352 VEQFDYEG---------KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEECTTS---------CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEECCC---------CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            88888762         2233333 234456677788888766555444    789999987765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.04  E-value=6.3e-09  Score=118.34  Aligned_cols=270  Identities=7%  Similarity=0.007  Sum_probs=168.0

Q ss_pred             CCEEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCCCCcccccce---eeecCCCCeEEEEEecCCCCEEEEEEC-----
Q 001366          780 NVICSISFDRDEDHFAAAG--VSKKIKIFEFNALFNDSVDVYYPA---VEMSNRSKLSCVCWNNYIKNYLASADY-----  849 (1092)
Q Consensus       780 ~~V~sl~fspdg~~latgg--~D~~I~Iwd~~~~~~~~~~~~~~~---~~~~h~~~V~~v~~sp~~~~~LaSgs~-----  849 (1092)
                      ..++.|+++++|+++++..  .++.++||.+...   .. ..++.   ....+-..+.+++++++ +.++++-..     
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g---~~-~~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD---GL-IPFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKS   91 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT---EE-EESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC---Ce-ecCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCC
Confidence            5788999999999999864  2343667766421   11 11111   11234567999999997 665554433     


Q ss_pred             CCcEEEEECCCCceEEEeecc------CccEEEEEEecCCCCEEEEEe---CCCcEEEEecCCCceeeeEecCCce--EE
Q 001366          850 DGVVKLWDACTGQTVSHYIEH------EKRAWSVDFSQVHPTKLASGS---DDCSVKLWNINEKNSLATIKNIANV--CC  918 (1092)
Q Consensus       850 DgtV~IWD~~tg~~i~~l~~h------~~~V~sv~fsp~~~~~laSgs---~Dg~I~iWDl~~~~~l~~l~~~~~V--~s  918 (1092)
                      ++.|.+||+.+++.+..+...      ...+..+++.+.++..+++.+   .++.|.+||+.+++....+..+...  ..
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            579999999999877766532      234689999974455566665   6889999999988766655421110  01


Q ss_pred             EEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCC-eEEEEEcCCCCCCCCCCC
Q 001366          919 VQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDN-KLKLWDLKRTSHTGPSTN  996 (1092)
Q Consensus       919 l~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg-~I~vWDl~~~~~~~~~~~  996 (1092)
                      ..+.+++ ..+.+.+.++.++.|.               ..+..|+|+ +++.|+.+..++ .|..++............
T Consensus       172 ~~~~~~g-~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~  235 (343)
T 2qe8_A          172 IDLVIDG-VPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA  235 (343)
T ss_dssp             CCCEETT-EECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred             cceeECC-EEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence            3444555 3566666777665542               135779998 556788777766 454444321000000000


Q ss_pred             cee--EEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCC
Q 001366          997 ACS--LTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRS 1074 (1092)
Q Consensus       997 ~~~--~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~ 1074 (1092)
                      ...  ....++......++++++|.++++...++.|.+|+...++......             ..+...+.+|+|.+++
T Consensus       236 ~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-------------~~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          236 ELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-------------DEKLSWTDSFNFGSDG  302 (343)
T ss_dssp             HHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-------------CGGGSCEEEEEECTTS
T ss_pred             hhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-------------CCceecCCeeEECCCC
Confidence            000  0122334455679999999999999999999999984454222111             0123468999999999


Q ss_pred             CEEEEEecC
Q 001366         1075 DMVVAANSS 1083 (1092)
Q Consensus      1075 ~~Lasgs~D 1083 (1092)
                      .++++.+..
T Consensus       303 ~l~v~~~~~  311 (343)
T 2qe8_A          303 YLYFDCNQL  311 (343)
T ss_dssp             CEEEEECCG
T ss_pred             cEEEEeCcc
Confidence            988887744

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.03  E-value=5.3e-08  Score=111.83  Aligned_cols=265  Identities=12%  Similarity=0.033  Sum_probs=171.8

Q ss_pred             CCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCCCCcccccce
Q 001366          753 DGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAG----------VSKKIKIFEFNALFNDSVDVYYPA  822 (1092)
Q Consensus       753 D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg----------~D~~I~Iwd~~~~~~~~~~~~~~~  822 (1092)
                      ++.+.+.+...+++.+.+..+     ..+ . ++++|||+++.+++          .++.|.+||..+..   +..   .
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG-----~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~---v~~---~  124 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGG-----FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL---PTA---D  124 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEEC-----SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC---EEE---E
T ss_pred             CCEEEEEECCCCeEEEEEECC-----CCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe---EEE---E
Confidence            457778888888888877653     223 3 89999999877665          36789999987621   111   1


Q ss_pred             eeecC------CCCeEEEEEecCCCCEEEEEEC--CCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCC
Q 001366          823 VEMSN------RSKLSCVCWNNYIKNYLASADY--DGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC  894 (1092)
Q Consensus       823 ~~~~h------~~~V~~v~~sp~~~~~LaSgs~--DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg  894 (1092)
                      +..+.      ...-..+.++|+ +++++++..  +++|.++|+.+++.+.++..-.  +  ..+.|.....+++.+.||
T Consensus       125 I~v~~g~r~~~g~~P~~~a~spD-Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG  199 (386)
T 3sjl_D          125 IELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C--YHIFPTAPDTFFMHCRDG  199 (386)
T ss_dssp             EEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTS
T ss_pred             EECCCccccccCCCCceEEEcCC-CCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c--ceeecCCCceeEEECCCC
Confidence            11111      123457899998 777777664  6899999999999988885322  1  223353566788889999


Q ss_pred             cEEEEecCC-CceeeeEec-----CCce-EEEEEc-cCCCeEEEEEECCCeEEEEEcCCCCc-ceEEec---------C-
Q 001366          895 SVKLWNINE-KNSLATIKN-----IANV-CCVQFS-AHSSHLLAFGSADYRTYCYDLRNARA-PWCVLA---------G-  955 (1092)
Q Consensus       895 ~I~iWDl~~-~~~l~~l~~-----~~~V-~sl~fs-p~~~~~latgs~Dg~I~vwDlr~~~~-~~~~l~---------~-  955 (1092)
                      ++.+.++.+ ++...+...     ...+ ....|. ++|  .++..+.+|.|+++|+.+... ......         + 
T Consensus       200 ~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG--~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~  277 (386)
T 3sjl_D          200 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG--RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW  277 (386)
T ss_dssp             CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT--EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred             CEEEEECCCCCeEEEeecceeccccccccccceeEcCCC--cEEEEeCCCEEEEEECCCCcceeecceeccccccccccc
Confidence            999999986 554322111     1122 124564 566  344466789999999976532 111110         0 


Q ss_pred             CCCCeEEEEEc-CCCEEEEEEC----------CCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC-EEEE
Q 001366          956 HEKAVSYVKFL-DSGTLVTAST----------DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG-YIAC 1023 (1092)
Q Consensus       956 H~~~V~~v~fs-~~~~L~Sgs~----------Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~las 1023 (1092)
                      .......++++ +++.++....          .+.|.+.|+.        +.+.+..+.. ...++.+++++|++ +|++
T Consensus       278 ~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~--------t~kv~~~i~v-g~~~~~lavs~D~~~~ly~  348 (386)
T 3sjl_D          278 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK--------TGERLAKFEM-GHEIDSINVSQDEKPLLYA  348 (386)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT--------TCCEEEEEEE-EEEECEEEECSSSSCEEEE
T ss_pred             cCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC--------CCeEEEEEEC-CCCcceEEECCCCCeEEEE
Confidence            11122345566 5666665442          2579999998        3455665542 13678999999997 5555


Q ss_pred             -EecCCcEEEEeCCCCCceeeeec
Q 001366         1024 -GSESNEVYAYHRSLPMPITSYKF 1046 (1092)
Q Consensus      1024 -gs~Dg~I~Iwd~~~~~~i~~~~~ 1046 (1092)
                       ...++.|.|+|..+++.+.++..
T Consensus       349 tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          349 LSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECC
T ss_pred             EcCCCCeEEEEECCCCcEEEEecC
Confidence             45689999999999999988863

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.01  E-value=3e-07  Score=103.70  Aligned_cols=223  Identities=9%  Similarity=-0.037  Sum_probs=147.1

Q ss_pred             eEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeE
Q 001366          831 LSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATI  910 (1092)
Q Consensus       831 V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l  910 (1092)
                      ..+..|+|+.+.++++...++.|..||..+++.. .+. +...+.++.|.+ ++.++++. .+ .|.+||..+++.....
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            4578899975667777778899999999877543 333 356799999999 77766654 44 4999999887654322


Q ss_pred             ec-----CCceEEEEEccCCCeEEEEEEC------CCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEE-EEECC
Q 001366          911 KN-----IANVCCVQFSAHSSHLLAFGSA------DYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLV-TASTD  977 (1092)
Q Consensus       911 ~~-----~~~V~sl~fsp~~~~~latgs~------Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~-Sgs~D  977 (1092)
                      ..     ...+++++++|+|. ++++...      .+.|+.+|  +++  +..+..+......++|+ +++.|+ +.+.+
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             eCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            21     13588999999996 4444332      35677777  332  22222333457789998 555554 44557


Q ss_pred             CeEEEEEcC--CC-CCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCC
Q 001366          978 NKLKLWDLK--RT-SHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISG 1054 (1092)
Q Consensus       978 g~I~vWDl~--~~-~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~ 1054 (1092)
                      +.|.+||+.  ++ ...   .......+.........++++++|.++++...++.|.+|+. .++.+..+..        
T Consensus       201 ~~I~~~d~~~~~Gl~~~---~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~--------  268 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTG---KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV--------  268 (326)
T ss_dssp             CEEEEEEBCTTTCCBSS---CCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC--------
T ss_pred             CEEEEEEcccccCCccc---CceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC--------
Confidence            899999986  22 110   11122233333445678999999998887777788999987 4655554432        


Q ss_pred             ccccCCCCCCEEEEEEe-CCCCEEEEEe
Q 001366         1055 KETDDDNGLFVSSVCWR-RRSDMVVAAN 1081 (1092)
Q Consensus      1055 ~~~~~~h~~~V~sva~s-pd~~~Lasgs 1081 (1092)
                            +...+.+++|+ +++..|+.++
T Consensus       269 ------~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          269 ------PGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             ------SCSBEEEEEEESTTSCEEEEEE
T ss_pred             ------CCCCcEEEEEecCCCCEEEEEe
Confidence                  23468999999 8887765444

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.01  E-value=2.7e-11  Score=138.73  Aligned_cols=68  Identities=10%  Similarity=0.014  Sum_probs=57.1

Q ss_pred             CcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC----------cEEEecc
Q 001366          304 LRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN----------QVKYIGP  373 (1092)
Q Consensus       304 ~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~----------~vkl~Df  373 (1092)
                      -++|||++|++|.+++.       ..+...++.||+.+|.|||++|||||||||.|||+++++          .+.+|||
T Consensus       187 ~LVME~i~G~~L~~l~~-------~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~  259 (397)
T 4gyi_A          187 TIVMSLVDALPMRQVSS-------VPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXF  259 (397)
T ss_dssp             EEEEECCSCEEGGGCCC-------CSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCC
T ss_pred             eEEEEecCCccHhhhcc-------cHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcccccccccceEEEEe
Confidence            35899999999976532       124567899999999999999999999999999999877          3889999


Q ss_pred             ccccc
Q 001366          374 IIQKE  378 (1092)
Q Consensus       374 g~~~~  378 (1092)
                      +.+-.
T Consensus       260 ~Q~V~  264 (397)
T 4gyi_A          260 PQMVS  264 (397)
T ss_dssp             TTCEE
T ss_pred             CCccc
Confidence            86654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.97  E-value=8.5e-08  Score=106.82  Aligned_cols=225  Identities=9%  Similarity=-0.021  Sum_probs=146.6

Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          778 SANVICSISFDRDED-HFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       778 h~~~V~sl~fspdg~-~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      ......+..|+|+|+ +++++..++.|..|+....    .     .....+...+.+++|+++ ++++++...++.|.+|
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~----~-----~~~~~~~~~~~gl~~d~d-G~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT----V-----DVLLDATAFTNGNAVDAQ-QRLVHCEHGRRAITRS  112 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC----E-----EEEEESCSCEEEEEECTT-SCEEEEETTTTEEEEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC----E-----EEEeCCCCccceeeECCC-CCEEEEECCCCEEEEE
Confidence            344567789999998 5667767889999986421    1     112234567899999997 7766665556889999


Q ss_pred             ECCCCceEEEeecc-----CccEEEEEEecCCCCEEEE----EeC-------------CCcEEEEecCCCceeeeEecCC
Q 001366          857 DACTGQTVSHYIEH-----EKRAWSVDFSQVHPTKLAS----GSD-------------DCSVKLWNINEKNSLATIKNIA  914 (1092)
Q Consensus       857 D~~tg~~i~~l~~h-----~~~V~sv~fsp~~~~~laS----gs~-------------Dg~I~iWDl~~~~~l~~l~~~~  914 (1092)
                      |.. ++.. .+..+     ...+.++.+.+ ++.+++|    |..             .+.|..||..+++..... ...
T Consensus       113 ~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~  188 (305)
T 3dr2_A          113 DAD-GQAH-LLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLD  188 (305)
T ss_dssp             CTT-SCEE-EEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EES
T ss_pred             CCC-CCEE-EEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCC
Confidence            985 5532 22211     13467899999 8888876    332             256777887767654433 445


Q ss_pred             ceEEEEEccCCCeEEEEEECC------CeEEEEEcCCCCcc-eEE-ecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcC
Q 001366          915 NVCCVQFSAHSSHLLAFGSAD------YRTYCYDLRNARAP-WCV-LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLK  986 (1092)
Q Consensus       915 ~V~sl~fsp~~~~~latgs~D------g~I~vwDlr~~~~~-~~~-l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~  986 (1092)
                      ..+.++|+|++. .|+++...      +.|++||+...... ... .......+..+++.+.+.|..++.+ .|.+||..
T Consensus       189 ~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~  266 (305)
T 3dr2_A          189 HPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSD  266 (305)
T ss_dssp             SEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECTT
T ss_pred             CCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECCC
Confidence            678899999996 44444443      78999998754310 011 1112334556788744446656554 49999875


Q ss_pred             CCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCC
Q 001366          987 RTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESN 1028 (1092)
Q Consensus       987 ~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg 1028 (1092)
                               +..+..+..+. .+..++|+++++.|..++.++
T Consensus       267 ---------g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          267 ---------GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             ---------SCEEEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             ---------CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence                     34455555444 578899999988888777654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.92  E-value=2.2e-07  Score=103.49  Aligned_cols=230  Identities=8%  Similarity=0.015  Sum_probs=151.4

Q ss_pred             CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce
Q 001366          827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS  906 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~  906 (1092)
                      ......+..|++++..++++...++.|..|+. +++ ...+..+...+.++++.+ +++++++...++.|.+||.. ++.
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~  118 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQA  118 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCE
Confidence            34556789999983337777778899999998 454 445555677789999999 78866665566889999986 543


Q ss_pred             eeeEec-----CCceEEEEEccCCCeEEEE----EEC-------------CCeEEEEEcCCCCcceEEecCCCCCeEEEE
Q 001366          907 LATIKN-----IANVCCVQFSAHSSHLLAF----GSA-------------DYRTYCYDLRNARAPWCVLAGHEKAVSYVK  964 (1092)
Q Consensus       907 l~~l~~-----~~~V~sl~fsp~~~~~lat----gs~-------------Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~  964 (1092)
                      ......     ...++.++++|+|. ++++    |..             .+.|+.||..+++..  .+. +......++
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~--~~~-~~~~p~gl~  194 (305)
T 3dr2_A          119 HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ--RMA-DLDHPNGLA  194 (305)
T ss_dssp             EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE--EEE-EESSEEEEE
T ss_pred             EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE--EEe-cCCCCcceE
Confidence            222211     13467899999996 5554    332             357888887655432  222 344578899


Q ss_pred             Ec-CCCEEEEEECC------CeEEEEEcCCCCCCCCCCCceeEEE-cCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCC
Q 001366          965 FL-DSGTLVTASTD------NKLKLWDLKRTSHTGPSTNACSLTF-SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       965 fs-~~~~L~Sgs~D------g~I~vWDl~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                      |+ ++..|+.+...      +.|.+||+.....      .....+ .........++++++|.+.++. .+ .|.+|+. 
T Consensus       195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l------~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-  265 (305)
T 3dr2_A          195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL------HDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-  265 (305)
T ss_dssp             ECTTSSEEEEEECCC---CCCEEEEEEEETTEE------EEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECT-
T ss_pred             EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc------cCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECC-
Confidence            98 55667777665      7899999873210      001111 1122334568899999855544 44 4999987 


Q ss_pred             CCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEE
Q 001366         1037 LPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088 (1092)
Q Consensus      1037 ~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~v 1088 (1092)
                      .++.+..+..               ...+.+++|.|+++.|..++.++..++
T Consensus       266 ~g~~~~~~~~---------------~~~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          266 DGQLLGHIPT---------------PGTASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             TSCEEEEEEC---------------SSCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCCEEEEEEC---------------CCceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            4665555542               113788999999998888877655444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.87  E-value=5.7e-08  Score=111.48  Aligned_cols=248  Identities=10%  Similarity=-0.040  Sum_probs=159.3

Q ss_pred             cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEE----------CCCcEEEEECCCCceEEEeecc-
Q 001366          802 KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD----------YDGVVKLWDACTGQTVSHYIEH-  870 (1092)
Q Consensus       802 ~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs----------~DgtV~IWD~~tg~~i~~l~~h-  870 (1092)
                      +|.++|..+..   +..   .+..+ ..+  .+.++|+ +..++++.          .+++|.+||..+++.+.++... 
T Consensus        47 ~vsvID~~t~~---v~~---~i~vG-~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~  116 (368)
T 1mda_H           47 ENWVSCAGCGV---TLG---HSLGA-FLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD  116 (368)
T ss_dssp             EEEEEETTTTE---EEE---EEEEC-TTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred             eEEEEECCCCe---EEE---EEeCC-CCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence            78899976521   111   11122 344  7999999 55555554          3789999999999999988643 


Q ss_pred             ------CccEEEEEEecCCCCEEEEEeC--CCcEEE--EecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEE
Q 001366          871 ------EKRAWSVDFSQVHPTKLASGSD--DCSVKL--WNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYC  940 (1092)
Q Consensus       871 ------~~~V~sv~fsp~~~~~laSgs~--Dg~I~i--WDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~v  940 (1092)
                            ......+.++| ++++++.+..  +..|.+  +|+.+   +.++.....   +.+.|++...+++.+.|+.+.+
T Consensus       117 ~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          117 APRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             SCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEE
T ss_pred             ccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEE
Confidence                  12356899999 8888887764  467888  99987   555553322   3345666667777788999888


Q ss_pred             EEcCC----CCcceE----EecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC--------
Q 001366          941 YDLRN----ARAPWC----VLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG-------- 1004 (1092)
Q Consensus       941 wDlr~----~~~~~~----~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~-------- 1004 (1092)
                      .|+.+    ......    .+.-...+.   .+.+++.++..+. +.|.+.|+.....      ..+..+.-        
T Consensus       190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~------~v~~~~~~~~~~~~~~  259 (368)
T 1mda_H          190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA------TMKAAIDGNESGRKAD  259 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC------EEECCCCSSCTHHHHT
T ss_pred             EECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc------eEEEEEEecccccccc
Confidence            99876    111110    011112233   3556666666666 9999999863210      11111100        


Q ss_pred             --CCCCeEEEEEecCCCEEEEEec---------CCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCC
Q 001366         1005 --HTNEKNFVGLSTADGYIACGSE---------SNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRR 1073 (1092)
Q Consensus      1005 --h~~~V~~v~~spdg~~lasgs~---------Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd 1073 (1092)
                        +......++++|+++.+..+..         ++.+.++|..+.+.+.++..|               ...++|+|+||
T Consensus       260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---------------~~p~gi~~s~D  324 (368)
T 1mda_H          260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---------------HDSDAIIAAQD  324 (368)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---------------EEECEEEECCS
T ss_pred             ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---------------CCcceEEECCC
Confidence              0011112689999987665432         235669999999988887753               24789999999


Q ss_pred             CC-EEEEEe-cCCeEEEEEc
Q 001366         1074 SD-MVVAAN-SSGCIKVLQM 1091 (1092)
Q Consensus      1074 ~~-~Lasgs-~DG~V~vW~l 1091 (1092)
                      ++ .+++.+ .++.|.|+|+
T Consensus       325 g~~l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          325 GASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEES
T ss_pred             CCEEEEEccCCCCeEEEEEC
Confidence            97 566666 5999999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.81  E-value=5.9e-07  Score=104.80  Aligned_cols=263  Identities=12%  Similarity=0.038  Sum_probs=172.7

Q ss_pred             CeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCCCCccccccee
Q 001366          754 GLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAG----------VSKKIKIFEFNALFNDSVDVYYPAV  823 (1092)
Q Consensus       754 ~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg----------~D~~I~Iwd~~~~~~~~~~~~~~~~  823 (1092)
                      +.+.+.+..++++.+.+..+.     .+  .++++|||+++.++.          .++.|.++|..+..   +...   +
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~-----~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~---vv~~---I  165 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGF-----LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL---PIAD---I  165 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECS-----SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC---EEEE---E
T ss_pred             CeEEEEECCCCEEEEEEECCC-----CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc---EEEE---E
Confidence            577888888888888887542     24  699999999877765          36789999987521   1111   1


Q ss_pred             eec------CCCCeEEEEEecCCCCEEEEEEC--CCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCc
Q 001366          824 EMS------NRSKLSCVCWNNYIKNYLASADY--DGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCS  895 (1092)
Q Consensus       824 ~~~------h~~~V~~v~~sp~~~~~LaSgs~--DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~  895 (1092)
                      ..+      .......+.|+|+ +++|+.+..  +++|.+.|+.+++.+.++..-.  .  ....|.....+++.+.||+
T Consensus       166 ~v~g~~r~~~g~~P~~~~~spD-Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~  240 (426)
T 3c75_H          166 ELPDAPRFLVGTYQWMNALTPD-NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGS  240 (426)
T ss_dssp             EETTCCCCCBSCCGGGSEECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSS
T ss_pred             ECCCccccccCCCcceEEEcCC-CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCC
Confidence            111      0123456889998 777777764  5899999999999888876322  1  2334433467778888999


Q ss_pred             EEEEecCCCceeee----EecC-Cc-eEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc----eEEecC-------CCC
Q 001366          896 VKLWNINEKNSLAT----IKNI-AN-VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP----WCVLAG-------HEK  958 (1092)
Q Consensus       896 I~iWDl~~~~~l~~----l~~~-~~-V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~----~~~l~~-------H~~  958 (1092)
                      +.+.|+.+++....    +... .. ...+.|.+++.. ++..+..+.|++.|+......    +.....       ...
T Consensus       241 ~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~-~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~  319 (426)
T 3c75_H          241 LARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR-LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG  319 (426)
T ss_dssp             EEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE-EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred             EEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE-EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence            99889866655422    2211 11 123567888864 444567899999998754311    110000       001


Q ss_pred             CeEEEEEc-CCCEEEEEEC----------CCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC-EEEEEe-
Q 001366          959 AVSYVKFL-DSGTLVTAST----------DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG-YIACGS- 1025 (1092)
Q Consensus       959 ~V~~v~fs-~~~~L~Sgs~----------Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs- 1025 (1092)
                      ....++++ +++.++....          ++.|.++|+.+        .+.+.++..- ...+.++|+|||+ ++++.. 
T Consensus       320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T--------~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~  390 (426)
T 3c75_H          320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET--------GERINKIELG-HEIDSINVSQDAEPLLYALSA  390 (426)
T ss_dssp             SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT--------CCEEEEEEEE-EEECEEEECCSSSCEEEEEET
T ss_pred             CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC--------CeEEEEEECC-CCcCeEEEccCCCEEEEEEcC
Confidence            11235677 5566555432          35799999984        4555665422 1467899999999 777777 


Q ss_pred             cCCcEEEEeCCCCCceeee
Q 001366         1026 ESNEVYAYHRSLPMPITSY 1044 (1092)
Q Consensus      1026 ~Dg~I~Iwd~~~~~~i~~~ 1044 (1092)
                      .++.|.|+|..+.+.+.++
T Consensus       391 ~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          391 GTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTTEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEe
Confidence            5999999999999998876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.78  E-value=8.9e-06  Score=92.95  Aligned_cols=257  Identities=9%  Similarity=0.006  Sum_probs=160.1

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCe-EEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEee
Q 001366          790 DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKL-SCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYI  868 (1092)
Q Consensus       790 dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V-~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~  868 (1092)
                      ++..+.+++.++.|..+|..+..   .....     .....+ ......   +..++.++.++.|..+|..+|+.+..+.
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~---~~W~~-----~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~  170 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGT---VAWQT-----KVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVN  170 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCC---EEEEE-----ECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC---EEEEE-----eCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence            35677778889999999976521   11110     001111 111122   3578888899999999999999887776


Q ss_pred             ccCccE-----EEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCce-----E---EEEEcc--CCCeEEEEEE
Q 001366          869 EHEKRA-----WSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANV-----C---CVQFSA--HSSHLLAFGS  933 (1092)
Q Consensus       869 ~h~~~V-----~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V-----~---sl~fsp--~~~~~latgs  933 (1092)
                      ......     ......   +..++.++.++.+..+|..+++.+.........     .   .+...|  .+ ..+++++
T Consensus       171 ~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~  246 (376)
T 3q7m_A          171 LDMPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALA  246 (376)
T ss_dssp             CCC-----CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEEC
T ss_pred             CCCCceeecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEe
Confidence            432211     122222   356788888999999999999998877633210     0   011111  12 2677788


Q ss_pred             CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC-CCCCeEEE
Q 001366          934 ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG-HTNEKNFV 1012 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~-h~~~V~~v 1012 (1092)
                      .++.++.+|..+++..+.. .  ......+.. .++.++.++.++.|..+|..+        +..+..... ....+...
T Consensus       247 ~~g~l~~~d~~tG~~~w~~-~--~~~~~~~~~-~~~~l~~~~~~g~l~~~d~~t--------G~~~w~~~~~~~~~~~~~  314 (376)
T 3q7m_A          247 YNGNLTALDLRSGQIMWKR-E--LGSVNDFIV-DGNRIYLVDQNDRVMALTIDG--------GVTLWTQSDLLHRLLTSP  314 (376)
T ss_dssp             TTSCEEEEETTTCCEEEEE-C--CCCEEEEEE-ETTEEEEEETTCCEEEEETTT--------CCEEEEECTTTTSCCCCC
T ss_pred             cCcEEEEEECCCCcEEeec-c--CCCCCCceE-ECCEEEEEcCCCeEEEEECCC--------CcEEEeecccCCCcccCC
Confidence            8999999999988754433 2  223444444 467888889999999999984        334444431 11112222


Q ss_pred             EEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1013 GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1013 ~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      ..  .+..|+.++.+|.|++||..+++.+.......             .........  .+..|+.++.+|.|..|+
T Consensus       315 ~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~-------------~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          315 VL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS-------------SGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCT-------------TCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             EE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCC-------------CcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            22  35688889999999999999999887765310             000111111  255788889999999987

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.75  E-value=3.4e-06  Score=96.41  Aligned_cols=262  Identities=11%  Similarity=0.005  Sum_probs=158.5

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCcccccceee-----ecCCCCeEE-EEEecCCCCEEEEEECCCcEEEEECCCCceE
Q 001366          791 EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVE-----MSNRSKLSC-VCWNNYIKNYLASADYDGVVKLWDACTGQTV  864 (1092)
Q Consensus       791 g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~-----~~h~~~V~~-v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i  864 (1092)
                      +..+.+++.++.|..||..+...   ........     ......+.+ +...   +..++.++.++.|..+|..+|+.+
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~---~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~~g~l~a~d~~tG~~~  126 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKE---IWSVSLAEKDGWFSKEPALLSGGVTVS---GGHVYIGSEKAQVYALNTSDGTVA  126 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCE---EEEEECCC---CCSCCCCCEEEEEEEE---TTEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCce---eeeecCccccccccccCcccccCceEe---CCEEEEEcCCCEEEEEECCCCCEE
Confidence            56677777788899998764211   00000000     000222322 2222   457888889999999999999988


Q ss_pred             EEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceE------EEEEccCCCeEEEEEECCCeE
Q 001366          865 SHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVC------CVQFSAHSSHLLAFGSADYRT  938 (1092)
Q Consensus       865 ~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~------sl~fsp~~~~~latgs~Dg~I  938 (1092)
                      ..+.............   +..++.++.++.|..+|..+++.+..+.....+.      ..... ++  .+++++.++.|
T Consensus       127 W~~~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~--~v~~g~~~g~l  200 (376)
T 3q7m_A          127 WQTKVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG--AAVVGGDNGRV  200 (376)
T ss_dssp             EEEECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT--EEEECCTTTEE
T ss_pred             EEEeCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC--EEEEEcCCCEE
Confidence            7776443222222222   3578888899999999999999988877543321      12222 22  57778889999


Q ss_pred             EEEEcCCCCcceEEecCCCCC---------eEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCe
Q 001366          939 YCYDLRNARAPWCVLAGHEKA---------VSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009 (1092)
Q Consensus       939 ~vwDlr~~~~~~~~l~~H~~~---------V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V 1009 (1092)
                      ..+|..+++..+.........         +.......++.++.++.++.|..+|..+        +..+.....  ...
T Consensus       201 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t--------G~~~w~~~~--~~~  270 (376)
T 3q7m_A          201 SAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS--------GQIMWKREL--GSV  270 (376)
T ss_dssp             EEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT--------CCEEEEECC--CCE
T ss_pred             EEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC--------CcEEeeccC--CCC
Confidence            999999887654432221100         1000011357788888899999999984        333443331  223


Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEE
Q 001366         1010 NFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVL 1089 (1092)
Q Consensus      1010 ~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW 1089 (1092)
                      ..+.  .++..|..++.++.|+.+|..+++.+......     .        ...+.+...  .+..|+.++.+|.|.+|
T Consensus       271 ~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-----~--------~~~~~~~~~--~~~~l~v~~~~g~l~~~  333 (376)
T 3q7m_A          271 NDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-----L--------HRLLTSPVL--YNGNLVVGDSEGYLHWI  333 (376)
T ss_dssp             EEEE--EETTEEEEEETTCCEEEEETTTCCEEEEECTT-----T--------TSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred             CCce--EECCEEEEEcCCCeEEEEECCCCcEEEeeccc-----C--------CCcccCCEE--ECCEEEEEeCCCeEEEE
Confidence            3333  34668888888999999999999887765410     0        011111111  24567777788888887


Q ss_pred             Ec
Q 001366         1090 QM 1091 (1092)
Q Consensus      1090 ~l 1091 (1092)
                      +.
T Consensus       334 d~  335 (376)
T 3q7m_A          334 NV  335 (376)
T ss_dssp             ET
T ss_pred             EC
Confidence            63

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.74  E-value=1.4e-06  Score=108.38  Aligned_cols=261  Identities=11%  Similarity=0.079  Sum_probs=162.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCCCCccccccee-eecCCCCeEE-EEEecCCCCEEEEEEC------CCcEEEEECCCC
Q 001366          790 DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAV-EMSNRSKLSC-VCWNNYIKNYLASADY------DGVVKLWDACTG  861 (1092)
Q Consensus       790 dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~-~~~h~~~V~~-v~~sp~~~~~LaSgs~------DgtV~IWD~~tg  861 (1092)
                      ++..+.+++.|+.|..+|..+...   ....... .......+.+ ....   +..++.++.      +|.|+.||..+|
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~---~W~~~~~~~~~~~~~~~~~p~v~---~~~v~v~~~~~~~~~~g~v~a~D~~tG  200 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKE---VWHQNTFEGQKGSLTITGAPRVF---KGKVIIGNGGAEYGVRGYITAYDAETG  200 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCE---EEEEETTTTCCSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCE---EeeecCCcCcCcCcccccCcEEE---CCEEEEEecccccCCCCEEEEEECCCC
Confidence            356788888899999999865221   0000000 0000011111 1111   335555543      799999999999


Q ss_pred             ceEEEeeccCcc--------------------------------EEEEEEecCCCCEEEEEeCCC---------------
Q 001366          862 QTVSHYIEHEKR--------------------------------AWSVDFSQVHPTKLASGSDDC---------------  894 (1092)
Q Consensus       862 ~~i~~l~~h~~~--------------------------------V~sv~fsp~~~~~laSgs~Dg---------------  894 (1092)
                      +.+..+......                                ...+++.| +..+++.++.++               
T Consensus       201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~  279 (677)
T 1kb0_A          201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDN  279 (677)
T ss_dssp             CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred             cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCC
Confidence            988877532211                                12567888 667777777654               


Q ss_pred             ----cEEEEecCCCceeeeEecC----------CceEEEEEccCCC--eEEEEEECCCeEEEEEcCCCCcceEEecCCCC
Q 001366          895 ----SVKLWNINEKNSLATIKNI----------ANVCCVQFSAHSS--HLLAFGSADYRTYCYDLRNARAPWCVLAGHEK  958 (1092)
Q Consensus       895 ----~I~iWDl~~~~~l~~l~~~----------~~V~sl~fsp~~~--~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~  958 (1092)
                          +|..+|..+|+.+..++..          .....+....+|.  ..+++++.+|.++++|..+++.....-.....
T Consensus       280 ~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~  359 (677)
T 1kb0_A          280 LYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN  359 (677)
T ss_dssp             TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred             eeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence                5999999999999887731          1233334444552  47889999999999999998754332211100


Q ss_pred             ----------Ce------------------------EEEEEc-CCCEEEEEEC---------------------------
Q 001366          959 ----------AV------------------------SYVKFL-DSGTLVTAST---------------------------  976 (1092)
Q Consensus       959 ----------~V------------------------~~v~fs-~~~~L~Sgs~---------------------------  976 (1092)
                                ++                        ..++|+ ..+.+++...                           
T Consensus       360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  439 (677)
T 1kb0_A          360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG  439 (677)
T ss_dssp             SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred             cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence                      01                        145666 3456665443                           


Q ss_pred             ----------------CCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCc
Q 001366          977 ----------------DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       977 ----------------Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                                      .|.|..||+.+        ++.+..+. +..+++...++.++..++.|+.|+.+++||..+++.
T Consensus       440 ~~~g~~~~~~~~~~~~~g~l~A~D~~t--------G~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          440 WNTAKFFNAEPPKSKPFGRLLAWDPVA--------QKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             CCCCEEECSSCCCSCCEEEEEEEETTT--------TEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccccccccCCCCCccEEEEEeCCC--------CcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence                            27799999883        44555554 233455566778888999999999999999999999


Q ss_pred             eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEE
Q 001366         1041 ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVA 1079 (1092)
Q Consensus      1041 i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Las 1079 (1092)
                      +.++..+.             .....-+.|..+|+.+++
T Consensus       511 lw~~~~~~-------------~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          511 LWEAPTGT-------------GVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEEECSS-------------CCCSCCEEEEETTEEEEE
T ss_pred             eeeeeCCC-------------CcccCCEEEEeCCEEEEE
Confidence            99887532             112233556778764443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.74  E-value=9.5e-07  Score=109.85  Aligned_cols=224  Identities=11%  Similarity=0.087  Sum_probs=150.2

Q ss_pred             CCEEEEEECCCcEEEEECCCCceEEEeecc-C----ccEEEEEEecCCCCEEEEEeC------CCcEEEEecCCCceeee
Q 001366          841 KNYLASADYDGVVKLWDACTGQTVSHYIEH-E----KRAWSVDFSQVHPTKLASGSD------DCSVKLWNINEKNSLAT  909 (1092)
Q Consensus       841 ~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h-~----~~V~sv~fsp~~~~~laSgs~------Dg~I~iWDl~~~~~l~~  909 (1092)
                      +..|+.++.|+.|..+|..+|+.+..+..+ .    ..+.+.-... + ..++.++.      ++.|..||..+|+.+..
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-K-GKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-C-CEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            467888899999999999999999888754 1    1221111111 3 34555543      79999999999999988


Q ss_pred             EecCCc---------------------------------eEEEEEccCCCeEEEEEECCC-------------------e
Q 001366          910 IKNIAN---------------------------------VCCVQFSAHSSHLLAFGSADY-------------------R  937 (1092)
Q Consensus       910 l~~~~~---------------------------------V~sl~fsp~~~~~latgs~Dg-------------------~  937 (1092)
                      +.....                                 ...++++|++. ++++++.++                   .
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            863211                                 13578888875 677676654                   5


Q ss_pred             EEEEEcCCCCcceEEecC-CC-------CCeEEEEEc-CC---CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC-
Q 001366          938 TYCYDLRNARAPWCVLAG-HE-------KAVSYVKFL-DS---GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG- 1004 (1092)
Q Consensus       938 I~vwDlr~~~~~~~~l~~-H~-------~~V~~v~fs-~~---~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~- 1004 (1092)
                      |..+|..+++..+..-.. |.       .....+... ++   ..++.++.+|.|.++|..+++.        +..+.- 
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~--------l~~~~~~  356 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF--------ISAKNFV  356 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--------EEEEESS
T ss_pred             EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE--------ecccccc
Confidence            999999998865554332 31       112222222 45   5788999999999999986542        222210 


Q ss_pred             -----------------------------------CCCCeEEEEEecCCCEEEEEecC----------------------
Q 001366         1005 -----------------------------------HTNEKNFVGLSTADGYIACGSES---------------------- 1027 (1092)
Q Consensus      1005 -----------------------------------h~~~V~~v~~spdg~~lasgs~D---------------------- 1027 (1092)
                                                         ..+ -..++++|+++++++.+.+                      
T Consensus       357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~-w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~  435 (677)
T 1kb0_A          357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN-WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ  435 (677)
T ss_dssp             CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC-SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred             ccCcccccCCCCceeeccccCcCCCccEECcCcccccC-CCCceEcCCCCEEEEeChhcceeeecccccccccccccccc
Confidence                                               000 0257899998887765432                      


Q ss_pred             ---------------------CcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeE
Q 001366         1028 ---------------------NEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCI 1086 (1092)
Q Consensus      1028 ---------------------g~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V 1086 (1092)
                                           +.|..||..+++.+..++.+               ..+++..+..++.+++.++.||.|
T Consensus       436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---------------~~~~~g~~~~~g~~v~~g~~dg~l  500 (677)
T 1kb0_A          436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---------------SPWNGGTLTTAGNVVFQGTADGRL  500 (677)
T ss_dssp             GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES---------------SSCCCCEEEETTTEEEEECTTSEE
T ss_pred             cccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC---------------CCCcCcceEeCCCEEEEECCCCcE
Confidence                                 67999999999888877642               123334456778889999999999


Q ss_pred             EEEEc
Q 001366         1087 KVLQM 1091 (1092)
Q Consensus      1087 ~vW~l 1091 (1092)
                      ++||+
T Consensus       501 ~a~D~  505 (677)
T 1kb0_A          501 VAYHA  505 (677)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99985

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.73  E-value=8.1e-08  Score=109.10  Aligned_cols=231  Identities=9%  Similarity=0.050  Sum_probs=147.1

Q ss_pred             CCeEEEEEecCCCCEEEEEE--CCCcEEEEECCCCceEEEee-------ccCccEEEEEEecCCCCEEEEEeC-----CC
Q 001366          829 SKLSCVCWNNYIKNYLASAD--YDGVVKLWDACTGQTVSHYI-------EHEKRAWSVDFSQVHPTKLASGSD-----DC  894 (1092)
Q Consensus       829 ~~V~~v~~sp~~~~~LaSgs--~DgtV~IWD~~tg~~i~~l~-------~h~~~V~sv~fsp~~~~~laSgs~-----Dg  894 (1092)
                      .....|+++++ ++++++..  .++.++||.+.+++ +..+.       .|-..+.+|++.+ ++.++++-..     ++
T Consensus        17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCC-CCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCC
Confidence            57889999997 78888864  23436667665554 33332       2446789999999 6766665433     57


Q ss_pred             cEEEEecCCCceeeeEecC-------CceEEEEEccCCCeEEEEEE---CCCeEEEEEcCCCCcceEEecCCCCCeE-EE
Q 001366          895 SVKLWNINEKNSLATIKNI-------ANVCCVQFSAHSSHLLAFGS---ADYRTYCYDLRNARAPWCVLAGHEKAVS-YV  963 (1092)
Q Consensus       895 ~I~iWDl~~~~~l~~l~~~-------~~V~sl~fsp~~~~~latgs---~Dg~I~vwDlr~~~~~~~~l~~H~~~V~-~v  963 (1092)
                      .|.+||+.+++.+.++...       ..+..++++|++..++++..   .++.|.+||+.+++ ....+.+|..... ..
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AARVLQGYPGIAPEDI  172 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EEEECTTCTTTSCCSC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EEEEecCCCccccccc
Confidence            8999999999877776532       34689999987655666666   68899999998765 3455555432111 02


Q ss_pred             EEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCC-cEEEEeCCC--CC
Q 001366          964 KFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESN-EVYAYHRSL--PM 1039 (1092)
Q Consensus       964 ~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg-~I~Iwd~~~--~~ 1039 (1092)
                      .+. ++..+.+.+.+++++.|..                      .++.++|+|+|++|+.+..++ .|+.++...  ..
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             ceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence            222 4445666677777665531                      356799999999887777655 555554210  00


Q ss_pred             ceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1040 PITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1040 ~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .+.....      .......++......++++++|.++++...++.|.+|+.
T Consensus       231 ~~~~~~~------~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          231 QLTDAEL------GSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             TCCHHHH------HTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             CCChhhh------hcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            0000000      000000112234667999999999999989999999984

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.71  E-value=1.4e-05  Score=86.91  Aligned_cols=257  Identities=7%  Similarity=-0.024  Sum_probs=153.8

Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccC
Q 001366          792 DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHE  871 (1092)
Q Consensus       792 ~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~  871 (1092)
                      .+|+.+.. +.|+.++++......... .+.. ......+.+++|+++.+.++++...++.|..+|...+.....+...-
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~-~~~~-~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~   78 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEA-KAFL-HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGC-EEEE-EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccc-eeee-cCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence            34555443 478888876522111100 0111 11124568999998745566666667899999987665443333323


Q ss_pred             ccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecC-CceEEEEEccCCCeEEEEEEC--CCeEEEEEcCCCCc
Q 001366          872 KRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI-ANVCCVQFSAHSSHLLAFGSA--DYRTYCYDLRNARA  948 (1092)
Q Consensus       872 ~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~-~~V~sl~fsp~~~~~latgs~--Dg~I~vwDlr~~~~  948 (1092)
                      .....+++.+..+.++++-...+.|.++|+........+... .....++++|++..++++...  .+.|..+++.....
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            467899999844556666667789999998744322222222 467899999976555555543  47899998864322


Q ss_pred             ceEEecCCCCCeEEEEEcC-CCEEE-EEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEec
Q 001366          949 PWCVLAGHEKAVSYVKFLD-SGTLV-TASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE 1026 (1092)
Q Consensus       949 ~~~~l~~H~~~V~~v~fs~-~~~L~-Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~ 1026 (1092)
                       .......-.....+++++ ++.|+ +-...+.|.++|...        ......+.+ ......++.. .+.++++...
T Consensus       159 -~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g--------~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~  227 (267)
T 1npe_A          159 -RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ--------PGRRKVLEG-LQYPFAVTSY-GKNLYYTDWK  227 (267)
T ss_dssp             -EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE--------EEEEEEEEC-CCSEEEEEEE-TTEEEEEETT
T ss_pred             -EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC--------CceEEEecC-CCCceEEEEe-CCEEEEEECC
Confidence             112222334678899984 56665 444568899999872        111122222 2233556554 3334444446


Q ss_pred             CCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCC
Q 001366         1027 SNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD 1075 (1092)
Q Consensus      1027 Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~ 1075 (1092)
                      ++.|.+++..+++.+..+..+.             ......|++.|+++
T Consensus       228 ~~~v~~~d~~~g~~~~~i~~g~-------------~~~p~gi~~~~~~~  263 (267)
T 1npe_A          228 TNSVIAMDLAISKEMDTFHPHK-------------QTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEETTTTEEEEEECCSS-------------CCCCCCEEEECSCC
T ss_pred             CCeEEEEeCCCCCceEEEcccc-------------ccccceeeecCccC
Confidence            7899999998888877765321             11356788888876

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.70  E-value=1.8e-06  Score=107.58  Aligned_cols=259  Identities=14%  Similarity=0.095  Sum_probs=157.6

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCccccccee-eecCCCCeEE-EEEecCCCCEEEEEE------CCCcEEEEECCCCc
Q 001366          791 EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAV-EMSNRSKLSC-VCWNNYIKNYLASAD------YDGVVKLWDACTGQ  862 (1092)
Q Consensus       791 g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~-~~~h~~~V~~-v~~sp~~~~~LaSgs------~DgtV~IWD~~tg~  862 (1092)
                      +..+++++.|+.|..+|..+...   ....... .......+.+ ....   +..++.++      .+|.|+.||..+|+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~---~W~~~~~~~~~~~~~~~~sP~v~---~g~v~vg~~~~~~~~~g~v~a~D~~tG~  194 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQR---AWSVDTRADHKRSYTITGAPRVV---NGKVVIGNGGAEFGVRGYVTAYDAETGK  194 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCE---EEEEECCSCTTSCCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             CCEEEEEccCCEEEEEECCCCCE---eeeecCcCCCCCCccccCCcEEE---CCEEEEEeCCCccCCCCEEEEEECCCCc
Confidence            56788888899999999865221   0000000 0000001110 0111   23444443      37899999999999


Q ss_pred             eEEEeeccC------------------------------ccE-EEEEEecCCCCEEEEEeCCCc----------------
Q 001366          863 TVSHYIEHE------------------------------KRA-WSVDFSQVHPTKLASGSDDCS----------------  895 (1092)
Q Consensus       863 ~i~~l~~h~------------------------------~~V-~sv~fsp~~~~~laSgs~Dg~----------------  895 (1092)
                      .+..+....                              ..+ ..+++.| +..+++.++.++.                
T Consensus       195 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y  273 (689)
T 1yiq_A          195 EAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLF  273 (689)
T ss_dssp             EEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTT
T ss_pred             EEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence            887765210                              011 2577888 6678888887764                


Q ss_pred             ---EEEEecCCCceeeeEecC----------CceEEEEEccCCC--eEEEEEECCCeEEEEEcCCCCcceEEecCCCCC-
Q 001366          896 ---VKLWNINEKNSLATIKNI----------ANVCCVQFSAHSS--HLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA-  959 (1092)
Q Consensus       896 ---I~iWDl~~~~~l~~l~~~----------~~V~sl~fsp~~~--~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~-  959 (1092)
                         |..||..+|+.+..++..          ..+.......+|.  ..++.++.+|.++++|.++++.....-..+... 
T Consensus       274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  353 (689)
T 1yiq_A          274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT  353 (689)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence               999999999999888731          1122222222442  368889999999999999987532211111000 


Q ss_pred             -------------------------------------eEEEEEc-CCCEEEEEEC-------------------------
Q 001366          960 -------------------------------------VSYVKFL-DSGTLVTAST-------------------------  976 (1092)
Q Consensus       960 -------------------------------------V~~v~fs-~~~~L~Sgs~-------------------------  976 (1092)
                                                           -..++|+ ..+.+++.+.                         
T Consensus       354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g  433 (689)
T 1yiq_A          354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG  433 (689)
T ss_dssp             EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred             cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence                                                 0124565 3445554422                         


Q ss_pred             --------------------CCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCC
Q 001366          977 --------------------DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       977 --------------------Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~ 1036 (1092)
                                          +|.|..||+.        +++.+..+..+. +.+...++..+.+++.|+.|+.|+.||..
T Consensus       434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~--------tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPV--------KQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             SEECCCCSSHHHHHHHHTTCEEEEEEEETT--------TTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccccccCcccccCCCCCCCcceeEEEEECC--------CCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECC
Confidence                                3779999988        445555555443 33444677788899999999999999999


Q ss_pred             CCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEE
Q 001366         1037 LPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVV 1078 (1092)
Q Consensus      1037 ~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~La 1078 (1092)
                      +++.+..++.+.             .....-+.|..+|+..+
T Consensus       505 tG~~lw~~~~~~-------------~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          505 TGEKLWEQPAAS-------------GVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             TCCEEEEEECSS-------------CCCSCCEEEEETTEEEE
T ss_pred             CCccceeeeCCC-------------CcccCceEEEECCEEEE
Confidence            999999887431             11223366677876443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.70  E-value=6.8e-09  Score=119.53  Aligned_cols=186  Identities=12%  Similarity=0.030  Sum_probs=109.6

Q ss_pred             CCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecC--CceE-
Q 001366          841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI--ANVC-  917 (1092)
Q Consensus       841 ~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~--~~V~-  917 (1092)
                      +..+++++.||.|+.||..+|+.+..+..  ..+.+..+.. ++.++++++.|+.|..||..+++.+..+...  ..+. 
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            67899999999999999999999988876  4555555555 5667888889999999999999887766532  1111 


Q ss_pred             EEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCC
Q 001366          918 CVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTN  996 (1092)
Q Consensus       918 sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~  996 (1092)
                      +..+. .+ ..+++|+.|+.|+.||..+++..+ .+..+..    +.++ .++.+++++.|+.|..||.++++       
T Consensus        86 sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w-~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~-------  151 (369)
T 2hz6_A           86 SPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQ-TLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRE-------  151 (369)
T ss_dssp             CSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSS-------
T ss_pred             CceEe-cC-CEEEEEeCCCEEEEEECCCCcEEE-EecCCCc----ccccccCCEEEEEecCCEEEEEECCCCC-------
Confidence            01111 23 267788899999999999887643 3333321    2223 56788899999999999998543       


Q ss_pred             ceeEEEcCCCCCeEEEEEecCC---CEEEEEecCCcEEEEeCCCCCceeeeec
Q 001366          997 ACSLTFSGHTNEKNFVGLSTAD---GYIACGSESNEVYAYHRSLPMPITSYKF 1046 (1092)
Q Consensus       997 ~~~~~l~~h~~~V~~v~~spdg---~~lasgs~Dg~I~Iwd~~~~~~i~~~~~ 1046 (1092)
                       .+..+..+.  .....++.+.   ..+++++.|+.|+.||..+++.+....+
T Consensus       152 -~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  201 (369)
T 2hz6_A          152 -LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY  201 (369)
T ss_dssp             -CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred             -EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence             222222110  1112233322   5677788999999999999998887664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.64  E-value=3.3e-06  Score=105.16  Aligned_cols=233  Identities=13%  Similarity=0.142  Sum_probs=146.9

Q ss_pred             CCEEEEEECCCcEEEEECCCCceEEEeecc--CccEEEEEEec--CCCCEEEEEe------CCCcEEEEecCCCceeeeE
Q 001366          841 KNYLASADYDGVVKLWDACTGQTVSHYIEH--EKRAWSVDFSQ--VHPTKLASGS------DDCSVKLWNINEKNSLATI  910 (1092)
Q Consensus       841 ~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h--~~~V~sv~fsp--~~~~~laSgs------~Dg~I~iWDl~~~~~l~~l  910 (1092)
                      +..|+.++.|+.|..||..+|+.+..+...  ......+..+|  .++ .++.++      .++.|..||..+|+.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            457888999999999999999988877642  11111111111  033 444443      3789999999999998887


Q ss_pred             ecC----C----------------------------ceEEEEEccCCCeEEEEEECCCe-------------------EE
Q 001366          911 KNI----A----------------------------NVCCVQFSAHSSHLLAFGSADYR-------------------TY  939 (1092)
Q Consensus       911 ~~~----~----------------------------~V~sl~fsp~~~~~latgs~Dg~-------------------I~  939 (1092)
                      ...    .                            ....++++|++. ++++++.++.                   |.
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            621    0                            012578888775 7788877764                   99


Q ss_pred             EEEcCCCCcceEEecC-CC-------CCeEEEEEc-CCC---EEEEEECCCeEEEEEcCCCCCCCCC-------------
Q 001366          940 CYDLRNARAPWCVLAG-HE-------KAVSYVKFL-DSG---TLVTASTDNKLKLWDLKRTSHTGPS-------------  994 (1092)
Q Consensus       940 vwDlr~~~~~~~~l~~-H~-------~~V~~v~fs-~~~---~L~Sgs~Dg~I~vWDl~~~~~~~~~-------------  994 (1092)
                      .+|..+++..+..... |.       ..+...... ++.   .++.++.+|.+.++|..+++.....             
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~  358 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM  358 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence            9999999876544332 32       112222221 343   6888999999999999865431000             


Q ss_pred             -CCcee---------------EEEc---CCCCCeEEEEEecCCCEEEEEec-----------------------------
Q 001366          995 -TNACS---------------LTFS---GHTNEKNFVGLSTADGYIACGSE----------------------------- 1026 (1092)
Q Consensus       995 -~~~~~---------------~~l~---~h~~~V~~v~~spdg~~lasgs~----------------------------- 1026 (1092)
                       ....+               ..+.   +.. .-..++++|+.+++++.+.                             
T Consensus       359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~-~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  437 (689)
T 1yiq_A          359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAH-DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG  437 (689)
T ss_dssp             TTTEEEECHHHHCTTTSSSCEEESSCTTCSS-CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred             cCCCcccchhhccccCCCCeeEeCCCccccc-CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence             00000               0000   000 1123788998887776533                             


Q ss_pred             ----------------CCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1027 ----------------SNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1027 ----------------Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                                      +|.|+.||..+++.+..++.+.               .+..-.+...+.+|+.|+.||.|++||
T Consensus       438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---------------~~~~g~~~tagglvf~gt~dg~l~a~D  502 (689)
T 1yiq_A          438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT---------------IFNGGTLSTAGNLVFEGSADGRVIAYA  502 (689)
T ss_dssp             CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS---------------SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC---------------CccCccceECCCEEEEECCCCcEEEEE
Confidence                            3678889988888887776421               122234556788999999999999998


Q ss_pred             c
Q 001366         1091 M 1091 (1092)
Q Consensus      1091 l 1091 (1092)
                      .
T Consensus       503 ~  503 (689)
T 1yiq_A          503 A  503 (689)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.64  E-value=4.2e-09  Score=121.34  Aligned_cols=149  Identities=15%  Similarity=0.022  Sum_probs=86.2

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCC-CeE
Q 001366          883 HPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK-AVS  961 (1092)
Q Consensus       883 ~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~-~V~  961 (1092)
                      ++..+++++.|+.|..||..+|+.++++.. ..+.+..+..++. ++++++.|+.|+.||..+++..+ ....+.. .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w-~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLT-KLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC-----CCSE-ECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceee-eeeccCccccc
Confidence            467899999999999999999999998887 5565555666663 67777899999999998876533 2222210 010


Q ss_pred             -EEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCc
Q 001366          962 -YVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       962 -~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                       +..+..++.+++++.|+.|..||..++        +.+..+..+.    .+.++|+++.|++++.|+.|+.||..+++.
T Consensus        85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG--------~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           85 ASPCRSSDGILYMGKKQDIWYVIDLLTG--------EKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             TCSCC-----CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             cCceEecCCEEEEEeCCCEEEEEECCCC--------cEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence             111113567888889999999999854        3344444332    235567888999999999999999999988


Q ss_pred             eeeeec
Q 001366         1041 ITSYKF 1046 (1092)
Q Consensus      1041 i~~~~~ 1046 (1092)
                      +..+.+
T Consensus       153 ~W~~~~  158 (369)
T 2hz6_A          153 RWNATY  158 (369)
T ss_dssp             CCEEEE
T ss_pred             EEeEec
Confidence            877653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.59  E-value=6.5e-07  Score=102.66  Aligned_cols=257  Identities=11%  Similarity=-0.021  Sum_probs=158.8

Q ss_pred             eEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCCCCcccccceee
Q 001366          755 LCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAG----------VSKKIKIFEFNALFNDSVDVYYPAVE  824 (1092)
Q Consensus       755 ~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg----------~D~~I~Iwd~~~~~~~~~~~~~~~~~  824 (1092)
                      .+.+.+...+++.+.+..+    . .+  .+.|+||++++.++.          .+++|.+||..+...   ...   +.
T Consensus        47 ~vsvID~~t~~v~~~i~vG----~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---v~~---I~  113 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGA----F-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---IAD---IE  113 (368)
T ss_dssp             EEEEEETTTTEEEEEEEEC----T-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---EEE---EE
T ss_pred             eEEEEECCCCeEEEEEeCC----C-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---EEE---EE
Confidence            6678888888888887753    2 24  599999999888776          368899999876221   111   11


Q ss_pred             ec--C----CCCeEEEEEecCCCCEEEEEEC--CCcEEE--EECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCC
Q 001366          825 MS--N----RSKLSCVCWNNYIKNYLASADY--DGVVKL--WDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC  894 (1092)
Q Consensus       825 ~~--h----~~~V~~v~~sp~~~~~LaSgs~--DgtV~I--WD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg  894 (1092)
                      .+  .    ...-..+.++|+ +++++++..  +..|.+  +|..+   +..+.. ...   +.+.|.....+++.+.|+
T Consensus       114 v~~~~~~~~g~~P~~ia~SpD-Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg  185 (368)
T 1mda_H          114 LPDAPRFSVGPRVHIIGNCAS-SACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPA  185 (368)
T ss_dssp             ETTSCSCCBSCCTTSEEECTT-SSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTT
T ss_pred             CCCccccccCCCcceEEEcCC-CCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCC
Confidence            11  0    123457899998 777777764  467888  99877   444431 111   123343445677778899


Q ss_pred             cEEEEecCC-----Cceee----eEec-CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc-ceEEecC-------C
Q 001366          895 SVKLWNINE-----KNSLA----TIKN-IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA-PWCVLAG-------H  956 (1092)
Q Consensus       895 ~I~iWDl~~-----~~~l~----~l~~-~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~-~~~~l~~-------H  956 (1092)
                      .+.+.|+.+     ++.+.    .+.. ..+.   . .+++..+++ .+. +.|.+.|+..... .+..+.-       +
T Consensus       186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~-vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~  259 (368)
T 1mda_H          186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVW-AVA-SSILQGDIPAAGATMKAAIDGNESGRKAD  259 (368)
T ss_dssp             SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEE-CBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred             CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEE-EcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence            999999986     44331    1211 2222   3 555554444 444 8999999865321 1111100       0


Q ss_pred             ---CCCeEEEEEc-CCCEEEEEEC---------CCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC-EEE
Q 001366          957 ---EKAVSYVKFL-DSGTLVTAST---------DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG-YIA 1022 (1092)
Q Consensus       957 ---~~~V~~v~fs-~~~~L~Sgs~---------Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~la 1022 (1092)
                         ......+.|+ +++.++.+..         ++.+.+||+.+        .+.+.++.... ....++|+|||+ .++
T Consensus       260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t--------~~vv~~i~vg~-~p~gi~~s~Dg~~l~v  330 (368)
T 1mda_H          260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--------GQTSGPISNGH-DSDAIIAAQDGASDNY  330 (368)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--------CCEEECCEEEE-EECEEEECCSSSCEEE
T ss_pred             ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC--------CeEEEEEECCC-CcceEEECCCCCEEEE
Confidence               0111125677 5666665432         23566999984        34444443222 477899999997 556


Q ss_pred             EEe-cCCcEEEEeCCCCCceeeeecc
Q 001366         1023 CGS-ESNEVYAYHRSLPMPITSYKFG 1047 (1092)
Q Consensus      1023 sgs-~Dg~I~Iwd~~~~~~i~~~~~~ 1047 (1092)
                      +.. .++.|.|+|..+.+.+.++..|
T Consensus       331 a~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          331 ANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             EccCCCCeEEEEECCCCcEEEEEECC
Confidence            666 5999999999999999888753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.58  E-value=2e-06  Score=95.85  Aligned_cols=262  Identities=13%  Similarity=0.115  Sum_probs=165.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEEC
Q 001366          779 ANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDA  858 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~  858 (1092)
                      ...+.++...++|.+++ ++.+  |..||....    .......    ...........   +..|..++.++.|..+|.
T Consensus        59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~~g~----~~~~~~~----~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~  124 (330)
T 3hxj_A           59 EIIECRPSIGKDGTIYF-GSDK--VYAINPDGT----EKWRFDT----KKAIVSDFTIF---EDILYVTSMDGHLYAINT  124 (330)
T ss_dssp             GEEEECCEETTTTEECC-SSCE--EEEECCCGG----GGGGSCC---------CCEEEE---TTEEEEECTTSEEEEECT
T ss_pred             CCcccceEEecCCcEEE-ecCc--EEEECCCCc----EEEEEEC----CCCcccCceEE---CCEEEEEecCCEEEEEcC
Confidence            34567777877776554 3333  777774321    1111110    11112222233   346777888999999998


Q ss_pred             CCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec-CCceEEEEEccCCCeEEEEEECCCe
Q 001366          859 CTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN-IANVCCVQFSAHSSHLLAFGSADYR  937 (1092)
Q Consensus       859 ~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~-~~~V~sl~fsp~~~~~latgs~Dg~  937 (1092)
                      . ++....+..+...+.++...+ ++. +..++.++.|..||.. ++.+..+.. ...+.++.+.+++.  +.+++  +.
T Consensus       125 ~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~--l~v~t--~~  196 (330)
T 3hxj_A          125 D-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT--IYFGS--DK  196 (330)
T ss_dssp             T-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC--EEEES--SS
T ss_pred             C-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE--EEEEe--CE
Confidence            8 877777665555566666665 444 6667888999999999 887777664 34566777777774  44454  88


Q ss_pred             EEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecC
Q 001366          938 TYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTA 1017 (1092)
Q Consensus       938 I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd 1017 (1092)
                      |..|| .+++. ..........+.++...+++.|..++.++.|..+|..         +.....+......+..+.+.++
T Consensus       197 l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~  265 (330)
T 3hxj_A          197 VYAIN-PDGTE-KWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD---------GTEKWRFKTGKRIESSPVIGNT  265 (330)
T ss_dssp             EEEEC-TTSCE-EEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTT---------SCEEEEEECSSCCCSCCEECTT
T ss_pred             EEEEC-CCCcE-EEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCC---------CCEeEEeeCCCCccccceEcCC
Confidence            99999 55543 3344444456777777766678888888899988743         2334444443333444555555


Q ss_pred             CCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1018 DGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1018 g~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      + .|..++.++.|+.+|. .++.+..+..              ....+.++...+++.+ ..++.+|.+++..
T Consensus       266 g-~l~v~t~~ggl~~~d~-~g~~~~~~~~--------------~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~  321 (330)
T 3hxj_A          266 D-TIYFGSYDGHLYAINP-DGTEKWNFET--------------GSWIIATPVIDENGTI-YFGTRNGKFYALF  321 (330)
T ss_dssp             S-CEEEECTTCEEEEECT-TSCEEEEEEC--------------SSCCCSCCEECTTCCE-EEECTTSCEEEEE
T ss_pred             C-eEEEecCCCCEEEECC-CCcEEEEEEc--------------CCccccceEEcCCCEE-EEEcCCCeEEEEe
Confidence            5 5667778888999985 5666655442              1234566777777774 4588899998865

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.56  E-value=1.9e-05  Score=91.50  Aligned_cols=233  Identities=11%  Similarity=0.029  Sum_probs=146.3

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCC----ceEEEee------c-cCccEEEEEEecCCCCEEEEEeCC------CcEEEEe
Q 001366          838 NYIKNYLASADYDGVVKLWDACTG----QTVSHYI------E-HEKRAWSVDFSQVHPTKLASGSDD------CSVKLWN  900 (1092)
Q Consensus       838 p~~~~~LaSgs~DgtV~IWD~~tg----~~i~~l~------~-h~~~V~sv~fsp~~~~~laSgs~D------g~I~iWD  900 (1092)
                      .+...+++++-.++.|.++|+.+.    +..+++.      . .......+.+.| ++ +++++..+      +.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence            553456667778899999999765    5666663      1 112455677888 77 77777666      7899999


Q ss_pred             cCCCceeeeEecC-C---ceEEEEEccCCCeEEEEEE-------------------CCCeEEEEEcCCCCcceEEecC--
Q 001366          901 INEKNSLATIKNI-A---NVCCVQFSAHSSHLLAFGS-------------------ADYRTYCYDLRNARAPWCVLAG--  955 (1092)
Q Consensus       901 l~~~~~l~~l~~~-~---~V~sl~fsp~~~~~latgs-------------------~Dg~I~vwDlr~~~~~~~~l~~--  955 (1092)
                      ..+.+.+.++... .   --..+.|+|+++ .+++..                   .+.+|.+||+.+.+ .+.++..  
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~vg~  248 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLTLGE  248 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEESCT
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEecCC
Confidence            9999999988732 1   234588899996 666663                   37899999999754 3444432  


Q ss_pred             CCCCeEEEEE--c-CCCEEEEEE------CCCeEEEEEcCCCCCCCCCCCceeEEE--cC----------------CCCC
Q 001366          956 HEKAVSYVKF--L-DSGTLVTAS------TDNKLKLWDLKRTSHTGPSTNACSLTF--SG----------------HTNE 1008 (1092)
Q Consensus       956 H~~~V~~v~f--s-~~~~L~Sgs------~Dg~I~vWDl~~~~~~~~~~~~~~~~l--~~----------------h~~~ 1008 (1092)
                      .......|.|  + ++.+++.++      .+++|.+|....+.      ......+  ..                -.+.
T Consensus       249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~------~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~  322 (462)
T 2ece_A          249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK------WNAEKVIEIPAEPLEGNLPEILKPFKAVPPL  322 (462)
T ss_dssp             TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE------EEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred             CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc------eeEEEEEeCCCccccccccccccccccCCCc
Confidence            1234556666  5 455655544      56788877664211      0111111  10                0234


Q ss_pred             eEEEEEecCCCEEEEEe-cCCcEEEEeCCCC---Cceeeeecccc-CCCCCccccCCCCCCEEEEEEeCCCCEEEEEe
Q 001366         1009 KNFVGLSTADGYIACGS-ESNEVYAYHRSLP---MPITSYKFGSI-DPISGKETDDDNGLFVSSVCWRRRSDMVVAAN 1081 (1092)
Q Consensus      1009 V~~v~~spdg~~lasgs-~Dg~I~Iwd~~~~---~~i~~~~~~~~-~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs 1081 (1092)
                      ...|.+|+||++|.++. ..+.|.+|++...   +.+..+..|.. .... +.....-......++++|||++|++++
T Consensus       323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~-~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRAD-HPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBC-CTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccc-ccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            67799999999887665 4789999998633   45555554311 0000 000000012357789999999999998

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.47  E-value=2.9e-05  Score=84.48  Aligned_cols=214  Identities=9%  Similarity=-0.018  Sum_probs=138.5

Q ss_pred             ceEEEeeccCcc--EEEEEEecCCCCEEEEEeC--CCcEEEEecCCCceeeeEecCCc--eEEEEEccCCCeEEEEEECC
Q 001366          862 QTVSHYIEHEKR--AWSVDFSQVHPTKLASGSD--DCSVKLWNINEKNSLATIKNIAN--VCCVQFSAHSSHLLAFGSAD  935 (1092)
Q Consensus       862 ~~i~~l~~h~~~--V~sv~fsp~~~~~laSgs~--Dg~I~iWDl~~~~~l~~l~~~~~--V~sl~fsp~~~~~latgs~D  935 (1092)
                      +.+.++. |...  ...+.|++ ++.++++.+.  ++.|.++|+.+++.+.++.....  ...+++.  +..+.++.-.+
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            3455553 5533  57999998 5655555553  68999999999999998875443  2344544  55566666678


Q ss_pred             CeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC--C---CCCeE
Q 001366          936 YRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG--H---TNEKN 1010 (1092)
Q Consensus       936 g~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~--h---~~~V~ 1010 (1092)
                      +.+.++|..+.+. +..+..-...-..+++ +++.++.+..+++|.++|..+        ......+.-  +   -...+
T Consensus        86 ~~v~viD~~t~~v-~~~i~~g~~~g~glt~-Dg~~l~vs~gs~~l~viD~~t--------~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           86 NIGFIYDRRTLSN-IKNFTHQMKDGWGLAT-DGKILYGSDGTSILYEIDPHT--------FKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             SEEEEEETTTTEE-EEEEECCSSSCCEEEE-CSSSEEEECSSSEEEEECTTT--------CCEEEEEECEETTEECCCEE
T ss_pred             CEEEEEECCCCcE-EEEEECCCCCeEEEEE-CCCEEEEECCCCeEEEEECCC--------CcEEEEEEECCCCcccccce
Confidence            9999999987754 3444311122234554 566666666789999999884        333444432  1   12367


Q ss_pred             EEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEE-EEEecCCeEEEE
Q 001366         1011 FVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMV-VAANSSGCIKVL 1089 (1092)
Q Consensus      1011 ~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~L-asgs~DG~V~vW 1089 (1092)
                      .+.|. +|..++....++.|.+-|..+++.+..+.++...+-. ...........+.|+|+|+++.| +|+...+.|.+.
T Consensus       156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~-~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL-IDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH-HHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc-ccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            78888 6755555556889999999999999988763110000 00001112467999999998655 555567888877


Q ss_pred             Ec
Q 001366         1090 QM 1091 (1092)
Q Consensus      1090 ~l 1091 (1092)
                      ++
T Consensus       234 ~l  235 (266)
T 2iwa_A          234 KL  235 (266)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.46  E-value=3.5e-05  Score=89.25  Aligned_cols=227  Identities=9%  Similarity=0.054  Sum_probs=143.8

Q ss_pred             CCCCEEE-EEeCCCcEEEEEcCCCCCCCccccccee----e--ecCCCCeEEEEEecCCCCEEEEEECC------CcEEE
Q 001366          789 RDEDHFA-AAGVSKKIKIFEFNALFNDSVDVYYPAV----E--MSNRSKLSCVCWNNYIKNYLASADYD------GVVKL  855 (1092)
Q Consensus       789 pdg~~la-tgg~D~~I~Iwd~~~~~~~~~~~~~~~~----~--~~h~~~V~~v~~sp~~~~~LaSgs~D------gtV~I  855 (1092)
                      ++.++|. +|..+++|.|+|+.+.... ..... .+    .  ......-..+...|+ + +++++..+      |.|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~-p~~~k-~ie~~~~~~~~g~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPRE-PKIIK-VIEPEEVKKVSGYSRLHTVHCGPD-A-IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTS-CEEEE-EECHHHHHHHHCEEEEEEEEECSS-C-EEEEEEEETTSCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCC-ceeee-eechhhcccccCCCcccceeECCC-e-EEEEcCCCcCCCCCCeEEE
Confidence            7777665 4557789999998642111 00100 00    0  001113345667787 5 77777666      78999


Q ss_pred             EECCCCceEEEeeccCc---cEEEEEEecCCCCEEEEEe-------------------CCCcEEEEecCCCceeeeEecC
Q 001366          856 WDACTGQTVSHYIEHEK---RAWSVDFSQVHPTKLASGS-------------------DDCSVKLWNINEKNSLATIKNI  913 (1092)
Q Consensus       856 WD~~tg~~i~~l~~h~~---~V~sv~fsp~~~~~laSgs-------------------~Dg~I~iWDl~~~~~l~~l~~~  913 (1092)
                      .|..+++.+.++..-..   -...+-|+| +.+.+++..                   .+.+|.+||+.+++.+.++...
T Consensus       169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             ECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             EECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            99999999998863222   235688899 778888875                   3789999999999888888864


Q ss_pred             ---CceEEEEE--ccCCCeEEEEEE-----CCCeEEEEEcCCCCcc-eEE--ecC----------------CCCCeEEEE
Q 001366          914 ---ANVCCVQF--SAHSSHLLAFGS-----ADYRTYCYDLRNARAP-WCV--LAG----------------HEKAVSYVK  964 (1092)
Q Consensus       914 ---~~V~sl~f--sp~~~~~latgs-----~Dg~I~vwDlr~~~~~-~~~--l~~----------------H~~~V~~v~  964 (1092)
                         ....-+.|  +|++...++++-     .++.|.+|....+.-. ..+  +..                -......|.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence               23455655  999975555555     7788877665432110 000  010                024567888


Q ss_pred             Ec-CCCEEEEEE-CCCeEEEEEcCCCCCCCCCCCceeEEEcCC-----------C---CCeEEEEEecCCCEEEEEe
Q 001366          965 FL-DSGTLVTAS-TDNKLKLWDLKRTSHTGPSTNACSLTFSGH-----------T---NEKNFVGLSTADGYIACGS 1025 (1092)
Q Consensus       965 fs-~~~~L~Sgs-~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h-----------~---~~V~~v~~spdg~~lasgs 1025 (1092)
                      ++ ++++|+.+. ..+.|.+||+....     ....+..+...           .   ..-..+.++|||++|+++.
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~-----~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPF-----KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTT-----SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCC-----CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            88 677776555 57899999996321     12333333211           0   1246789999999888877

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.41  E-value=4.5e-05  Score=82.29  Aligned_cols=203  Identities=11%  Similarity=0.078  Sum_probs=135.5

Q ss_pred             eEEEeeccCcc--EEEEEEecCCCCEEEEEeCCC--cEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeE
Q 001366          863 TVSHYIEHEKR--AWSVDFSQVHPTKLASGSDDC--SVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRT  938 (1092)
Q Consensus       863 ~i~~l~~h~~~--V~sv~fsp~~~~~laSgs~Dg--~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I  938 (1092)
                      .+.++ .|...  ...+.|+  ++.++.+.+.+|  .|+++|+.+++.+..+............+++..+.++.-.++.+
T Consensus        33 vv~~~-phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEe-cCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence            45566 35544  3788887  467778888776  89999999999999988666654443444455566666679999


Q ss_pred             EEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC----CC-CCeEEEE
Q 001366          939 YCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG----HT-NEKNFVG 1013 (1092)
Q Consensus       939 ~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~----h~-~~V~~v~ 1013 (1092)
                      .+||..+.+. +.++.... .-..+++ +++.|+.+..+++|.++|..+        ...+.++.-    .. ..++.+.
T Consensus       110 ~v~D~~t~~~-~~ti~~~~-eG~glt~-dg~~L~~SdGs~~i~~iDp~T--------~~v~~~I~V~~~g~~~~~lNELe  178 (262)
T 3nol_A          110 FVWNIRNLRQ-VRSFNYDG-EGWGLTH-NDQYLIMSDGTPVLRFLDPES--------LTPVRTITVTAHGEELPELNELE  178 (262)
T ss_dssp             EEEETTTCCE-EEEEECSS-CCCCEEE-CSSCEEECCSSSEEEEECTTT--------CSEEEEEECEETTEECCCEEEEE
T ss_pred             EEEECccCcE-EEEEECCC-CceEEec-CCCEEEEECCCCeEEEEcCCC--------CeEEEEEEeccCCccccccceeE
Confidence            9999998764 44443211 1234444 566676666678899999884        333444332    11 3356677


Q ss_pred             EecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec
Q 001366         1014 LSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS 1082 (1092)
Q Consensus      1014 ~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~ 1082 (1092)
                      |. +|..+|..-.++.|.+.|..+++.+..+.++...+....  ........+.|||+|+++.|..+|.
T Consensus       179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~--~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP--LPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS--CCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc--ccCcCCceEEEEEcCCCCEEEEECC
Confidence            76 666555555688999999999999999886432211100  1122456899999999888777764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.37  E-value=0.00016  Score=78.41  Aligned_cols=220  Identities=12%  Similarity=0.049  Sum_probs=136.7

Q ss_pred             CEEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECC
Q 001366          781 VICSISFDRDEDH-FAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDAC  859 (1092)
Q Consensus       781 ~V~sl~fspdg~~-latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~  859 (1092)
                      .+.+++|++++.. +++-..++.|.+++......       ............+++++++.+.++++....+.|.+++..
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-------~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~  109 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD  109 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-------EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-------EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence            4578999996654 44555678899999865211       011111224678999998745566666667899999986


Q ss_pred             CCceEEEeeccCccEEEEEEecCCCCEEEEEeC--CCcEEEEecCCCceeeeEe--cCCceEEEEEccCCCeEEEEEECC
Q 001366          860 TGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD--DCSVKLWNINEKNSLATIK--NIANVCCVQFSAHSSHLLAFGSAD  935 (1092)
Q Consensus       860 tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~--Dg~I~iWDl~~~~~l~~l~--~~~~V~sl~fsp~~~~~latgs~D  935 (1092)
                      .................++++|..+.++++...  .+.|..+++.. .....+.  .......++++|++..++++....
T Consensus       110 g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence            443222222222457899999943444444433  46888888763 3333332  234578999999877677777778


Q ss_pred             CeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEE-CCCeEEEEEcCCCCCCCCCCCceeEEEcCCC-CCeEEEE
Q 001366          936 YRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTAS-TDNKLKLWDLKRTSHTGPSTNACSLTFSGHT-NEKNFVG 1013 (1092)
Q Consensus       936 g~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs-~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~-~~V~~v~ 1013 (1092)
                      +.|.++|+..... .....+ ......++.. ++.|+.+. ..+.|.++|..        .+..+.++.... .....++
T Consensus       189 ~~I~~~~~~g~~~-~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~--------~g~~~~~i~~g~~~~p~gi~  257 (267)
T 1npe_A          189 HRAECLNPAQPGR-RKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA--------ISKEMDTFHPHKQTRLYGIT  257 (267)
T ss_dssp             TEEEEEETTEEEE-EEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETT--------TTEEEEEECCSSCCCCCCEE
T ss_pred             CEEEEEecCCCce-EEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCC--------CCCceEEEccccccccceee
Confidence            9999999875322 222222 2344667665 45555444 56899999987        344555654322 2456778


Q ss_pred             EecCCC
Q 001366         1014 LSTADG 1019 (1092)
Q Consensus      1014 ~spdg~ 1019 (1092)
                      +.|++.
T Consensus       258 ~~~~~~  263 (267)
T 1npe_A          258 IALSQC  263 (267)
T ss_dssp             EECSCC
T ss_pred             ecCccC
Confidence            888764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.31  E-value=0.00016  Score=77.30  Aligned_cols=205  Identities=10%  Similarity=0.068  Sum_probs=135.7

Q ss_pred             ceEEEeeccCcc--EEEEEEecCCCCEEEEEeCCC--cEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCe
Q 001366          862 QTVSHYIEHEKR--AWSVDFSQVHPTKLASGSDDC--SVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYR  937 (1092)
Q Consensus       862 ~~i~~l~~h~~~--V~sv~fsp~~~~~laSgs~Dg--~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~  937 (1092)
                      +.+.++ .|...  ...+.|+.  +.++.|.+.+|  .|+.+|+.+++.+..+............+.+..+....-.++.
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~   86 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCE
Confidence            345566 46543  56899985  56777777754  8999999999999998866655444444445566777777999


Q ss_pred             EEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCC-----CCeEEE
Q 001366          938 TYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHT-----NEKNFV 1012 (1092)
Q Consensus       938 I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~-----~~V~~v 1012 (1092)
                      +.+||..+.+. +.++.... .-..+++ +++.|+.+..++.|.++|..+        ...+.++.-..     ..++-+
T Consensus        87 v~v~D~~tl~~-~~ti~~~~-~Gwglt~-dg~~L~vSdgs~~l~~iDp~t--------~~~~~~I~V~~~g~~~~~lNeL  155 (243)
T 3mbr_X           87 GFVYDLATLTP-RARFRYPG-EGWALTS-DDSHLYMSDGTAVIRKLDPDT--------LQQVGSIKVTAGGRPLDNLNEL  155 (243)
T ss_dssp             EEEEETTTTEE-EEEEECSS-CCCEEEE-CSSCEEEECSSSEEEEECTTT--------CCEEEEEECEETTEECCCEEEE
T ss_pred             EEEEECCcCcE-EEEEeCCC-CceEEee-CCCEEEEECCCCeEEEEeCCC--------CeEEEEEEEccCCcccccceee
Confidence            99999998764 44443222 2245554 466666666788999999884        33444443211     234566


Q ss_pred             EEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec
Q 001366         1013 GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS 1082 (1092)
Q Consensus      1013 ~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~ 1082 (1092)
                      .+. +|..+|..-.++.|.+-|..+++.+..+.++...+.... .........++|||+|++..|...|.
T Consensus       156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~-~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA-LTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS-CCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc-ccCCcCCceEEEEEcCCCCEEEEECC
Confidence            665 565555554688999999999999999887543221111 00123457899999998877776653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.29  E-value=1.8e-05  Score=94.71  Aligned_cols=241  Identities=13%  Similarity=0.065  Sum_probs=158.3

Q ss_pred             CCCCEEEEEe-CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEE-e-cCCCCEEEEEE-----------------
Q 001366          789 RDEDHFAAAG-VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCW-N-NYIKNYLASAD-----------------  848 (1092)
Q Consensus       789 pdg~~latgg-~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-s-p~~~~~LaSgs-----------------  848 (1092)
                      +||+++.... .++.|.+.|+.....   .   ..+..........+++ . |+ +.++++++                 
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~---~---~ii~ip~g~~phg~~~~~~p~-~~~v~~~~~~~~p~~~dg~~l~~~~  171 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKC---D---AILEIPNAKGIHGLRPQKWPR-SNYVFCNGEDETPLVNDGTNMEDVA  171 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEE---E---EEEECSSCCSEEEEEECCSSB-CSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceE---e---eEEeCCCCCCCcceeeeecCC-CcEEEEecccccccCCCCccccccc
Confidence            4677665554 456799999875210   0   0112223456778887 4 76 66776663                 


Q ss_pred             -CCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCC---------------------------------
Q 001366          849 -YDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC---------------------------------  894 (1092)
Q Consensus       849 -~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg---------------------------------  894 (1092)
                       +++.+.++|..+.+.+.++.--. ....++++| +++++++.+.+.                                 
T Consensus       172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk  249 (595)
T 1fwx_A          172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  249 (595)
T ss_dssp             GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             ccCceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence             45789999999998888776322 446778899 788887777553                                 


Q ss_pred             -----cEEEEecCC--Cce-eeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc-----------ceEEecC
Q 001366          895 -----SVKLWNINE--KNS-LATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA-----------PWCVLAG  955 (1092)
Q Consensus       895 -----~I~iWDl~~--~~~-l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~-----------~~~~l~~  955 (1092)
                           .|.|.|.++  ++. +..+.......++.++|||.++++++..+.+|.++|+.+.+.           .+... .
T Consensus       250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~  328 (595)
T 1fwx_A          250 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-E  328 (595)
T ss_dssp             SEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-B
T ss_pred             eeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-C
Confidence                 488888887  555 567776667789999999998888888899999999986421           12222 2


Q ss_pred             CCCCeEEEEEcCCCEEE-EEECCCeEEEEEcCCCC--CCCCCCCceeEEEcCCCCCe-E----EEEEecCCCEEEEEec-
Q 001366          956 HEKAVSYVKFLDSGTLV-TASTDNKLKLWDLKRTS--HTGPSTNACSLTFSGHTNEK-N----FVGLSTADGYIACGSE- 1026 (1092)
Q Consensus       956 H~~~V~~v~fs~~~~L~-Sgs~Dg~I~vWDl~~~~--~~~~~~~~~~~~l~~h~~~V-~----~v~~spdg~~lasgs~- 1026 (1092)
                      -......++|++++.++ +.-.|++|.+||+.+..  ..+......+..+..|-.+- .    .+.++|||++|++... 
T Consensus       329 vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          329 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF  408 (595)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence            23457889999544544 56689999999997410  00001134566666665432 1    2346899999887752 


Q ss_pred             --CCc----------EEEEeCCCCC
Q 001366         1027 --SNE----------VYAYHRSLPM 1039 (1092)
Q Consensus      1027 --Dg~----------I~Iwd~~~~~ 1039 (1092)
                        |..          -.++|++.++
T Consensus       409 skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          409 SKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             CccccccCCCCCCCcceEEEcCCCc
Confidence              432          1788886544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.29  E-value=0.00094  Score=84.42  Aligned_cols=272  Identities=9%  Similarity=0.081  Sum_probs=171.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 001366          782 ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTG  861 (1092)
Q Consensus       782 V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg  861 (1092)
                      |.++..++++.+.+ |..++.|..|+.....   .. ...  .......|.++...++ +. |..++.++-+.+||..++
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~---~~-~~~--~~~~~~~i~~i~~d~~-g~-lwigt~~~Gl~~~~~~~~  245 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKT---FE-KVI--PILGTKQIQAILQQSP-TR-IWVATEGAGLFLINPKTK  245 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCC---EE-ECC------CCCEEEEEEEET-TE-EEEEEBSSCEEEEETTTT
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCe---EE-Eec--CCCCCCeeEEEEEcCC-CC-EEEEECCCCeEEEeCCCC
Confidence            88888888887665 5555568888865421   11 000  1113467888887775 44 444555555889998776


Q ss_pred             ceEEEeec-------cCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe--------cCCceEEEEEccCCC
Q 001366          862 QTVSHYIE-------HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK--------NIANVCCVQFSAHSS  926 (1092)
Q Consensus       862 ~~i~~l~~-------h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~--------~~~~V~sl~fsp~~~  926 (1092)
                      +.......       ....|.++...+ ++. |..|+.+ -|.+||..++.......        ....|.++...++|.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~  322 (795)
T 4a2l_A          246 EIKNYLHSPSNPKSISSNYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG  322 (795)
T ss_dssp             EEEEECCCTTCTTSCSCSBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC
T ss_pred             eEEEeecCCCCccccCCCeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC
Confidence            54332211       135689998877 555 4445555 58899987765432211        124699999999885


Q ss_pred             eEEEEEECCCeEEEEEcCCCCcceEEecC-------CCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCcee
Q 001366          927 HLLAFGSADYRTYCYDLRNARAPWCVLAG-------HEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACS  999 (1092)
Q Consensus       927 ~~latgs~Dg~I~vwDlr~~~~~~~~l~~-------H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~  999 (1092)
                        |..|+.++-|.+||..+..  ...+..       ....|.++.....+.|..|+.++-|..||..+..         .
T Consensus       323 --lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~---------~  389 (795)
T 4a2l_A          323 --MWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR---------F  389 (795)
T ss_dssp             --EEEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC---------E
T ss_pred             --EEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc---------E
Confidence              6668888889999876543  222211       2346899988766778889888889999976321         1


Q ss_pred             EEEc---------CCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEE
Q 001366         1000 LTFS---------GHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCW 1070 (1092)
Q Consensus      1000 ~~l~---------~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~ 1070 (1092)
                      ..+.         -..+.|.++...++|..|..|+.++-|.+|+..+++.. .+...     ..    ......|.+++.
T Consensus       390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~-----~~----~l~~~~v~~i~~  459 (795)
T 4a2l_A          390 TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQR-----NS----QLVNENVYAILP  459 (795)
T ss_dssp             EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTT-----TS----CCSCSCEEEEEE
T ss_pred             EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecC-----CC----CcCCCeeEEEEE
Confidence            1111         12356889998888885666777777999998766532 22110     00    123457999999


Q ss_pred             eCCCCEEEEEecCCeEEEEE
Q 001366         1071 RRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1071 spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      .+++.+.++.. +| |.+|+
T Consensus       460 d~~g~lwigt~-~G-l~~~~  477 (795)
T 4a2l_A          460 DGEGNLWLGTL-SA-LVRFN  477 (795)
T ss_dssp             CSSSCEEEEES-SC-EEEEE
T ss_pred             CCCCCEEEEec-Cc-eeEEe
Confidence            99888776654 55 54554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.28  E-value=8.6e-05  Score=80.83  Aligned_cols=193  Identities=6%  Similarity=-0.040  Sum_probs=129.6

Q ss_pred             eEEEEEecCCCCEEEEEEC--CCcEEEEECCCCceEEEeeccCc-cEEEEEEecCCCCEEEEEeCCCcEEEEecCCCcee
Q 001366          831 LSCVCWNNYIKNYLASADY--DGVVKLWDACTGQTVSHYIEHEK-RAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSL  907 (1092)
Q Consensus       831 V~~v~~sp~~~~~LaSgs~--DgtV~IWD~~tg~~i~~l~~h~~-~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l  907 (1092)
                      ...+.|+++ +.++++.+.  ++.|++.|+.+++.+..+.-... ....+++..  ..+.++.-.++.+.++|..+.+.+
T Consensus        23 ~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           23 TQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             EEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEEE
T ss_pred             cccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcEE
Confidence            578999987 655555543  58999999999998888652221 223455543  345555556899999999999999


Q ss_pred             eeEecC-CceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecC-C---CCCeEEEEEcCCCEEEEEECCCeEEE
Q 001366          908 ATIKNI-ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG-H---EKAVSYVKFLDSGTLVTASTDNKLKL  982 (1092)
Q Consensus       908 ~~l~~~-~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~-H---~~~V~~v~fs~~~~L~Sgs~Dg~I~v  982 (1092)
                      .++... ..-  ..+++++..++++ ..++.|.++|..+.+.......+ +   -..+..+.|.++..++....++.|.+
T Consensus       100 ~~i~~g~~~g--~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~v  176 (266)
T 2iwa_A          100 KNFTHQMKDG--WGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIAR  176 (266)
T ss_dssp             EEEECCSSSC--CEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEE
T ss_pred             EEEECCCCCe--EEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEE
Confidence            998754 222  3355677655554 46899999999887643333222 1   12366788875533444446789999


Q ss_pred             EEcCCCCCCCCCCCceeEEEcCC-------------CCCeEEEEEecCCC-EEEEEecCCcEEEEeCCC
Q 001366          983 WDLKRTSHTGPSTNACSLTFSGH-------------TNEKNFVGLSTADG-YIACGSESNEVYAYHRSL 1037 (1092)
Q Consensus       983 WDl~~~~~~~~~~~~~~~~l~~h-------------~~~V~~v~~spdg~-~lasgs~Dg~I~Iwd~~~ 1037 (1092)
                      .|..+        +..+..+.-.             ....+.++|+|+++ +++++...+.|++.++..
T Consensus       177 ID~~t--------g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          177 ISAKD--------GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EETTT--------CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EECCC--------CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            99984        4445555321             13468999999976 566677788888887643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.26  E-value=7.5e-05  Score=92.63  Aligned_cols=232  Identities=10%  Similarity=0.109  Sum_probs=143.2

Q ss_pred             CCEEEEEECCCcEEEEECCCCceEEEeeccC----ccEEE-EEEecCCCCEEEEEeC------CCcEEEEecCCCceeee
Q 001366          841 KNYLASADYDGVVKLWDACTGQTVSHYIEHE----KRAWS-VDFSQVHPTKLASGSD------DCSVKLWNINEKNSLAT  909 (1092)
Q Consensus       841 ~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~----~~V~s-v~fsp~~~~~laSgs~------Dg~I~iWDl~~~~~l~~  909 (1092)
                      +..|+.++.|+.|..+|..+|+.+..+....    ..+.+ ....  ++ .++.++.      ++.|..||..+|+.+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            4578888899999999999999888776421    11111 1111  33 4555443      58999999999999988


Q ss_pred             EecC--C------------------------------ceEEEEEccCCCeEEEEEECCC-------------------eE
Q 001366          910 IKNI--A------------------------------NVCCVQFSAHSSHLLAFGSADY-------------------RT  938 (1092)
Q Consensus       910 l~~~--~------------------------------~V~sl~fsp~~~~~latgs~Dg-------------------~I  938 (1092)
                      +...  .                              ....++++|... ++++++.++                   .|
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v  272 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSI  272 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            7631  0                              012467888775 777777666                   49


Q ss_pred             EEEEcCCCCcceEEecC-CC-------CCeEEEEEc-CCC---EEEEEECCCeEEEEEcCCCCCCCC-------------
Q 001366          939 YCYDLRNARAPWCVLAG-HE-------KAVSYVKFL-DSG---TLVTASTDNKLKLWDLKRTSHTGP-------------  993 (1092)
Q Consensus       939 ~vwDlr~~~~~~~~l~~-H~-------~~V~~v~fs-~~~---~L~Sgs~Dg~I~vWDl~~~~~~~~-------------  993 (1092)
                      ..+|..+++..+..-.. |.       .++....+. ++.   .++.++.+|.+.++|..+++....             
T Consensus       273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d  352 (668)
T 1kv9_A          273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (668)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence            99999999876554433 32       222222222 343   588899999999999986542100             


Q ss_pred             -CCCceeE------------EEcCCCC--CeEEEEEecCCCEEEEEe---------------------------------
Q 001366          994 -STNACSL------------TFSGHTN--EKNFVGLSTADGYIACGS--------------------------------- 1025 (1092)
Q Consensus       994 -~~~~~~~------------~l~~h~~--~V~~v~~spdg~~lasgs--------------------------------- 1025 (1092)
                       ..+..+.            .+.+...  .-..++++|+.+.+....                                 
T Consensus       353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p  432 (668)
T 1kv9_A          353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (668)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence             0000000            0000000  011267888766554321                                 


Q ss_pred             ---cCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1026 ---ESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1026 ---~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                         .+|.|+.||..+++.+.+++.+.               .+....+...+.+|+.++.||.|++||.
T Consensus       433 ~~~~~g~l~A~D~~tG~~~W~~~~~~---------------~~~~~~~~t~gg~vf~g~~dg~l~a~d~  486 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAAWKVPYPT---------------HWNGGTLSTAGNLVFQGTAAGQMHAYSA  486 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEESS---------------SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             CCCccceEEEEeCCCCcEEEEccCCC---------------CCcCceeEeCCCEEEEECCcccchhhhh
Confidence               23779999999998888776321               1222334457888889999999999984

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.24  E-value=4.6e-05  Score=84.56  Aligned_cols=216  Identities=11%  Similarity=0.032  Sum_probs=141.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeecc
Q 001366          791 EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEH  870 (1092)
Q Consensus       791 g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h  870 (1092)
                      +..+..++.++.|..||... .   ...    ........+.++...++ +. |..++.++.|..||.. ++.+..+...
T Consensus       107 ~~~l~v~t~~~~l~~~d~~g-~---~~~----~~~~~~~~~~~~~~~~~-g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~  175 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTDG-T---EKW----RFKTKKAIYATPIVSED-GT-IYVGSNDNYLYAINPD-GTEKWRFKTN  175 (330)
T ss_dssp             TTEEEEECTTSEEEEECTTS-C---EEE----EEECSSCCCSCCEECTT-SC-EEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred             CCEEEEEecCCEEEEEcCCC-C---EEE----EEcCCCceeeeeEEcCC-CE-EEEEcCCCEEEEECCC-CCEeEEEecC
Confidence            45677777888899888652 1   000    11112334455566554 44 6667788999999998 8877777655


Q ss_pred             CccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec-CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc
Q 001366          871 EKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN-IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP  949 (1092)
Q Consensus       871 ~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~-~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~  949 (1092)
                      ...+.++...+ ++.+ ..++  +.|..|| .+++.+..+.. ...+.++...+++.  +.+++.++.|..+|. +++. 
T Consensus       176 ~~~~~~~~~d~-~g~l-~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~-~g~~-  246 (330)
T 3hxj_A          176 DAITSAASIGK-DGTI-YFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINP-DGTE-  246 (330)
T ss_dssp             SCCCSCCEECT-TCCE-EEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECT-TSCE-
T ss_pred             CCceeeeEEcC-CCEE-EEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe--EEEEcCCCeEEEECC-CCCE-
Confidence            56677777765 5554 4444  7899999 77777766653 35578888888874  666778889999974 3333 


Q ss_pred             eEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCc
Q 001366          950 WCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNE 1029 (1092)
Q Consensus       950 ~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~ 1029 (1092)
                      +..+......+..+.+.+++.|..++.+|.|..+|..         +.....+......+.++...++|. |..|+.+|.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~---------g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~  316 (330)
T 3hxj_A          247 KWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPD---------GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGK  316 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTT---------SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSC
T ss_pred             eEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCC---------CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCe
Confidence            3333333344445555556788889999899999853         233444444455566777777776 555888999


Q ss_pred             EEEEeCC
Q 001366         1030 VYAYHRS 1036 (1092)
Q Consensus      1030 I~Iwd~~ 1036 (1092)
                      +++....
T Consensus       317 ~~~~~~~  323 (330)
T 3hxj_A          317 FYALFNL  323 (330)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            9988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1092
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-09
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-07
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	5e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	7e-09
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-08
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-08
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-08
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	9e-08
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-07
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-07
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	0.004
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-07
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-07
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-07
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-07
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	0.003
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-07
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-07
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	4e-07
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-07
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	5e-07
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-06
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-06
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-06
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-06
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-06
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-06
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-06
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-06
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	3e-06
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-06
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	5e-06
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	5e-06
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	5e-06
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	6e-06
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	6e-06
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	0.002
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.004
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	7e-06
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-05
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	4e-05
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-05
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-04
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-04
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.002
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	4e-04
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	7e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	0.001
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.5 bits (228), Expect = 1e-20
 Identities = 43/156 (27%), Positives = 61/156 (39%), Gaps = 7/156 (4%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
                        S   D   KLWD   G     +  HE    ++ F   +    A+GSD
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246

Query: 893 DCSVKL---WNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP 949
           D + +L       E  + +    I  +  V FS     LLA G  D+    +D   A   
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKAD-R 304

Query: 950 WCVLAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWD 984
             VLAGH+  VS +   D G  + T S D+ LK+W+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.9 bits (185), Expect = 4e-15
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCV 834
           F    + I +I F  + + FA        ++F+  A               +    ++ V
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-----LMTYSHDNIICGITSV 276

Query: 835 CWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC 894
            ++      L +   D    +WDA           H+ R   +  +      +A+GS D 
Sbjct: 277 SFSKS-GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDS 334

Query: 895 SVKLWN 900
            +K+WN
Sbjct: 335 FLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.7 bits (174), Expect = 8e-14
 Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 10/204 (4%)

Query: 833  CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
             +    ++ +                      +                       SG+ 
Sbjct: 145  YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204

Query: 893  DCSVKLWNINEKNSLATIKNI-ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC 951
            D S KLW++ E     T     +++  + F  + +                  +      
Sbjct: 205  DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264

Query: 952  VLAGHEKAVSYVKFLDSG-TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN 1010
                    ++ V F  SG  L+    D    +WD              +   +GH N  +
Sbjct: 265  SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL--------KADRAGVLAGHDNRVS 316

Query: 1011 FVGLSTADGYIACGSESNEVYAYH 1034
             +G++     +A GS  + +  ++
Sbjct: 317  CLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.4 bits (155), Expect = 2e-11
 Identities = 44/263 (16%), Positives = 80/263 (30%), Gaps = 23/263 (8%)

Query: 828  RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKL 887
             +K+  + W       L SA  DG + +WD+ T   V           +  ++       
Sbjct: 55   LAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113

Query: 888  ASGSDD-CSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA 946
              G D+ CS+      E N   + +   +   +             S+   T        
Sbjct: 114  CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173

Query: 947  RAPWCVLAGHEKAVSYVKFLDSGTL-VTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGH 1005
                    GH   V  +       L V+ + D   KLWD+            C  TF+GH
Sbjct: 174  GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV--------REGMCRQTFTGH 225

Query: 1006 TNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFV 1065
             ++ N +         A GS+      +       + +Y   +I               +
Sbjct: 226  ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC------------GI 273

Query: 1066 SSVCWRRRSDMVVAANSSGCIKV 1088
            +SV + +   +++A        V
Sbjct: 274  TSVSFSKSGRLLLAGYDDFNCNV 296

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.4 bits (142), Expect = 8e-10
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 829 SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRA--WSVDFSQVHPTK 886
           S ++ +C+     N  A+   D   +L+D    Q +  Y          SV FS+     
Sbjct: 227 SDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL- 284

Query: 887 LASGSDDCSVKLWNINEKNSLATIKN-IANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
           L +G DD +  +W+  + +    +      V C+  +      +A GS D     ++
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT-DDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (205), Expect = 8e-18
 Identities = 51/307 (16%), Positives = 93/307 (30%), Gaps = 65/307 (21%)

Query: 782  ICSISFDRDEDHFAAAGVSKKIKIFEFN-------------------------------- 809
            +  + F        +A     IK++++                                 
Sbjct: 20   VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79

Query: 810  --ALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHY 867
               +       +     M                +++ SA  D  +K+W+  TG  V  +
Sbjct: 80   DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139

Query: 868  IEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVC---------- 917
              H +    V  +Q   T +AS S+D +V++W +  K   A ++   +V           
Sbjct: 140  TGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 198

Query: 918  ----------CVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD 967
                        + S      L  GS D     +D+         L GH+  V  V F  
Sbjct: 199  YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHS 257

Query: 968  SGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE 1026
             G  +++ + D  L++WD K           C  T + H +    +       Y+  GS 
Sbjct: 258  GGKFILSCADDKTLRVWDYK--------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 1027 SNEVYAY 1033
               V  +
Sbjct: 310  DQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.5 bits (202), Expect = 2e-17
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 23/173 (13%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDF------------- 879
            +   N     +AS   D  V++W   T +  +   EH      + +             
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 880 ------SQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFG 932
                 S      L SGS D ++K+W+++    L T+    N V  V F +    +L+  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS-C 265

Query: 933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKF-LDSGTLVTASTDNKLKLWD 984
           + D     +D +N R     L  HE  V+ + F   +  +VT S D  +K+W+
Sbjct: 266 ADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (179), Expect = 2e-14
 Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 18/268 (6%)

Query: 828  RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKL 887
            RS ++ V ++    + + SA  D  +K+WD  TG        H      + F        
Sbjct: 17   RSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 888  ASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNAR 947
            +  +D           +       +  NV  V    +  H+++      +T         
Sbjct: 76   SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS--RDKTIKMWEVQTG 133

Query: 948  APWCVLAGHEKAVSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHT 1006
                   GH + V  V+    GT + + S D  +++W +        +T  C      H 
Sbjct: 134  YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV--------ATKECKAELREHR 185

Query: 1007 NEKNFVGLSTADGYIACGSES-NEVYAYHRSLPMPITSYKFGSI---DPISGKE--TDDD 1060
            +    +  +    Y +    + +E     +  P  ++  +  +I   D  +G    T   
Sbjct: 186  HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245

Query: 1061 NGLFVSSVCWRRRSDMVVAANSSGCIKV 1088
            +  +V  V +      +++      ++V
Sbjct: 246  HDNWVRGVLFHSGGKFILSCADDKTLRV 273

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 8e-14
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 3/169 (1%)

Query: 775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCV 834
            N    +I S S D+    +  A    K ++ E   +          +    + +  S  
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 210

Query: 835 CWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC 894
             +     +L S   D  +K+WD  TG  +   + H+     V F       + S +DD 
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDK 269

Query: 895 SVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
           ++++W+   K  + T+  +   V  + F   + +++  GS D     ++
Sbjct: 270 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT-GSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 43/244 (17%), Positives = 79/244 (32%), Gaps = 16/244 (6%)

Query: 854  KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI 913
            K W             H      V F  V    + S S+D ++K+W+    +   T+K  
Sbjct: 1    KEWIP-RPPEKYALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFERTLKGH 58

Query: 914  ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVT 973
             +        HS  LLA  SAD     +D +       +        S     +   +V+
Sbjct: 59   TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 974  ASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAY 1033
            AS D  +K+W+++        T  C  TF+GH      V  +     IA  S    V  +
Sbjct: 119  ASRDKTIKMWEVQ--------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170

Query: 1034 HRSLPMPITSYKFGSIDPISGKETDDDNGLFVS------SVCWRRRSDMVVAANSSGCIK 1087
              +        +             + +   +S      +    +    +++ +    IK
Sbjct: 171  VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230

Query: 1088 VLQM 1091
            +  +
Sbjct: 231  MWDV 234

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.3 bits (204), Expect = 2e-17
 Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 30/182 (16%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQT-------VSHYIEHEKRAWSVDFSQVHPT 885
            V  +     Y+A+   D  V++WD+ TG               H+   +SV F++    
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQ 267

Query: 886 KLASGSDDCSVKLWNINEKNSLATIKNI-------------ANVCCVQFSAHSSHLLAFG 932
            + SGS D SVKLWN+   N+ +  K                 V  V  +  +   +  G
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSG 326

Query: 933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-------DSGTLVTASTDNKLKLWDL 985
           S D     +D ++   P  +L GH  +V  V          +     T S D K ++W  
Sbjct: 327 SKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

Query: 986 KR 987
           K+
Sbjct: 386 KK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.8 bits (195), Expect = 3e-16
 Identities = 54/330 (16%), Positives = 110/330 (33%), Gaps = 31/330 (9%)

Query: 780  NVICSISFDRDEDHFAAAG----------VSKKIKIFEFNALFNDSVDVYYPAVEMSNRS 829
            +V+C + F  D ++ A                 +     ++  N   +    +   S+  
Sbjct: 63   SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122

Query: 830  KLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLAS 889
             +  VC++   K     A+   +           +      +       F         S
Sbjct: 123  YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV--S 180

Query: 890  GSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNAR-- 947
            GS D +V++W++       T+     V  V  S      +A GS D     +D       
Sbjct: 181  GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 948  ----APWCVLAGHEKAVSYVKFLDSG-TLVTASTDNKLKLWDLK----RTSHTGPSTNAC 998
                +      GH+ +V  V F   G ++V+ S D  +KLW+L+    ++    P++  C
Sbjct: 241  ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 999  SLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETD 1058
             +T+ GH +    V  +  D YI  GS+   V  + +    P+   + G  + +      
Sbjct: 301  EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVA-- 357

Query: 1059 DDNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088
                   +        ++    +     ++
Sbjct: 358  -----VANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (171), Expect = 3e-13
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 11/132 (8%)

Query: 782 ICSISFDRDEDHFAAAGVSKKIKIFEFN-----ALFNDSVDVYYPAVEMSNRSKLSCVCW 836
           + S+ F RD     +  + + +K++        +              + ++  +  V  
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 837 NNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ---VHP--TKLASGS 891
                 Y+ S   D  V  WD  +G  +     H     SV  +    + P     A+GS
Sbjct: 317 TQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 892 DDCSVKLWNINE 903
            DC  ++W   +
Sbjct: 376 GDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 3e-08
 Identities = 37/320 (11%), Positives = 89/320 (27%), Gaps = 69/320 (21%)

Query: 833  CVCWNNYIKNYLASADYDGVVKLWDACTGQ----TVSHYIEHEKRAWSVDFSQVHPTKLA 888
             +  ++           +    L++    +     +   ++H      V FS      LA
Sbjct: 20   LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLA 78

Query: 889  SGSDDCSVKLWNINEKNSLATIKNIAN-------------------VCCVQFSAHSSHLL 929
            +G +  + +++ +++ + +A + + +                    +  V FS     L 
Sbjct: 79   TGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 930  A-----------------------------------------FGSADYRTYCYDLRNARA 948
                                                       GS D     +DLR  + 
Sbjct: 138  TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

Query: 949  PWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNE 1008
               +          V   D   +   S D  +++WD   T       ++ + + +GH + 
Sbjct: 198  SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS-ETGFLVERLDSENESGTGHKDS 256

Query: 1009 KNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSV 1068
               V  +     +  GS    V  ++       +  K  +            +  FV SV
Sbjct: 257  VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSV 314

Query: 1069 CWRRRSDMVVAANSSGCIKV 1088
               +  + +++ +    +  
Sbjct: 315  ATTQNDEYILSGSKDRGVLF 334

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 1e-16
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 14/161 (8%)

Query: 832 SCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGS 891
           + V   ++   Y+ SA  D  +K+W+  T + V     H+     +   Q     + SGS
Sbjct: 139 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---RGIACLQYRDRLVVSGS 195

Query: 892 DDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC 951
            D +++LW+I     L  ++    +         +  +  G+ D +   +DL  A  P  
Sbjct: 196 SDNTIRLWDIECGACLRVLEGHEELVRCIR--FDNKRIVSGAYDGKIKVWDLVAALDPRA 253

Query: 952 --------VLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWD 984
                    L  H   V  ++F D   +V++S D+ + +WD
Sbjct: 254 PAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 6e-10
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 22/120 (18%)

Query: 790 DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADY 849
            +    +      I+++          D+   A           V    +    + S  Y
Sbjct: 187 RDRLVVSGSSDNTIRLW----------DIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 236

Query: 850 DGVVKLWDACTG---------QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
           DG +K+WD               +   +EH  R + + F      ++ S S D ++ +W+
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 50/257 (19%), Positives = 86/257 (33%), Gaps = 33/257 (12%)

Query: 832  SCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGS 891
             C+ +++     + S   D  +K+WD  T +       H      + + +       +GS
Sbjct: 19   YCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI---ITGS 72

Query: 892  DDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC 951
             D +V++W++N    L T+ +           +   +          +            
Sbjct: 73   SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132

Query: 952  VLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011
            VL GH  AV+ V F D   +V+AS D  +K+W+         ST     T +GH      
Sbjct: 133  VLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNT--------STCEFVRTLNGHKRGIAC 183

Query: 1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWR 1071
            +     D  +  GS  N +  +                D   G       G      C R
Sbjct: 184  L--QYRDRLVVSGSSDNTIRLW----------------DIECGACLRVLEGHEELVRCIR 225

Query: 1072 RRSDMVVAANSSGCIKV 1088
              +  +V+    G IKV
Sbjct: 226  FDNKRIVSGAYDGKIKV 242

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 3e-14
 Identities = 46/215 (21%), Positives = 84/215 (39%), Gaps = 13/215 (6%)

Query: 817  DVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWS 876
            D+            ++ V    Y    + S  YD +VK+WD  T   +     H  R +S
Sbjct: 123  DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 182

Query: 877  VDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIAN-VCCVQFSAHSSHLLAFGSAD 935
            + F       + SGS D S+++W++   N + T+    +    ++      ++L  G+AD
Sbjct: 183  LQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNAD 236

Query: 936  YRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTL-VTASTDNKLKLWDLKRTSHTG-P 993
                 +D++  +    +   ++   +      +    +T+S D  +KLWDLK    TG  
Sbjct: 237  STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK----TGEF 292

Query: 994  STNACSLTFSGHTNEKNFVGLSTADGYIACGSESN 1028
              N  +L   G       +  S      A GS + 
Sbjct: 293  IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 6e-12
 Identities = 40/253 (15%), Positives = 87/253 (34%), Gaps = 54/253 (21%)

Query: 831  LSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFS---------- 880
            ++C+ +     N + S   D  +K+W A TG+ +   + H    WS              
Sbjct: 20   ITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTD 76

Query: 881  ---------------------------QVHPTKLASGSDDCSVKLWNINEKNSLATIKNI 913
                                        +H  ++ SGS D ++++W+I     L  +   
Sbjct: 77   RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG- 135

Query: 914  ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVT 973
             +V  V+   +    +  G+ D+    +D          L GH   V  ++F D   +V+
Sbjct: 136  -HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF-DGIHVVS 192

Query: 974  ASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAY 1033
             S D  +++WD++            +   +   ++    G+   D  +  G+  + V  +
Sbjct: 193  GSLDTSIRVWDVET----------GNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242

Query: 1034 HRSLPMPITSYKF 1046
                   + + + 
Sbjct: 243  DIKTGQCLQTLQG 255

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 2e-11
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 17/152 (11%)

Query: 790 DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADY 849
           D  H  +  +   I+++          DV       +     S         N L S + 
Sbjct: 186 DGIHVVSGSLDTSIRVW----------DVETGNCIHTLTGHQSLTSGMELKDNILVSGNA 235

Query: 850 DGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLAT 909
           D  VK+WD  TGQ +       K   +V   Q +   + + SDD +VKLW++     +  
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295

Query: 910 IKNIAN------VCCVQFSAHSSHLLAFGSAD 935
           +  + +      V  ++ S ++  + A GS +
Sbjct: 296 LVTLESGGSGGVVWRIRAS-NTKLVCAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 8/119 (6%)

Query: 952  VLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011
            VL GH+  V          +V+ S DN LK+W           T  C  T  GHT     
Sbjct: 11   VLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAV--------TGKCLRTLVGHTGGVWS 62

Query: 1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCW 1070
              +            + +V+       +        ++  +   E    +G   +++  
Sbjct: 63   SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.1 bits (154), Expect = 3e-11
 Identities = 36/254 (14%), Positives = 70/254 (27%), Gaps = 21/254 (8%)

Query: 832  SCVCWNNYIKNYLASADYDGVVKLWDACTGQ--TVSHYIEHEKRAWSVDFSQVHPTKLAS 889
            SC  WN   +  +A    +  V +++    +   V    EH  +   VD++     ++ +
Sbjct: 11   SCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVT 68

Query: 890  GSDDCSVKLWNINEKNSL--ATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNAR 947
               D +  +W +  +       I  I         A +    A GS              
Sbjct: 69   CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 948  APWCVLAGHEKAVSYV----KFLDSGTLVTASTDNKLKLWDLKRTS----------HTGP 993
              W      +   S V       +S  L   S D K +++                 +  
Sbjct: 129  DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 994  STNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPIS 1053
                     S      + V  S     +A  S  + V        M + +    +  P+ 
Sbjct: 189  PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET-LPLL 247

Query: 1054 GKETDDDNGLFVSS 1067
                  ++ L  + 
Sbjct: 248  AVTFITESSLVAAG 261

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.0 bits (151), Expect = 7e-11
 Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 9/192 (4%)

Query: 800 SKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDAC 859
            K+++       +   +       E S+          +   + +A   +D  V L DA 
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231

Query: 860 TGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCV 919
               V+          +V F     + +A+G D C   L+  +      +     +V   
Sbjct: 232 KKMAVATLASETLPLLAVTFITES-SLVAAGHD-CFPVLFTYDSAAGKLSFGGRLDVPKQ 289

Query: 920 QFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSG-----TLVTA 974
                 +    F + D +       +A A   + + H+ +VS +  L  G        T 
Sbjct: 290 SSQRGLTARERFQNLDKKASSEG--SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT 347

Query: 975 STDNKLKLWDLK 986
             D  + +WD++
Sbjct: 348 GMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 6/68 (8%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 848 DYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVH---PTKLASGSDDCSVKLWNINE- 903
           + D       +         + H+     +          ++  +   D  + +W++   
Sbjct: 303 NLDKKASSEGSAAAGAGLDSL-HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361

Query: 904 KNSLATIK 911
           +++L  +K
Sbjct: 362 ESALKDLK 369

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.7 bits (150), Expect = 5e-11
 Identities = 22/166 (13%), Positives = 41/166 (24%)

Query: 819 YYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVD 878
             P   +S       V         +       V            S+        +   
Sbjct: 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 179

Query: 879 FSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRT 938
              +    L                 + +  I                 L+A GS D   
Sbjct: 180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 239

Query: 939 YCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWD 984
           + Y ++        L  H+  V+ + +    TLV++  D  +K W+
Sbjct: 240 FIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 5e-08
 Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHPTKLASGS 891
                   ++ +A+   D  + ++       +   +  H+    ++ +    P+ L S  
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE--TPSTLVSSG 276

Query: 892 DDCSVKLWNI 901
            D  +K WN+
Sbjct: 277 ADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 952  VLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHT 1006
             ++GH K ++ +       L++ S D ++  W    + H   S    SL  S   
Sbjct: 8    TISGHNKGITALTV---NPLISGSYDGRIMEWSSS-SMHQDHSNLIVSLDNSKAQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 14/120 (11%), Positives = 32/120 (26%), Gaps = 18/120 (15%)

Query: 832 SCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGS 891
           + +  N      L S  YDG +  W + +        +H     S+D S+          
Sbjct: 17  TALTVN-----PLISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSK--------AQ 58

Query: 892 DDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC 951
           +  S+   +  + N +   +  +       +      +     D         +      
Sbjct: 59  EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 4e-10
 Identities = 28/268 (10%), Positives = 69/268 (25%), Gaps = 16/268 (5%)

Query: 832  SCVCWNNYIKNYLASADYDGVVKLWDACTG---QTVSHYIEHEKRAWSVDFSQVHPTKLA 888
            S +      K+ L    +DG + ++          +   + ++      +F      ++ 
Sbjct: 15   SDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 889  SGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA 948
             G+    +   ++    S   + N      +             ++              
Sbjct: 74   VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133

Query: 949  PWCVLAGHEKAVSYV-------KFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLT 1001
               +   +  + +            +S  L+    +++++ + L          N     
Sbjct: 134  DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL----PLCEDDNGTIEE 189

Query: 1002 FSGHTNEKNFVGLSTADGYIACGSESNEVYAYH-RSLPMPITSYKFGSIDPISGKETDDD 1060
                   ++   L       AC S    V             S K  +         D +
Sbjct: 190  SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249

Query: 1061 NGLFVSSVCWRRRSDMVVAANSSGCIKV 1088
                V+S+ +  R   +  A S G I  
Sbjct: 250  LAYPVNSIEFSPRHKFLYTAGSDGIISC 277

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 3e-08
 Identities = 9/86 (10%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 870 HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI----ANVCCVQFSAHS 925
            +     +       + L   S D S+ ++  + +     +         + C  F  ++
Sbjct: 10  PKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 926 SHLLAFGSADYRTYCYDLRNARAPWC 951
              +  G+        DL  + +   
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQA 94

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 1e-06
 Identities = 28/324 (8%), Positives = 75/324 (23%), Gaps = 36/324 (11%)

Query: 782  ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIK 841
            I  I     +           + +++F+    +          +  +  L C  + +   
Sbjct: 14   ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----LLQSLRYKHPLLCCNFIDNTD 69

Query: 842  NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
              +      G +   D     +      +E         +    KL + S D  +++ + 
Sbjct: 70   LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129

Query: 902  NEKNSLATIKNIANV------CCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAG 955
                         N         +     +S  L  G  + +   + L         +  
Sbjct: 130  RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE 189

Query: 956  HEKAVSYVKFL----DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSL-------TFSG 1004
                           +      +S D ++ +           S+   +          + 
Sbjct: 190  SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249

Query: 1005 HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLF 1064
                 N +  S    ++        +  ++      I ++   +                
Sbjct: 250  LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE--------------- 294

Query: 1065 VSSVCWRRRSDMVVAANSSGCIKV 1088
             S V      +++  A S    K 
Sbjct: 295  DSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 3e-06
 Identities = 10/74 (13%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 832 SCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGS 891
           + + ++     +L +A  DG++  W+  T + + ++ +  +    V  +      L   +
Sbjct: 255 NSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIA-CSDNILCLAT 311

Query: 892 DDCSVKLWNINEKN 905
            D + K     ++ 
Sbjct: 312 SDDTFKTNAAIDQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 24/195 (12%), Positives = 54/195 (27%), Gaps = 33/195 (16%)

Query: 833  CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP---TKLAS 889
             +   +   + L     +  V+ +     +  +  IE     + +    + P      A 
Sbjct: 152  KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC 211

Query: 890  GSDDCSVKLWNINEKNSLATIKN----------------IANVCCVQFSAHSSHLLAFGS 933
             S D  V +   +++                           V  ++FS      L    
Sbjct: 212  SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS-PRHKFLYTAG 270

Query: 934  ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGP 993
            +D    C++L+  +        +E +V  +       L  A++D+  K            
Sbjct: 271  SDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDNILCLATSDDTFKTN---------- 319

Query: 994  STNACSLTFSGHTNE 1008
               A   T   + + 
Sbjct: 320  --AAIDQTIELNASS 332

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 8e-05
 Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 7/85 (8%)

Query: 952  VLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN 1010
            +    +  +S +K +     L+  S D  L ++     +          L    + +   
Sbjct: 6    IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-----LLQSLRYKHPLL 60

Query: 1011 FVGLSTADG-YIACGSESNEVYAYH 1034
                       I  G+   E+    
Sbjct: 61   CCNFIDNTDLQIYVGTVQGEILKVD 85

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 4e-10
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
            + +      +  S   D ++  W    G ++    +      S D S      + +GS 
Sbjct: 270 SLKFAYC-GKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISV-DDKYIVTGSG 326

Query: 893 DCSVKLWNI 901
           D    ++ +
Sbjct: 327 DKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 3e-09
 Identities = 39/281 (13%), Positives = 75/281 (26%), Gaps = 18/281 (6%)

Query: 753  DGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALF 812
             G  K    S    +  +   +  N  N I S     D       G +  + I++     
Sbjct: 71   KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA--- 127

Query: 813  NDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEK 872
                            S  +C        + +  +              QT+    +   
Sbjct: 128  ----APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183

Query: 873  RAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFG 932
               S        TKL +G  D +V+ W++ E   L      + +  + +      L    
Sbjct: 184  DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM 243

Query: 933  SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTG 992
             +      +  +  +    +      ++ +         V+   DN L  W         
Sbjct: 244  ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY--CGKWFVSTGKDNLLNAWRTP------ 295

Query: 993  PSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAY 1033
                  S+  S  ++      +S  D YI  GS   +   Y
Sbjct: 296  ---YGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 1e-08
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 2/88 (2%)

Query: 856 WDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIAN 915
                         HE    S+ F+        S   D  +  W      S+   K  ++
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGASIFQSKESSS 308

Query: 916 VCCVQFSAHSSHLLAFGSADYRTYCYDL 943
           V     S    + +  GS D +   Y++
Sbjct: 309 VLSCDISVDDKY-IVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 3/80 (3%)

Query: 955  GHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGL 1014
             H + V  V   +    V       +K+WD+    +  P      L      N      L
Sbjct: 49   NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP---VSQLDCLNRDNYIRSCKL 105

Query: 1015 STADGYIACGSESNEVYAYH 1034
                  +  G E++ +  + 
Sbjct: 106  LPDGCTLIVGGEASTLSIWD 125

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 4e-04
 Identities = 26/309 (8%), Positives = 59/309 (19%), Gaps = 28/309 (9%)

Query: 780  NVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNY 839
             V+C+++      H    G    +K+++ +   N S       +   N   +        
Sbjct: 52   EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNY--IRSCKLLPD 108

Query: 840  IKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW 899
                L        + +WD                      +    +K+            
Sbjct: 109  -GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 900  NINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA 959
                  +L                 +     +      T                     
Sbjct: 168  WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQ 226

Query: 960  VSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG 1019
            +  + +  +G          L +                      H +    +  +    
Sbjct: 227  IFSLGYCPTG--------EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278

Query: 1020 YIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVA 1079
            +     + N + A+       I   K  S                V S         +V 
Sbjct: 279  WFVSTGKDNLLNAWRTPYGASIFQSKESS---------------SVLSCDISVDDKYIVT 323

Query: 1080 ANSSGCIKV 1088
             +      V
Sbjct: 324  GSGDKKATV 332

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (139), Expect = 1e-09
 Identities = 43/269 (15%), Positives = 97/269 (36%), Gaps = 22/269 (8%)

Query: 779  ANVICSISF--DRDEDHFAAAGVSKKIKIFEFNA-LFNDSVDVYYPAVEMSNRSKLSCVC 835
            ++V+ ++ F   +   +  +   S K+ ++ +     ++SV+V   +        +S + 
Sbjct: 63   SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122

Query: 836  WN-NYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC 894
            W+    +  +     D         +G ++     H +R  +    Q  P +  +  DD 
Sbjct: 123  WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182

Query: 895  SVKLWNINEKNSLATIKNI----ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPW 950
            SV  +        A+ +      + V  V+FS  S   +    +D +  C+D ++     
Sbjct: 183  SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242

Query: 951  CVLAGHEKAVSY---VKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTN 1007
             +    E        + +LDS    T   D  +++WD+        +T+ C   ++    
Sbjct: 243  YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV--------TTSKCVQKWTLDKQ 294

Query: 1008 EKNFVGLS---TADGYIACGSESNEVYAY 1033
            +     +    T +G I   S    +  Y
Sbjct: 295  QLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 9e-09
 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYI--EHEKRAWSVDFSQVHPTKLASG 890
               +       A+   D  +++WD  T + V  +   + +     V        ++ S 
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314

Query: 891 SDDCSVKLWNI 901
           S D ++  + +
Sbjct: 315 SLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 17/124 (13%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 825 MSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP 884
               S +  V ++     ++ +   D  +  +D  +G+ + +  + ++      F+    
Sbjct: 202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 261

Query: 885 --TKLASGSDDCSVKLWNINEKNSLATI---KNIANVCCVQFSAHSSHLLAFGSADYRTY 939
              K A+   D ++++W++     +      K       V   A  +  +   S D    
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 940 CYDL 943
            Y+L
Sbjct: 322 FYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 29/219 (13%), Positives = 61/219 (27%), Gaps = 8/219 (3%)

Query: 773 GEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLS 832
            EF   A  I  IS+D +       G  +       +    +S+       +  N   L 
Sbjct: 109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK 168

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
                  +             +        +   + +       V+FS      + +   
Sbjct: 169 QSRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226

Query: 893 DCSVKLWNINEKNSLATIKNIANVCCVQFS---AHSSHLLAFGSADYRTYCYDLRNARAP 949
           D  +  ++      L  I++                S   A   AD     +D+  ++  
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 286

Query: 950 W-CVLAGHEKAVSYVKFL--DSGTLVTASTDNKLKLWDL 985
               L   +     V  +   +G +++ S D  L  ++L
Sbjct: 287 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 3e-04
 Identities = 28/282 (9%), Positives = 76/282 (26%), Gaps = 26/282 (9%)

Query: 820  YPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQT--VSHYIEHEKRA-WS 876
             P    + R+  + + ++               V+  D    +   V  +  H      +
Sbjct: 9    IPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT 68

Query: 877  VDFSQVHPTK-LASGSDDCSVKLWNINEKNSLATIKNI---------ANVCCVQFSAHSS 926
            V FS +  ++ L SG +   V +W         +++             +  + +     
Sbjct: 69   VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128

Query: 927  HLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLK 986
             L   G        +   ++      ++GH + ++      S  + + +  +   +   +
Sbjct: 129  RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188

Query: 987  RTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKF 1046
                   +++          +    V            S  +  +         I+ +  
Sbjct: 189  GPPFKFSASDRT---HHKQGSFVRDV----------EFSPDSGEFVITVGSDRKISCFDG 235

Query: 1047 GSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088
             S + +   E D +             S       +   I+V
Sbjct: 236  KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 277

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFEL------FGRFDSERALAAAMSDLRDRILPPS 550
           ++ +PE ++        +I+SLG++  E+      +   +  RAL    ++    +  P 
Sbjct: 181 YWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPE 240

Query: 551 FLSENPKEAGFCLWQLHPEPLSRPTTREILQSE 583
            LS   ++  F    L  +   R + +E+LQ +
Sbjct: 241 KLSAIFRD--FLNRCLDMDVEKRGSAKELLQHQ 271

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 311 HGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY 370
            G +L + +        +I    + R+ +  +++ H+  V   D+K  +  L     VK 
Sbjct: 100 AGGSLTDVVTETCMDEGQI--AAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKL 157

Query: 371 I 371
            
Sbjct: 158 T 158

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (139), Expect = 2e-09
 Identities = 20/119 (16%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 831 LSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASG 890
           ++C+ + +   NY+ +   D +++++D+   + +     H+   W++ ++  H   L SG
Sbjct: 16  ITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSG 70

Query: 891 SDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSH--LLAFGSADYRTYCYDLRNAR 947
           S D +V++W+I +       +   +           +   +  GS D   + + L    
Sbjct: 71  STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 6e-09
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 5/153 (3%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
                ++ +    SA  D  +++WD   G+ +     H      +  S          + 
Sbjct: 205 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS----AA 260

Query: 893 DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
                        S     +  N+  +     S ++L  GS + +   Y+LR+ +     
Sbjct: 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN 319

Query: 953 LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDL 985
           +      +  V F     +     D +  L  L
Sbjct: 320 ILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 3/148 (2%)

Query: 870  HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHL 928
            H     +    Q     + +G+DD  +++++   K  L  +  +   V  ++++     +
Sbjct: 11   HMTSVITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68

Query: 929  LAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRT 988
                    R +          +       + +  V++ +   +VT S DN L +W L + 
Sbjct: 69   SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128

Query: 989  SHTGPSTNACSLTFSGHTNEKNFVGLST 1016
            S               HT E+N   +  
Sbjct: 129  SSVPDHGEEHDYPLVFHTPEENPYFVGV 156

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 1e-07
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 819 YYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTV-SHYIEHEKRAWSV 877
            Y      + + LS +       N L S   +    +++  +G+ V ++ ++   + WSV
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSV 330

Query: 878 DFSQVHPTKLASGSDDCSVKLWNIN 902
           +F     T +A+   D    L  ++
Sbjct: 331 NFK--GKTLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 952  VLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011
             L GH  +V      +   ++T + D  ++++D               L  SGH      
Sbjct: 7    TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSI--------NKKFLLQLSGHDGGVWA 58

Query: 1012 VGLSTADGYIACGSESNEVYAYH 1034
            +  +   G +  GS    V  + 
Sbjct: 59   LKYAH-GGILVSGSTDRTVRVWD 80

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 21/199 (10%), Positives = 54/199 (27%), Gaps = 13/199 (6%)

Query: 833  CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
             V   +   N + S  YD  + +WD    + + + +                 +  S S 
Sbjct: 163  SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL-YILSGHTDRIYSTIYDHERKRCISASM 221

Query: 893  DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
            D ++++W++        +                      SA                  
Sbjct: 222  DTTIRIWDLENGE----LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF 277

Query: 953  LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012
               H    +   F  S  ++ + ++N+  +++L+       S            ++   V
Sbjct: 278  SYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR-------SGKLVHANILKDADQIWSV 330

Query: 1013 GLSTADGYIACGSESNEVY 1031
                    +A   +  + +
Sbjct: 331  NFKG-KTLVAAVEKDGQSF 348

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 2e-04
 Identities = 34/312 (10%), Positives = 87/312 (27%), Gaps = 17/312 (5%)

Query: 778  SANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWN 837
              +VI  + F+  +++       K I+++       DS++  +      +   +  + + 
Sbjct: 12   MTSVITCLQFE--DNYVITGADDKMIRVY-------DSINKKFLLQLSGHDGGVWALKYA 62

Query: 838  NYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKL-ASGSDDCSV 896
            +     L S   D  V++WD   G     +  H      +D  +    K   +GS D ++
Sbjct: 63   H--GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120

Query: 897  KLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGH 956
             +W + +++S+       +   V  +    +    G            +      V   +
Sbjct: 121  HVWKLPKESSVPDHGEEHDYPLVFHTPEE-NPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179

Query: 957  EKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLST 1016
            +  +          L   S         +         + +   T      E   +  + 
Sbjct: 180  DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239

Query: 1017 ADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDM 1076
                   G           +           +           +    +S++     SD 
Sbjct: 240  QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN----LSAITTFYVSDN 295

Query: 1077 VVAANSSGCIKV 1088
            ++ + S     +
Sbjct: 296  ILVSGSENQFNI 307

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFE-LFGR--FDSERALAAAMSDLRDRILPPSFLS 553
            Y  PE + G +     +++SLGVL +E L G+  F++           R     P F++
Sbjct: 169 DYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVT 228

Query: 554 ENPKEAGFCLWQLHPEPLSRPTTREILQ 581
           E  ++       L   P  RP  RE+L+
Sbjct: 229 EGARD--LISRLLKHNPSQRPMLREVLE 254

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 57.6 bits (137), Expect = 4e-09
 Identities = 14/170 (8%), Positives = 41/170 (24%), Gaps = 21/170 (12%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-------HEKRAWSVDFSQVHPT 885
                +     L    Y  +    D          +                        
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP-RSM 240

Query: 886 KLASGSDDCSVKLWNINEKN-------SLATIKNIANVCCVQFSAHSSHLLAFGSADYRT 938
              +G  D +      +  N        +  +++   +  V      +            
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300

Query: 939 YCYDLRNARAPWCVLAGHEKAVSYVKF-LDSGTLVTASTDNKLKLWDLKR 987
             YD++  +     +   +  ++ ++   D  T++    D K+  + L++
Sbjct: 301 LKYDVKTRK-----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 16/135 (11%), Positives = 38/135 (28%), Gaps = 10/135 (7%)

Query: 778 SANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWN 837
                            + AG      +++ ++  N     Y   + + +   +  V  +
Sbjct: 226 IPGSPNPTKLVPRSM-TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284

Query: 838 NYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP--TKLASGSDDCS 895
                Y   A   GV+  +D  T +      E +     +  S        +    DD  
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLS---ADRKTVMVRKDDGK 337

Query: 896 VKLWNINEKNSLATI 910
           +  + + +     T+
Sbjct: 338 IYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 50.2 bits (118), Expect = 8e-07
 Identities = 26/279 (9%), Positives = 53/279 (18%), Gaps = 30/279 (10%)

Query: 768  GMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSN 827
            G     E N        +  +      A           E                + + 
Sbjct: 76   GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135

Query: 828  RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKL 887
                  + +   +K+          + ++D    +  +   E+                L
Sbjct: 136  SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA--PAFDADSKNL 193

Query: 888  ASGSDDCSVKLWNINEKNSLATIKNI--------ANVCCVQFSAHSSHLLA-----FGSA 934
               S        +    N    + +          +    +    S    A         
Sbjct: 194  YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253

Query: 935  DYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSG-TLVTASTDNKLKLWDLKRTSHTGP 993
               +              L       S     +       A     L  +D+K    T  
Sbjct: 254  KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV 313

Query: 994  STNACSLTFSGHTNEKNFVGLSTADG-YIACGSESNEVY 1031
              N   L  S             AD   +    +  ++Y
Sbjct: 314  KNNLTDLRLS-------------ADRKTVMVRKDDGKIY 339

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 5e-09
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 478 VSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRF-----DSE 532
           ++      ++     +   +Y SPE+++       S+I+SLG L +EL          S+
Sbjct: 160 LARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ 219

Query: 533 RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
           + LA  + + + R +P  + S+   E       L+ +   RP+  EIL+
Sbjct: 220 KELAGKIREGKFRRIPYRY-SDELNE--IITRMLNLKDYHRPSVEEILE 265

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 7e-09
 Identities = 33/260 (12%), Positives = 74/260 (28%), Gaps = 50/260 (19%)

Query: 870  HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLAT-------------IKNIANV 916
            H+   +SV       +   S S D  +K+W+    ++                + ++  +
Sbjct: 13   HDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 917  CCVQFSAHSSHLLAFGSADYRTYCYDLRNARA---------PWCVLAGHEKAVSYVKFLD 967
              ++  A    L+A  S       Y +                      + +   +K+  
Sbjct: 70   QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 968  SG------TLVTASTDNKLKLWDLKRTSHTGPS----------TNACSLTFSGHTNEKNF 1011
            S        LV         +W     +    S                +    +     
Sbjct: 130  SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWR 1071
            V +S   G IA G  +  V     S   P+ +++         + +  +N   + SV + 
Sbjct: 190  VDIS-ERGLIATGFNNGTVQISELSTLRPLYNFES--------QHSMINNSNSIRSVKFS 240

Query: 1072 RRSDMVVAANSSGCIKVLQM 1091
             +  ++  A+ S     + +
Sbjct: 241  PQGSLLAIAHDSNSFGCITL 260

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 9e-09
 Identities = 31/329 (9%), Positives = 85/329 (25%), Gaps = 52/329 (15%)

Query: 782  ICSISFDRDEDHFAAAGVSKKIKIF-----EFNALFNDSVDVYYPAVEMSNRSKLSCVCW 836
            I S+S         +      +K++     +     + S   +     + +   L  +  
Sbjct: 17   IFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIER 74

Query: 837  NNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKR--------------AWSVDFSQV 882
            + +    +A+  + G +  +           I  +                 W     ++
Sbjct: 75   DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134

Query: 883  HPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYD 942
               +L +     +  +W  +                   + + S  L             
Sbjct: 135  LSHRLVATDVKGTTYIWKFHPFAD----------ESNSLTLNWSPTLELQG--------- 175

Query: 943  LRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTF 1002
                           +  + V   + G + T   +  +++ +L          +    + 
Sbjct: 176  ------TVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQH--SM 227

Query: 1003 SGHTNEKNFVGLSTADGYIACGSESNEVY---AYHRSLPMPITSYKFGSIDPISGKETDD 1059
              ++N    V  S     +A   +SN       Y       I S    +    +      
Sbjct: 228  INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287

Query: 1060 DNGLFVSSVCWRRRSDMVVAANSSGCIKV 1088
             +  +V S+ +    + + +A   G ++ 
Sbjct: 288  HSS-WVMSLSFNDSGETLCSAGWDGKLRF 315

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 3e-08
 Identities = 43/299 (14%), Positives = 83/299 (27%), Gaps = 57/299 (19%)

Query: 766  VQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEM 825
                +     ++   +        +    A    S  +  +           ++     +
Sbjct: 54   YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113

Query: 826  SN---RSKLSCVCW----NNYIKNYLASADYDGVVKLWDACTGQ---------------- 862
             +   +     + W    +  + + L + D  G   +W                      
Sbjct: 114  DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173

Query: 863  --TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN------INEKNSLATIKNIA 914
              TV   +   + A SVD S      +A+G ++ +V++        +    S  ++ N +
Sbjct: 174  QGTVESPMTPSQFATSVDIS--ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231

Query: 915  NVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV---------------LAGHEKA 959
            N       +    LLA         C  L        +                  H   
Sbjct: 232  NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 960  VSYVKFLDSGT-LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTA 1017
            V  + F DSG  L +A  D KL+ WD+K        T     T + H ++        A
Sbjct: 292  VMSLSFNDSGETLCSAGWDGKLRFWDVK--------TKERITTLNMHCDDIEIEEDILA 342

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 7e-09
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF-GR--FDSERALAAAMSDLRDRILPPSFLS 553
            + +PE         S ++Y+ G+   E+      +   +  A     +   + P SF  
Sbjct: 178 EFMAPEMYEEKY-DESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDK 236

Query: 554 ENPKEAG-FCLWQLHPEPLSRPTTREILQ 581
               E        +      R + +++L 
Sbjct: 237 VAIPEVKEIIEGCIRQNKDERYSIKDLLN 265

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 475 SPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG---RFDS 531
           S ++ +  +   T+   ++  +W A PE +S    T++S+++S G++ +E+     R   
Sbjct: 157 SRVLEDDPEATYTTSGGKIPIRWTA-PEAISYRKFTSASDVWSFGIVMWEVMTYGERPYW 215

Query: 532 ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
           E +    M  + D    P+ +          +     E   RP   +I+ 
Sbjct: 216 ELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS 265

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 2e-08
 Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF-GRF----DSERALAAAMSDLRDRILPPSF 551
            + +PE ++       ++++S+GV+ + L  G      D+++   A +S +        F
Sbjct: 181 EFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 240

Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSS 599
            + +     F    L  +P  R T ++ LQ       +    ++ LSS
Sbjct: 241 SNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPW---IKPKDTQQALSS 285

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR----FDSERALAAAMSDLRD-RILPPSF 551
            + + E L     TT S+++S GVL +EL  R    +         +  L+  R+L P +
Sbjct: 199 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEY 258

Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
             +   E    L   HP+   RP+  E++ 
Sbjct: 259 CPDPLYE--VMLKCWHPKAEMRPSFSELVS 286

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 3e-08
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRD--RILPPSF 551
            +ASPE  S    ++ S+++S GVL +E+F         R+ +  + D+    R+  P  
Sbjct: 167 KWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRL 226

Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
            S +  +           P  RP    +L+
Sbjct: 227 ASTHVYQ--IMNHCWKERPEDRPAFSRLLR 254

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.7 bits (127), Expect = 6e-08
 Identities = 16/218 (7%), Positives = 41/218 (18%), Gaps = 8/218 (3%)

Query: 841  KNYLASADYDGVVKLWDACTGQTVSHY--IEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
            ++Y+ +      + + D             +          +       A+ +   S+  
Sbjct: 1    RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 899  WNINEKNSLATIKNIANVCC------VQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV 952
             ++    +L  I                 S     L  + S       +           
Sbjct: 61   IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 953  LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012
             A         +     T++  + D        +      P            + E    
Sbjct: 121  DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 1013 GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSID 1050
                          S  +     +    I      +  
Sbjct: 181  AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR 218

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 6/80 (7%), Positives = 21/80 (26%), Gaps = 2/80 (2%)

Query: 832 SCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGS 891
                         +     V++ +D     ++   +      +SV+ S    + +  G 
Sbjct: 241 VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASI-KRVPLPHSYYSVNVSTDG-STVWLGG 298

Query: 892 DDCSVKLWNINEKNSLATIK 911
               +  ++         + 
Sbjct: 299 ALGDLAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 19/172 (11%), Positives = 46/172 (26%), Gaps = 4/172 (2%)

Query: 775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCV 834
           +    + +  +  D       A  + +   I  + A      DV     +  +   ++  
Sbjct: 142 WARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201

Query: 835 -CWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDD 893
                   +      Y   +   D  TG+     +      +         T+       
Sbjct: 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AY 259

Query: 894 CSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRN 945
             ++ +++ +  S+  +    +   V  S   S +   G A      YD   
Sbjct: 260 NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL-GGALGDLAAYDAET 310

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 9e-08
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 497 WYASPEELSG---GVCTTSSNIYSLGVLFFELF-GR--FDSERALAAAMSDLRDRILPPS 550
            + +PE +        +  S++Y+ G++ +EL  G+  + +       +  +    L P 
Sbjct: 171 LWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPD 230

Query: 551 FLSENPKE----AGFCLWQLHPEPLSRPTTREILQS 582
                              L  +   RP   +IL S
Sbjct: 231 LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS 266

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 312 GVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK 369
           G +L   L+    K + I+ + I RQ    +DY H + +   DLK ++  L +   VK
Sbjct: 87  GSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVK 144

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.6 bits (124), Expect = 1e-07
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTG---QTVSHYIEHEKRAWSVDFSQVHPTKLAS 889
                +     +ASA  D  +K+W+  T    +T+      E +   + ++      L S
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT---KQALVS 298

Query: 890 GSDDCSVKLWNI 901
            S +  +   N 
Sbjct: 299 ISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 19/257 (7%), Positives = 55/257 (21%), Gaps = 12/257 (4%)

Query: 782  ICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSV---DVYYPAVEMSNRSKLSCVCWNN 838
                       + A+  V   ++I++     +       V+   V+  +    S      
Sbjct: 61   TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV 120

Query: 839  YIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKL 898
                      +       +             + +                   +     
Sbjct: 121  GEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 180

Query: 899  WNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEK 958
            +          + ++         A +         +                 +A    
Sbjct: 181  FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 240

Query: 959  AVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV-GLSTA 1017
                    D   + +AS D  +K+W++        +T     T    T  ++   G+   
Sbjct: 241  VFGLTWSPDGTKIASASADKTIKIWNV--------ATLKVEKTIPVGTRIEDQQLGIIWT 292

Query: 1018 DGYIACGSESNEVYAYH 1034
               +   S +  +   +
Sbjct: 293  KQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 2e-04
 Identities = 14/161 (8%), Positives = 39/161 (24%), Gaps = 8/161 (4%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
                   + +   +  D                      +           +  AS   
Sbjct: 150 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG 209

Query: 893 DCSVKLWNINEKNSLATIKNIANVCCVQFSAH-------SSHLLAFGSADYRTYCYDLRN 945
           D ++ L+N  +       ++ +        +            +A  SAD     +++  
Sbjct: 210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 269

Query: 946 ARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDL 985
            +    +  G       +  +     LV+ S +  +   + 
Sbjct: 270 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 0.001
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 842 NYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNI 901
           + +   +    V      +      Y EH  +      S       ASG    +V++W+ 
Sbjct: 30  DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDT 87

Query: 902 NEKN 905
            +  
Sbjct: 88  TQTT 91

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFE-LFGR--FDSERALAAAMSDLRDRILPPSFLS 553
            Y SPE L+      SS++++LG + ++ + G   F +          ++     P    
Sbjct: 175 QYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFF 234

Query: 554 ENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE---FQEVCAEELL 597
              ++       L  +   R    E+           F+ V  E L 
Sbjct: 235 PKARD--LVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLH 279

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSERALAAAMSDLRDRILPPSFLSE 554
            + +PE L     +T S+++S G+L +E++  GR    R     +    ++         
Sbjct: 165 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDG 224

Query: 555 NPKEA-GFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEEL 596
            P           H +   RP+  ++ +     + + +   EL
Sbjct: 225 CPPAVYEVMKNCWHLDAAMRPSFLQLRE-----QLEHIKTHEL 262

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 312 GVNLREWLNARGHKGKRIEC-LYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY 370
             +L ++L +RG      +C L     +   ++Y         DL   +  + + N  K 
Sbjct: 85  KGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKV 144

Query: 371 I 371
            
Sbjct: 145 S 145

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFE-LFGR--FDSERALAAAMSDLRDRILPPSFLS 553
            Y SPE+  G      S++YSLG + +E L G   F  +  ++ A   +R+  +PPS   
Sbjct: 179 QYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARH 238

Query: 554 EN-PKEA-GFCLWQLHPEPLSRPTTREILQSE 583
           E    +     L  L   P +R  T   ++++
Sbjct: 239 EGLSADLDAVVLKALAKNPENRYQTAAEMRAD 270

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR----FDSERALAAAMSDLRDRILPPSFL 552
            + +PE L  G+ T  S+++S G+L +E+F      +      A     +++        
Sbjct: 231 KWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPF 290

Query: 553 SENPKEAGFCLWQLHPEPLSRPTTREILQ 581
               +           +   RP+   +  
Sbjct: 291 YATEEIYIIMQSCWAFDSRKRPSFPNLTS 319

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFE-LFGR--FDSERALAAAMSDLRDRILPPSFLS 553
            Y +PE L G     S + +S GVL +E L G+  F  +       S   D    P +L 
Sbjct: 168 DYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLE 227

Query: 554 ENPKEAGFCLWQLHPEPLSRPTTR-EILQSEVTNEFQEVCAEELLS 598
           +  K+    +     EP  R   R +I Q  +   F+E+  EEL  
Sbjct: 228 KEAKD--LLVKLFVREPEKRLGVRGDIRQHPL---FREINWEELER 268

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 11/163 (6%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF-GRF----DSERALAAAMSDLRDRILPPSF 551
            +A+PE   G      ++++S+GVL + L  G      +++      +      +   +F
Sbjct: 190 EFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAF 249

Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDDSESELLL 611
              +     F    L  +P +R T  + L+            +  + S         +  
Sbjct: 250 SGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAPGRDSQIPSSRYTKIRDSIKT 309

Query: 612 HFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVD 654
            +      +   +    +G I +  +  K   + + ++    D
Sbjct: 310 KY------DAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWD 346

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 312 GVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL--QSNQVK 369
           G  L E +    +K    E +   RQ+   + + H      LDLKP +      +SN++K
Sbjct: 107 GGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELK 166

Query: 370 YI 371
            I
Sbjct: 167 LI 168

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 17/102 (16%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSERALAAAMSDLRDRILPPSFLSE 554
            + +PE ++    ++ S+++S GVL +E F  G+        + ++ + ++       + 
Sbjct: 175 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAG 234

Query: 555 NPKEA-GFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEE 595
            P+E           +  +RP    +    + N + +V  E 
Sbjct: 235 CPREMYDLMNLCWTYDVENRPGFAAVEL-RLRNYYYDVVNEG 275

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 497 WYASPEELSGG-VCTTSSNIYSLGVLFFELF-GR--FDSERALAAAMSDLRDRILPPSFL 552
            Y +PE L          +++S G++   +  G   +D         SD +++    +  
Sbjct: 170 PYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPW 229

Query: 553 SENPKEA-GFCLWQLHPEPLSRPTTREILQSE 583
            +            L   P +R T  +I +  
Sbjct: 230 KKIDSAPLALLHKILVENPSARITIPDIKKDR 261

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 11/92 (11%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFEL-------FGRFDSERALAAAMSDLRDRILPP 549
            ++ PE L     ++ S+I++ GVL +E+       + RF +          L  R+  P
Sbjct: 166 RWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGL--RLYRP 223

Query: 550 SFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
              SE            H +   RPT + +L 
Sbjct: 224 HLASEKVYT--IMYSCWHEKADERPTFKILLS 253

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSERALAAAMSDLRDRILPPSFLSE 554
            + + E +   + T  S+++S GV  +EL   G    +   A+ +S + ++         
Sbjct: 178 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPI 237

Query: 555 NPKEA-GFCLWQLHPEPLSRPTTREILQ 581
              +     +     +  SRP  RE++ 
Sbjct: 238 CTIDVYMIMVKCWMIDADSRPKFRELII 265

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 5e-07
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 13/96 (13%)

Query: 497 WYASPEEL-----SGGVCTTSSNIYSLGVLFFEL------FGRFDSERALAAAMSDLRDR 545
           ++ +PE +             ++++SLG+   E+          +  R L          
Sbjct: 175 YWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPT 234

Query: 546 ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
           +  PS  S N K+  F    L     +R TT ++LQ
Sbjct: 235 LAQPSRWSSNFKD--FLKKCLEKNVDARWTTSQLLQ 268

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 8/60 (13%), Positives = 19/60 (31%)

Query: 312 GVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI 371
           G  +   +          +   + +Q +  ++Y H   +   DLK  +        +K  
Sbjct: 93  GGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLA 152

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (118), Expect = 5e-07
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 2/163 (1%)

Query: 825 MSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHP 884
           +S  S    +  +              V KL  A   +  +     E  + +   +    
Sbjct: 135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 194

Query: 885 TKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLR 944
                        + N  E     +             +  +  LA GS D     +++ 
Sbjct: 195 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 254

Query: 945 NARAPWCVL--AGHEKAVSYVKFLDSGTLVTASTDNKLKLWDL 985
                  ++  A    +V+ V +L+  T+V+A  D+ +K W++
Sbjct: 255 KPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 14/144 (9%), Positives = 39/144 (27%), Gaps = 3/144 (2%)

Query: 870  HEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI--ANVCCVQFSAHSSH 927
            H K   ++  S      L S   +  +  W+I+   S     ++    +  ++ ++    
Sbjct: 11   HNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 928  LLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKR 987
                     +          +   V          +     G +  A+    + ++   +
Sbjct: 70   FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129

Query: 988  TSHTGPSTNACSLTFSGHTNEKNF 1011
             +    S N+  +  S        
Sbjct: 130  LTEVPISYNSSCVALSNDKQFVAV 153

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 828 RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE-HEKRAWSVDFSQVHPTK 886
              ++ +  +      L SAD +G +  WD  TG +   + + H      +  +      
Sbjct: 12  NKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-- 68

Query: 887 LASGSDDCSVKLWNINEKN 905
           L + S D  +K+       
Sbjct: 69  LFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 6/101 (5%)

Query: 952  VLAGHEKAVSYVKF-LDSGTLVTASTDNKLKLWDLK-----RTSHTGPSTNACSLTFSGH 1005
            V  GH KA++ +    D  TL +A  +  +  WD+      R      +T    +  +  
Sbjct: 7    VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

Query: 1006 TNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKF 1046
             +              A GS  +   A    L         
Sbjct: 67   GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (117), Expect = 1e-06
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 832 SCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKL-ASG 890
             +      ++          V + DA TG+ +    E      S++ SQ     L A  
Sbjct: 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL-AKFEMGHEIDSINVSQDEKPLLYALS 319

Query: 891 SDDCSVKLWNINEKNSLATIKNI 913
           + D ++ + +      L ++  +
Sbjct: 320 TGDKTLYIHDAESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 7e-05
 Identities = 24/274 (8%), Positives = 60/274 (21%), Gaps = 34/274 (12%)

Query: 838  NYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPT--------KLAS 889
            + + + +A  +    V+++D  T    +     +   + V       +            
Sbjct: 65   STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124

Query: 890  GSDDCSVKLWNINEKNSLATIK--------NIANVCCVQFSAHSSHLLAFGSADYRTYCY 941
             S   +V + ++  K     +           A           S        +      
Sbjct: 125  FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184

Query: 942  DLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLT 1001
                       L  H           +G LV  +   K+   DL                
Sbjct: 185  HTEVFHPEDEFLINH-----PAYSQKAGRLVWPTYTGKIHQIDLSSGDAK------FLPA 233

Query: 1002 FSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGS----IDPISGKET 1057
                T  +   G             + +                       +D  +G+  
Sbjct: 234  VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 293

Query: 1058 DD-DNGLFVSSVCWRR--RSDMVVAANSSGCIKV 1088
               + G  + S+   +  +  +   +     + +
Sbjct: 294  AKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 327

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 28/263 (10%), Positives = 62/263 (23%), Gaps = 32/263 (12%)

Query: 839  YIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKR--AWSVDFSQV-----HPTKLASGS 891
            Y+ +  A         + D   G+ +             + D S +       +++A G 
Sbjct: 17   YVNDP-AHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGE 75

Query: 892  DDCSVKLWNINEKNSLATIKN--------IANVCCVQFSAHSSHLLAFGSADYRTYCYDL 943
                V++++       A I+                  +     LL +  +         
Sbjct: 76   RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD 135

Query: 944  RNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS 1003
               +A   +L   +    +       T      D  L            P      +   
Sbjct: 136  LEGKAFKRMLDVPDCYHIFPT--APDTFFMHCRDGSLAKVAFGTEGT--PEITHTEVFHP 191

Query: 1004 GHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGL 1063
                  N    S   G +   + + +++    S      S     +  +           
Sbjct: 192  EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS------SGDAKFLPAVEALTEA----- 240

Query: 1064 FVSSVCWRRRSDMVVAANSSGCI 1086
               +  WR      VA + +   
Sbjct: 241  -ERADGWRPGGWQQVAYHRALDR 262

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 14/127 (11%)

Query: 475 SPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSE 532
           S L++             +    + +PE L+    +  S++++ GVL +E+   G     
Sbjct: 162 SRLMTGDTYTAHAGAKFPI---KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP 218

Query: 533 RALAAAMSDLRDRILPPSFLSENPKEA-GFCLWQLHPEPLSRPTTREILQ--------SE 583
               + + +L ++          P++            P  RP+  EI Q        S 
Sbjct: 219 GIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESS 278

Query: 584 VTNEFQE 590
           +++E ++
Sbjct: 279 ISDEVEK 285

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFE-LFGRF----DSERALAAAMSDLRDRILPPSF 551
            Y +PE     V +T+++++SLG L +  L G      ++ + +   + +        +F
Sbjct: 168 EYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAF 227

Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDDSESELL 610
              + +   F    L  E  SR T  E LQ     +  E  + +++ ++        L+
Sbjct: 228 KEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKIERVSTKVIRTLKHRRYYHTLI 286

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRD--RILPPSF 551
            + +PE ++ G  T  S+++S G+L  E+                + +L    R++ P  
Sbjct: 175 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN 234

Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
             E   +           P  RPT   +  
Sbjct: 235 CPEELYQ--LMRLCWKERPEDRPTFDYLRS 262

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 11/119 (9%)

Query: 497 WYASPEELSG---GVCTTSSNIYSLGVLFFELFGRF-----DSERALAAAMSDLRDRILP 548
           ++ +PE +     G      +++SLG+   EL  R       +  +    ++      L 
Sbjct: 176 YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQ 235

Query: 549 PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE-VTNEFQEVCAEELLSSIDQDDSE 606
               SE  +   F    L   P  RPT+  +L+   V  E       +L+        E
Sbjct: 236 SGHWSEYFRN--FVDSCLQKIPQDRPTSEVLLKHRFVLRERPPTVIMDLIQRTKDAVRE 292

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSERALAAAMSDLRDRILPPSFLSE 554
            + +PE    G  T  S+++S G+L  EL   GR      +   + D  +R        E
Sbjct: 179 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE 238

Query: 555 NPKEA-GFCLWQLHPEPLSRPTTREILQ 581
            P+            EP  RPT   +  
Sbjct: 239 CPESLHDLMCQCWRKEPEERPTFEYLQA 266

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFE-LFGR--FDSERALAAAMSDLRDRILPPSFLS 553
            Y +PE +S      S + +S G+L +E L G   F     +      L   +  P F +
Sbjct: 166 DYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFN 225

Query: 554 ENPKEAGFCLWQLHPE---PLSRPTTREILQSEVTNEFQEVCAEELLS 598
           E+ K+    L            +  T ++        F+EV  E+LLS
Sbjct: 226 EDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPW---FKEVVWEKLLS 270

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.0 bits (115), Expect = 2e-06
 Identities = 20/260 (7%), Positives = 51/260 (19%), Gaps = 11/260 (4%)

Query: 841  KNYLASADYDGVVKLWDACTGQTV-SHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW 899
              Y+   +Y   + + D  +     S  +  +    +   +  + T     +    +   
Sbjct: 8    HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67

Query: 900  NINEKNSLATIKNI-------ANVCCVQFSAHSSHLLAFGSAD---YRTYCYDLRNARAP 949
            +++   +               ++     S     + A  +        Y          
Sbjct: 68   DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF 127

Query: 950  WCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009
                    K V          L+ A+ D  L +           +          + N K
Sbjct: 128  STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRK 187

Query: 1010 NFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVC 1069
             +        +            Y  +           +         D   G   +   
Sbjct: 188  GYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 247

Query: 1070 WRRRSDMVVAANSSGCIKVL 1089
                        S      +
Sbjct: 248  ADLTELYFTGLRSPKDPNQI 267

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.4 bits (111), Expect = 6e-06
 Identities = 16/127 (12%), Positives = 32/127 (25%), Gaps = 2/127 (1%)

Query: 818 VYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSV 877
            +         S L  +      K   A+AD        D  TG+T +         +  
Sbjct: 197 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 256

Query: 878 DFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYR 937
                       G  +  +  +++ ++  +          CV F      L   G     
Sbjct: 257 GLRSPKDPNQIYGVLNR-LAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL-GGTFND 314

Query: 938 TYCYDLR 944
              ++  
Sbjct: 315 LAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 2/79 (2%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
                   K+          +  +D    + +      +   + V F +    KL  G  
Sbjct: 254 YFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLI-KAANLDHTYYCVAFDK-KGDKLYLGGT 311

Query: 893 DCSVKLWNINEKNSLATIK 911
              + ++N +    +  IK
Sbjct: 312 FNDLAVFNPDTLEKVKNIK 330

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFE-LFGRF----DSERALAAAMSDLRDRILPPSF 551
            +A+PE +        ++++++GVL +  L G      + +      +          +F
Sbjct: 193 EFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAF 252

Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
            S +P+   F    L  EP  R T  + L+
Sbjct: 253 SSVSPEAKDFIKNLLQKEPRKRLTVHDALE 282

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFE-LFGR--FDSERALAAAMSDLRDRILPPSFLS 553
            Y +PE L+    + + + +S+GV+ +  L G   F  E         L+      S   
Sbjct: 174 GYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYW 233

Query: 554 EN-PKEA-GFCLWQLHPEPLSRPTTREILQ 581
           ++    A  F    +  +P  R T  + LQ
Sbjct: 234 DDISDSAKDFIRHLMEKDPEKRFTCEQALQ 263

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 18/146 (12%), Positives = 34/146 (23%), Gaps = 11/146 (7%)

Query: 445 DINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEEL 504
           D+   +                FG   K            +            YAS    
Sbjct: 128 DVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENK--NLTGTARYASINTH 185

Query: 505 SGGVCTTSSNIYSLGVLFFE-LFGRF-------DSERALAAAMSDLRDRILPPSFLSENP 556
            G   +   ++ SLG +      G          ++R     +S+ +            P
Sbjct: 186 LGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYP 245

Query: 557 KEA-GFCLWQLHPEPLSRPTTREILQ 581
            E   +  +        +P    + Q
Sbjct: 246 SEFATYLNFCRSLRFDDKPDYSYLRQ 271

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 15/108 (13%)

Query: 497 WYASPEELSGG-VCTTSSNIYSLGVLFFE-LFGR--FDSERALAAAMSDLRDRILPPSFL 552
            Y+ PE +        S+ ++SLG+L ++ + G   F+ +  +      +R ++     +
Sbjct: 174 VYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEI------IRGQVFFRQRV 227

Query: 553 SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSI 600
           S   +      W L   P  RPT  EI         Q+V   +  + I
Sbjct: 228 SSECQH--LIRWCLALRPSDRPTFEEIQNHPW---MQDVLLPQETAEI 270

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF---GRFDSERALAAAMSDLRDRILPPSFLS 553
            + + E L+  V TT+S+++S GVL +E+    G        A     L         L+
Sbjct: 191 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLN 250

Query: 554 ENPKEAGFCLWQLHPEPLSRPTTREILQS 582
            + +           +P  RP+  +IL S
Sbjct: 251 CDDEVYDLMRQCWREKPYERPSFAQILVS 279

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 5e-06
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF---GRFDSERALAAAMSDLRDRILPPSFLS 553
            + +PE L   + T  S+++S GVL +E+F   G       +      L++        +
Sbjct: 202 KWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSN 261

Query: 554 ENPKEAGFCLWQLHPEPLSRPTTREILQ 581
              +         H  P  RPT +++++
Sbjct: 262 CTNELYMMMRDCWHAVPSQRPTFKQLVE 289

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR------FDSERALAAAMSDLRDRILPPS 550
            + +PE +   V T  S+++S G+  +ELF             +    M     R+L P 
Sbjct: 212 KWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPE 271

Query: 551 FLSENPKEAGFCLWQLHPEPLSRPTTREILQ------SEVTN 586
                  +          +PL RPT ++I+Q      SE TN
Sbjct: 272 HAPAEMYD--IMKTCWDADPLKRPTFKQIVQLIEKQISESTN 311

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRILPPSFLS 553
            +  PE +     TT S++++ GV+ +E+F          A    +  +RD  +     +
Sbjct: 207 RWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPEN 266

Query: 554 ENPKEAGFCLWQLHPEPLSRPTTREILQ 581
              +            P  RP+   I +
Sbjct: 267 CPLELYNLMRLCWSKLPADRPSFCSIHR 294

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 6e-06
 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 4/89 (4%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR----FDSERALAAAMSDLRDRILPPSFL 552
            + +PE L     + +S+ +  GV  +E+F      +             ++    P   
Sbjct: 179 AWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPE 238

Query: 553 SENPKEAGFCLWQLHPEPLSRPTTREILQ 581
                     +     +P  RPT   +  
Sbjct: 239 DCPQDIYNVMVQCWAHKPEDRPTFVALRD 267

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 6e-06
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRI------L 547
           +Y +PE L       S +++SLGV+ + L      F S   L A    ++ RI       
Sbjct: 178 YYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL-AISPGMKTRIRMGQYEF 236

Query: 548 PPSFLSENPKEA-GFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSI------ 600
           P    SE  +E        L  EP  R T  E +      +  +V    L +S       
Sbjct: 237 PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDK 296

Query: 601 DQDDSESELLLHFLISLEEEKQNQASK 627
           ++ +   E +   L ++  + +    K
Sbjct: 297 ERWEDVKEEMTSALATMRVDYEQIKIK 323

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 312 GVNLREWLNARGHKG-KRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY 370
           G  L   +  RG +     E   I + I   + Y H+  +   D+KP +           
Sbjct: 93  GGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAI 152

Query: 371 I 371
           +
Sbjct: 153 L 153

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.3 bits (111), Expect = 7e-06
 Identities = 25/264 (9%), Positives = 66/264 (25%), Gaps = 30/264 (11%)

Query: 844  LASADYDGVVKLWDACTGQTV-------SHYIEHEKRAWSVDFSQVHPTKLASGSDDCSV 896
             A       V+++D  T   +       +       R   +         L       + 
Sbjct: 89   SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148

Query: 897  KLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC----- 951
               ++      +  +   +  C      ++     GS        DL  A A        
Sbjct: 149  AGLSV---PGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205

Query: 952  VLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011
                   +    +    G LV  +  + +   D+     T            G+ + +  
Sbjct: 206  CTGAQNCSSQAAQANYPGMLV-WAVASSILQGDIPAAGAT------MKAAIDGNESGRKA 258

Query: 1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGS----IDPISGKETDD-DNGLFVS 1066
                +A   +    ++ +      ++    +          +    G+ +    NG    
Sbjct: 259  DNFRSAGFQMVAKLKNTDG-IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSD 317

Query: 1067 SVCWRR--RSDMVVAANSSGCIKV 1088
            ++   +   SD    +  +  + +
Sbjct: 318  AIIAAQDGASDNYANSAGTEVLDI 341

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.4 bits (88), Expect = 0.004
 Identities = 7/69 (10%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 844 LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ-VHPTKLASGSDDCSVKLWNIN 902
            +            A  GQT    I +   + ++  +Q       A+ +    + +++  
Sbjct: 287 RSCLAAAENTSSVTASVGQTS-GPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345

Query: 903 EKNSLATIK 911
                ++++
Sbjct: 346 SDQDQSSVE 354

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (110), Expect = 7e-06
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 474 SSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR----F 529
           S  L  +T+    TS         + +PE +     T++S+++S G++ +E+       +
Sbjct: 175 SRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPY 234

Query: 530 DSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS 582
                     +  +D  LPP  +          L     +   RP   +I+ +
Sbjct: 235 WDMTNQDVINAIEQDYRLPPP-MDCPSALHQLMLDCWQKDRNHRPKFGQIVNT 286

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 6/101 (5%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF---GRFDSERALAAAMSDLRDRILPPSFLS 553
            + SPE L  GV TT S+++S GV+ +E+     +     +    +  + +  L     +
Sbjct: 200 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN 259

Query: 554 ENPKEAGFCLWQLHPEPLSRPTTREI---LQSEVTNEFQEV 591
                           P  RP+  EI   ++ E+   F+EV
Sbjct: 260 CPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREV 300

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR----FDSERALAAAMSDLRDRILPPSFL 552
            + +PE +   V T  S+++S GVL +E+F      +   +        L++     +  
Sbjct: 201 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPD 260

Query: 553 SENPKEAGFCLWQLHPEPLSRPTTREILQ 581
              P+     L   H EP  RPT  E+++
Sbjct: 261 YTTPEMYQTMLDCWHGEPSQRPTFSELVE 289

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 16/147 (10%)

Query: 496 KWYASPEELSGGVCTTSSNIYSLGVLFFELF-GR--FDSERALAAAMSDLRDRILPPSFL 552
           + Y SPE L G   +  S+I+S+G+   E+  GR       A    +          +  
Sbjct: 167 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAET 226

Query: 553 SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVC-------AEELLSSIDQDDS 605
              P+  G  L     +        E+L   V     ++         ++ ++     + 
Sbjct: 227 PPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNP 286

Query: 606 E-----SELLLH-FLISLEEEKQNQAS 626
                  +L++H F+   + E+ + A 
Sbjct: 287 AERADLKQLMVHAFIKRSDAEEVDFAG 313

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 312 GVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI 371
              L ++L  +    ++ E   I R ++ ++   H   +   DLKP +  L     +K  
Sbjct: 94  KGELFDYLTEKVTLSEK-ETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLT 152

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFE-LFGRF----DSERALAAAMSDLRDRILPPSF 551
                   +        +++S GV+ +  L G        +  +   +     +   P +
Sbjct: 180 IIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEW 239

Query: 552 LSENPKEAGFCLWQLHPEPLSRPTTREILQ 581
              +          L  +P  R T  E L 
Sbjct: 240 DDYSDTVKDLVSRFLVVQPQKRYTAEEALA 269

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 29/134 (21%)

Query: 477 LVSNTAQQQSTSVSEQLEEKWYASPEELSGGV------CTTSSNIYSLGVLFFELFGR-- 528
              +       + + ++  K Y +PE L   +          ++IY++G++F+E+  R  
Sbjct: 157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCS 216

Query: 529 -----------FDSERALAAAMSDLRDRILPPSFLSENPKEAGFC----------LWQLH 567
                      +        ++ ++R  +         P     C              +
Sbjct: 217 IGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWY 276

Query: 568 PEPLSRPTTREILQ 581
               +R T   I +
Sbjct: 277 ANGAARLTALRIKK 290

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 23/186 (12%), Positives = 53/186 (28%), Gaps = 17/186 (9%)

Query: 814 DSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLA-SADYDGVVKLWDACTGQTVSHYIEHEK 872
           +S  V     +   +        +  + N  + +    G + L D  + + V   I+   
Sbjct: 9   ESWKVLVKPEDRPKK-----QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-IDTGY 62

Query: 873 RAWSVDFSQVHPTKLASGSDDCSVKLWNIN--EKNSLATIKNIAN----VCCVQFSAHSS 926
                  S      L     D  + + ++   E   +A IK                   
Sbjct: 63  AVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR 121

Query: 927 HLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSG--TLVTASTDNKLKLWD 984
           + +A G+     +         P  +++     V    +        + AS ++   + +
Sbjct: 122 YTIA-GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180

Query: 985 LKRTSH 990
           +K T  
Sbjct: 181 VKETGK 186

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.6 bits (91), Expect = 0.002
 Identities = 28/222 (12%), Positives = 60/222 (27%), Gaps = 14/222 (6%)

Query: 867  YIEHEKRAWSVDFSQVHPTKLA--SGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAH 924
             ++ E R        +    L   +  D   + L + + K  +  I     V   + SA 
Sbjct: 14   LVKPEDRPKKQLND-LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA- 71

Query: 925  SSHLLAFGSADYRTYCYDLRNAR----APWCVLAGHEKAVSYVKFLDSGT--LVTASTDN 978
            S   L     D R    DL        A   +        S           +  A    
Sbjct: 72   SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP 131

Query: 979  KLKLWDLKRT----SHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034
            +  + D +        +       + T+         +       +I    E+ +V   +
Sbjct: 132  QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191

Query: 1035 RSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDM 1076
                  +T    G+   ++    D  +  F+++     +  +
Sbjct: 192  YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAV 233

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 22/186 (11%), Positives = 53/186 (28%), Gaps = 17/186 (9%)

Query: 814 DSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLA-SADYDGVVKLWDACTGQTVSHYIEHEK 872
           +S  V+    +   +        +  ++N  + +    G + L D  T +  +  ++   
Sbjct: 9   ESWKVHVAPEDRPTQ-----QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTV-LDTGY 62

Query: 873 RAWSVDFSQVHPTKLASGSDDCSVKLWNIN--EKNSLATIKNIAN----VCCVQFSAHSS 926
                  S      L     D  V + ++   E  ++A IK  +                
Sbjct: 63  AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121

Query: 927 HLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSG--TLVTASTDNKLKLWD 984
           + +A      +    D      P  + +         ++        + AS      + +
Sbjct: 122 YAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 180

Query: 985 LKRTSH 990
           +K T  
Sbjct: 181 VKETGK 186

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (93), Expect = 0.001
 Identities = 23/208 (11%), Positives = 50/208 (24%), Gaps = 24/208 (11%)

Query: 891  SDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNAR--- 947
             D   + L + +       +     V   + SA S   L     D +    DL       
Sbjct: 39   RDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTT 97

Query: 948  -APWCVLAGHEKAVSYVKFLDSGTL--VTASTDNKLKLWDLKRTS--HTGPSTNACSLTF 1002
             A   + +      +              A    +  + D +         +        
Sbjct: 98   VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 157

Query: 1003 SGHTNEKNFVGLSTADG--YIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDD 1060
              H   +    L++     +I    E+ ++     +             D  + K T+  
Sbjct: 158  EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT-------------DLNNLKTTEIS 204

Query: 1061 NGLFVSSVCWRRRSDMVVAANSSGCIKV 1088
               F+            + A ++    V
Sbjct: 205  AERFLHDGGLDGSHRYFITAANARNKLV 232

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 28/113 (24%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR---------------------------F 529
           WY +PE L      T  +++S+G +F E+F R                           +
Sbjct: 180 WYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDW 239

Query: 530 DSERALAAAMSDLRDRILPPSFLSENPKEA-GFCLWQLHPEPLSRPTTREILQ 581
             + AL       +       F+++  +      L  L   P  R +    L 
Sbjct: 240 PRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 292

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELF--GRFDSERALAAAMSDLRDRILPPSFLSE 554
            + +PE ++    T++S+++  GV  +E+   G    +      +    +          
Sbjct: 174 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPN 233

Query: 555 NPKEA-GFCLWQLHPEPLSRPTTREILQ 581
            P             +P  RP   E+  
Sbjct: 234 CPPTLYSLMTKCWAYDPSRRPRFTELKA 261

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 7/63 (11%), Positives = 18/63 (28%)

Query: 889 SGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA 948
           + S+  ++ + ++      ATI   +N      S   + +    +        D      
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 949 PWC 951
              
Sbjct: 67  IAT 69

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 2/109 (1%)

Query: 843 YLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNIN 902
           Y+A+++    + + D  + +  +  I           S        + +    V + +  
Sbjct: 5   YIANSE-SDNISVIDVTSNKVTAT-IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 903 EKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC 951
             N +AT+   ++   V  S     +     A       D  +      
Sbjct: 63  TNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 8/79 (10%), Positives = 19/79 (24%)

Query: 833 CVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD 892
                   K Y+ + D               ++  I        +  +        + S 
Sbjct: 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF 264

Query: 893 DCSVKLWNINEKNSLATIK 911
             +V + +       AT+ 
Sbjct: 265 CNTVSVIDTATNTITATMA 283

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 9/94 (9%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFE-LFGRFDSERALAAAMSDLRDRIL-------P 548
            Y S     G   +   ++ +LG +F   L G    +   AA      +RI         
Sbjct: 178 RYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPL 237

Query: 549 PSFLSENPKE-AGFCLWQLHPEPLSRPTTREILQ 581
               +  P+E   +  +  +    + P    +  
Sbjct: 238 RELCAGFPEEFYKYMHYARNLAFDATPDYDYLQG 271

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 10/115 (8%), Positives = 29/115 (25%), Gaps = 7/115 (6%)

Query: 843 YLASADYDGVVKLWDACT--GQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN 900
           Y+AS +    + +W+       T++  ++   +   +  S            +  V  + 
Sbjct: 7   YIASPE-SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 901 INEKNSLATIKNI----ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC 951
           I   +   T         ++  +        +              L +      
Sbjct: 66  IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (92), Expect = 0.001
 Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 497 WYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRILPPSFLS 553
              +PE +       + + ++LGVL +E+      F +++ +      +  ++  PS  S
Sbjct: 203 EALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFS 262

Query: 554 ENPKEAGFCLWQLHPE---PLSRPTTREILQ 581
            + K+    L Q+         +    +I  
Sbjct: 263 SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (88), Expect = 0.004
 Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 311 HGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY 370
           +G +L   L+  G   +  +  +   +I+  +++ H + V + DLKP++  L +   V+ 
Sbjct: 90  NGGDLHYHLSQHGVFSEA-DMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRI 148

Query: 371 IGPIIQKETLESASLDIPHSENY 393
               +  +  +        +  Y
Sbjct: 149 SDLGLACDFSKKKPHASVGTHGY 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1092
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.98
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.98
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.97
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.8
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.78
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.7
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.7
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.66
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.62
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.58
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.41
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.37
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.28
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.22
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.07
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.06
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.9
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.76
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.76
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.69
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.67
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.65
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.65
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.65
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.59
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.56
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.51
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.48
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.45
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.44
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.39
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.15
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.95
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.93
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.56
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.54
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.34
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.06
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.9
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.62
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.05
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.89
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.72
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.6
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.47
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.36
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.29
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.11
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.0
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.15
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.65
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.2
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.83
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.59
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.2
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.97
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.78
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.39
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.18
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	85.07
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	83.81
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	83.74
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	81.87
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.74
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	80.44

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-41  Score=372.47  Aligned_cols=252  Identities=14%  Similarity=0.077  Sum_probs=190.2

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ||.|+||++...    ..++.+|.|+..............++..++...+||||+.+++....+...+   
T Consensus         7 y~~~~~lG~G~fg~V~~~~~~----~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~---   79 (271)
T d1nvra_           7 WDLVQTLGEGAYGEVQLAVNR----VTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQY---   79 (271)
T ss_dssp             EEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEE---
T ss_pred             eEEEEEEecCcCeEEEEEEEC----CCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeE---
Confidence            4444444  478999999762    2356677776533222222233456778889999999999888776554444   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+||||+||+|.++|...+ .+++.+++.|++||+.||+|||++||+||||||+||||+.++.+||+
T Consensus        80 -------------ivmEy~~gg~L~~~l~~~~-~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~  145 (271)
T d1nvra_          80 -------------LFLEYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKIS  145 (271)
T ss_dssp             -------------EEEECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEEC
T ss_pred             -------------EEEeccCCCcHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEc
Confidence                         3899999999999997654 57888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.+.....                                                                   
T Consensus       146 DFG~a~~~~~~~~-------------------------------------------------------------------  158 (271)
T d1nvra_         146 DFGLATVFRYNNR-------------------------------------------------------------------  158 (271)
T ss_dssp             CCTTCEECEETTE-------------------------------------------------------------------
T ss_pred             cchhheeeccCCc-------------------------------------------------------------------
Confidence            9999987541100                                                                   


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHHHHHHcCC--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvll~ell~~--  528 (1092)
                                                        ....+..+||+.|||||++.+..+ +.++|||||||+||||++|  
T Consensus       159 ----------------------------------~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~  204 (271)
T d1nvra_         159 ----------------------------------ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGEL  204 (271)
T ss_dssp             ----------------------------------ECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------------------------cccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCC
Confidence                                              011225689999999999998776 6889999999999999985  


Q ss_pred             -CCcHHHHHHHHHhcc-ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          529 -FDSERALAAAMSDLR-DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                       |.............. ....++.+...++++.+|+.+||++||.+|||++|+|+||||++
T Consensus       205 pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hpwf~~  265 (271)
T d1nvra_         205 PWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNK  265 (271)
T ss_dssp             SCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTC
T ss_pred             CCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCc
Confidence             433333222222222 23334445566889999999999999999999999999999975

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-41  Score=366.53  Aligned_cols=248  Identities=15%  Similarity=0.108  Sum_probs=190.9

Q ss_pred             hHHHhhhc--cccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.+  ||+|+||++...    ..+..+|.|+.....  .........++..++...+||||+.+++....+...+
T Consensus         7 dy~i~~~iG~G~fg~Vy~~~~~----~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~   82 (263)
T d2j4za1           7 DFEIGRPLGKGKFGNVYLAREK----QSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVY   82 (263)
T ss_dssp             GEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             HeEEEEEEecCCCcEEEEEEEC----CCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEE
Confidence            45554444  478999999863    235566776642211  1112233456778889999999999888766544444


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+||||+||+|.++|...+ .+++.+++.|++||++||+|||++||+||||||+||||+.++.+
T Consensus        83 ----------------ivmEy~~~g~L~~~l~~~~-~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~  145 (263)
T d2j4za1          83 ----------------LILEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGEL  145 (263)
T ss_dssp             ----------------EEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCE
T ss_pred             ----------------EEEeecCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCE
Confidence                            3899999999999998765 47787999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.....                                                                  
T Consensus       146 kl~DFG~a~~~~~~------------------------------------------------------------------  159 (263)
T d2j4za1         146 KIADFGWSVHAPSS------------------------------------------------------------------  159 (263)
T ss_dssp             EECCCCSCSCCCCC------------------------------------------------------------------
T ss_pred             eecccceeeecCCC------------------------------------------------------------------
Confidence            99999998653310                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                             .....+||+.|||||++.+..|+.++|||||||+||||++|
T Consensus       160 ---------------------------------------~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G  200 (263)
T d2j4za1         160 ---------------------------------------RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG  200 (263)
T ss_dssp             ---------------------------------------CCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHS
T ss_pred             ---------------------------------------cccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcC
Confidence                                                   01145799999999999999999999999999999999985


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                         |.+...........+.....|  ...++++.+|+.+||++||.+|||++|+|+||||...
T Consensus       201 ~~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~~L~~dp~~R~t~~eil~hp~~~~~  261 (263)
T d2j4za1         201 KPPFEANTYQETYKRISRVEFTFP--DFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITAN  261 (263)
T ss_dssp             SCTTCCSSHHHHHHHHHTTCCCCC--TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHcCCCCCC--ccCCHHHHHHHHHHccCCHhHCcCHHHHHcCcCcCCc
Confidence               555444333333333322222  2357889999999999999999999999999999753

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-40  Score=368.73  Aligned_cols=249  Identities=14%  Similarity=0.112  Sum_probs=194.1

Q ss_pred             HHHhhh--ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTT--LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~--~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.  .||.|+||++...    ..++.+|.|++.-.. ........++..+++..+||||+.+++....+...+   
T Consensus        22 Y~~~~~iG~G~fg~Vy~a~~~----~~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~---   93 (293)
T d1yhwa1          22 YTRFEKIGQGASGTVYTAMDV----ATGQEVAIRQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELW---   93 (293)
T ss_dssp             BCSCEECCCSSSCEEEEEEBT----TTCCEEEEEEEEGGG-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE---
T ss_pred             cEEEEEEecCcCcEEEEEEEC----CCCCEEEEEEEeccc-ChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEE---
Confidence            444443  4578999999752    235667777653222 223345667788899999999999888766554444   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+||||+||+|.+++...  .+++.+++.|++||+.||+|||++||+||||||+||||+.+|.+||+
T Consensus        94 -------------ivmEy~~gg~L~~~~~~~--~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~  158 (293)
T d1yhwa1          94 -------------VVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLT  158 (293)
T ss_dssp             -------------EEEECCTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEEC
T ss_pred             -------------EEEEecCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeec
Confidence                         389999999999998764  57888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.+....                                                                    
T Consensus       159 DFG~a~~~~~~~--------------------------------------------------------------------  170 (293)
T d1yhwa1         159 DFGFCAQITPEQ--------------------------------------------------------------------  170 (293)
T ss_dssp             CCTTCEECCSTT--------------------------------------------------------------------
T ss_pred             cchhheeecccc--------------------------------------------------------------------
Confidence            999998754100                                                                    


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---  528 (1092)
                                                         ......+||+.|||||++.+..|+.++|||||||+||||++|   
T Consensus       171 -----------------------------------~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~P  215 (293)
T d1yhwa1         171 -----------------------------------SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP  215 (293)
T ss_dssp             -----------------------------------CCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             -----------------------------------ccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCC
Confidence                                               001246799999999999999999999999999999999986   


Q ss_pred             CCcHHHHHHHHHhccccCC-CCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 FDSERALAAAMSDLRDRIL-PPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |.................. ++.....++.+.+||.+||++||.+|||+.|+|+||||...
T Consensus       216 f~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~Hp~~~~~  276 (293)
T d1yhwa1         216 YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIA  276 (293)
T ss_dssp             TTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTTCGGGGGC
T ss_pred             CCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhCCC
Confidence            5544444444444443332 22334567889999999999999999999999999999753

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=370.04  Aligned_cols=246  Identities=13%  Similarity=0.067  Sum_probs=190.1

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..||+|.||+|...    ..+..+|.|+.... .........++..++...+||||+.+++....+...+          
T Consensus        21 G~G~fg~Vy~~~~~----~~~~~vAvK~i~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~----------   85 (288)
T d2jfla1          21 GDGAFGKVYKAQNK----ETSVLAAAKVIDTK-SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLW----------   85 (288)
T ss_dssp             EEETTEEEEEEEET----TTCCEEEEEEEECS-SSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEE----------
T ss_pred             eeCCCcEEEEEEEC----CCCeEEEEEEECcC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEE----------
Confidence            34579999999862    23556677665322 2333345566788889999999999888766554444          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+||||+||+|.+++...+..+++.+++.|++||+.||+|||++||+||||||+||||+.++.+||+|||+++.
T Consensus        86 ------lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~  159 (288)
T d2jfla1          86 ------ILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAK  159 (288)
T ss_dssp             ------EEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             ------EEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhc
Confidence                  38999999999999877666788889999999999999999999999999999999999999999999999876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      .....                                                                           
T Consensus       160 ~~~~~---------------------------------------------------------------------------  164 (288)
T d2jfla1         160 NTRTI---------------------------------------------------------------------------  164 (288)
T ss_dssp             CHHHH---------------------------------------------------------------------------
T ss_pred             cCCCc---------------------------------------------------------------------------
Confidence            43100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCccccc-----CCCCCccccchhhhHHHHHHcCC---CC
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELS-----GGVCTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~-----~~~~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                  ......+||+.|||||++.     +..|+.++|||||||+||||+++   |.
T Consensus       165 ----------------------------~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~  216 (288)
T d2jfla1         165 ----------------------------QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHH  216 (288)
T ss_dssp             ----------------------------HHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ----------------------------ccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCC
Confidence                                        0112567999999999984     46689999999999999999986   44


Q ss_pred             cHHHHHHHHHhccccCC-CCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          531 SERALAAAMSDLRDRIL-PPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       531 ~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ................. .+.....++++.+||.+||++||.+|||+.|||+||||+..
T Consensus       217 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~hp~~~~~  275 (288)
T d2jfla1         217 ELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVD  275 (288)
T ss_dssp             TSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGCCC
T ss_pred             CCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCC
Confidence            43333333333333221 22234567889999999999999999999999999999753

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=341.76  Aligned_cols=284  Identities=12%  Similarity=0.197  Sum_probs=245.1

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          777 NSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      .|...|++++|+|+|++||||+ |+.|+|||+.......  ........+|.+.|.+++|+|+ +++|++|+.||+|++|
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~--~~~~~~~~~h~~~I~~v~~s~d-g~~l~s~~~dg~i~iw  124 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIW  124 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--CSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc--eeEEeeecCCCCcEEEEEEcCC-CCEEEEeecccccccc
Confidence            7999999999999999999987 8999999987532111  1112234568899999999998 8999999999999999


Q ss_pred             ECCCC--ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEE
Q 001366          857 DACTG--QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       857 D~~tg--~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      |+...  +....+..|...+.+++|+| ++..+++++.|+.|++||+.++++..... +...|.+++|++++. .+++|+
T Consensus       125 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~~~~~~  202 (337)
T d1gxra_         125 DLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTGG  202 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            98754  46677888999999999999 88999999999999999999998877766 577899999999985 899999


Q ss_pred             CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEE
Q 001366          934 ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV 1012 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v 1012 (1092)
                      .|+.|++||+++++. +..+ .|...|.+++|+ ++..|++|+.|+.|++||++..        . ......|...|+++
T Consensus       203 ~d~~v~i~d~~~~~~-~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~--------~-~~~~~~~~~~i~~v  271 (337)
T d1gxra_         203 LDNTVRSWDLREGRQ-LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP--------D-KYQLHLHESCVLSL  271 (337)
T ss_dssp             TTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS--------C-EEEECCCSSCEEEE
T ss_pred             cccccccccccccee-eccc-ccccceEEEEEcccccccceecccccccccccccc--------c-cccccccccccceE
Confidence            999999999998763 3333 588899999998 6778999999999999999842        2 34567899999999


Q ss_pred             EEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEcC
Q 001366         1013 GLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092 (1092)
Q Consensus      1013 ~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~lv 1092 (1092)
                      +|+|++++|++|+.|+.|++||...++.+....               |...|.+++|+|++++|++|+.||.|+||+|+
T Consensus       272 ~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------------~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------------ESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------------CSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc---------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            999999999999999999999999988776542               46789999999999999999999999999984

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-40  Score=360.76  Aligned_cols=250  Identities=14%  Similarity=0.094  Sum_probs=188.4

Q ss_pred             HHHhhhccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCcc
Q 001366          214 FFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGAR  292 (1092)
Q Consensus       214 ~~~~~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (1092)
                      |..+-..||+|+||+|...    ..+..++.|+...... ......-.++..++...+||||+.+++.........    
T Consensus        13 ~~~~iG~G~fg~Vy~~~~~----~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~----   84 (270)
T d1t4ha_          13 FDIEIGRGSFKTVYKGLDT----ETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGK----   84 (270)
T ss_dssp             EEEEEEECSSEEEEEEEET----TTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSC----
T ss_pred             eeeEEecCcCcEEEEEEEC----CCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccC----
Confidence            3335567789999999763    2345566655433222 222333457888899999999999876543211000    


Q ss_pred             CCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcC--ccccCCCCCCeEEc-cCCcEE
Q 001366          293 TGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQG--VTFLDLKPSSFKLL-QSNQVK  369 (1092)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~g--IvHrDLKP~Nill~-~~~~vk  369 (1092)
                       .  ..     ..+||||+||+|.++|+..+ .++..+++.|++||+.||+|||++|  |+||||||+||||+ +++.+|
T Consensus        85 -~--~~-----~ivmE~~~~g~L~~~l~~~~-~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~K  155 (270)
T d1t4ha_          85 -K--CI-----VLVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVK  155 (270)
T ss_dssp             -E--EE-----EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEE
T ss_pred             -C--EE-----EEEEeCCCCCcHHHHHhccc-cccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEE
Confidence             0  00     13799999999999997764 5777799999999999999999999  99999999999997 578999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++....                                                                    
T Consensus       156 l~DFGla~~~~~--------------------------------------------------------------------  167 (270)
T d1t4ha_         156 IGDLGLATLKRA--------------------------------------------------------------------  167 (270)
T ss_dssp             ECCTTGGGGCCT--------------------------------------------------------------------
T ss_pred             EeecCcceeccC--------------------------------------------------------------------
Confidence            999999865320                                                                    


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ......+||+.|||||++.+ .|+.++|||||||+||||+++ 
T Consensus       168 -------------------------------------~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~  209 (270)
T d1t4ha_         168 -------------------------------------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSE  209 (270)
T ss_dssp             -------------------------------------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------CccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCC
Confidence                                                 00114679999999999876 699999999999999999985 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCC-CCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFL-SENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                        |.........+..+.....|+.+. ..++++.+|+.+||.+||++|||+.|||+||||.
T Consensus       210 ~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~Hp~fk  270 (270)
T d1t4ha_         210 YPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQ  270 (270)
T ss_dssp             CTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC
T ss_pred             CCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcCHHHHhCCcccC
Confidence              554444555555555555554443 4578899999999999999999999999999994

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-39  Score=368.49  Aligned_cols=242  Identities=17%  Similarity=0.173  Sum_probs=184.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .|+.|+||++...    ..+..+|.|+..............++..++...+||||+.+++....+...+           
T Consensus        16 ~G~fg~V~~~~~~----~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~-----------   80 (322)
T d1s9ja_          16 AGNGGVVFKVSHK----PSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEIS-----------   80 (322)
T ss_dssp             CCSSCCEEEEEET----TTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEE-----------
T ss_pred             cCCCeEEEEEEEC----CCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE-----------
Confidence            4578999999852    2356677766533222333445667888999999999999888766554444           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                           .+||||+||+|.++|.+.+ .+++.+++.++.||+.||+|||+ +||+||||||+||||+.++.+||+|||+|+.
T Consensus        81 -----iVmEy~~gg~L~~~l~~~~-~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~  154 (322)
T d1s9ja_          81 -----ICMEHMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  154 (322)
T ss_dssp             -----EEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHH
T ss_pred             -----EEEEcCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccc
Confidence                 3899999999999998765 47777999999999999999997 5999999999999999999999999999976


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ..+.                                                                            
T Consensus       155 ~~~~----------------------------------------------------------------------------  158 (322)
T d1s9ja_         155 LIDS----------------------------------------------------------------------------  158 (322)
T ss_dssp             HHHH----------------------------------------------------------------------------
T ss_pred             cCCC----------------------------------------------------------------------------
Confidence            4310                                                                            


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                   ..++.+||++|||||++.+..|+.++|||||||+||||++|   |.+....
T Consensus       159 -----------------------------~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~  209 (322)
T d1s9ja_         159 -----------------------------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAK  209 (322)
T ss_dssp             -----------------------------TC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTT
T ss_pred             -----------------------------ccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence                                         01156899999999999999999999999999999999985   4332111


Q ss_pred             -HHHH----------------------------------------HhccccCCCCCCC--CCChhHHHHHHhccccCCCC
Q 001366          536 -AAAM----------------------------------------SDLRDRILPPSFL--SENPKEAGFCLWQLHPEPLS  572 (1092)
Q Consensus       536 -~~~~----------------------------------------~~~~~~~~p~~~~--~~~~~~~~li~~lL~~dP~~  572 (1092)
                       ...+                                        ..+.. ..|+..+  ..++++.+|+.+||++||.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~dli~~~L~~dP~~  288 (322)
T d1s9ja_         210 ELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVN-EPPPKLPSGVFSLEFQDFVNKCLIKNPAE  288 (322)
T ss_dssp             HHHHHC------------------------------CCCCHHHHHHHHHT-SCCCCCCBTTBCHHHHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhhhc-cCCccCccccCCHHHHHHHHHHcCCChhH
Confidence             0000                                        00001 1112221  24678899999999999999


Q ss_pred             CCCHHHHhhhhhhhhh
Q 001366          573 RPTTREILQSEVTNEF  588 (1092)
Q Consensus       573 Rpsa~eiL~~~~~~~~  588 (1092)
                      |||++|+|+||||...
T Consensus       289 R~ta~e~L~Hpf~~~~  304 (322)
T d1s9ja_         289 RADLKQLMVHAFIKRS  304 (322)
T ss_dssp             SCCHHHHHTSHHHHHH
T ss_pred             CcCHHHHhhCHhhCcC
Confidence            9999999999999764

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-40  Score=361.66  Aligned_cols=249  Identities=16%  Similarity=0.162  Sum_probs=182.0

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCC--CC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNG--SL  287 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  287 (1092)
                      .|.+.+.+  ||.|+||++...    ..++.+|.|++...... .......++..++...+||||+.+++......  ..
T Consensus         5 dy~~~~~iG~G~fg~Vy~~~~~----~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~   80 (269)
T d2java1           5 DYEVLYTIGTGSYGRCQKIRRK----SDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTL   80 (269)
T ss_dssp             GEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CE
T ss_pred             hCEEeEEEecCCCeEEEEEEEC----CCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEE
Confidence            45555544  478999999762    23566777765333322 23344567778899999999999877654211  11


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHhhhcC-----ccccCCCCCC
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNA---RGHKGKRIECLYIFRQIVALVDYHHTQG-----VTFLDLKPSS  359 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~---~~~~~~~~~~~~i~~qil~~l~~lHs~g-----IvHrDLKP~N  359 (1092)
                      +                .+||||+||+|.++|..   .+..+++.+++.|+.||+.||+|||++|     |+||||||+|
T Consensus        81 ~----------------ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~N  144 (269)
T d2java1          81 Y----------------IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPAN  144 (269)
T ss_dssp             E----------------EEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGG
T ss_pred             E----------------EEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhh
Confidence            2                38999999999999954   3456888899999999999999999987     9999999999


Q ss_pred             eEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccc
Q 001366          360 FKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIE  439 (1092)
Q Consensus       360 ill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1092)
                      |||+.++.+||+|||+++.+....                                                        
T Consensus       145 Ill~~~~~vkl~DFG~a~~~~~~~--------------------------------------------------------  168 (269)
T d2java1         145 VFLDGKQNVKLGDFGLARILNHDT--------------------------------------------------------  168 (269)
T ss_dssp             EEECTTSCEEECCHHHHHHC------------------------------------------------------------
T ss_pred             cCcCCCCcEEEeeccceeecccCC--------------------------------------------------------
Confidence            999999999999999998754100                                                        


Q ss_pred             ccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhh
Q 001366          440 TANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLG  519 (1092)
Q Consensus       440 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLG  519 (1092)
                                                                     ...+..+||+.|||||++.+..|+.++||||||
T Consensus       169 -----------------------------------------------~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlG  201 (269)
T d2java1         169 -----------------------------------------------SFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLG  201 (269)
T ss_dssp             ------------------------------------------------------CCCSCCCHHHHTTCCCCHHHHHHHHH
T ss_pred             -----------------------------------------------CccccCCCCcccCCHHHHcCCCCChHHHHHhhC
Confidence                                                           001256799999999999999999999999999


Q ss_pred             HHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          520 VLFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       520 vll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      |+||||+++   |....... ....+.....++.....++++.+|+.+||++||.+|||+.|||+|||+
T Consensus       202 vilyel~tg~~Pf~~~~~~~-~~~~i~~~~~~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         202 CLLYELCALMPPFTAFSQKE-LAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             HHHHHHHHSSCSCCCSSHHH-HHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             HHHHHHhhCCCCCCCCCHHH-HHHHHHcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHHhCCcC
Confidence            999999985   55443332 333333333444444568899999999999999999999999999996

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-39  Score=365.41  Aligned_cols=250  Identities=16%  Similarity=0.165  Sum_probs=180.3

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  ||.|+||++...    ..++.+|.|+..............++..++...+||||+.+++....+...+   
T Consensus        11 Y~~~~~lG~G~fg~Vy~~~~~----~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~---   83 (307)
T d1a06a_          11 YDFRDVLGTGAFSEVILAEDK----RTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLY---   83 (307)
T ss_dssp             EEEEEESBSGGGGGEEEEEET----TTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEE---
T ss_pred             eEEEEEEeeccCeEEEEEEEC----CCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE---
Confidence            4444444  478999999752    2356677776543322223334456778889999999999887766544444   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc---cCCcE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL---QSNQV  368 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~---~~~~v  368 (1092)
                                   .+||||+||+|.++|...+ .+++.++..|+.||+.||+|||++||+||||||+|||+.   .++.+
T Consensus        84 -------------lvmE~~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~v  149 (307)
T d1a06a_          84 -------------LIMQLVSGGELFDRIVEKG-FYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKI  149 (307)
T ss_dssp             -------------EEECCCCSCBHHHHHHTCS-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCE
T ss_pred             -------------EEEeccCCCcHHHhhhccc-CCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceE
Confidence                         3899999999999997754 577889999999999999999999999999999999995   46889


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||+++.....                                                                  
T Consensus       150 kl~DFG~a~~~~~~------------------------------------------------------------------  163 (307)
T d1a06a_         150 MISDFGLSKMEDPG------------------------------------------------------------------  163 (307)
T ss_dssp             EECCC---------------------------------------------------------------------------
T ss_pred             EEeccceeEEccCC------------------------------------------------------------------
Confidence            99999998764310                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                            ......+||+.|||||++.+..|+.++|||||||+||||++|
T Consensus       164 --------------------------------------~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g  205 (307)
T d1a06a_         164 --------------------------------------SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG  205 (307)
T ss_dssp             -----------------------------------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------CeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhC
Confidence                                                  011256799999999999999999999999999999999985


Q ss_pred             ---CCcHHHHHHHHHhccccC--CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRI--LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                         |.+..........+....  .++.....++.+.+||.+||++||.+|||+.|+|+||||...
T Consensus       206 ~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~  270 (307)
T d1a06a_         206 YPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGD  270 (307)
T ss_dssp             SCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTTSS
T ss_pred             CCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCC
Confidence               555444444444443332  234445678999999999999999999999999999999753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.2e-36  Score=325.93  Aligned_cols=284  Identities=18%  Similarity=0.289  Sum_probs=256.3

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .|.+|.+.|++|+|+|++++||||+.|++|+|||+.+.       .......+|...|.+++|+++ +.++++++.++++
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~-------~~~~~~~~h~~~V~~~~~~~~-~~~~~~~~~~~~~   83 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-------DFERTLKGHTDSVQDISFDHS-GKLLASCSADMTI   83 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-------CCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCC
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------CEEEEEeCCCCcEEEEeeecc-ccccccccccccc
Confidence            46799999999999999999999999999999998752       223345578999999999998 8999999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      .+|+....+....+.+|...+.++.|++ ++..+++++.|+.+++||+++++.+..+. +...+.+++|+|++. +|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~  161 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASC  161 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred             ccccccccccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCC-EEEEE
Confidence            9999999998888999999999999999 88999999999999999999999988887 567899999999985 89999


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCC---------------------CEEEEEECCCeEEEEEcCCCCCC
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDS---------------------GTLVTASTDNKLKLWDLKRTSHT  991 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~---------------------~~L~Sgs~Dg~I~vWDl~~~~~~  991 (1092)
                      +.|+.|++||+++.. ....+.+|...+.++.|++.                     ..+++++.|+.|++||++     
T Consensus       162 ~~d~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-----  235 (317)
T d1vyhc1         162 SNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-----  235 (317)
T ss_dssp             ETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT-----
T ss_pred             eCCCeEEEEeeccce-eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC-----
Confidence            999999999999875 45678889999999988632                     368899999999999998     


Q ss_pred             CCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEe
Q 001366          992 GPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWR 1071 (1092)
Q Consensus       992 ~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~s 1071 (1092)
                         .+.++.++.+|...|.+++|+|++.+|++|+.||.|+|||+.+++++..+.              +|...|++++|+
T Consensus       236 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~h~~~V~~~~~s  298 (317)
T d1vyhc1         236 ---TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--------------AHEHFVTSLDFH  298 (317)
T ss_dssp             ---TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--------------CCSSCEEEEEEC
T ss_pred             ---CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc--------------CCCCCEEEEEEc
Confidence               467888999999999999999999999999999999999999888776653              578899999999


Q ss_pred             CCCCEEEEEecCCeEEEEE
Q 001366         1072 RRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1072 pd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      |++++|+||+.||.|+|||
T Consensus       299 ~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         299 KTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999997

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.6e-39  Score=370.66  Aligned_cols=253  Identities=19%  Similarity=0.181  Sum_probs=199.2

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      |-.|.+.+.++  |+|+||++..    ...++.+|.|+.... ...+.....++..++...+||||+.+++....+...+
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~----~~~~~~vAiK~i~~~-~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~  102 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVE----KATGRVFVAKFINTP-YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMV  102 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEE----TTTCCEEEEEEEECC-SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEE----CCCCCEEEEEEECCc-chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            34466666664  7999999975    223566777765322 2223344456888899999999999988766544444


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc--cCC
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL--QSN  366 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~--~~~  366 (1092)
                                      .+||||+||+|.+++...+..+++.+++.|++||+.||+|||++||+||||||+||||+  ..+
T Consensus       103 ----------------ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~  166 (352)
T d1koba_         103 ----------------LILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKAS  166 (352)
T ss_dssp             ----------------EEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCC
T ss_pred             ----------------EEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCC
Confidence                            38999999999999988777799999999999999999999999999999999999998  568


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+||+|||+++.+...                                                                
T Consensus       167 ~vkL~DFGla~~~~~~----------------------------------------------------------------  182 (352)
T d1koba_         167 SVKIIDFGLATKLNPD----------------------------------------------------------------  182 (352)
T ss_dssp             CEEECCCTTCEECCTT----------------------------------------------------------------
T ss_pred             eEEEeecccceecCCC----------------------------------------------------------------
Confidence            9999999999774410                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              .......||+.|||||++.+..|+.++|||||||+||||+
T Consensus       183 ----------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell  222 (352)
T d1koba_         183 ----------------------------------------EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLL  222 (352)
T ss_dssp             ----------------------------------------SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHH
Confidence                                                    0112467899999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccC--CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRI--LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +|   |.+...........+...  .++.+...++.+.+||.+||++||.+|||+.|+|+||||...
T Consensus       223 tG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~Hp~~~~~  289 (352)
T d1koba_         223 SGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGD  289 (352)
T ss_dssp             HSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSC
T ss_pred             hCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhCCC
Confidence            86   655544444433333322  223445678999999999999999999999999999999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-36  Score=340.03  Aligned_cols=326  Identities=20%  Similarity=0.308  Sum_probs=255.6

Q ss_pred             EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCC-----------Cc
Q 001366          748 LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFND-----------SV  816 (1092)
Q Consensus       748 l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~-----------~~  816 (1092)
                      +....++...+|+...-.....-.. ...+|.+.|+||+|+|||++||+|+ |++|+|||+......           ..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVELH-KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEEE-EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             cccCCCCcEEEeCCCCCcceeeeeE-eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            4445556666776432221111111 2236999999999999999999986 899999998652110           00


Q ss_pred             ccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcE
Q 001366          817 DVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSV  896 (1092)
Q Consensus       817 ~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I  896 (1092)
                      ..........|...|.+++|+|+ +++|++|+.||+|++||..+++.+..+.+|...|.+++|++ ++..+++|+.++.+
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~-~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i  187 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTV  187 (388)
T ss_dssp             ---------CCCCBEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             cccccccccCCCCCEEEEEECCC-CCcceeccccccccccccccccccccccccccccccccccc-ccccccccccceee
Confidence            01111223457888999999998 89999999999999999999999999999999999999999 88899999999999


Q ss_pred             EEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcce------EEecCCCCCeEEEEEc-CCC
Q 001366          897 KLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPW------CVLAGHEKAVSYVKFL-DSG  969 (1092)
Q Consensus       897 ~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~------~~l~~H~~~V~~v~fs-~~~  969 (1092)
                      ++||+++........+.....++.|++....+|++|+.|+.|++||+++.....      ....+|...|.+++|+ ++.
T Consensus       188 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  267 (388)
T d1erja_         188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ  267 (388)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             eeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC
Confidence            999999998888888777777888887655799999999999999999765321      2235789999999999 677


Q ss_pred             EEEEEECCCeEEEEEcCCCCCCC----CCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeee
Q 001366          970 TLVTASTDNKLKLWDLKRTSHTG----PSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYK 1045 (1092)
Q Consensus       970 ~L~Sgs~Dg~I~vWDl~~~~~~~----~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~ 1045 (1092)
                      +|++|+.|+.|++||++......    .....+......|...|++++|+|++.+|++|+.||.|++||+.+++++..++
T Consensus       268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence            99999999999999998644221    12335566777899999999999999999999999999999999998887654


Q ss_pred             ccccCCCCCccccCCCCCCEEEEEE------eCCCCEEEEEecCCeEEEEEc
Q 001366         1046 FGSIDPISGKETDDDNGLFVSSVCW------RRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1046 ~~~~~~i~~~~~~~~h~~~V~sva~------spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                                    +|...|.+++|      +|++.+||||+.||.|+||++
T Consensus       348 --------------~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         348 --------------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             --------------CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             --------------CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence                          57888999875      678999999999999999996

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.6e-39  Score=361.26  Aligned_cols=241  Identities=13%  Similarity=0.066  Sum_probs=188.0

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchh--hHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSD--AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .||+|+||+|...    ..+..+|.|+.........  .....++..++...+||||+.++.....+...+         
T Consensus        25 ~G~fg~Vy~a~~~----~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~---------   91 (309)
T d1u5ra_          25 HGSFGAVYFARDV----RNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAW---------   91 (309)
T ss_dssp             ECSSSEEEEEEET----TTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE---------
T ss_pred             cCCCeEEEEEEEC----CCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEE---------
Confidence            3578999999752    2256677776543332222  234567888899999999999888766554444         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+||||.||+|..++...+ .+++.+++.|++||+.||+|||++||+||||||+||||+.++.+||+|||+++
T Consensus        92 -------iv~E~~~~g~l~~~~~~~~-~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~  163 (309)
T d1u5ra_          92 -------LVMEYCLGSASDLLEVHKK-PLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSAS  163 (309)
T ss_dssp             -------EEEECCSEEHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCB
T ss_pred             -------EEEEecCCCchHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeeccccc
Confidence                   3899999999987776554 57888999999999999999999999999999999999999999999999886


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ....                                                                            
T Consensus       164 ~~~~----------------------------------------------------------------------------  167 (309)
T d1u5ra_         164 IMAP----------------------------------------------------------------------------  167 (309)
T ss_dssp             SSSS----------------------------------------------------------------------------
T ss_pred             ccCC----------------------------------------------------------------------------
Confidence            5320                                                                            


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC---CCCCccccchhhhHHHHHHcCC---CCc
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG---GVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~---~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                     ....+||+.|||||++.+   ..|+.++|||||||+||||+++   |..
T Consensus       168 -------------------------------~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~  216 (309)
T d1u5ra_         168 -------------------------------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN  216 (309)
T ss_dssp             -------------------------------BCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             -------------------------------CCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCC
Confidence                                           014579999999999975   4689999999999999999986   544


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          532 ERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ................+......++.+.+|+.+||++||.+|||++|+|+||||...
T Consensus       217 ~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~Hp~~~~~  273 (309)
T d1u5ra_         217 MNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRE  273 (309)
T ss_dssp             SCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSC
T ss_pred             CCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHhCHHhcCC
Confidence            444444444444433333334567889999999999999999999999999999653

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=4.7e-39  Score=366.43  Aligned_cols=252  Identities=19%  Similarity=0.153  Sum_probs=195.3

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.++  |+|+||++...    ..+..+|.|+... ....+.....++..++...+||||+.+++....+...+   
T Consensus        28 Y~i~~~lG~G~fg~Vy~~~~~----~~g~~vAvK~i~~-~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~---   99 (350)
T d1koaa2          28 YDIHEELGTGAFGVVHRVTER----ATGNNFAAKFVMT-PHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMV---   99 (350)
T ss_dssp             EEEEEEEEEETTEEEEEEEET----TTTEEEEEEEECC-CSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEE---
T ss_pred             eEEEEEEecCcCeEEEEEEEC----CCCCEEEEEEEcc-cchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE---
Confidence            55555554  79999999762    2356667766532 22333444557788889999999999888766544444   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc--CCcEE
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ--SNQVK  369 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~--~~~vk  369 (1092)
                                   .+||||+||+|.++|......+++.+++.|++||+.||+|||++|||||||||+||||+.  ++.+|
T Consensus       100 -------------ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vk  166 (350)
T d1koaa2         100 -------------MIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELK  166 (350)
T ss_dssp             -------------EEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEE
T ss_pred             -------------EEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEE
Confidence                         389999999999999766667899999999999999999999999999999999999964  58899


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++.+...                                                                   
T Consensus       167 L~DFG~a~~~~~~-------------------------------------------------------------------  179 (350)
T d1koaa2         167 LIDFGLTAHLDPK-------------------------------------------------------------------  179 (350)
T ss_dssp             ECCCTTCEECCTT-------------------------------------------------------------------
T ss_pred             Eeecchheecccc-------------------------------------------------------------------
Confidence            9999998764410                                                                   


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           .......||++|||||++.+..|+.++|||||||+||||++| 
T Consensus       180 -------------------------------------~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~  222 (350)
T d1koaa2         180 -------------------------------------QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGL  222 (350)
T ss_dssp             -------------------------------------SCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------cccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCC
Confidence                                                 001256799999999999999999999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhcccc--CCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhhc
Q 001366          529 --FDSERALAAAMSDLRDR--ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQE  590 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~~  590 (1092)
                        |.+..............  ..++.+...++.+.+||.+||++||.+|||++|||+||||.....
T Consensus       223 ~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hp~~~~~~~  288 (350)
T d1koaa2         223 SPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNA  288 (350)
T ss_dssp             CSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHSTTTSCTTC
T ss_pred             CCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCC
Confidence              55544433333333222  222334456889999999999999999999999999999987643

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-39  Score=364.12  Aligned_cols=250  Identities=16%  Similarity=0.163  Sum_probs=193.9

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.++  +.|+||++..    ...++.+|.|+..-..  .........++..++...+||||+.++.....+...+
T Consensus         6 dy~~~~~lG~G~fg~V~~~~~----~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~   81 (337)
T d1o6la_           6 DFDYLKLLGKGTFGKVILVRE----KATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             GEEEEEEEEECSSEEEEEEEE----TTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             hcEEEEEEecCcCeEEEEEEE----CCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccc
Confidence            455555554  7899999985    2346677776653211  1122344556777889999999999888877555444


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+||||+||+|.+++...+ .+++.+++.|++||+.||+|||++||+||||||+||||+.+|.+
T Consensus        82 ----------------iv~ey~~gg~L~~~~~~~~-~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~v  144 (337)
T d1o6la_          82 ----------------FVMEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHI  144 (337)
T ss_dssp             ----------------EEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCE
T ss_pred             ----------------cceeccCCCchhhhhhccc-CCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCE
Confidence                            2899999999999998765 46777999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++......                                                                 
T Consensus       145 kl~DFG~a~~~~~~~-----------------------------------------------------------------  159 (337)
T d1o6la_         145 KITDFGLCKEGISDG-----------------------------------------------------------------  159 (337)
T ss_dssp             EECCCTTCBCSCCTT-----------------------------------------------------------------
T ss_pred             EEeecccccccccCC-----------------------------------------------------------------
Confidence            999999997643100                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                            ......+||++|||||++.+..|+.++|||||||+||||++|
T Consensus       160 --------------------------------------~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G  201 (337)
T d1o6la_         160 --------------------------------------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG  201 (337)
T ss_dssp             --------------------------------------CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------cccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHC
Confidence                                                  011256899999999999999999999999999999999985


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                         |.+..............+..|  ...++++.+||.+||.+||.+||+     +.||++||||.+.
T Consensus       202 ~~pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~i  267 (337)
T d1o6la_         202 RLPFYNQDHERLFELILMEEIRFP--RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSI  267 (337)
T ss_dssp             SCSSCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             CCCCCCcCHHHHHHHHhcCCCCCC--ccCCHHHHHHHHhhccCCchhhcccccccHHHHHcCcccccC
Confidence               555444433333333332222  345899999999999999999995     8999999999763

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-39  Score=358.48  Aligned_cols=252  Identities=15%  Similarity=0.140  Sum_probs=190.9

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.+  ||+|+||++...    ..++.+|.|+......  ........++..++...+||||+.+++....+...+
T Consensus         9 dy~i~~~lG~G~fg~Vy~a~~~----~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~   84 (288)
T d1uu3a_           9 DFKFGKILGEGSFSTVVLAREL----ATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLY   84 (288)
T ss_dssp             GEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEE
T ss_pred             CCEEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEE
Confidence            45555544  478999999762    2356677776532111  112234556777788899999999888766544444


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+||||+||+|.+++...+ .+++.+++.++.||+.||+|||++||+||||||+||||+.++.+
T Consensus        85 ----------------ivmEy~~gg~L~~~~~~~~-~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~v  147 (288)
T d1uu3a_          85 ----------------FGLSYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHI  147 (288)
T ss_dssp             ----------------EEECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCE
T ss_pred             ----------------EEEEccCCCCHHHhhhccC-CCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceE
Confidence                            3899999999999998765 47777999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||+++.+.....                                                                
T Consensus       148 kl~DFG~a~~~~~~~~----------------------------------------------------------------  163 (288)
T d1uu3a_         148 QITDFGTAKVLSPESK----------------------------------------------------------------  163 (288)
T ss_dssp             EECCCTTCEECC--------------------------------------------------------------------
T ss_pred             EecccccceecccCCc----------------------------------------------------------------
Confidence            9999999987541000                                                                


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                           ....+..+||+.|||||++.+..|+.++|||||||+||||++|
T Consensus       164 -------------------------------------~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g  206 (288)
T d1uu3a_         164 -------------------------------------QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG  206 (288)
T ss_dssp             -------------------------------------------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------ccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhC
Confidence                                                 0111256899999999999999999999999999999999985


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHH------Hhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTRE------ILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e------iL~~~~~~~~  588 (1092)
                         |.+..........++.....|  ...++++.+||.+||++||.+|||++|      |++||||.+.
T Consensus       207 ~~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i  273 (288)
T d1uu3a_         207 LPPFRAGNEYLIFQKIIKLEYDFP--EKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESV  273 (288)
T ss_dssp             SCSSCCSSHHHHHHHHHTTCCCCC--TTCCHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTC
T ss_pred             CCCCCCcCHHHHHHHHHcCCCCCC--ccCCHHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCC
Confidence               655544444444444332222  245899999999999999999999988      5778888765

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-38  Score=348.83  Aligned_cols=239  Identities=17%  Similarity=0.114  Sum_probs=177.6

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCch-hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS-DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..||+|.||+|...       ..+|.|++....... ....-.++..++...+||||+.++..... ...          
T Consensus        17 G~G~fg~Vy~~~~~-------~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~----------   78 (276)
T d1uwha_          17 GSGSFGTVYKGKWH-------GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQL----------   78 (276)
T ss_dssp             EECSSCEEEEEESS-------SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSC----------
T ss_pred             eeCCCcEEEEEEEC-------CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEE----------
Confidence            34589999999763       335666653332222 23334467788999999999987654221 111          


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                            ..+||||+||+|.++|...+..++..+++.|+.||+.||+|||++|||||||||+||||+.++.+||+|||+++
T Consensus        79 ------~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~  152 (276)
T d1uwha_          79 ------AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLAT  152 (276)
T ss_dssp             ------EEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSC
T ss_pred             ------EEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEcccccee
Confidence                  13899999999999998776778998999999999999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       153 ~~~~~~--------------------------------------------------------------------------  158 (276)
T d1uwha_         153 VKSRWS--------------------------------------------------------------------------  158 (276)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             eccccC--------------------------------------------------------------------------
Confidence            644100                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC---CCCCccccchhhhHHHHHHcCC---CCc
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG---GVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~---~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                 .....+...||+.|||||++.+   ..|+.++|||||||+||||+++   |..
T Consensus       159 ---------------------------~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~  211 (276)
T d1uwha_         159 ---------------------------GSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSN  211 (276)
T ss_dssp             ----------------------------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             ---------------------------CcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCC
Confidence                                       0011225679999999999975   4589999999999999999986   544


Q ss_pred             HHHHHHHHHhccccCCCC----CCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          532 ERALAAAMSDLRDRILPP----SFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       532 ~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ..........+.....+|    .....++.+.+|+.+||.+||.+|||++||+++
T Consensus       212 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~  266 (276)
T d1uwha_         212 INNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS  266 (276)
T ss_dssp             CCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            333334443343333332    233456889999999999999999999999987

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-38  Score=352.41  Aligned_cols=250  Identities=13%  Similarity=0.100  Sum_probs=185.6

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc-h---hhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-S---DAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGV  295 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (1092)
                      .|+.|+||++...    ..++.+|.|+....... .   ......++..++...+||||+.+++....+...+       
T Consensus         8 ~G~fg~Vy~~~~~----~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~-------   76 (299)
T d1ua2a_           8 EGQFATVYKARDK----NTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS-------   76 (299)
T ss_dssp             EETTEEEEEEECS----SCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE-------
T ss_pred             cCcCeEEEEEEEC----CCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCcee-------
Confidence            4678999999873    23566777665222111 1   1234556778889999999999888766554444       


Q ss_pred             CCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccc
Q 001366          296 PASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPII  375 (1092)
Q Consensus       296 ~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~  375 (1092)
                               .+||||.|+++..++... ..+++.++..|++||+.||+|||++||+||||||+|||++..+.+||+|||+
T Consensus        77 ---------ivmE~~~~~~~~~~~~~~-~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~  146 (299)
T d1ua2a_          77 ---------LVFDFMETDLEVIIKDNS-LVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGL  146 (299)
T ss_dssp             ---------EEEECCSEEHHHHHTTCC-SSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGG
T ss_pred             ---------ehhhhhcchHHhhhhhcc-cCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCcc
Confidence                     389999999888776544 4567779999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCC
Q 001366          376 QKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSH  455 (1092)
Q Consensus       376 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  455 (1092)
                      ++......                                                                        
T Consensus       147 a~~~~~~~------------------------------------------------------------------------  154 (299)
T d1ua2a_         147 AKSFGSPN------------------------------------------------------------------------  154 (299)
T ss_dssp             GSTTTSCC------------------------------------------------------------------------
T ss_pred             ccccCCCc------------------------------------------------------------------------
Confidence            87644100                                                                        


Q ss_pred             CCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCc
Q 001366          456 NDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                     ......+||++|+|||++.+ ..|+.++|||||||+||||+++   |.+
T Consensus       155 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~  203 (299)
T d1ua2a_         155 -------------------------------RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPG  203 (299)
T ss_dssp             -------------------------------CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             -------------------------------ccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCC
Confidence                                           01114579999999999876 4689999999999999999986   555


Q ss_pred             HHHHHHHHHhccc--c-------------------CCCC-----CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          532 ERALAAAMSDLRD--R-------------------ILPP-----SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       532 ~~~~~~~~~~~~~--~-------------------~~p~-----~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      ...........+.  .                   ..+.     .+...++.+.+|+.+||++||++||||.|+|+||||
T Consensus       204 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f  283 (299)
T d1ua2a_         204 DSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYF  283 (299)
T ss_dssp             SSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGG
T ss_pred             CCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCCHhh
Confidence            4443333222211  0                   0000     123457889999999999999999999999999999


Q ss_pred             hhhhccch
Q 001366          586 NEFQEVCA  593 (1092)
Q Consensus       586 ~~~~~~~~  593 (1092)
                      ++.+.+.+
T Consensus       284 ~~~p~p~~  291 (299)
T d1ua2a_         284 SNRPGPTP  291 (299)
T ss_dssp             TSSSCCCC
T ss_pred             CCCCCCCC
Confidence            87665443

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-38  Score=350.83  Aligned_cols=250  Identities=15%  Similarity=0.120  Sum_probs=190.8

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc-----hhhHhhhhhhhhhccCCCCCCCccccceecCCC
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-----SDAALKAAGAMMVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      |.+.+.++  +.|+||++...    ..+..+|.|++......     .......++..++...+||||+.+++....+..
T Consensus        12 Y~~~~~lG~G~fg~Vy~~~~~----~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   87 (293)
T d1jksa_          12 YDTGEELGSGQFAVVKKCREK----STGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD   87 (293)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             EEEeEEEecCCCeEEEEEEEC----CCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence            55555554  78999999862    23566677664322211     122334567778889999999998887665444


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      .+                .+||||+||+|.++|...+ .+++.+++.|++||+.||+|||++||+||||||+|||++.++
T Consensus        88 ~~----------------iv~E~~~gg~L~~~i~~~~-~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~  150 (293)
T d1jksa_          88 VI----------------LILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRN  150 (293)
T ss_dssp             EE----------------EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSS
T ss_pred             EE----------------EEEEcCCCccccchhcccc-ccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCC
Confidence            44                3899999999999997765 578889999999999999999999999999999999998776


Q ss_pred             ----cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccC
Q 001366          367 ----QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN  442 (1092)
Q Consensus       367 ----~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1092)
                          .+|++|||+++.....                                                            
T Consensus       151 ~~~~~vkl~DfG~a~~~~~~------------------------------------------------------------  170 (293)
T d1jksa_         151 VPKPRIKIIDFGLAHKIDFG------------------------------------------------------------  170 (293)
T ss_dssp             SSSCCEEECCCTTCEECTTS------------------------------------------------------------
T ss_pred             CcccceEecchhhhhhcCCC------------------------------------------------------------
Confidence                4999999998764310                                                            


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHH
Q 001366          443 ESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLF  522 (1092)
Q Consensus       443 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll  522 (1092)
                                                                  .......||+.|+|||++.+..++.++|||||||+|
T Consensus       171 --------------------------------------------~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvil  206 (293)
T d1jksa_         171 --------------------------------------------NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT  206 (293)
T ss_dssp             --------------------------------------------CBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHH
T ss_pred             --------------------------------------------ccccccCCCCcccCHHHHcCCCCCCcccchhhhHHH
Confidence                                                        001145789999999999999999999999999999


Q ss_pred             HHHcCC---CCcHHHHHHHHHhccccC--CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          523 FELFGR---FDSERALAAAMSDLRDRI--LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       523 ~ell~~---f~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      |||+++   |.+...............  .++.+...++.+.+||.+||++||.+|||++|+|+||||...
T Consensus       207 yell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~  277 (293)
T d1jksa_         207 YILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPK  277 (293)
T ss_dssp             HHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTCC-
T ss_pred             HHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCC
Confidence            999985   555444443333333222  122335568889999999999999999999999999999753

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-38  Score=352.43  Aligned_cols=246  Identities=15%  Similarity=0.115  Sum_probs=190.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.+  ||.|+||++...    ..+..+|.|+.....  .........++..++...+||||+.+++....+...+ 
T Consensus         6 y~i~~~lG~G~fg~Vy~a~~~----~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~-   80 (316)
T d1fota_           6 FQILRTLGTGSFGRVHLIRSR----HNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIF-   80 (316)
T ss_dssp             EEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEE-
T ss_pred             eEEEEEEecCcCcEEEEEEEC----CCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeee-
Confidence            4444444  468999999852    235666776652211  1112233446677888999999999888766554444 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                                     .+||||+||+|.+++...+. ++..+++.|++||+.||+|||++||+||||||+||||+.+|.+|
T Consensus        81 ---------------ivmE~~~gg~l~~~~~~~~~-~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vk  144 (316)
T d1fota_          81 ---------------MIMDYIEGGELFSLLRKSQR-FPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIK  144 (316)
T ss_dssp             ---------------EEECCCCSCBHHHHHHHTSS-CCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEE
T ss_pred             ---------------eEeeecCCcccccccccccc-ccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEE
Confidence                           28999999999999977654 56668999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      |+|||+++...+.                                                                   
T Consensus       145 L~DFG~a~~~~~~-------------------------------------------------------------------  157 (316)
T d1fota_         145 ITDFGFAKYVPDV-------------------------------------------------------------------  157 (316)
T ss_dssp             ECCCSSCEECSSC-------------------------------------------------------------------
T ss_pred             EecCccceEeccc-------------------------------------------------------------------
Confidence            9999998764310                                                                   


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                             .+..+||+.|||||++.+..|+.++|||||||+||||++| 
T Consensus       158 ---------------------------------------~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~  198 (316)
T d1fota_         158 ---------------------------------------TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGY  198 (316)
T ss_dssp             ---------------------------------------BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSS
T ss_pred             ---------------------------------------cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCC
Confidence                                                   0145799999999999999999999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                        |.+..........+......|  ...++++.+++.+||.+||.+|+     |+++||+||||.+.
T Consensus       199 ~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~i  263 (316)
T d1fota_         199 TPFYDSNTMKTYEKILNAELRFP--PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEV  263 (316)
T ss_dssp             CTTCCSSHHHHHHHHHHCCCCCC--TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSC
T ss_pred             CCCCCcCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHcCcccccC
Confidence              655554444444444332222  23578899999999999999996     89999999999774

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-38  Score=355.76  Aligned_cols=252  Identities=17%  Similarity=0.174  Sum_probs=196.4

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      |-.|.+.+.++  |+|+||++...    ..++.+|.|+....  ..+.....++..++...+||||+.+++....+...+
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~----~~~~~~AiK~i~~~--~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~   77 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVET----SSKKTYMAKFVKVK--GTDQVLVKKEISILNIARHRNILHLHESFESMEELV   77 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECCC--THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEEC----CCCcEEEEEEEcCC--cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEE
Confidence            33466666554  68999999863    23556677665322  223344557778899999999999888766555545


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccC--C
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQS--N  366 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~--~  366 (1092)
                                      .+||||+||+|.++|...+..+++.+++.|++||+.||+|||++||+||||||+|||++.+  +
T Consensus        78 ----------------lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~  141 (321)
T d1tkia_          78 ----------------MIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSS  141 (321)
T ss_dssp             ----------------EEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCC
T ss_pred             ----------------EEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCce
Confidence                            3899999999999998877678999999999999999999999999999999999999854  4


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+|++|||+++.....                                                                
T Consensus       142 ~ikl~DFG~~~~~~~~----------------------------------------------------------------  157 (321)
T d1tkia_         142 TIKIIEFGQARQLKPG----------------------------------------------------------------  157 (321)
T ss_dssp             CEEECCCTTCEECCTT----------------------------------------------------------------
T ss_pred             EEEEcccchhhccccC----------------------------------------------------------------
Confidence            7999999998764310                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              .......||+.|+|||++.+..|+.++|||||||+||||+
T Consensus       158 ----------------------------------------~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll  197 (321)
T d1tkia_         158 ----------------------------------------DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLL  197 (321)
T ss_dssp             ----------------------------------------CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CcccccccccccccchhccCCCCCchhhcccHHHHHHHHH
Confidence                                                    0011457899999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccccCCC--CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          527 GR---FDSERALAAAMSDLRDRILP--PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +|   |.............+....+  +.+...++++.+||.+||.+||.+|||+.|+|+||||.+.
T Consensus       198 ~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~  264 (321)
T d1tkia_         198 SGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQK  264 (321)
T ss_dssp             HSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSC
T ss_pred             hCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccC
Confidence            86   65554444444444433222  2334668899999999999999999999999999999764

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-38  Score=359.17  Aligned_cols=242  Identities=17%  Similarity=0.137  Sum_probs=181.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC-----chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-----PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTG  294 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (1092)
                      .||+|.||++...    ..+..+|.|+......     .........+..++....||||+.++.....+...+      
T Consensus        14 ~G~fg~Vy~~~~~----~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~------   83 (364)
T d1omwa3          14 RGGFGEVYGCRKA----DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS------   83 (364)
T ss_dssp             ECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE------
T ss_pred             cCCCeEEEEEEEC----CCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE------
Confidence            3589999999862    2356677766421111     111112233456778889999999887766544333      


Q ss_pred             CCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccc
Q 001366          295 VPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI  374 (1092)
Q Consensus       295 ~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg  374 (1092)
                                .+||||+||+|.++|...+ .+++.+++.|++||+.||+|||++||+||||||+||||+..|.+||+|||
T Consensus        84 ----------ivmE~~~gg~L~~~l~~~~-~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFG  152 (364)
T d1omwa3          84 ----------FILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLG  152 (364)
T ss_dssp             ----------EEECCCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCT
T ss_pred             ----------EEEEecCCCcHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeec
Confidence                      3899999999999998765 46777999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++.+...                                                                        
T Consensus       153 la~~~~~~------------------------------------------------------------------------  160 (364)
T d1omwa3         153 LACDFSKK------------------------------------------------------------------------  160 (364)
T ss_dssp             TCEECSSS------------------------------------------------------------------------
T ss_pred             eeeecCCC------------------------------------------------------------------------
Confidence            98764410                                                                        


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CC
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FD  530 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~  530 (1092)
                                                       .....+||+.|||||++.. ..|+.++|||||||+||||++|   |.
T Consensus       161 ---------------------------------~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~  207 (364)
T d1omwa3         161 ---------------------------------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFR  207 (364)
T ss_dssp             ---------------------------------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ---------------------------------cccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCC
Confidence                                             0114579999999999975 5689999999999999999986   43


Q ss_pred             cHH--HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCC-----HHHHhhhhhhhhh
Q 001366          531 SER--ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPT-----TREILQSEVTNEF  588 (1092)
Q Consensus       531 ~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rps-----a~eiL~~~~~~~~  588 (1092)
                      ...  .......... ...++.....++++.+||.+||++||.+|||     |+||++||||...
T Consensus       208 ~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i  271 (364)
T d1omwa3         208 QHKTKDKHEIDRMTL-TMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSL  271 (364)
T ss_dssp             SSCSSCHHHHHHHSS-SCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTC
T ss_pred             CCCHHHHHHHHHhcc-cCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHcCccccCC
Confidence            321  1222222211 1122223346899999999999999999999     7999999999864

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-37  Score=355.01  Aligned_cols=247  Identities=15%  Similarity=0.077  Sum_probs=192.5

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      .|.+.+.+|  +.|.||++..    ...++.+|.|+..-..  .........++..++...+||||+.++.........+
T Consensus        42 ~y~i~~~lG~G~fg~Vy~a~~----~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~  117 (350)
T d1rdqe_          42 QFDRIKTLGTGSFGRVMLVKH----KESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLY  117 (350)
T ss_dssp             GEEEEEEEEECSSCEEEEEEE----TTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             CeEEEEEeecCcCcEEEEEEE----CCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccccccc
Confidence            566655554  7899999975    2235667776642111  1112234556778889999999999887765444433


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+|+|+.||+|.++|...+ .+++.+++.|+.||+.||+|||++|||||||||+||||+.+|.+
T Consensus       118 ----------------~v~e~~~~g~l~~~l~~~~-~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~i  180 (350)
T d1rdqe_         118 ----------------MVMEYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYI  180 (350)
T ss_dssp             ----------------EEEECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCE
T ss_pred             ----------------cccccccccchhhhHhhcC-CCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCE
Confidence                            2799999999999997765 47788999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.+...                                                                  
T Consensus       181 kL~DFG~a~~~~~~------------------------------------------------------------------  194 (350)
T d1rdqe_         181 QVTDFGFAKRVKGR------------------------------------------------------------------  194 (350)
T ss_dssp             EECCCTTCEECSSC------------------------------------------------------------------
T ss_pred             Eeeeceeeeecccc------------------------------------------------------------------
Confidence            99999999764310                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                              .....||+.|||||++.+..|+.++|||||||+||||++|
T Consensus       195 ----------------------------------------~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG  234 (350)
T d1rdqe_         195 ----------------------------------------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAG  234 (350)
T ss_dssp             ----------------------------------------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHS
T ss_pred             ----------------------------------------cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhC
Confidence                                                    0145799999999999999999999999999999999986


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                         |.+................+  ....++++.+||.+||++||.+|+     |+++||+||||...
T Consensus       235 ~~Pf~~~~~~~~~~~i~~~~~~~--p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~  300 (350)
T d1rdqe_         235 YPPFFADQPIQIYEKIVSGKVRF--PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT  300 (350)
T ss_dssp             SCSSCCSSHHHHHHHHHHCCCCC--CTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTC
T ss_pred             CCCCCCcCHHHHHHHHhcCCCCC--CccCCHHHHHHHHHHhhhCHHhccccccccHHHHHcCccccCC
Confidence               65554444444444333222  234689999999999999999994     99999999999764

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=350.93  Aligned_cols=247  Identities=13%  Similarity=0.073  Sum_probs=178.8

Q ss_pred             ccccceeeeCCCCCccc-cccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCCC
Q 001366          220 LKGKGIVCRGPPLNAFK-ERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      .||+|+||+|.....-. .....++.|+..............++...+... +||||+.++.....+...+         
T Consensus        47 ~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~---------  117 (325)
T d1rjba_          47 SGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIY---------  117 (325)
T ss_dssp             ECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE---------
T ss_pred             eCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEE---------
Confidence            35899999997521100 001234444443322233333445566666665 8999999887766444433         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcC----------------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCC
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARG----------------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDL  355 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~----------------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDL  355 (1092)
                             .+||||+||+|.++|+...                      ..++..+++.|+.||+.||+|||++|||||||
T Consensus       118 -------lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDl  190 (325)
T d1rjba_         118 -------LIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDL  190 (325)
T ss_dssp             -------EEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTC
T ss_pred             -------EEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccC
Confidence                   3899999999999997653                      24778899999999999999999999999999


Q ss_pred             CCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccC
Q 001366          356 KPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYG  435 (1092)
Q Consensus       356 KP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (1092)
                      ||+|||++.++.+||+|||+++......                                                    
T Consensus       191 Kp~Nill~~~~~~Kl~DFGla~~~~~~~----------------------------------------------------  218 (325)
T d1rjba_         191 AARNVLVTHGKVVKICDFGLARDIMSDS----------------------------------------------------  218 (325)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCT----------------------------------------------------
T ss_pred             chhccccccCCeEEEeeccccccccCCC----------------------------------------------------
Confidence            9999999999999999999998744100                                                    


Q ss_pred             CcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccc
Q 001366          436 NKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNI  515 (1092)
Q Consensus       436 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDI  515 (1092)
                                                                       .........||+.|||||++.+..|+.++||
T Consensus       219 -------------------------------------------------~~~~~~~~~gt~~y~aPE~l~~~~~~~~~Di  249 (325)
T d1rjba_         219 -------------------------------------------------NYVVRGNARLPVKWMAPESLFEGIYTIKSDV  249 (325)
T ss_dssp             -------------------------------------------------TSEEETTEEECGGGCCHHHHHHCCCCHHHHH
T ss_pred             -------------------------------------------------ceeeeccccCCCccCChHHHcCCCCCcceec
Confidence                                                             0011124578999999999999999999999


Q ss_pred             hhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          516 YSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       516 wSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                      |||||+||||++ +   |.+..........+.....++.....++.+.+||.+||++||++|||++||++|.
T Consensus       250 wS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L  321 (325)
T d1rjba_         250 WSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL  321 (325)
T ss_dssp             HHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             cchhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            999999999996 4   5443222333333444333444455688899999999999999999999999863

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=351.16  Aligned_cols=243  Identities=17%  Similarity=0.136  Sum_probs=186.5

Q ss_pred             ccccceeeeCCCCCcccccccccccccccccc--CchhhHhhhhhhhh-hccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTT--MPSDAALKAAGAMM-VASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      .|+.|+||++...    ..++.+|.|+..-..  ..........++.. ....+||||+.+++....+...++       
T Consensus        12 ~G~fg~Vy~~~~~----~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yi-------   80 (320)
T d1xjda_          12 KGSFGKVFLAEFK----KTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFF-------   80 (320)
T ss_dssp             ECSSSEEEEEEET----TTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE-------
T ss_pred             cCCCcEEEEEEEC----CCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeE-------
Confidence            4578999999863    346677777753211  11122223344443 346899999999888776555553       


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                               +||||+||+|.++|...+ .+++.+++.+++||+.||+|||++||+||||||+|||++..+.+|++|||++
T Consensus        81 ---------vmEy~~~g~L~~~i~~~~-~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a  150 (320)
T d1xjda_          81 ---------VMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMC  150 (320)
T ss_dssp             ---------EEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             ---------EEeecCCCcHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchh
Confidence                     899999999999998765 4677799999999999999999999999999999999999999999999998


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       151 ~~~~~~--------------------------------------------------------------------------  156 (320)
T d1xjda_         151 KENMLG--------------------------------------------------------------------------  156 (320)
T ss_dssp             BCCCCT--------------------------------------------------------------------------
T ss_pred             hhcccc--------------------------------------------------------------------------
Confidence            764310                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                   ....+..+||++|+|||++.+..|+.++|||||||+||||++|   |.+..
T Consensus       157 -----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~  207 (320)
T d1xjda_         157 -----------------------------DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD  207 (320)
T ss_dssp             -----------------------------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             -----------------------------cccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCC
Confidence                                         0011245799999999999999999999999999999999985   65544


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHH-HHhhhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTR-EILQSEVTNEF  588 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~-eiL~~~~~~~~  588 (1092)
                      ............+.  .....++++.+|+.+||.+||.+|||+. ++++||||.+.
T Consensus       208 ~~~~~~~i~~~~~~--~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~hpff~~~  261 (320)
T d1xjda_         208 EEELFHSIRMDNPF--YPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREI  261 (320)
T ss_dssp             HHHHHHHHHHCCCC--CCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTC
T ss_pred             HHHHHHHHHcCCCC--CCccCCHHHHHHHHHhcccCCCCCcCHHHHHHhCchhccC
Confidence            44333333333222  2234588999999999999999999995 89999999864

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-37  Score=343.58  Aligned_cols=246  Identities=13%  Similarity=0.109  Sum_probs=174.3

Q ss_pred             hccccceeeeCCCCCccccccc--cccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRG--MIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      ..||+|.||+|....  .. +.  .++.|.............-.++..++...+||||+.++.....+...+        
T Consensus        35 G~G~fg~Vy~~~~~~--~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~--------  103 (299)
T d1jpaa_          35 GAGEFGEVCSGHLKL--PG-KREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVM--------  103 (299)
T ss_dssp             EECSSSEEEEEEECC------CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE--------
T ss_pred             eeCCCeEEEEEEEeC--CC-CEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE--------
Confidence            445899999997521  11 11  233333322222223334567888899999999999887755443333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              .+||||+||+|.+++......+++.+++.|++||++||.|||++||+||||||+||||+.++.+||+|||++
T Consensus       104 --------iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla  175 (299)
T d1jpaa_         104 --------IITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLS  175 (299)
T ss_dssp             --------EEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---
T ss_pred             --------EEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccc
Confidence                    389999999999999887777899899999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.+......                                                                       
T Consensus       176 ~~~~~~~~~-----------------------------------------------------------------------  184 (299)
T d1jpaa_         176 RFLEDDTSD-----------------------------------------------------------------------  184 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEccCCCCc-----------------------------------------------------------------------
Confidence            875521100                                                                       


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSE  532 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~  532 (1092)
                                                 ..........||+.|||||.+.+..++.++|||||||+||||++ +   |...
T Consensus       185 ---------------------------~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~  237 (299)
T d1jpaa_         185 ---------------------------PTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDM  237 (299)
T ss_dssp             --------------------------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             ---------------------------ceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCC
Confidence                                       00001113468899999999999999999999999999999997 4   4333


Q ss_pred             HHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          533 RALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       533 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ... ..+..+.....++.....++.+.+|+.+||++||.+|||+.||++.
T Consensus       238 ~~~-~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~  286 (299)
T d1jpaa_         238 TNQ-DVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNT  286 (299)
T ss_dssp             CHH-HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            332 2333333333344455678889999999999999999999999986

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-37  Score=343.19  Aligned_cols=250  Identities=14%  Similarity=0.057  Sum_probs=186.2

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      -..||+|+||+|....  ...+..+|.|+..............++..++...+||||+.++.....+. .+         
T Consensus        17 iG~G~fg~Vy~~~~~~--~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~-~~---------   84 (285)
T d1u59a_          17 LGCGNFGSVRQGVYRM--RKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEA-LM---------   84 (285)
T ss_dssp             EECCTTEEEEEEEEC-----CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSS-EE---------
T ss_pred             EecccCeEEEEEEEec--CCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCe-EE---------
Confidence            4567899999996421  11123456655433223333445567888899999999999876543221 11         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+||||+||+|.+++......++..+++.|+.||++||+|||++||+||||||+||||+.++.+||+|||+++
T Consensus        85 -------lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~  157 (285)
T d1u59a_          85 -------LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSK  157 (285)
T ss_dssp             -------EEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             -------EEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhh
Confidence                   3899999999999997776678888999999999999999999999999999999999999999999999998


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+......                                                                        
T Consensus       158 ~~~~~~~~------------------------------------------------------------------------  165 (285)
T d1u59a_         158 ALGADDSY------------------------------------------------------------------------  165 (285)
T ss_dssp             ECTTCSCE------------------------------------------------------------------------
T ss_pred             cccccccc------------------------------------------------------------------------
Confidence            75421000                                                                        


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~  533 (1092)
                                                  ....+...||+.|+|||++.+..++.++|||||||+||||++ |   |....
T Consensus       166 ----------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~  217 (285)
T d1u59a_         166 ----------------------------YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK  217 (285)
T ss_dssp             ----------------------------ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             ----------------------------cccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCC
Confidence                                        000114568999999999999999999999999999999997 4   44332


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHH---hhhhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREI---LQSEVTNE  587 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~ei---L~~~~~~~  587 (1092)
                      . ...+..+.....++.....++++.+|+.+||++||.+|||+.+|   |+++|+.-
T Consensus       218 ~-~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~~  273 (285)
T d1u59a_         218 G-PEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL  273 (285)
T ss_dssp             T-HHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence            2 22333333333344445567899999999999999999999888   55677643

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-37  Score=336.94  Aligned_cols=239  Identities=16%  Similarity=0.105  Sum_probs=176.2

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..||+|.||+|...+     +..+|.|+....  ......-.++..++...+||||+.++.....+...+          
T Consensus        14 G~G~fg~Vy~~~~~~-----~~~vAvK~i~~~--~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~----------   76 (263)
T d1sm2a_          14 GSGQFGLVHLGYWLN-----KDKVAIKTIREG--AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPIC----------   76 (263)
T ss_dssp             ECCSSCCEEEEEETT-----TEEEEEEECCSS--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE----------
T ss_pred             eeCCCeEEEEEEECC-----CCEEEEEEECCC--cCcHHHHHHHHHHHHhcCCCCcccccceeccCCceE----------
Confidence            345789999998754     345666654321  222234567788899999999999887765444333          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+||||++|+|.+++......+++..++.|+.||+.||+|||++||+||||||+||||+.++.+||+|||+++.
T Consensus        77 ------lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~  150 (263)
T d1sm2a_          77 ------LVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRF  150 (263)
T ss_dssp             ------EEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC----
T ss_pred             ------EEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchhee
Confidence                  38999999999999988777788889999999999999999999999999999999999999999999999977


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ......                                                                          
T Consensus       151 ~~~~~~--------------------------------------------------------------------------  156 (263)
T d1sm2a_         151 VLDDQY--------------------------------------------------------------------------  156 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCc--------------------------------------------------------------------------
Confidence            541100                                                                          


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                  .......||+.|+|||++.+..|+.++|||||||+||||+++   +......
T Consensus       157 ----------------------------~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~  208 (263)
T d1sm2a_         157 ----------------------------TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN  208 (263)
T ss_dssp             ------------------------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCH
T ss_pred             ----------------------------eeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCH
Confidence                                        001135689999999999999999999999999999999983   2222222


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ...+..+.....++.....++++.+|+.+||++||.+|||++||+++
T Consensus       209 ~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~  255 (263)
T d1sm2a_         209 SEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ  255 (263)
T ss_dssp             HHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence            23333333333333334457889999999999999999999999986

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.3e-37  Score=343.15  Aligned_cols=249  Identities=15%  Similarity=0.089  Sum_probs=190.2

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCch--------hhHhhhhhhhhhccCC-CCCCCcccccee
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPS--------DAALKAAGAMMVASNA-SPKPVGVGTAVV  282 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  282 (1092)
                      |.+.+.+  |+.|+||++...+    .+..+|.|+..-.....        ......++..++.... ||||+.+++...
T Consensus         5 y~~~~~iG~G~~g~V~~~~~~~----~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~   80 (277)
T d1phka_           5 YEPKEILGRGVSSVVRRCIHKP----TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   80 (277)
T ss_dssp             EEEEEEEEECSSEEEEEEEETT----TTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             CEEceEEecCcCeEEEEEEECC----CCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence            4444444  3689999997522    24566666643222111        1123456666777765 999999888766


Q ss_pred             cCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEE
Q 001366          283 SNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKL  362 (1092)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill  362 (1092)
                      .+...+                .+||||+||+|.++|+..+ .+++.+++.|+.||+.||+|||++||+||||||+|||+
T Consensus        81 ~~~~~~----------------ivmE~~~~g~L~~~l~~~~-~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill  143 (277)
T d1phka_          81 TNTFFF----------------LVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILL  143 (277)
T ss_dssp             CSSEEE----------------EEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred             cCcceE----------------EEEEcCCCchHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEE
Confidence            555444                3899999999999998766 47788999999999999999999999999999999999


Q ss_pred             ccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccC
Q 001366          363 LQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN  442 (1092)
Q Consensus       363 ~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1092)
                      +.++.+||+|||+++.+...                                                            
T Consensus       144 ~~~~~~kl~DFG~a~~~~~~------------------------------------------------------------  163 (277)
T d1phka_         144 DDDMNIKLTDFGFSCQLDPG------------------------------------------------------------  163 (277)
T ss_dssp             CTTCCEEECCCTTCEECCTT------------------------------------------------------------
T ss_pred             cCCCCeEEccchheeEccCC------------------------------------------------------------
Confidence            99999999999999774410                                                            


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC------CCCCccccch
Q 001366          443 ESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG------GVCTTSSNIY  516 (1092)
Q Consensus       443 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~------~~~t~~sDIw  516 (1092)
                                                                  ...+..+||+.|+|||.+.+      ..++.++|||
T Consensus       164 --------------------------------------------~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~Diw  199 (277)
T d1phka_         164 --------------------------------------------EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMW  199 (277)
T ss_dssp             --------------------------------------------CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHH
T ss_pred             --------------------------------------------CceeeeeccCCCCCHHHhhccccccCCCCCchheEc
Confidence                                                        00114579999999999864      3478999999


Q ss_pred             hhhHHHHHHcCC---CCcHHHHHHHHHhccccC--CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          517 SLGVLFFELFGR---FDSERALAAAMSDLRDRI--LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       517 SLGvll~ell~~---f~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ||||+||||++|   |.+..........+....  ..+.....++++.+|+.+||.+||.+|||+.|||+||||++
T Consensus       200 slGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h~~~~~  275 (277)
T d1phka_         200 STGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQ  275 (277)
T ss_dssp             HHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCT
T ss_pred             ccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHHHH
Confidence            999999999985   666555554444444332  23445567899999999999999999999999999999975

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=342.17  Aligned_cols=250  Identities=14%  Similarity=0.072  Sum_probs=187.9

Q ss_pred             hhHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          212 SEFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       212 ~~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .+|.+.+.+  ||+|.||+|...+     +..+|.|+.....  .....-.++..++...+||||+.++.... +...+ 
T Consensus        13 ~~~~~~~~iG~G~fg~Vy~~~~~~-----~~~vAvK~~~~~~--~~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~-   83 (272)
T d1qpca_          13 ETLKLVERLGAGQFGEVWMGYYNG-----HTKVAVKSLKQGS--MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIY-   83 (272)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETT-----TEEEEEEEECTTS--SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE-
T ss_pred             HHeEEeEEEecCCCcEEEEEEECC-----CCEEEEEEEccCc--CCHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeE-
Confidence            344444444  5899999998644     3456666543222  22344567788899999999999875432 11112 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNAR-GHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~-~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                     .+||||++|+|.+++... +..++..+++.|+.||++||.|||++||+||||||+||||+.++.+
T Consensus        84 ---------------iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~  148 (272)
T d1qpca_          84 ---------------IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSC  148 (272)
T ss_dssp             ---------------EEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCE
T ss_pred             ---------------EEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccce
Confidence                           389999999999988443 3358888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++.+.+..                                                                 
T Consensus       149 Kl~DFGla~~~~~~~-----------------------------------------------------------------  163 (272)
T d1qpca_         149 KIADFGLARLIEDNE-----------------------------------------------------------------  163 (272)
T ss_dssp             EECCCTTCEECSSSC-----------------------------------------------------------------
T ss_pred             eeccccceEEccCCc-----------------------------------------------------------------
Confidence            999999998754110                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                           ....+...||+.|||||++.+..++.++|||||||+||||+|+
T Consensus       164 -------------------------------------~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~  206 (272)
T d1qpca_         164 -------------------------------------YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTH  206 (272)
T ss_dssp             -------------------------------------EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTT
T ss_pred             -------------------------------------cccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhC
Confidence                                                 0001145688999999999999999999999999999999984


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh--hhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ--SEVTNE  587 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~--~~~~~~  587 (1092)
                         +.........+..+.....++.....++++.+|+.+||++||.+|||+.+|++  ++||..
T Consensus       207 ~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~fts  270 (272)
T d1qpca_         207 GRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (272)
T ss_dssp             TCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhhc
Confidence               22222333344444444444444556788999999999999999999999998  788864

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-37  Score=349.08  Aligned_cols=246  Identities=19%  Similarity=0.200  Sum_probs=180.5

Q ss_pred             hHHHh-h--hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhh-hccCCCCCCCccccceec----C
Q 001366          213 EFFVK-T--TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMM-VASNASPKPVGVGTAVVS----N  284 (1092)
Q Consensus       213 ~~~~~-~--~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~  284 (1092)
                      .|.|. +  +.||.|+||++...    ..++.+|.|+...      .....++... ++..+|||++.+++....    +
T Consensus        12 ~y~i~~~~lG~G~fg~Vy~a~~~----~~~~~vAiK~i~~------~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~   81 (335)
T d2ozaa1          12 DYKVTSQVLGLGINGKVLQIFNK----RTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAGR   81 (335)
T ss_dssp             TEEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred             CEEEeeEEeeeccCeEEEEEEEC----CCCCEEEEEEECC------cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCC
Confidence            46553 2  45689999999852    2356667766521      1222334433 456689999998765432    1


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                      ...+                .+||||+||+|.++|+..+ ..+++.+++.|++||+.||+|||++||+||||||+|||++
T Consensus        82 ~~~~----------------ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~  145 (335)
T d2ozaa1          82 KCLL----------------IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYT  145 (335)
T ss_dssp             EEEE----------------EEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEES
T ss_pred             CEEE----------------EEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc
Confidence            1122                3899999999999997754 4688989999999999999999999999999999999998


Q ss_pred             c---CCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccc
Q 001366          364 Q---SNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIET  440 (1092)
Q Consensus       364 ~---~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (1092)
                      .   .+.+|++|||+++.....                                                          
T Consensus       146 ~~~~~~~~Kl~DFG~a~~~~~~----------------------------------------------------------  167 (335)
T d2ozaa1         146 SKRPNAILKLTDFGFAKETTSH----------------------------------------------------------  167 (335)
T ss_dssp             CSSTTCCEEECCCTTCEECCCC----------------------------------------------------------
T ss_pred             cccccccccccccceeeeccCC----------------------------------------------------------
Confidence            5   457999999998764410                                                          


Q ss_pred             cCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhH
Q 001366          441 ANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGV  520 (1092)
Q Consensus       441 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGv  520 (1092)
                                                                    ......+||++|||||++.+..|+.++|||||||
T Consensus       168 ----------------------------------------------~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGv  201 (335)
T d2ozaa1         168 ----------------------------------------------NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGV  201 (335)
T ss_dssp             ----------------------------------------------CCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHH
T ss_pred             ----------------------------------------------CccccccCCcccCCcHHHcCCCCCHHHHHHhhch
Confidence                                                          0012457999999999999999999999999999


Q ss_pred             HHHHHcCC---CCcHHH---HHHHHHhccccC--CC-CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          521 LFFELFGR---FDSERA---LAAAMSDLRDRI--LP-PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       521 ll~ell~~---f~~~~~---~~~~~~~~~~~~--~p-~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      +||||++|   |.+...   .......+....  +| +.+...++++.+||.+||++||++|||+.|+|+||||.+.
T Consensus       202 ily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~  278 (335)
T d2ozaa1         202 IMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS  278 (335)
T ss_dssp             HHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHSHHHHTT
T ss_pred             hHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHhhCC
Confidence            99999996   433322   112222222211  22 2223467889999999999999999999999999999754

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-37  Score=340.03  Aligned_cols=239  Identities=16%  Similarity=0.088  Sum_probs=183.7

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..||+|+||+|...    ..+..+|.|+......  ....-.++..++...+||||+.++.....+...+          
T Consensus        26 G~G~fg~Vy~a~~~----~~~~~vAvK~i~~~~~--~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~----------   89 (287)
T d1opja_          26 GGGQYGEVYEGVWK----KYSLTVAVKTLKEDTM--EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY----------   89 (287)
T ss_dssp             TTTTTSSEEEEEEG----GGTEEEEEEECCTTCS--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE----------
T ss_pred             eeCCCeEEEEEEEC----CCCeEEEEEEECCccc--hHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeE----------
Confidence            34578999999863    2345567665432222  2334456788899999999999877655433333          


Q ss_pred             cccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                            ++||||++|+|.++|.. ....+++..++.|+.||+.||+|||++||+||||||+||||+.++.+||+|||+++
T Consensus        90 ------iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~  163 (287)
T d1opja_          90 ------IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSR  163 (287)
T ss_dssp             ------EEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTT
T ss_pred             ------EEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEcccccee
Confidence                  38999999999999965 34568888999999999999999999999999999999999999999999999997


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      ......                                                                          
T Consensus       164 ~~~~~~--------------------------------------------------------------------------  169 (287)
T d1opja_         164 LMTGDT--------------------------------------------------------------------------  169 (287)
T ss_dssp             TCCSSS--------------------------------------------------------------------------
T ss_pred             ecCCCC--------------------------------------------------------------------------
Confidence            644100                                                                          


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                  ....+...||+.|+|||++.+..|+.++|||||||+||||+++   |.....
T Consensus       170 ----------------------------~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~  221 (287)
T d1opja_         170 ----------------------------YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID  221 (287)
T ss_dssp             ----------------------------SEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ----------------------------ceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcch
Confidence                                        0011134588899999999999999999999999999999983   333333


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ....+..+.....++.....++++.+|+.+||++||.+|||++||++
T Consensus       222 ~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~  268 (287)
T d1opja_         222 LSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  268 (287)
T ss_dssp             HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence            34444444444444445566889999999999999999999999976

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-33  Score=316.48  Aligned_cols=289  Identities=13%  Similarity=0.159  Sum_probs=235.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEE
Q 001366          778 SANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWD  857 (1092)
Q Consensus       778 h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD  857 (1092)
                      +.+.+..++++|+|+.||.++ ++.|.+|++...       .......+|...|+|++|+|+ +++||+|+.||+|+|||
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~-------~~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd   86 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL-------TDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWD   86 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS-------SCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCC-------ceeEEEcCCCCCEEEEEEeCC-CCeEeccccCceEeeee
Confidence            444556789999999999986 667999998752       122334579999999999998 99999999999999999


Q ss_pred             CCCCce--EEEeeccCccEEEEEEecCCCCEEEEEeC--CCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEE
Q 001366          858 ACTGQT--VSHYIEHEKRAWSVDFSQVHPTKLASGSD--DCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       858 ~~tg~~--i~~l~~h~~~V~sv~fsp~~~~~laSgs~--Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latg  932 (1092)
                      +.+++.  ...+..|...|.+++|+| ++..|++++.  +..++|||+.+++.+.++. |...|.+++|+|++..+|++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg  165 (311)
T d1nr0a1          87 TTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG  165 (311)
T ss_dssp             SSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred             eeccccccccccccccCccccccccc-cccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            988764  356788999999999999 8889998886  4669999999999888887 567899999999998789999


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~ 1011 (1092)
                      +.|+.|++||+++.+ ....+.+|...|.++.|+ ++.+|++++.|+.|++||+.......... .......+|...|++
T Consensus       166 s~d~~i~i~d~~~~~-~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~~h~~~V~~  243 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE-DDSLKNVAHSGSVFG  243 (311)
T ss_dssp             ETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB-CTTSSSCSSSSCEEE
T ss_pred             ccccccccccccccc-cccccccccccccccccCcccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence            999999999999865 467788999999999999 67789999999999999998543211000 011123468899999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1012 VGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1012 v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++|+|++.+|++|+.||.|+|||..+++.+..+..+.           .+...+.++.|+  +..|++++.||.|++||+
T Consensus       244 ~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~-----------~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-----------RIEDQQLGIIWT--KQALVSISANGFINFVNP  310 (311)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-----------SGGGCEEEEEEC--SSCEEEEETTCCEEEEET
T ss_pred             cccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC-----------CccceEEEEEec--CCEEEEEECCCEEEEEeC
Confidence            9999999999999999999999999998887765311           112335555555  557999999999999985

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=336.08  Aligned_cols=247  Identities=13%  Similarity=0.090  Sum_probs=179.7

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..||+|.||+|...+.-......+|.|+............-.++..++...+||||+.++.........+          
T Consensus        16 G~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~----------   85 (283)
T d1mqba_          16 GAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM----------   85 (283)
T ss_dssp             EECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE----------
T ss_pred             eeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceE----------
Confidence            3457899999976321111122355555432222222333457888899999999999877654333222          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+||||.+++|.+++......++..+++.|+.||+.||+|||++||+||||||+||||+.++.+||+|||+++.
T Consensus        86 ------~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~  159 (283)
T d1mqba_          86 ------IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRV  159 (283)
T ss_dssp             ------EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             ------EEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhc
Confidence                  38999999999999988777889989999999999999999999999999999999999999999999999987


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      +.....                                                                          
T Consensus       160 ~~~~~~--------------------------------------------------------------------------  165 (283)
T d1mqba_         160 LEDDPE--------------------------------------------------------------------------  165 (283)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCc--------------------------------------------------------------------------
Confidence            542100                                                                          


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSERAL  535 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~~~  535 (1092)
                                                .........||+.|||||.+.+..++.++|||||||+||||+++   +......
T Consensus       166 --------------------------~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~  219 (283)
T d1mqba_         166 --------------------------ATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN  219 (283)
T ss_dssp             ----------------------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred             --------------------------cceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCH
Confidence                                      00011145689999999999999999999999999999999983   3222233


Q ss_pred             HHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          536 AAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       536 ~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      .+.+..+.....++.....++.+.+|+.+||++||.+|||+.||++
T Consensus       220 ~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~  265 (283)
T d1mqba_         220 HEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS  265 (283)
T ss_dssp             HHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHH
Confidence            3444555555555555566788999999999999999999999987

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=336.24  Aligned_cols=247  Identities=13%  Similarity=0.050  Sum_probs=181.2

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCC
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPA  297 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (1092)
                      ..||+|.||+|...+  ...+..+|.|+...... ........++..++...+||||+.++.....+ ..+         
T Consensus        16 G~G~fG~Vy~~~~~~--~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-~~~---------   83 (277)
T d1xbba_          16 GSGNFGTVKKGYYQM--KKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SWM---------   83 (277)
T ss_dssp             EECSSEEEEEEEEEC--SSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-SEE---------
T ss_pred             ccCCCeEEEEEEEcc--CCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC-CEE---------
Confidence            456899999996422  11234566666533222 22234456778889999999999987653221 111         


Q ss_pred             ccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          298 SCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       298 ~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                             .+||||+||+|.+++.... .+++.+++.|+.||+.||+|||++||+||||||+||||+.++.+|++|||+++
T Consensus        84 -------lvmE~~~~g~L~~~l~~~~-~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~  155 (277)
T d1xbba_          84 -------LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSK  155 (277)
T ss_dssp             -------EEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             -------EEEEcCCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhh
Confidence                   3899999999999997654 47788999999999999999999999999999999999999999999999998


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .+......                                                                        
T Consensus       156 ~~~~~~~~------------------------------------------------------------------------  163 (277)
T d1xbba_         156 ALRADENY------------------------------------------------------------------------  163 (277)
T ss_dssp             ECCTTCSE------------------------------------------------------------------------
T ss_pred             hccccccc------------------------------------------------------------------------
Confidence            75411000                                                                        


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C---CCcHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R---FDSER  533 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~---f~~~~  533 (1092)
                                                  ........||+.|||||.+.+..++.++|||||||+||||++ +   |....
T Consensus       164 ----------------------------~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~  215 (277)
T d1xbba_         164 ----------------------------YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  215 (277)
T ss_dssp             ----------------------------EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             ----------------------------cccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCC
Confidence                                        000114568999999999999999999999999999999997 4   44333


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHh---hhhhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREIL---QSEVTN  586 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL---~~~~~~  586 (1092)
                      .. +....+.....++.....++++.+|+.+||+.||.+|||+++|+   +++|+.
T Consensus       216 ~~-~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  270 (277)
T d1xbba_         216 GS-EVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  270 (277)
T ss_dssp             HH-HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHHhh
Confidence            22 33333333333444455688899999999999999999999984   555553

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-32  Score=305.29  Aligned_cols=283  Identities=15%  Similarity=0.232  Sum_probs=241.9

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .|.+|.+.|++|+|+|++++||||+.|++|+|||+.+.       ........|...|.+++|+|+ +.++++|+.|+++
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~-------~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~~i  121 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-------NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNIC  121 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT-------EEEEEEECSCSCEEEEEECTT-SSEEEEEETTCCE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc-------eeEEEEecccccEEeeEeecc-ceeeeeeccccee
Confidence            47799999999999999999999999999999998752       223344568999999999998 8999999999999


Q ss_pred             EEEECCCC----ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeE
Q 001366          854 KLWDACTG----QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHL  928 (1092)
Q Consensus       854 ~IWD~~tg----~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~  928 (1092)
                      ++|+....    .....+.+|...........  ...++.+..|.....|+........... ....+.+..+.+.+. +
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  198 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-L  198 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-E
T ss_pred             ecccccccccccccceeccccccccccccccc--ccccccccccccccccccccccccccccccceeEeeeccccccc-e
Confidence            99997654    35667788888777666665  5678888999999999988776655544 567789999998885 8


Q ss_pred             EEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEE--cCC
Q 001366          929 LAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTF--SGH 1005 (1092)
Q Consensus       929 latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l--~~h 1005 (1092)
                      +++|+.|+.|++||+++.+ ++..+.+|...|++++|+ ++.+|++|+.|+.|++||++.        ......+  ..|
T Consensus       199 ~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~--------~~~~~~~~~~~~  269 (340)
T d1tbga_         199 FVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA--------DQELMTYSHDNI  269 (340)
T ss_dssp             EEEEETTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------TEEEEEECCTTC
T ss_pred             eEEeecCceEEEEECCCCc-EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc--------cccccccccccc
Confidence            9999999999999999875 467889999999999998 677899999999999999983        3334443  457


Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCe
Q 001366         1006 TNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGC 1085 (1092)
Q Consensus      1006 ~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~ 1085 (1092)
                      ...|.+++|+|++.+|++|+.||.|+|||...++++..+              .+|...|++|+|+|++.+|+||+.||.
T Consensus       270 ~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--------------~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--------------AGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             CSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE--------------CCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             cCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE--------------cCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            778999999999999999999999999999988877655              467889999999999999999999999


Q ss_pred             EEEEE
Q 001366         1086 IKVLQ 1090 (1092)
Q Consensus      1086 V~vW~ 1090 (1092)
                      |+||+
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99996

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=337.93  Aligned_cols=258  Identities=14%  Similarity=0.102  Sum_probs=182.0

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhh---hhccCCCCCCCccccceecCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAM---MVASNASPKPVGVGTAVVSNGS  286 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  286 (1092)
                      .|.+.+.++  +.|+||++....   ..++.+|.|+....... .......++..   .+...+||||+.+++.......
T Consensus         8 ~Y~i~~~LG~G~fg~V~~a~~~~---~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~   84 (305)
T d1blxa_           8 QYECVAEIGEGAYGKVFKARDLK---NGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   84 (305)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETT---TTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             CEEEEEEEecccCeEEEEEEEEC---CCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc
Confidence            455555554  789999997411   11344566654222211 11122223333   3445589999987766432111


Q ss_pred             CCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC
Q 001366          287 LDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN  366 (1092)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~  366 (1092)
                      ..    ...       ...+||||+|+.+..........++...++.|++||+.||+|||++||+||||||+|||++..+
T Consensus        85 ~~----~~~-------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~  153 (305)
T d1blxa_          85 DR----ETK-------LTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSG  153 (305)
T ss_dssp             SS----EEE-------EEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC
T ss_pred             cc----Cce-------EEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCC
Confidence            00    000       1137999999988877776767788889999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccc
Q 001366          367 QVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDI  446 (1092)
Q Consensus       367 ~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (1092)
                      .+|++|||+++.....                                                                
T Consensus       154 ~~kl~dfg~~~~~~~~----------------------------------------------------------------  169 (305)
T d1blxa_         154 QIKLADFGLARIYSFQ----------------------------------------------------------------  169 (305)
T ss_dssp             CEEECSCCSCCCCCGG----------------------------------------------------------------
T ss_pred             Ceeecchhhhhhhccc----------------------------------------------------------------
Confidence            9999999987653310                                                                


Q ss_pred             ccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHc
Q 001366          447 NEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       447 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell  526 (1092)
                                                              ......+||+.|||||++.+..|+.++|||||||+||||+
T Consensus       170 ----------------------------------------~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell  209 (305)
T d1blxa_         170 ----------------------------------------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMF  209 (305)
T ss_dssp             ----------------------------------------GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHH
Confidence                                                    0112567999999999999999999999999999999999


Q ss_pred             CC---CCcHHHHHHHHHhccc--c-----------------------CCCCCCCCCChhHHHHHHhccccCCCCCCCHHH
Q 001366          527 GR---FDSERALAAAMSDLRD--R-----------------------ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTRE  578 (1092)
Q Consensus       527 ~~---f~~~~~~~~~~~~~~~--~-----------------------~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e  578 (1092)
                      ++   |.+..........+..  .                       ..+......++.+.+|+.+||++||.+|||+.|
T Consensus       210 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e  289 (305)
T d1blxa_         210 RRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYS  289 (305)
T ss_dssp             HSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             HCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHH
Confidence            86   6554433332222110  0                       001112345678899999999999999999999


Q ss_pred             Hhhhhhhhhh
Q 001366          579 ILQSEVTNEF  588 (1092)
Q Consensus       579 iL~~~~~~~~  588 (1092)
                      +|+||||.+.
T Consensus       290 ~L~Hpff~~i  299 (305)
T d1blxa_         290 ALSHPYFQDL  299 (305)
T ss_dssp             HHTSGGGTTC
T ss_pred             HhcChhhcCc
Confidence            9999999875

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-36  Score=335.43  Aligned_cols=249  Identities=15%  Similarity=0.135  Sum_probs=184.4

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .|+.|+||++...    ..++.+|.|++...... .......++..++...+||||+.+++....+...+          
T Consensus        12 ~G~fg~Vy~~~~~----~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~----------   77 (298)
T d1gz8a_          12 EGTYGVVYKARNK----LTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLY----------   77 (298)
T ss_dssp             ECSSSEEEEEEET----TTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE----------
T ss_pred             cCcCeEEEEEEEC----CCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEecccccccccee----------
Confidence            3578999999752    23566777765322221 12344556788889999999999988877655544          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            .+||||.|+.+..........+++.+++.|+.||+.||+|||++|||||||||+|||++.++.+|++|||+++.
T Consensus        78 ------iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~  151 (298)
T d1gz8a_          78 ------LVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARA  151 (298)
T ss_dssp             ------EEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHH
T ss_pred             ------EEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCccee
Confidence                  38999987655555455556688889999999999999999999999999999999999999999999999976


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ...+.                                                                           
T Consensus       152 ~~~~~---------------------------------------------------------------------------  156 (298)
T d1gz8a_         152 FGVPV---------------------------------------------------------------------------  156 (298)
T ss_dssp             HCCCS---------------------------------------------------------------------------
T ss_pred             ccCCc---------------------------------------------------------------------------
Confidence            43100                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC-CCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV-CTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~-~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                  .......||+.|+|||++.... ++.++|||||||+||||++|   |.+...
T Consensus       157 ----------------------------~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~  208 (298)
T d1gz8a_         157 ----------------------------RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE  208 (298)
T ss_dssp             ----------------------------BCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             ----------------------------ccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCH
Confidence                                        0112457899999999987755 58999999999999999986   555443


Q ss_pred             HHHHHHhccccCC-------------------C--------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          535 LAAAMSDLRDRIL-------------------P--------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       535 ~~~~~~~~~~~~~-------------------p--------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ........+....                   +        ..+...++++.+|+.+||++||.+|||+.|||+||||.+
T Consensus       209 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~  288 (298)
T d1gz8a_         209 IDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQD  288 (298)
T ss_dssp             HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTT
T ss_pred             HHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhcc
Confidence            3333322211000                   0        012345678899999999999999999999999999987


Q ss_pred             hhcc
Q 001366          588 FQEV  591 (1092)
Q Consensus       588 ~~~~  591 (1092)
                      ...+
T Consensus       289 ~~~p  292 (298)
T d1gz8a_         289 VTKP  292 (298)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-33  Score=319.58  Aligned_cols=296  Identities=16%  Similarity=0.158  Sum_probs=233.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEEC
Q 001366          779 ANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDA  858 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~  858 (1092)
                      .++|+|++|+|+|++||+|+.|+.|+||++...     .........+|..+|.+++|+|+ +++|++|+.|++|+|||+
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~-----~~~~~~~l~gH~~~V~~l~fsp~-~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-----KWVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-----EEEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCC-----CEEEEEEecCCCCCEEEEEECCC-CCEEEEEECCCeEEEEee
Confidence            468999999999999999999999999998641     11222345689999999999998 899999999999999999


Q ss_pred             CCCce--EEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-----cCCceEEEEEccCCCeEEEE
Q 001366          859 CTGQT--VSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-----NIANVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       859 ~tg~~--i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-----~~~~V~sl~fsp~~~~~lat  931 (1092)
                      .++..  ...+.+|...|++++|+| ++..|++|+.|++|++|++..........     +...|.+++|+|++. +|++
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s  158 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAA  158 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEE
T ss_pred             ccccccccccccccccccccccccc-ccccceeecccCcceeeeeeccccccccccccccccccccccccccccc-ceec
Confidence            87754  445568899999999999 88999999999999999998766543332     467899999999985 8999


Q ss_pred             EECCCeEEEEEcCCCC-----------------cceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCC
Q 001366          932 GSADYRTYCYDLRNAR-----------------APWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGP  993 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~-----------------~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~  993 (1092)
                      |+.|+.|++||+....                 .......+|...|.+++|+ ++.+|++++.|++|++||+.       
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~-------  231 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD-------  231 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG-------
T ss_pred             cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeee-------
Confidence            9999999999986532                 1234557899999999998 67889999999999999998       


Q ss_pred             CCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeec--c-----------------ccC----
Q 001366          994 STNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKF--G-----------------SID---- 1050 (1092)
Q Consensus       994 ~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~--~-----------------~~~---- 1050 (1092)
                       .+.++..+..|..+|++++|+|++.+|++|+ |+.+++|..........+..  .                 ..+    
T Consensus       232 -~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (371)
T d1k8kc_         232 -KKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS  309 (371)
T ss_dssp             -GTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred             -cccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeE
Confidence             4567888999999999999999998888765 66666665433222211110  0                 000    


Q ss_pred             ----CCCCccccCCCCCCEEEEEEeCCC----CEEEEEecCCeEEEEEc
Q 001366         1051 ----PISGKETDDDNGLFVSSVCWRRRS----DMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1051 ----~i~~~~~~~~h~~~V~sva~spd~----~~Lasgs~DG~V~vW~l 1091 (1092)
                          ..........|...|++|++.+.+    ..++|+|.||.|+||++
T Consensus       310 ~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         310 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             --------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             EeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence                000111223588899999998854    46899999999999996

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-36  Score=336.73  Aligned_cols=254  Identities=15%  Similarity=0.123  Sum_probs=173.6

Q ss_pred             hHHHhhhc--cccceeeeCCCCCc-cccccccccccccccccCchhhHhhhhhhhh-hccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNA-FKERRGMIDTKAFVTTTMPSDAALKAAGAMM-VASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      +|.+.+.+  ||+|.||+|..... -...+..+|.|+..............+++.. .....|+|++..+......... 
T Consensus        14 ~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~-   92 (299)
T d1ywna1          14 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP-   92 (299)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSC-
T ss_pred             HEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCe-
Confidence            34444444  57899999874211 0112345666554322222222333333333 4445788888755543322111 


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCcccc
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGVTFL  353 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHr  353 (1092)
                                    ...+||||+||+|.++|+...               ..++..+++.|+.||++||.|||++||+||
T Consensus        93 --------------~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHr  158 (299)
T d1ywna1          93 --------------LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHR  158 (299)
T ss_dssp             --------------CEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             --------------EEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence                          123799999999999996542               247788999999999999999999999999


Q ss_pred             CCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCc
Q 001366          354 DLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSK  433 (1092)
Q Consensus       354 DLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (1092)
                      ||||+||||+.++.+||+|||+++.......                                                 
T Consensus       159 DlKp~NILl~~~~~~Kl~DFGla~~~~~~~~-------------------------------------------------  189 (299)
T d1ywna1         159 DLAARNILLSEKNVVKICDFGLARDIYKDPD-------------------------------------------------  189 (299)
T ss_dssp             CCCGGGEEECGGGCEEECC------CCSCTT-------------------------------------------------
T ss_pred             cCCccceeECCCCcEEEccCcchhhcccccc-------------------------------------------------
Confidence            9999999999999999999999986441100                                                 


Q ss_pred             cCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccc
Q 001366          434 YGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSS  513 (1092)
Q Consensus       434 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~s  513 (1092)
                                                                          ....+...||+.|||||++.+..++.++
T Consensus       190 ----------------------------------------------------~~~~~~~~gt~~y~APE~l~~~~~~~~s  217 (299)
T d1ywna1         190 ----------------------------------------------------YVRKGDARLPLKWMAPETIFDRVYTIQS  217 (299)
T ss_dssp             ----------------------------------------------------SCCTTSCCCGGGGCCHHHHHHCCCCHHH
T ss_pred             ----------------------------------------------------ccccCceeeCccccchhHhhcCCCCccc
Confidence                                                                0011246799999999999999999999


Q ss_pred             cchhhhHHHHHHcCC----CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          514 NIYSLGVLFFELFGR----FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       514 DIwSLGvll~ell~~----f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      |||||||+||||+++    |............+.....++.....++++.+|+.+||++||.+|||+.||++|
T Consensus       218 DiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         218 DVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            999999999999973    443333334444445444455555568899999999999999999999999987

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-36  Score=331.73  Aligned_cols=249  Identities=14%  Similarity=0.083  Sum_probs=174.2

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      +|.+.+.+  ||+|+||+|..... ......++.|+......+.......++..++...+||||+.++.... +...+  
T Consensus         8 ~~~l~~~iG~G~fg~Vy~a~~~~~-~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~--   83 (273)
T d1mp8a_           8 RIELGRCIGEGQFGDVHQGIYMSP-ENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW--   83 (273)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECCC---CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE--
T ss_pred             HeEEEEEEeeCCCcEEEEEEEecC-CceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEE--
Confidence            34444444  47899999965221 01012233333322222323344567778888999999999877543 21112  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    .+||||+||+|.+++......++..+++.++.||++||.|||++||+||||||+||+++.++.+|+
T Consensus        84 --------------iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl  149 (273)
T d1mp8a_          84 --------------IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKL  149 (273)
T ss_dssp             --------------EEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEE
T ss_pred             --------------EEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEE
Confidence                          389999999999999877777898899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.+....                                                                   
T Consensus       150 ~DfG~a~~~~~~~-------------------------------------------------------------------  162 (273)
T d1mp8a_         150 GDFGLSRYMEDST-------------------------------------------------------------------  162 (273)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccchhheeccCCc-------------------------------------------------------------------
Confidence            9999997644100                                                                   


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                         ....+...||++|+|||++.+..|+.++|||||||+||||++ + 
T Consensus       163 -----------------------------------~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~  207 (273)
T d1mp8a_         163 -----------------------------------YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV  207 (273)
T ss_dssp             -------------------------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSC
T ss_pred             -----------------------------------ceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCC
Confidence                                               000114568999999999999999999999999999999987 4 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                        |...... ..+..+.....++.....++.+.+|+.+||++||.+|||+.||+++
T Consensus       208 ~P~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~  262 (273)
T d1mp8a_         208 KPFQGVKNN-DVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  262 (273)
T ss_dssp             CTTTTCCGG-GHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCHH-HHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence              3322222 2222333333444555678999999999999999999999999876

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=338.28  Aligned_cols=261  Identities=16%  Similarity=0.192  Sum_probs=189.4

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  |+.|.||++..    ...+..+|.|+..............++..++...+|||++.++.....+....   
T Consensus        10 Y~~~~~LG~G~fg~Vy~~~~----~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~---   82 (345)
T d1pmea_          10 YTNLSYIGEGAYGMVCSAYD----NVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQ---   82 (345)
T ss_dssp             EEEEEECC---CCCEEEEEE----TTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTT---
T ss_pred             eEEEEEEeeccCeEEEEEEE----CCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccc---
Confidence            4444444  47899999975    23366777776543333333345567888899999999998776654322111   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                               .....+|+|+.|++|.++++..  .++..+++.+++||+.||+|||++|||||||||+||||+.++.+||+
T Consensus        83 ---------~~~~~l~~~~~~g~L~~~l~~~--~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~  151 (345)
T d1pmea_          83 ---------MKDVYLVTHLMGADLYKLLKTQ--HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKIC  151 (345)
T ss_dssp             ---------CCCEEEEEECCCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEEC
T ss_pred             ---------cceEEEEEeecCCchhhhhhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEc
Confidence                     1112378899999999999765  47888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.......                                                                   
T Consensus       152 DfG~a~~~~~~~~-------------------------------------------------------------------  164 (345)
T d1pmea_         152 DFGLARVADPDHD-------------------------------------------------------------------  164 (345)
T ss_dssp             CCTTCEECCGGGC-------------------------------------------------------------------
T ss_pred             ccCceeeccCCCc-------------------------------------------------------------------
Confidence            9999976541100                                                                   


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~--  528 (1092)
                                                       ........+||+.|+|||++.. ..++.++||||+||++|||++|  
T Consensus       165 ---------------------------------~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~  211 (345)
T d1pmea_         165 ---------------------------------HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRP  211 (345)
T ss_dssp             ---------------------------------BCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSC
T ss_pred             ---------------------------------cceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCC
Confidence                                             0001125689999999999855 5679999999999999999985  


Q ss_pred             -CCcHHHHHHHHHhccccC---------------------C--------CCCCCCCChhHHHHHHhccccCCCCCCCHHH
Q 001366          529 -FDSERALAAAMSDLRDRI---------------------L--------PPSFLSENPKEAGFCLWQLHPEPLSRPTTRE  578 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~---------------------~--------p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~e  578 (1092)
                       |.................                     .        ...+...++++.+|+.+||++||.+|||+.|
T Consensus       212 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e  291 (345)
T d1pmea_         212 IFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQ  291 (345)
T ss_dssp             SCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             CCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHH
Confidence             554333222211111000                     0        0123456788999999999999999999999


Q ss_pred             Hhhhhhhhhhhccc
Q 001366          579 ILQSEVTNEFQEVC  592 (1092)
Q Consensus       579 iL~~~~~~~~~~~~  592 (1092)
                      +|+||||.......
T Consensus       292 ~L~hpf~~~~~~~~  305 (345)
T d1pmea_         292 ALAHPYLEQYYDPS  305 (345)
T ss_dssp             HHTSGGGTTTCCGG
T ss_pred             HhcCHhhccCCCCc
Confidence            99999998765544

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-37  Score=335.87  Aligned_cols=241  Identities=17%  Similarity=0.195  Sum_probs=176.0

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCc-----hhhHhhhhhhhhhccC--CCCCCCccccceecC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-----SDAALKAAGAMMVASN--ASPKPVGVGTAVVSN  284 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  284 (1092)
                      |.+.+.+  ||.|+||+|...    ..+..+|.|+.......     .......++..++...  .||||+.+++....+
T Consensus         6 Y~i~~~lG~G~fg~Vy~a~~~----~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~   81 (273)
T d1xwsa_           6 YQVGPLLGSGGFGSVYSGIRV----SDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP   81 (273)
T ss_dssp             EEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             EEEeEEEeeCCCeEEEEEEEC----CCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeC
Confidence            4444434  478999999862    22455666654221111     1111223444555544  489999988776544


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCC-CCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEc
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHG-VNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLL  363 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G-gsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~  363 (1092)
                      ...+                .+|||+.| ++|.++++..+ .+++.+++.|++||+.||+|||++||+||||||+|||++
T Consensus        82 ~~~~----------------lv~e~~~~~~~l~~~~~~~~-~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~  144 (273)
T d1xwsa_          82 DSFV----------------LILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILID  144 (273)
T ss_dssp             SEEE----------------EEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEE
T ss_pred             CeEE----------------EEEEeccCcchHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEe
Confidence            4433                37999976 68889987664 577879999999999999999999999999999999998


Q ss_pred             cC-CcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccC
Q 001366          364 QS-NQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETAN  442 (1092)
Q Consensus       364 ~~-~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (1092)
                      .+ +.+|++|||+++....                                                             
T Consensus       145 ~~~~~vkl~DFG~a~~~~~-------------------------------------------------------------  163 (273)
T d1xwsa_         145 LNRGELKLIDFGSGALLKD-------------------------------------------------------------  163 (273)
T ss_dssp             TTTTEEEECCCTTCEECCS-------------------------------------------------------------
T ss_pred             cCCCeEEECccccceeccc-------------------------------------------------------------
Confidence            55 7999999999875331                                                             


Q ss_pred             ccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC-CccccchhhhHH
Q 001366          443 ESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC-TTSSNIYSLGVL  521 (1092)
Q Consensus       443 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~-t~~sDIwSLGvl  521 (1092)
                                                                  ...+..+||+.|||||++.+..+ +.++|||||||+
T Consensus       164 --------------------------------------------~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvi  199 (273)
T d1xwsa_         164 --------------------------------------------TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGIL  199 (273)
T ss_dssp             --------------------------------------------SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHH
T ss_pred             --------------------------------------------ccccccccCCCcCCHHHHcCCCCCCcccccccceee
Confidence                                                        00124579999999999987665 678999999999


Q ss_pred             HHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhh
Q 001366          522 FFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       522 l~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ||||+++   |.....   .+   +.....+  ...++++.+||.+||.+||.+|||++|+|+||||.+.
T Consensus       200 lyell~g~~Pf~~~~~---i~---~~~~~~~--~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~  261 (273)
T d1xwsa_         200 LYDMVCGDIPFEHDEE---II---RGQVFFR--QRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDV  261 (273)
T ss_dssp             HHHHHHSSCSCCSHHH---HH---HCCCCCS--SCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSC
T ss_pred             ehhHhhCCCCCCCchH---Hh---hcccCCC--CCCCHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCC
Confidence            9999986   544332   11   1111111  2357899999999999999999999999999999764

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-36  Score=337.60  Aligned_cols=250  Identities=16%  Similarity=0.060  Sum_probs=180.5

Q ss_pred             HHHhhhc--cccceeeeCCCCC-ccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLN-AFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  ||+|.||+|.... +-.. ...++.|.............-.++..++...+||||+.++.....+...   
T Consensus        11 y~~~~~lG~G~fG~Vy~~~~~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~---   86 (317)
T d1xkka_          11 FKKIKVLGSGAFGTVYKGLWIPEGEKV-KIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ---   86 (317)
T ss_dssp             EEEEEEEEECSSEEEEEEEECC----C-CEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEE---
T ss_pred             CEEeeEEecCCCeEEEEEEEcCCCCEE-EEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCee---
Confidence            4444444  4789999997522 1111 1123333332222222233456777888899999999987765432222   


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                                    .+|+|+.+++|.+++......++..+++.|+.||+.||+|||++||+||||||+||||+.++.+||
T Consensus        87 --------------~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl  152 (317)
T d1xkka_          87 --------------LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKI  152 (317)
T ss_dssp             --------------EEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEE
T ss_pred             --------------EEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEe
Confidence                          279999999999999888778999899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.......                                                                  
T Consensus       153 ~DFGla~~~~~~~~------------------------------------------------------------------  166 (317)
T d1xkka_         153 TDFGLAKLLGAEEK------------------------------------------------------------------  166 (317)
T ss_dssp             CCCSHHHHTTTTCC------------------------------------------------------------------
T ss_pred             eccccceecccccc------------------------------------------------------------------
Confidence            99999987541000                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~-  528 (1092)
                                                         ........||+.|||||++.++.|+.++|||||||+||||+| + 
T Consensus       167 -----------------------------------~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~  211 (317)
T d1xkka_         167 -----------------------------------EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGS  211 (317)
T ss_dssp             -------------------------------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             -----------------------------------cccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCC
Confidence                                               000113468999999999999999999999999999999997 3 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSE  583 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~  583 (1092)
                        |... ...+....+.....++.....++.+.+|+.+||+.||.+|||+.||+++.
T Consensus       212 ~p~~~~-~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l  267 (317)
T d1xkka_         212 KPYDGI-PASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEF  267 (317)
T ss_dssp             CTTTTS-CGGGHHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCC-CHHHHHHHHHcCCCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHH
Confidence              3322 12223333333333444455678899999999999999999999999883

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-32  Score=309.62  Aligned_cols=285  Identities=20%  Similarity=0.208  Sum_probs=241.3

Q ss_pred             ccchhhhhhccccccCCCCc-EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001366          728 DRENLFLAQQDQEIQNPTDR-LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIF  806 (1092)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~-l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iw  806 (1092)
                      .|.+.+.++.+    +|++. |....|+.+++|++........+......+|...|.+++|+|+|++|++|+.|++|+||
T Consensus        49 ~H~~~V~~v~f----s~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iw  124 (337)
T d1gxra_          49 NHGEVVCAVTI----SNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             CCSSCCCEEEE----CSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             CCCCcEEEEEE----CCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccc
Confidence            45556655543    45554 33345899999998765444444444566899999999999999999999999999999


Q ss_pred             EcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCE
Q 001366          807 EFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK  886 (1092)
Q Consensus       807 d~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~  886 (1092)
                      |+....     .........|...|.+++|+|+ +.++++++.|+.|++||+.+++......+|...|++++|++ ++..
T Consensus       125 d~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~  197 (337)
T d1gxra_         125 DLAAPT-----PRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTK  197 (337)
T ss_dssp             ECCCC-------EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSE
T ss_pred             cccccc-----cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            986421     1122334568889999999998 89999999999999999999999999999999999999999 8899


Q ss_pred             EEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc
Q 001366          887 LASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL  966 (1092)
Q Consensus       887 laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs  966 (1092)
                      +++|+.|+.|++||+++++.+..+.+...|.+++|+|++. ++++|+.|+.|++||+++...  .....|...|.+++|+
T Consensus       198 ~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~i~~v~~s  274 (337)
T d1gxra_         198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDK--YQLHLHESCVLSLKFA  274 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCE--EEECCCSSCEEEEEEC
T ss_pred             cccccccccccccccccceeecccccccceEEEEEccccc-ccceecccccccccccccccc--ccccccccccceEEEC
Confidence            9999999999999999999999999999999999999985 899999999999999997753  4667899999999998


Q ss_pred             -CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeC
Q 001366          967 -DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus       967 -~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                       ++.+|++++.||.|++||+.+        +.++..+ .|...|++++|+|++++||+|+.|++|+|||+
T Consensus       275 ~~g~~l~s~s~Dg~i~iwd~~~--------~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         275 YCGKWFVSTGKDNLLNAWRTPY--------GASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT--------CCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCC--------CCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence             667999999999999999983        4455554 47889999999999999999999999999985

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=335.06  Aligned_cols=256  Identities=14%  Similarity=0.186  Sum_probs=183.1

Q ss_pred             HHHhhh--ccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTT--LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~--~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.  .||.|+||++...    ..++.+|.|++..... ........++..++...+|||++.+++.........  
T Consensus        20 Y~~i~~lG~G~fg~V~~~~~~----~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~--   93 (346)
T d1cm8a_          20 YRDLQPVGSGAYGAVCSAVDG----RTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLD--   93 (346)
T ss_dssp             EEEEEEC------CEEEEEET----TTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTT--
T ss_pred             EEEEEEEecCCCeEEEEEEEC----CCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccc--
Confidence            444443  4478999999852    2366677776532222 223345667888899999999998877655433221  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                         ....     .-.+|||| |.+|..+++..  .++...++.|++||+.||+|||++||+||||||+|||++.++.+|+
T Consensus        94 ---~~~~-----~~lv~e~~-~~~l~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl  162 (346)
T d1cm8a_          94 ---DFTD-----FYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKI  162 (346)
T ss_dssp             ---TCCC-----CEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEE
T ss_pred             ---ccce-----EEEEEecc-cccHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhccccccccc
Confidence               0001     11478998 77898888654  5788899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++....                                                                     
T Consensus       163 ~Dfg~a~~~~~---------------------------------------------------------------------  173 (346)
T d1cm8a_         163 LDFGLARQADS---------------------------------------------------------------------  173 (346)
T ss_dssp             CCCTTCEECCS---------------------------------------------------------------------
T ss_pred             ccccceeccCC---------------------------------------------------------------------
Confidence            99999876331                                                                     


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ..+..+||++|+|||++.+ ..++.++|||||||+||||+++ 
T Consensus       174 -------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~  216 (346)
T d1cm8a_         174 -------------------------------------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK  216 (346)
T ss_dssp             -------------------------------------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------ccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCc
Confidence                                                 0124578999999999987 4579999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhcc-----------------------------ccCCCCCCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          529 --FDSERALAAAMSDLR-----------------------------DRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~-----------------------------~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                        |.+............                             ...++..+...++.+.+||.+||++||.+|||+.
T Consensus       217 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~  296 (346)
T d1cm8a_         217 TLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAG  296 (346)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHH
Confidence              444333222211111                             0111223445678899999999999999999999


Q ss_pred             HHhhhhhhhhhhccc
Q 001366          578 EILQSEVTNEFQEVC  592 (1092)
Q Consensus       578 eiL~~~~~~~~~~~~  592 (1092)
                      |||+||||.+.....
T Consensus       297 eiL~Hp~f~~~~~~~  311 (346)
T d1cm8a_         297 EALAHPYFESLHDTE  311 (346)
T ss_dssp             HHHHSGGGTTTC---
T ss_pred             HHhcChhhCcCCCcc
Confidence            999999998765443

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=9.9e-36  Score=328.53  Aligned_cols=256  Identities=19%  Similarity=0.270  Sum_probs=185.7

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccC-chh-hHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSD-AALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      |.+.+.+  +|.|.||++...    ..++.+|.|+...... +.. .....++..++...+||||+.+++....+.... 
T Consensus         9 Y~i~~~lG~G~fg~Vy~a~~~----~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~-   83 (277)
T d1o6ya_           9 YELGEILGFGGMSEVHLARDL----RLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAG-   83 (277)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSS-
T ss_pred             eEEeEEEeeCCCeEEEEEEEC----CCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCC-
Confidence            4444444  478999999752    2356677776543222 222 233456778889999999999877655433211 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                          ..++       .+||||+|++|.+++...+ .+++.+++.|++||+.||+|||++||+||||||+||||+.++.++
T Consensus        84 ----~~~~-------lvmE~~~g~~L~~~~~~~~-~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~  151 (277)
T d1o6ya_          84 ----PLPY-------IVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVK  151 (277)
T ss_dssp             ----EEEE-------EEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEE
T ss_pred             ----ceEE-------EEEECCCCCEehhhhcccC-CCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccce
Confidence                0111       3899999999999997765 467779999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||.++.......                                                                 
T Consensus       152 l~d~~~~~~~~~~~~-----------------------------------------------------------------  166 (277)
T d1o6ya_         152 VMDFGIARAIADSGN-----------------------------------------------------------------  166 (277)
T ss_dssp             ECCCTTCEECC---------------------------------------------------------------------
T ss_pred             eehhhhhhhhccccc-----------------------------------------------------------------
Confidence            999998866431100                                                                 


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                         ........+||+.|||||++.+..++.++|||||||+||||++| 
T Consensus       167 -----------------------------------~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~  211 (277)
T d1o6ya_         167 -----------------------------------SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE  211 (277)
T ss_dssp             -----------------------------------------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------------------------cccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCC
Confidence                                               00112256899999999999999999999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhccccCCCCC--CCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhh
Q 001366          529 --FDSERALAAAMSDLRDRILPPS--FLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTN  586 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~  586 (1092)
                        |............++....++.  ....++.+.+||.+||++||.+||++.+.|.++|+.
T Consensus       212 ~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r  273 (277)
T d1o6ya_         212 PPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR  273 (277)
T ss_dssp             CSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHH
Confidence              6666666666666666555543  345678999999999999999999555555677764

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=323.41  Aligned_cols=243  Identities=14%  Similarity=0.107  Sum_probs=185.3

Q ss_pred             HHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCc
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGA  291 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (1092)
                      |.+.+.+  |+.|+||+|...+     +..+|.|+.....  .....-.++..++...+||||+.++.....+...+   
T Consensus         6 ~~~~~~iG~G~fg~Vy~~~~~~-----~~~vAvK~l~~~~--~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~---   75 (258)
T d1k2pa_           6 LTFLKELGTGQFGVVKYGKWRG-----QYDVAIKMIKEGS--MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIF---   75 (258)
T ss_dssp             CCCCCCCCEETTEEEEEEEETT-----TEEEEEEEEESSS--SCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEE---
T ss_pred             CEEeEEEecCCCeEEEEEEECC-----CCEEEEEEECcCc--CCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceE---
Confidence            3444554  5799999999744     4455665543222  22234567788899999999999877654333323   


Q ss_pred             cCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEe
Q 001366          292 RTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYI  371 (1092)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~  371 (1092)
                                   .+|||+++|+|.+++......++...++.|+.||++||+|||++||+||||||+|||++.++.+||+
T Consensus        76 -------------iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~  142 (258)
T d1k2pa_          76 -------------IITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVS  142 (258)
T ss_dssp             -------------EEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEEC
T ss_pred             -------------EEEEccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEEC
Confidence                         3899999999999987776778888999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccC
Q 001366          372 GPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSI  451 (1092)
Q Consensus       372 Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  451 (1092)
                      |||+++.+.+...                                                                   
T Consensus       143 DfG~a~~~~~~~~-------------------------------------------------------------------  155 (258)
T d1k2pa_         143 DFGLSRYVLDDEY-------------------------------------------------------------------  155 (258)
T ss_dssp             CCSSCCBCSSSSC-------------------------------------------------------------------
T ss_pred             cchhheeccCCCc-------------------------------------------------------------------
Confidence            9999976541100                                                                   


Q ss_pred             CCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-C--
Q 001366          452 PHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-R--  528 (1092)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~--  528 (1092)
                                                         .......||+.|+|||.+.+..++.++|||||||++|||++ +  
T Consensus       156 -----------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~  200 (258)
T d1k2pa_         156 -----------------------------------TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKM  200 (258)
T ss_dssp             -----------------------------------CCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             -----------------------------------eeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCC
Confidence                                               00113568999999999999999999999999999999997 3  


Q ss_pred             -CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          529 -FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       529 -f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                       |...... .....+.....++.....++++.+|+.+||.+||++|||+.+||+|
T Consensus       201 Pf~~~~~~-~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  254 (258)
T d1k2pa_         201 PYERFTNS-ETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN  254 (258)
T ss_dssp             TTTTSCHH-HHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCHH-HHHHHHHhCCCCCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence             4443332 2333333333333334557889999999999999999999999997

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=327.22  Aligned_cols=251  Identities=14%  Similarity=0.059  Sum_probs=185.5

Q ss_pred             hhHHHhhhc--cccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          212 SEFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       212 ~~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .+|.+.+.+  ||.|.||+|...+     ...+|.|++...  ......-.++..++...+||||+.++..... ...+ 
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~-----~~~vAiK~l~~~--~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~~~~-   87 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNG-----TTRVAIKTLKPG--TMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIY-   87 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETT-----TEEEEEEECCTT--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE-
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECC-----CCEEEEEEECcc--cCCHHHHHHHHHHHHhcccCCEeEEEEEEec-CCeE-
Confidence            344444444  4789999998754     334666665322  2223445677788899999999998776432 2122 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNA-RGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~-~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                     .+||||+||+|.+++.. ....+++.+++.|+.||+.||.|||++||+||||||+||||+.++.+
T Consensus        88 ---------------lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~  152 (285)
T d1fmka3          88 ---------------IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVC  152 (285)
T ss_dssp             ---------------EEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCE
T ss_pred             ---------------EEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcE
Confidence                           38999999999999854 33468898999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      ||+|||+++...+..                                                                 
T Consensus       153 kl~DfGla~~~~~~~-----------------------------------------------------------------  167 (285)
T d1fmka3         153 KVADFGLARLIEDNE-----------------------------------------------------------------  167 (285)
T ss_dssp             EECCCCTTC-----------------------------------------------------------------------
T ss_pred             EEcccchhhhccCCC-----------------------------------------------------------------
Confidence            999999997644100                                                                 


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR  528 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~  528 (1092)
                                                           ....+...||+.|+|||++.++.++.++|||||||+||||+++
T Consensus       168 -------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~  210 (285)
T d1fmka3         168 -------------------------------------YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTK  210 (285)
T ss_dssp             ---------------------------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             -------------------------------------ceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhC
Confidence                                                 0001145689999999999999999999999999999999984


Q ss_pred             ---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh--hhhhhhh
Q 001366          529 ---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ--SEVTNEF  588 (1092)
Q Consensus       529 ---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~--~~~~~~~  588 (1092)
                         +.........+..+.....++.....++++.+|+.+||+.||++||++.+|++  ++||...
T Consensus       211 ~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~  275 (285)
T d1fmka3         211 GRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  275 (285)
T ss_dssp             TCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             CCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCC
Confidence               22222223333333334444555566888999999999999999999999988  7888764

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=4.9e-35  Score=324.42  Aligned_cols=243  Identities=14%  Similarity=0.119  Sum_probs=179.2

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccC-chhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM-PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      .|+.|.||++...+     ++.+|.|+...... ........++..++...+||||+.+++....+...+          
T Consensus        12 ~G~fg~Vy~~~~~~-----~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~----------   76 (286)
T d1ob3a_          12 EGTYGVVYKAQNNY-----GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLV----------   76 (286)
T ss_dssp             EETTEEEEEEEETT-----SCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEE----------
T ss_pred             cCCCcEEEEEEeCC-----CCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCcee----------
Confidence            34789999997643     45667766533222 222345667888899999999999887776555444          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                            ++|+|+.|+.|..+.... ..+++.+++.|++||+.||+|||++|||||||||+||||+.++.+|++|||++..
T Consensus        77 ------i~~e~~~~~~~~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~  149 (286)
T d1ob3a_          77 ------LVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARA  149 (286)
T ss_dssp             ------EEEECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHH
T ss_pred             ------EEEEeehhhhHHHHHhhc-CCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEeccccccee
Confidence                  267788777666665444 5688889999999999999999999999999999999999999999999999876


Q ss_pred             ccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCc
Q 001366          379 TLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDT  458 (1092)
Q Consensus       379 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  458 (1092)
                      ...+.                                                                           
T Consensus       150 ~~~~~---------------------------------------------------------------------------  154 (286)
T d1ob3a_         150 FGIPV---------------------------------------------------------------------------  154 (286)
T ss_dssp             HCC-----------------------------------------------------------------------------
T ss_pred             cccCc---------------------------------------------------------------------------
Confidence            44110                                                                           


Q ss_pred             ccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcHHH
Q 001366          459 NEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSERA  534 (1092)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~~~  534 (1092)
                                                  .......||+.|+|||.+.+ ..++.++|||||||+||||++|   |.+...
T Consensus       155 ----------------------------~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~  206 (286)
T d1ob3a_         155 ----------------------------RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSE  206 (286)
T ss_dssp             -----------------------------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             ----------------------------cccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCH
Confidence                                        00114468899999999986 4579999999999999999986   554433


Q ss_pred             HHHHHHhccc--cC-------------------------CCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          535 LAAAMSDLRD--RI-------------------------LPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       535 ~~~~~~~~~~--~~-------------------------~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      ..........  ..                         .+..+...++.+.+|+.+||++||++|||++|+|+||||.+
T Consensus       207 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         207 ADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             HHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCc
Confidence            3332221110  00                         00113445788899999999999999999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-32  Score=299.31  Aligned_cols=287  Identities=16%  Similarity=0.175  Sum_probs=224.3

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|...|++|+|+|+|++||||+.|++|+|||+.+..      ........|...|++++|+|+ +. +++++.|+++
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~------~~~~~~~~h~~~v~~v~~~~~-g~-~~~~~~d~~v   78 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI------SNRVFPDVHATMITGIKTTSK-GD-LFTVSWDDHL   78 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------EEECSSCSCSSCEEEEEECTT-SC-EEEEETTTEE
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc------EEEEEcCCCCCcEEEEEeecc-ce-eecccceeeE
Confidence            467999999999999999999999999999999987521      111112358899999999997 54 5677889999


Q ss_pred             EEEECCCCc---eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEE
Q 001366          854 KLWDACTGQ---TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLA  930 (1092)
Q Consensus       854 ~IWD~~tg~---~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~la  930 (1092)
                      ++|+.....   .......|...+.+++|++ ++..+++++ ++.+++|+...   .........+.+++|+|++. +|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~-~l~  152 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGK---LTEVPISYNSSCVALSNDKQ-FVA  152 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTE---EEEEECSSCEEEEEECTTSC-EEE
T ss_pred             EEeccCCcccccccccccccccccccccccc-ccccccccc-ccccccccccc---cccccccccccccccccccc-ccc
Confidence            999976542   1122345778899999999 777666654 57899999542   33444566789999999985 899


Q ss_pred             EEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCe
Q 001366          931 FGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009 (1092)
Q Consensus       931 tgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V 1009 (1092)
                      +|+.|+.|++||+++..........|...|.+++|+ ++.+|++++.|+.|++||+.+...     ......+.+|...|
T Consensus       153 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         153 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-----LAHTNSWTFHTAKV  227 (299)
T ss_dssp             EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE-----ESCCCCCCCCSSCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccc
Confidence            999999999999987654334456799999999998 677899999999999999974321     12234567799999


Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEE
Q 001366         1010 NFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVL 1089 (1092)
Q Consensus      1010 ~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW 1089 (1092)
                      ++++|+|++.+|++|+.|+.|+|||+..+........           ...+...|.+++|. ++.+|+||+.||.|+||
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~~v~~~~~~-~~~~l~s~s~D~~i~iW  295 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-----------GAHAMSSVNSVIWL-NETTIVSAGQDSNIKFW  295 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-----------TSSTTSCEEEEEEE-ETTEEEEEETTSCEEEE
T ss_pred             ccccccccccceEEEcCCCEEEEEECCCCCcceEEEe-----------cCCCCCcEEEEEEC-CCCEEEEEeCCCEEEEE
Confidence            9999999999999999999999999887654332221           12344567777664 56799999999999999


Q ss_pred             Ec
Q 001366         1090 QM 1091 (1092)
Q Consensus      1090 ~l 1091 (1092)
                      +|
T Consensus       296 dl  297 (299)
T d1nr0a2         296 NV  297 (299)
T ss_dssp             EC
T ss_pred             ec
Confidence            97

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=325.27  Aligned_cols=251  Identities=12%  Similarity=0.037  Sum_probs=180.6

Q ss_pred             hHHHhhhc--cccceeeeCCCCCccccccccccccccccccC--chhhHhhhhhhhhhccCCCCCCCccccceecCCCCC
Q 001366          213 EFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTTM--PSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLD  288 (1092)
Q Consensus       213 ~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1092)
                      +|.+.+.+  ||+|.||+|.....- .....+|.|++.....  ......-.++..++...+||||+.++.....+. .+
T Consensus         9 d~~~~~~iG~G~fg~Vy~~~~~~~~-~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~-~~   86 (273)
T d1u46a_           9 DLRLLEKLGDGSFGVVRRGEWDAPS-GKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK   86 (273)
T ss_dssp             GEEEEEECC----CCCEEEEEECTT-SCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred             HeEEEEEEecCCCeEEEEEEEECCC-CcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecc-hh
Confidence            35555444  478999999752211 1122445555432222  222234467778899999999999876654221 11


Q ss_pred             CCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcE
Q 001366          289 LGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQV  368 (1092)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~v  368 (1092)
                                      .+||||++++|.+++......++..+++.++.||+.||.|||++||+||||||+||+|+.++.+
T Consensus        87 ----------------lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~v  150 (273)
T d1u46a_          87 ----------------MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLV  150 (273)
T ss_dssp             ----------------EEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEE
T ss_pred             ----------------eeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccce
Confidence                            2799999999999997766678888999999999999999999999999999999999999999


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||+++.+......                                                               
T Consensus       151 kl~DfGl~~~~~~~~~~---------------------------------------------------------------  167 (273)
T d1u46a_         151 KIGDFGLMRALPQNDDH---------------------------------------------------------------  167 (273)
T ss_dssp             EECCCTTCEECCC-CCE---------------------------------------------------------------
T ss_pred             eeccchhhhhcccCCCc---------------------------------------------------------------
Confidence            99999999875421100                                                               


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-  527 (1092)
                                                           ........|+.+|+|||++.+..++.++|||||||+||||++ 
T Consensus       168 -------------------------------------~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~  210 (273)
T d1u46a_         168 -------------------------------------YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTY  210 (273)
T ss_dssp             -------------------------------------EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTT
T ss_pred             -------------------------------------ceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhC
Confidence                                                 001113467889999999999999999999999999999997 


Q ss_pred             C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          528 R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       528 ~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      |   |.............+....++.....++.+.+|+.+||++||.+|||+.||++
T Consensus       211 G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~  267 (273)
T d1u46a_         211 GQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRD  267 (273)
T ss_dssp             SCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            4   54444444444444555555555667889999999999999999999999963

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-35  Score=331.98  Aligned_cols=257  Identities=16%  Similarity=0.211  Sum_probs=187.2

Q ss_pred             HHHhhh--ccccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTT--LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~--~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.  .||.|+||++..    ...++.+|.|+....... .......++..++...+|||++.++..........  
T Consensus        20 Y~i~~~LG~G~fg~Vy~a~~----~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~--   93 (348)
T d2gfsa1          20 YQNLSPVGSGAYGSVCAAFD----TKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE--   93 (348)
T ss_dssp             EEEEEECGGGTTSSEEEEEE----TTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTT--
T ss_pred             eEEEEEEecCCCeEEEEEEE----CCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccc--
Confidence            554444  447899999975    223677788776433322 23345667888899999999998766644322111  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                         .      .+...+|+|+.|++|.+++...  .++..+++.|++||+.||+|||++||+||||||+|||++.++.+|+
T Consensus        94 ---~------~~~~~i~~~~~gg~L~~~~~~~--~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl  162 (348)
T d2gfsa1          94 ---E------FNDVYLVTHLMGADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKI  162 (348)
T ss_dssp             ---T------CCCCEEEEECCSEEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEE
T ss_pred             ---c------CceEEEEEeecCCchhhhcccc--cccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccc
Confidence               0      0112378999999999999654  5888899999999999999999999999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||++.....                                                                     
T Consensus       163 ~dfg~a~~~~~---------------------------------------------------------------------  173 (348)
T d2gfsa1         163 LDFGLARHTDD---------------------------------------------------------------------  173 (348)
T ss_dssp             CCC----CCTG---------------------------------------------------------------------
T ss_pred             cccchhcccCc---------------------------------------------------------------------
Confidence            99998765331                                                                     


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcCC-
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ......||+.|+|||++.+. .++.++|||||||++|||++| 
T Consensus       174 -------------------------------------~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~  216 (348)
T d2gfsa1         174 -------------------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR  216 (348)
T ss_dssp             -------------------------------------GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCC
Confidence                                                 01145789999999997774 468999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhccccCCC-----------------------------CCCCCCChhHHHHHHhccccCCCCCCCHH
Q 001366          529 --FDSERALAAAMSDLRDRILP-----------------------------PSFLSENPKEAGFCLWQLHPEPLSRPTTR  577 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~~~~p-----------------------------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~  577 (1092)
                        |.+..........+.....+                             ..+...++.+.+||.+||++||.+|||+.
T Consensus       217 ~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~  296 (348)
T d2gfsa1         217 TLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA  296 (348)
T ss_dssp             CSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHH
Confidence              55544333322222111100                             11345678899999999999999999999


Q ss_pred             HHhhhhhhhhhhccch
Q 001366          578 EILQSEVTNEFQEVCA  593 (1092)
Q Consensus       578 eiL~~~~~~~~~~~~~  593 (1092)
                      |+|+||||.+......
T Consensus       297 elL~Hp~f~~~~~~~~  312 (348)
T d2gfsa1         297 QALAHAYFAQYHDPDD  312 (348)
T ss_dssp             HHHTSGGGTTTCCTTS
T ss_pred             HHhcCHhhCCCCCCcc
Confidence            9999999998765444

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-34  Score=323.12  Aligned_cols=251  Identities=16%  Similarity=0.086  Sum_probs=186.0

Q ss_pred             hHHHhhh--ccccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTT--LKGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~--~~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      +|.+.+.  .||.|+||+|...... ...+..+|.|+............-.++...+...+|||++.++.........+ 
T Consensus        14 ~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~-   92 (301)
T d1lufa_          14 NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMC-   92 (301)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCE-
T ss_pred             HcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCceE-
Confidence            3555555  4589999999752211 11134566665432222222333466778889999999998877655433333 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcC-----------------------CCCCHHHHHHHHHHHHHHHHHhh
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARG-----------------------HKGKRIECLYIFRQIVALVDYHH  346 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~-----------------------~~~~~~~~~~i~~qil~~l~~lH  346 (1092)
                                     .+|+|+++|+|.++|....                       ..++..+++.|++||+.||+|||
T Consensus        93 ---------------~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH  157 (301)
T d1lufa_          93 ---------------LLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS  157 (301)
T ss_dssp             ---------------EEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------EEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcc
Confidence                           3899999999999996532                       23677889999999999999999


Q ss_pred             hcCccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccc
Q 001366          347 TQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRW  426 (1092)
Q Consensus       347 s~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (1092)
                      ++|||||||||+||||+.++.+||+|||+++.+.+...                                          
T Consensus       158 ~~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~------------------------------------------  195 (301)
T d1lufa_         158 ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY------------------------------------------  195 (301)
T ss_dssp             HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGC------------------------------------------
T ss_pred             cCCeEeeEEcccceEECCCCcEEEccchhheeccCCcc------------------------------------------
Confidence            99999999999999999999999999999986541100                                          


Q ss_pred             cccccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC
Q 001366          427 WSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG  506 (1092)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~  506 (1092)
                                                                                 ....+...||+.|+|||.+.+
T Consensus       196 -----------------------------------------------------------~~~~~~~~~~~~y~aPE~~~~  216 (301)
T d1lufa_         196 -----------------------------------------------------------YKADGNDAIPIRWMPPESIFY  216 (301)
T ss_dssp             -----------------------------------------------------------BC----CCBCGGGCCHHHHHH
T ss_pred             -----------------------------------------------------------ccccCCCCcCcCcCCHHHHcc
Confidence                                                                       001124568899999999999


Q ss_pred             CCCCccccchhhhHHHHHHcCC----CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          507 GVCTTSSNIYSLGVLFFELFGR----FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       507 ~~~t~~sDIwSLGvll~ell~~----f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      ..||.++|||||||+||||+++    |... ...+.+..+.....++.....++.+.+|+.+||+++|++|||+.||++
T Consensus       217 ~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~-~~~e~~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~  294 (301)
T d1lufa_         217 NRYTTESDVWAYGVVLWEIFSYGLQPYYGM-AHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHR  294 (301)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTTCCTTTTS-CHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCChhhhhccchhhHHHHHccCCCCCCCC-CHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            9999999999999999999975    3333 333444445555556556667899999999999999999999999965

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-35  Score=327.36  Aligned_cols=266  Identities=12%  Similarity=0.073  Sum_probs=184.3

Q ss_pred             chhHHHhhhcc--ccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCC
Q 001366          211 FSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSL  287 (1092)
Q Consensus       211 f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (1092)
                      .+.|.+.+.++  +.|+||++...    ..++.+|.|+..... .........++..++...+|||++..+.........
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~----~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~   84 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHR----KTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASP   84 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEET----TTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----
T ss_pred             cCCEEEEEEEecCcCeEEEEEEEC----CCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccc
Confidence            45566666665  78999999862    235667777643222 222334456778888999999999887765543322


Q ss_pred             CCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCc
Q 001366          288 DLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQ  367 (1092)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~  367 (1092)
                      .. ....       ....+||||+++.+..+. .....+...+++.|++||+.||.|||++||+||||||+|||++.++.
T Consensus        85 ~~-~~~~-------~~~iv~e~~~~~~~~~~~-~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~  155 (318)
T d3blha1          85 YN-RCKG-------SIYLVFDFCEHDLAGLLS-NVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGV  155 (318)
T ss_dssp             --------------CEEEEEECCCEEHHHHHT-CTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSC
T ss_pred             cc-ccCc-------eEEEEEeccCCCccchhh-hcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCc
Confidence            20 0000       112479999888776554 44456778899999999999999999999999999999999999999


Q ss_pred             EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccc
Q 001366          368 VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDIN  447 (1092)
Q Consensus       368 vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (1092)
                      +|++|||+++........                                                              
T Consensus       156 ~kl~dfg~~~~~~~~~~~--------------------------------------------------------------  173 (318)
T d3blha1         156 LKLADFGLARAFSLAKNS--------------------------------------------------------------  173 (318)
T ss_dssp             EEECCCTTCEECCC------------------------------------------------------------------
T ss_pred             EEeeecceeeeccccccc--------------------------------------------------------------
Confidence            999999999765421000                                                              


Q ss_pred             cccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHc
Q 001366          448 EVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELF  526 (1092)
Q Consensus       448 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell  526 (1092)
                                                           ........+||++|+|||++.+. .|+.++|||||||++|||+
T Consensus       174 -------------------------------------~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~  216 (318)
T d3blha1         174 -------------------------------------QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMW  216 (318)
T ss_dssp             --------------------------------------CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------ccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHh
Confidence                                                 00011146899999999999874 6899999999999999999


Q ss_pred             CC---CCcHHHHHHH--HHhccccCCCCCCC----------------------------CCChhHHHHHHhccccCCCCC
Q 001366          527 GR---FDSERALAAA--MSDLRDRILPPSFL----------------------------SENPKEAGFCLWQLHPEPLSR  573 (1092)
Q Consensus       527 ~~---f~~~~~~~~~--~~~~~~~~~p~~~~----------------------------~~~~~~~~li~~lL~~dP~~R  573 (1092)
                      ++   |.+..+....  +........+....                            ..++.+.+||.+||.+||++|
T Consensus       217 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R  296 (318)
T d3blha1         217 TRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQR  296 (318)
T ss_dssp             HSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTS
T ss_pred             hCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHC
Confidence            86   5543332222  22222211111100                            125667899999999999999


Q ss_pred             CCHHHHhhhhhhhhh
Q 001366          574 PTTREILQSEVTNEF  588 (1092)
Q Consensus       574 psa~eiL~~~~~~~~  588 (1092)
                      ||++|+|+||||...
T Consensus       297 ~sa~elL~Hpff~~~  311 (318)
T d3blha1         297 IDSDDALNHDFFWSD  311 (318)
T ss_dssp             CCHHHHHHSGGGSSS
T ss_pred             cCHHHHHcChhhccC
Confidence            999999999999864

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=324.08  Aligned_cols=249  Identities=15%  Similarity=0.075  Sum_probs=183.8

Q ss_pred             hhccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecC-CCCCCCccCCCC
Q 001366          218 TTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSN-GSLDLGARTGVP  296 (1092)
Q Consensus       218 ~~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  296 (1092)
                      -+.||+|.||+|...+.- ..+..+|.|.............-.++..++...+||||+.++...... ...+        
T Consensus        35 iG~G~fg~Vyk~~~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~--------  105 (311)
T d1r0pa_          35 IGRGHFGCVYHGTLLDND-GKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL--------  105 (311)
T ss_dssp             EEEETTEEEEEEEECC-----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEE--------
T ss_pred             EeecCCeEEEEEEEECCC-CEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceE--------
Confidence            366789999999864311 001123444432223333445567888889999999999987664422 1122        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccc
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQ  376 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~  376 (1092)
                              .+||||+|++|.+++.......+..+++.++.||+.||.|+|++||+||||||+||||+.++.+||+|||++
T Consensus       106 --------lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~  177 (311)
T d1r0pa_         106 --------VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLA  177 (311)
T ss_dssp             --------EEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGG
T ss_pred             --------EEEEEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccch
Confidence                    389999999999999887777888889999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +........                                                                       
T Consensus       178 ~~~~~~~~~-----------------------------------------------------------------------  186 (311)
T d1r0pa_         178 RDMYDKEFD-----------------------------------------------------------------------  186 (311)
T ss_dssp             CCTTTTTCC-----------------------------------------------------------------------
T ss_pred             hhccccccc-----------------------------------------------------------------------
Confidence            875421100                                                                       


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                  .........||+.|+|||.+.+..++.++|||||||+||||+++   |....
T Consensus       187 ----------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~  238 (311)
T d1r0pa_         187 ----------------------------SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV  238 (311)
T ss_dssp             ----------------------------CTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC--
T ss_pred             ----------------------------cceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCC
Confidence                                        00011145789999999999999999999999999999999984   44333


Q ss_pred             HHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          534 ALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       534 ~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ........+.....++.....++++.+|+.+||+.||.+||++.||+++
T Consensus       239 ~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~  287 (311)
T d1r0pa_         239 NTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  287 (311)
T ss_dssp             ----CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            3333333333333344444567889999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-31  Score=292.31  Aligned_cols=287  Identities=22%  Similarity=0.333  Sum_probs=249.8

Q ss_pred             ccchhhhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEe
Q 001366          721 ADNDLLRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAG  798 (1092)
Q Consensus       721 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg  798 (1092)
                      ++...|++|.+.+.++.+    +|++  .++++.|+++++|++...+...     .+.+|...|.+++|+|++.++++++
T Consensus         8 ~~~~~L~GH~~~I~~l~~----sp~~~~l~s~s~Dg~i~iWd~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIF----HPVFSVMVSASEDATIKVWDYETGDFER-----TLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             SCSCEEECCSSCEEEEEE----CSSSSEEEEEESSSCEEEEETTTCCCCE-----EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CccEEEcCCCCCeEEEEE----cCCCCEEEEEeCCCeEEEEECCCCCEEE-----EEeCCCCcEEEEeeecccccccccc
Confidence            345678999988877654    4444  4578899999999998766544     3568999999999999999999999


Q ss_pred             CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEE
Q 001366          799 VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVD  878 (1092)
Q Consensus       799 ~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~  878 (1092)
                      .++.+.+|+....       ........|...+.++.|+++ +..+++++.|+.+++||+.+++.+..+.+|...+.+++
T Consensus        79 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (317)
T d1vyhc1          79 ADMTIKLWDFQGF-------ECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR  150 (317)
T ss_dssp             TTSCCCEEETTSS-------CEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             ccccccccccccc-------ccccccccccccceeeeccCC-CceEEeeccCcceeEeecccceeeeEEccCCCcceeee
Confidence            9999999997642       122334567889999999998 88999999999999999999999999999999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCC-------------------eEEEEEECCCeE
Q 001366          879 FSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSS-------------------HLLAFGSADYRT  938 (1092)
Q Consensus       879 fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~-------------------~~latgs~Dg~I  938 (1092)
                      |++ ++.+|++|+.|+.|++|++.++..+..+. +...+.+++|+|++.                   .++++|+.|+.|
T Consensus       151 ~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  229 (317)
T d1vyhc1         151 PNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  229 (317)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             ccc-CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEE
Confidence            999 88999999999999999999999988887 567799999988652                   368999999999


Q ss_pred             EEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecC
Q 001366          939 YCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTA 1017 (1092)
Q Consensus       939 ~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd 1017 (1092)
                      ++||+++++ ++..+.+|...|.+++|+ ++.+|++|+.||.|+|||+.        .+.++.++.+|...|++++|+|+
T Consensus       230 ~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~--------~~~~~~~~~~h~~~V~~~~~s~~  300 (317)
T d1vyhc1         230 KMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK--------NKRCMKTLNAHEHFVTSLDFHKT  300 (317)
T ss_dssp             EEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT--------TSCCCEEEECCSSCEEEEEECSS
T ss_pred             EEEECCCCc-EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECC--------CCcEEEEEcCCCCCEEEEEEcCC
Confidence            999999875 567888999999999998 66789999999999999998        45678899999999999999999


Q ss_pred             CCEEEEEecCCcEEEEe
Q 001366         1018 DGYIACGSESNEVYAYH 1034 (1092)
Q Consensus      1018 g~~lasgs~Dg~I~Iwd 1034 (1092)
                      +++|++|+.||+|+|||
T Consensus       301 ~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         301 APYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEeCCCeEEEeC
Confidence            99999999999999996

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-35  Score=326.77  Aligned_cols=249  Identities=15%  Similarity=0.084  Sum_probs=184.4

Q ss_pred             CchhHHHhhhcc--ccceeeeCCCCCccccccccccccccc--cccCchhhHhhhhhhhhhccC-CCCCCCccccceecC
Q 001366          210 GFSEFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFV--TTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSN  284 (1092)
Q Consensus       210 ~f~~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  284 (1092)
                      .|.+|.+.+.+|  +.|+||+|...+    .+...+++|+.  ..........-.++...+... +||||+.++.....+
T Consensus         8 ~~~~~~~~~~iG~G~fg~Vy~~~~~~----~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~   83 (309)
T d1fvra_           8 DWNDIKFQDVIGEGNFGQVLKARIKK----DGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR   83 (309)
T ss_dssp             CGGGCEEEEEEECGGGCEEEEEEEEE----TTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET
T ss_pred             CHHHcEEEEEEeeCCCcEEEEEEECC----CCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecC
Confidence            455666655554  789999998732    12222233332  111122223345667777776 799999988876655


Q ss_pred             CCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhc---------------CCCCCHHHHHHHHHHHHHHHHHhhhcC
Q 001366          285 GSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNAR---------------GHKGKRIECLYIFRQIVALVDYHHTQG  349 (1092)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~---------------~~~~~~~~~~~i~~qil~~l~~lHs~g  349 (1092)
                      ...+                .+||||+||+|.++|...               +..++..+++++++||+.||.|+|++|
T Consensus        84 ~~~~----------------iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~  147 (309)
T d1fvra_          84 GYLY----------------LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ  147 (309)
T ss_dssp             TEEE----------------EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CeeE----------------EEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCC
Confidence            4444                389999999999999643               356888899999999999999999999


Q ss_pred             ccccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccc
Q 001366          350 VTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSL  429 (1092)
Q Consensus       350 IvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (1092)
                      |+||||||+|||++..+.+||+|||+++......                                              
T Consensus       148 iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~----------------------------------------------  181 (309)
T d1fvra_         148 FIHRDLAARNILVGENYVAKIADFGLSRGQEVYV----------------------------------------------  181 (309)
T ss_dssp             EECSCCSGGGEEECGGGCEEECCTTCEESSCEEC----------------------------------------------
T ss_pred             ccccccccceEEEcCCCceEEccccccccccccc----------------------------------------------
Confidence            9999999999999999999999999987643100                                              


Q ss_pred             ccCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCC
Q 001366          430 FPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVC  509 (1092)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~  509 (1092)
                                                                                ......||..|+|||.+.+..+
T Consensus       182 ----------------------------------------------------------~~~~~~gt~~y~aPE~l~~~~~  203 (309)
T d1fvra_         182 ----------------------------------------------------------KKTMGRLPVRWMAIESLNYSVY  203 (309)
T ss_dssp             ----------------------------------------------------------CC----CCTTTCCHHHHHHCEE
T ss_pred             ----------------------------------------------------------cccceecCCcccchHHhccCCC
Confidence                                                                      0013468899999999999999


Q ss_pred             CccccchhhhHHHHHHcCC---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          510 TTSSNIYSLGVLFFELFGR---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       510 t~~sDIwSLGvll~ell~~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      +.++|||||||+||||+++   +.........+..+.....|+.....++++.+||.+||++||++|||+.||+++
T Consensus       204 ~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  279 (309)
T d1fvra_         204 TTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  279 (309)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            9999999999999999984   222233444445555544555555678999999999999999999999999987

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=320.88  Aligned_cols=252  Identities=16%  Similarity=0.160  Sum_probs=179.5

Q ss_pred             hhHHHhhhc--cccceeeeCCCCCcccc---ccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCC
Q 001366          212 SEFFVKTTL--KGKGIVCRGPPLNAFKE---RRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNG  285 (1092)
Q Consensus       212 ~~~~~~~~~--~g~Gvv~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  285 (1092)
                      .+|.+.+.+  ||+|.||+|.....-..   ....+|.|+..............++...+... +||||+.++.....+.
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~   92 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   92 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCC
Confidence            345555544  57899999874221110   11234555443222222334444455555555 8999999887765443


Q ss_pred             CCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------------CCCCHHHHHHHHHHHHHHHHHhhhcCc
Q 001366          286 SLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------------HKGKRIECLYIFRQIVALVDYHHTQGV  350 (1092)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------------~~~~~~~~~~i~~qil~~l~~lHs~gI  350 (1092)
                      ..+                .+||||+||+|.++|....               ..++..+++.+++||+.||+|||++||
T Consensus        93 ~~~----------------~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~i  156 (299)
T d1fgka_          93 PLY----------------VIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKC  156 (299)
T ss_dssp             SCE----------------EEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEE----------------EEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCE
Confidence            333                2799999999999997653               347888999999999999999999999


Q ss_pred             cccCCCCCCeEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccc
Q 001366          351 TFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLF  430 (1092)
Q Consensus       351 vHrDLKP~Nill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (1092)
                      |||||||+|||++.++.+||+|||+++.......                                              
T Consensus       157 vHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~----------------------------------------------  190 (299)
T d1fgka_         157 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDY----------------------------------------------  190 (299)
T ss_dssp             CCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCT----------------------------------------------
T ss_pred             EeeeecccceeecCCCCeEeccchhhcccccccc----------------------------------------------
Confidence            9999999999999999999999999987542110                                              


Q ss_pred             cCccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCC
Q 001366          431 PSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCT  510 (1092)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t  510 (1092)
                                                                             ........||+.|+|||.+.++.|+
T Consensus       191 -------------------------------------------------------~~~~~~~~~~~~y~aPE~l~~~~y~  215 (299)
T d1fgka_         191 -------------------------------------------------------YKKTTNGRLPVKWMAPEALFDRIYT  215 (299)
T ss_dssp             -------------------------------------------------------TCCCTTSCCGGGGSCHHHHHHCCCC
T ss_pred             -------------------------------------------------------ccccccCCCChhhhhhhHhcCCCCC
Confidence                                                                   0001145788999999999999999


Q ss_pred             ccccchhhhHHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          511 TSSNIYSLGVLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       511 ~~sDIwSLGvll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      .++|||||||+||||++ +   |.... .......+.....++.....++.+.+||.+||++||++|||+.||++
T Consensus       216 ~k~DiwS~Gvvl~ell~~g~~p~~~~~-~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~  289 (299)
T d1fgka_         216 HQSDVWSFGVLLWEIFTLGGSPYPGVP-VEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE  289 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSTTCC-HHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             chhhhHHhHHHHHHhccCCCCCCCCCC-HHHHHHHHHcCCCCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHH
Confidence            99999999999999997 3   33222 23333444444444444556889999999999999999999999988

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-34  Score=317.73  Aligned_cols=244  Identities=16%  Similarity=0.157  Sum_probs=182.4

Q ss_pred             cccceeeeCCCCCcccccccccccccccccc-CchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          221 KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT-MPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       221 ~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      ||.|+||++..    ...+..+|.|+..... .........++..++...+|||++.++.........+           
T Consensus        13 G~fg~V~~~~~----~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~-----------   77 (292)
T d1unla_          13 GTYGTVFKAKN----RETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLT-----------   77 (292)
T ss_dssp             CSSSEEEEEEE----TTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE-----------
T ss_pred             CcCeEEEEEEE----CCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeecccccccccee-----------
Confidence            47899999986    2235667777753332 2333455668888899999999998877665444333           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKET  379 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~  379 (1092)
                           .+|+++.|++|..++...+ .++..+++.+++|++.||+|||++||+||||||+||||+..+.+|++|||.++..
T Consensus        78 -----iv~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~  151 (292)
T d1unla_          78 -----LVFEFCDQDLKKYFDSCNG-DLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAF  151 (292)
T ss_dssp             -----EEEECCSEEHHHHHHHTTT-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             -----EEeeecccccccccccccc-ccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcc
Confidence                 3799999999988876554 5677799999999999999999999999999999999999999999999998775


Q ss_pred             cccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCCcc
Q 001366          380 LESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTN  459 (1092)
Q Consensus       380 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  459 (1092)
                      ..+..                                                                           
T Consensus       152 ~~~~~---------------------------------------------------------------------------  156 (292)
T d1unla_         152 GIPVR---------------------------------------------------------------------------  156 (292)
T ss_dssp             CSCCS---------------------------------------------------------------------------
T ss_pred             cCCCc---------------------------------------------------------------------------
Confidence            41110                                                                           


Q ss_pred             cccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCC-CCccccchhhhHHHHHHcCC----CCcHHH
Q 001366          460 EHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGV-CTTSSNIYSLGVLFFELFGR----FDSERA  534 (1092)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~-~t~~sDIwSLGvll~ell~~----f~~~~~  534 (1092)
                                                  ......++++|+|||++.+.. ++.++|||||||++|||+++    |.+...
T Consensus       157 ----------------------------~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~  208 (292)
T d1unla_         157 ----------------------------CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV  208 (292)
T ss_dssp             ----------------------------CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSH
T ss_pred             ----------------------------cceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCH
Confidence                                        001345678899999998755 69999999999999999985    222222


Q ss_pred             H--HHHHHhcccc-------------------------CCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhh
Q 001366          535 L--AAAMSDLRDR-------------------------ILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNE  587 (1092)
Q Consensus       535 ~--~~~~~~~~~~-------------------------~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~  587 (1092)
                      .  ...+......                         .........++.+.+|+.+||++||.+||||+|+|+||||++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~Hp~f~~  288 (292)
T d1unla_         209 DDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSD  288 (292)
T ss_dssp             HHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGSS
T ss_pred             HHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcChhhcC
Confidence            2  1111111111                         011123455678899999999999999999999999999986


Q ss_pred             h
Q 001366          588 F  588 (1092)
Q Consensus       588 ~  588 (1092)
                      .
T Consensus       289 ~  289 (292)
T d1unla_         289 F  289 (292)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=327.77  Aligned_cols=249  Identities=16%  Similarity=0.154  Sum_probs=177.5

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .||.|+||++...    ..++.+|.|+.....     ....++..++...+|||++.+++.........     .-... 
T Consensus        30 ~G~fg~Vy~a~~~----~~~~~vAiK~i~~~~-----~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~-----~~~~~-   94 (350)
T d1q5ka_          30 NGSFGVVYQAKLC----DSGELVAIKKVLQDK-----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKK-----DEVYL-   94 (350)
T ss_dssp             EETTEEEEEEEET----TTCCEEEEEEEECCS-----SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CC-----SCCEE-
T ss_pred             eCcCeEEEEEEEC----CCCCEEEEEEECccc-----hHHHHHHHHHHhcCCCCCCcEEEEEEecCccC-----CceEE-
Confidence            4579999999873    235667776653221     12235667788889999998766643221110     00011 


Q ss_pred             ccCCCcccccCCCCCHHHHHh--hcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC-cEEEeccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLN--ARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN-QVKYIGPIIQ  376 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~--~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~-~vkl~Dfg~~  376 (1092)
                          ..+||||+|+.+..+..  .....+++.+++.|++||+.||+|||++||+||||||+||||+.++ .+||+|||++
T Consensus        95 ----~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a  170 (350)
T d1q5ka_          95 ----NLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSA  170 (350)
T ss_dssp             ----EEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTC
T ss_pred             ----EEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccch
Confidence                13799998775554432  3445688889999999999999999999999999999999999775 8999999998


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.....                                                                          
T Consensus       171 ~~~~~~--------------------------------------------------------------------------  176 (350)
T d1q5ka_         171 KQLVRG--------------------------------------------------------------------------  176 (350)
T ss_dssp             EECCTT--------------------------------------------------------------------------
T ss_pred             hhccCC--------------------------------------------------------------------------
Confidence            764310                                                                          


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccC-CCCCccccchhhhHHHHHHcCC---CCcH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSG-GVCTTSSNIYSLGVLFFELFGR---FDSE  532 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~-~~~t~~sDIwSLGvll~ell~~---f~~~  532 (1092)
                                                    ......+||+.|+|||++.+ ..|+.++|||||||++|||+++   |...
T Consensus       177 ------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~  226 (350)
T d1q5ka_         177 ------------------------------EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD  226 (350)
T ss_dssp             ------------------------------SCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred             ------------------------------cccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCC
Confidence                                          00114578999999999876 5689999999999999999986   5544


Q ss_pred             HHHHHHHHhcc------------------ccCCCC---------CCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhh
Q 001366          533 RALAAAMSDLR------------------DRILPP---------SFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVT  585 (1092)
Q Consensus       533 ~~~~~~~~~~~------------------~~~~p~---------~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~  585 (1092)
                      .........++                  ...++.         .....++.+.+||.+||.+||.+|||+.|+|+||||
T Consensus       227 ~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f  306 (350)
T d1q5ka_         227 SGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFF  306 (350)
T ss_dssp             SHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGG
T ss_pred             CHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhh
Confidence            43333322211                  001110         123457889999999999999999999999999999


Q ss_pred             hhhhcc
Q 001366          586 NEFQEV  591 (1092)
Q Consensus       586 ~~~~~~  591 (1092)
                      .+..+.
T Consensus       307 ~~~~~~  312 (350)
T d1q5ka_         307 DELRDP  312 (350)
T ss_dssp             GGGGCT
T ss_pred             ccccCC
Confidence            887553

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.2e-31  Score=294.82  Aligned_cols=272  Identities=15%  Similarity=0.169  Sum_probs=222.7

Q ss_pred             CCCC-cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccc
Q 001366          743 NPTD-RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYP  821 (1092)
Q Consensus       743 ~~~~-~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~  821 (1092)
                      +|++ .+....++.+.+|+..+.....     .+.+|...|++++|+|+|++||+|+.|++|+|||+....     ....
T Consensus        26 ~~~g~~l~~~~~~~v~i~~~~~~~~~~-----~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~-----~~~~   95 (311)
T d1nr0a1          26 TPAGDKIQYCNGTSVYTVPVGSLTDTE-----IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-----HILK   95 (311)
T ss_dssp             CTTSSEEEEEETTEEEEEETTCSSCCE-----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT-----CCEE
T ss_pred             cCCCCEEEEEeCCEEEEEECCCCceeE-----EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc-----cccc
Confidence            3443 3333456788999987664443     356899999999999999999999999999999987521     1112


Q ss_pred             eeeecCCCCeEEEEEecCCCCEEEEEEC--CCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEE
Q 001366          822 AVEMSNRSKLSCVCWNNYIKNYLASADY--DGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW  899 (1092)
Q Consensus       822 ~~~~~h~~~V~~v~~sp~~~~~LaSgs~--DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iW  899 (1092)
                      .....|..+|.+++|+|+ +.+|++++.  +..++||++.+++....+.+|...|++++|+|.....|++|+.|+.|++|
T Consensus        96 ~~~~~~~~~v~~v~~s~d-~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1          96 TTIPVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             EEEECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred             cccccccCcccccccccc-ccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccc
Confidence            234568899999999998 888888875  46699999999999999999999999999999444568999999999999


Q ss_pred             ecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEE-------ecCCCCCeEEEEEc-CCCE
Q 001366          900 NINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV-------LAGHEKAVSYVKFL-DSGT  970 (1092)
Q Consensus       900 Dl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~-------l~~H~~~V~~v~fs-~~~~  970 (1092)
                      |+++++....+. +...|+++.|+|++. ++++|+.|+.|++||+++... ...       ..+|...|++++|+ ++.+
T Consensus       175 d~~~~~~~~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~s~~~~~  252 (311)
T d1nr0a1         175 EGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTK  252 (311)
T ss_dssp             ETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccCcccc-ccccccccccccccccccccc-cccccccccccccccccccccccCCCCCE
Confidence            999999888887 577899999999985 899999999999999987653 222       34689999999998 6789


Q ss_pred             EEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCC-CeEEEEEecCCCEEEEEecCCcEEEEeC
Q 001366          971 LVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTN-EKNFVGLSTADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus       971 L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~-~V~~v~~spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                      |++|+.||+|+|||++        ++.++.++..|.. ....+++.+++.+|++++.||.|++||.
T Consensus       253 l~tgs~Dg~v~iwd~~--------t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         253 IASASADKTIKIWNVA--------TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             EEEEETTSEEEEEETT--------TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             EEEEeCCCeEEEEECC--------CCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            9999999999999998        4667888876644 2334556666778999999999999985

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-34  Score=312.95  Aligned_cols=232  Identities=16%  Similarity=0.106  Sum_probs=172.9

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCC-CCCCCccCCCCCc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNG-SLDLGARTGVPAS  298 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  298 (1092)
                      .||+|+||+|...      +..+|.|+....   .....-.++..++...+||||+.++.....+. ..+          
T Consensus        17 ~G~fg~Vy~~~~~------~~~vAvK~i~~~---~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~----------   77 (262)
T d1byga_          17 KGEFGDVMLGDYR------GNKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY----------   77 (262)
T ss_dssp             ECSSCEEEEEEET------TEEEEEEECCCC---C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCE----------
T ss_pred             cCCCeEEEEEEEC------CeEEEEEEECcH---HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEE----------
Confidence            3578999999874      344666555221   22233456778888999999999877644221 112          


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEecccccc
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARG-HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQK  377 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~-~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~  377 (1092)
                            .+||||+||+|.++|...+ ..+++..++.|+.||+.||.|||+++|+||||||+|||++.++.+|++|||+++
T Consensus        78 ------lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~  151 (262)
T d1byga_          78 ------IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTK  151 (262)
T ss_dssp             ------EEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred             ------EEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccce
Confidence                  3899999999999996543 357888999999999999999999999999999999999999999999999887


Q ss_pred             cccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCCC
Q 001366          378 ETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHND  457 (1092)
Q Consensus       378 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  457 (1092)
                      .....                                                                           
T Consensus       152 ~~~~~---------------------------------------------------------------------------  156 (262)
T d1byga_         152 EASST---------------------------------------------------------------------------  156 (262)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCCC---------------------------------------------------------------------------
Confidence            64310                                                                           


Q ss_pred             cccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcC-CC--CcHHH
Q 001366          458 TNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFG-RF--DSERA  534 (1092)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~-~f--~~~~~  534 (1092)
                                                     .....+|..|+|||.+.+..++.++|||||||++|||++ +.  .....
T Consensus       157 -------------------------------~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~  205 (262)
T d1byga_         157 -------------------------------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  205 (262)
T ss_dssp             ------------------------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC
T ss_pred             -------------------------------CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCC
Confidence                                           003356888999999999999999999999999999997 31  11222


Q ss_pred             HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          535 LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       535 ~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      .......+.....|+.....++.+.+|+.+||++||.+|||+.+|+++
T Consensus       206 ~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~  253 (262)
T d1byga_         206 LKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ  253 (262)
T ss_dssp             GGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence            223333444444555555668999999999999999999999999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-30  Score=290.17  Aligned_cols=324  Identities=14%  Similarity=0.193  Sum_probs=244.1

Q ss_pred             ccchhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC
Q 001366          721 ADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS  800 (1092)
Q Consensus       721 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D  800 (1092)
                      |...+|++|.+.+....   ..+++-.++++.|+++++|+..+.+....     +.+|...|++++|+|+ .+|++|+.|
T Consensus         3 p~~~tL~GH~~~vitc~---~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~-----l~~H~~~V~~l~~s~~-~~l~s~s~D   73 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCL---QFEDNYVITGADDKMIRVYDSINKKFLLQ-----LSGHDGGVWALKYAHG-GILVSGSTD   73 (355)
T ss_dssp             CEEEEEECCSSSCEEEE---EEETTEEEEEETTTEEEEEETTTTEEEEE-----EECCSSCEEEEEEETT-TEEEEEETT
T ss_pred             CCcEEECCcCCCcEEEE---EECCCEEEEEeCCCeEEEEECCCCcEEEE-----EECCCCCEEEEEEcCC-CEEEEEecc
Confidence            44567899987653211   12344456889999999999988766544     5589999999999985 589999999


Q ss_pred             CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEE---------------
Q 001366          801 KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVS---------------  865 (1092)
Q Consensus       801 ~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~---------------  865 (1092)
                      ++|++|++....     .........+...+..+.+.++ +..+++++.|++|++||+.+...+.               
T Consensus        74 ~~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  147 (355)
T d1nexb2          74 RTVRVWDIKKGC-----CTHVFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP  147 (355)
T ss_dssp             CCEEEEETTTTE-----EEEEECCCSSCEEEEEEEEETT-EEEEEEEETTSEEEEEECCC-----------CCCEEESCT
T ss_pred             cccccccccccc-----cccccccccccccccccccccc-cceeeeecCCCcEEEEEccCCceeccccccceeccceecc
Confidence            999999987521     0111111122333455667776 7899999999999999997754322               


Q ss_pred             --------EeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCC
Q 001366          866 --------HYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADY  936 (1092)
Q Consensus       866 --------~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg  936 (1092)
                              ....|...+...  .+ ++.++++++.|+.|++||+++++.+.... +...+.++.|+|++. ++++++.|+
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~--~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~  223 (355)
T d1nexb2         148 EENPYFVGVLRGHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDT  223 (355)
T ss_dssp             TTCTTEEEEEECCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTS
T ss_pred             ccccceeeeeeecccccccc--cc-ccceeeeecccceeeeeecccccceeeeeccccccccccccccce-eeecccccc
Confidence                    222344444433  33 56899999999999999999999888777 567899999999985 899999999


Q ss_pred             eEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEE-EEe
Q 001366          937 RTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFV-GLS 1015 (1092)
Q Consensus       937 ~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v-~~s 1015 (1092)
                      .|++||++++. .+..+.+|...|.+++|+ +++|++|+.||+|++||+++.          ...+..|...+..+ .++
T Consensus       224 ~i~i~d~~~~~-~~~~~~~h~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~~  291 (355)
T d1nexb2         224 TIRIWDLENGE-LMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDY----------SRKFSYHHTNLSAITTFY  291 (355)
T ss_dssp             CEEEEETTTCC-EEEEECCCSSCCCEEEEC-SSEEEEECTTSEEEEEETTTC----------CEEEEEECTTCCCCCEEE
T ss_pred             eEEeeeccccc-cccccccccccccccccc-cceeeeeeccccccccccccc----------ceecccccCCceEEEEEc
Confidence            99999999875 467889999999999996 679999999999999999832          23455566666665 567


Q ss_pred             cCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1016 TADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1016 pdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      +++.+|++|+ |+.|+|||+.+++.+...             ..+|...|++|+|+|+ .++++++.||.++||-
T Consensus       292 ~~~~~l~~g~-d~~i~vwd~~tg~~~~~~-------------~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         292 VSDNILVSGS-ENQFNIYNLRSGKLVHAN-------------ILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             ECSSEEEEEE-TTEEEEEETTTCCBCCSC-------------TTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             CCCCEEEEEe-CCEEEEEECCCCCEEEEE-------------ecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            7777777665 899999999988876432             2467889999999997 5788899999866654

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-34  Score=319.49  Aligned_cols=246  Identities=13%  Similarity=0.096  Sum_probs=180.7

Q ss_pred             hccccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCCCccCCCC
Q 001366          219 TLKGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDLGARTGVP  296 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (1092)
                      +.||+|+||+|...... ...+..+|+|+..............++..++... +||||+.++.....+...+        
T Consensus        32 G~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~--------  103 (311)
T d1t46a_          32 GAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTL--------  103 (311)
T ss_dssp             EECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE--------
T ss_pred             eecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEE--------
Confidence            45589999999642111 1124556666654333333433444566666666 6999998877765433333        


Q ss_pred             CccccCCCcccccCCCCCHHHHHhhcC-----------------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCC
Q 001366          297 ASCWIGGLRQGSSDHGVNLREWLNARG-----------------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSS  359 (1092)
Q Consensus       297 ~~~~~~~~~~~~~~~GgsL~~~l~~~~-----------------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~N  359 (1092)
                              .+||||+||+|.++|....                 ..++..+++.|+.||+.||.|||++||+||||||+|
T Consensus       104 --------lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~N  175 (311)
T d1t46a_         104 --------VITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARN  175 (311)
T ss_dssp             --------EEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             --------EEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccc
Confidence                    3899999999999996543                 257888999999999999999999999999999999


Q ss_pred             eEEccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccc
Q 001366          360 FKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIE  439 (1092)
Q Consensus       360 ill~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (1092)
                      |+++..+.+|++|||+++...+...                                                       
T Consensus       176 Il~~~~~~~ki~DfG~~~~~~~~~~-------------------------------------------------------  200 (311)
T d1t46a_         176 ILLTHGRITKICDFGLARDIKNDSN-------------------------------------------------------  200 (311)
T ss_dssp             EEEETTTEEEECCCGGGSCTTSCTT-------------------------------------------------------
T ss_pred             ccccccCcccccccchheeccCCCc-------------------------------------------------------
Confidence            9999999999999999886441100                                                       


Q ss_pred             ccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhh
Q 001366          440 TANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLG  519 (1092)
Q Consensus       440 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLG  519 (1092)
                                                                    ....+...||+.|+|||.+.+..++.++||||||
T Consensus       201 ----------------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G  234 (311)
T d1t46a_         201 ----------------------------------------------YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYG  234 (311)
T ss_dssp             ----------------------------------------------SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHH
T ss_pred             ----------------------------------------------ceEeeecccChHHcCHHHhcCCCCCCcccccchH
Confidence                                                          0011245789999999999999999999999999


Q ss_pred             HHHHHHcC-C---CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          520 VLFFELFG-R---FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       520 vll~ell~-~---f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      |+||||++ +   |............+.....++.....++.+.+||.+||++||.+|||+.+|++
T Consensus       235 ~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         235 IFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             HHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            99999998 3   33322222233333333333333445788999999999999999999999987

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-34  Score=323.12  Aligned_cols=261  Identities=18%  Similarity=0.178  Sum_probs=185.6

Q ss_pred             cCCchhHHHhhhc--cccceeeeCCCCCcccccccccccccccccc---CchhhHhhhhhhhhhccCCC-CCCCccccce
Q 001366          208 KSGFSEFFVKTTL--KGKGIVCRGPPLNAFKERRGMIDTKAFVTTT---MPSDAALKAAGAMMVASNAS-PKPVGVGTAV  281 (1092)
Q Consensus       208 ~~~f~~~~~~~~~--~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  281 (1092)
                      +.+...|.+.+.+  ||.|.||++..... +..++.+|.|++--..   .........++...+...+| |||+.++...
T Consensus        20 ~~~l~~y~~~~~IG~G~fg~Vy~~~~~~~-~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~   98 (322)
T d1vzoa_          20 KVGIENFELLKVLGTGAYGKVFLVRKISG-HDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAF   98 (322)
T ss_dssp             CCCGGGEEEEEEEEETTTEEEEEEEECSS-TTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEE
T ss_pred             ccchhceEEEEEEecCCCeEEEEEEECcc-CCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeee
Confidence            3455667775554  47899999854110 2235566776542111   11112334455666777766 7998877665


Q ss_pred             ecCCCCCCCccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeE
Q 001366          282 VSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFK  361 (1092)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nil  361 (1092)
                      ..+...+                .+|||+.|++|.+++...+. +.+..++.+++||+.||+|||++||+||||||+|||
T Consensus        99 ~~~~~~~----------------~v~e~~~~~~L~~~i~~~~~-~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nil  161 (322)
T d1vzoa_          99 QTETKLH----------------LILDYINGGELFTHLSQRER-FTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENIL  161 (322)
T ss_dssp             EETTEEE----------------EEECCCCSCBHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE
T ss_pred             ccCCcee----------------eeeecccccHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHhhcCCEEeccCCcccee
Confidence            5444333                27999999999999987765 456689999999999999999999999999999999


Q ss_pred             EccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          362 LLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       362 l~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      |+.++.+||+|||+++.+....                                                          
T Consensus       162 l~~~~~vkL~DFG~a~~~~~~~----------------------------------------------------------  183 (322)
T d1vzoa_         162 LDSNGHVVLTDFGLSKEFVADE----------------------------------------------------------  183 (322)
T ss_dssp             ECTTSCEEESCSSEEEECCGGG----------------------------------------------------------
T ss_pred             ecCCCCEEEeeccchhhhcccc----------------------------------------------------------
Confidence            9999999999999997754110                                                          


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC--CCCccccchhhh
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG--VCTTSSNIYSLG  519 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~--~~t~~sDIwSLG  519 (1092)
                                                                  ........||+.|+|||++.+.  .++.++||||||
T Consensus       184 --------------------------------------------~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG  219 (322)
T d1vzoa_         184 --------------------------------------------TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLG  219 (322)
T ss_dssp             --------------------------------------------GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHH
T ss_pred             --------------------------------------------cccccccccccccchhHHhhcCCcCCCchhhhHHHH
Confidence                                                        0001145789999999999764  468899999999


Q ss_pred             HHHHHHcCC---CCcHHH---HHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCC-----CHHHHhhhhhhhhh
Q 001366          520 VLFFELFGR---FDSERA---LAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRP-----TTREILQSEVTNEF  588 (1092)
Q Consensus       520 vll~ell~~---f~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rp-----sa~eiL~~~~~~~~  588 (1092)
                      |+||||++|   |.....   ....... .....++.....++++.+|+.+||++||.+||     |++|+|+||||.+.
T Consensus       220 ~iLyelltG~~PF~~~~~~~~~~~i~~~-~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i  298 (322)
T d1vzoa_         220 VLMYELLTGASPFTVDGEKNSQAEISRR-ILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKI  298 (322)
T ss_dssp             HHHHHHHHSSCTTSCTTSCCCHHHHHHH-HHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTC
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHh-cccCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcCC
Confidence            999999986   543321   1111111 11222333445689999999999999999999     58999999999764


Q ss_pred             h
Q 001366          589 Q  589 (1092)
Q Consensus       589 ~  589 (1092)
                      .
T Consensus       299 ~  299 (322)
T d1vzoa_         299 N  299 (322)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=8.4e-34  Score=320.72  Aligned_cols=246  Identities=14%  Similarity=0.166  Sum_probs=175.4

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccC-CCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASN-ASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.++  +.|+||+|..    ...++.+|.|+...    .......++..++... .||||+.+++......... 
T Consensus        36 ~y~i~~~LG~G~fg~V~~a~~----~~~~~~vAiK~i~~----~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~-  106 (328)
T d3bqca1          36 DYQLVRKLGRGKYSEVFEAIN----ITNNEKVVVKILKP----VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRT-  106 (328)
T ss_dssp             GEEEEEEEEECSSEEEEEEEE----TTTTEEEEEEEECS----SCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCS-
T ss_pred             CeEEEEEEecCcCeEEEEEEE----CCCCCEEEEEEECH----HHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCc-
Confidence            466655554  6899999975    22366677776522    1223344566666665 5999998776644221111 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCC-cE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSN-QV  368 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~-~v  368 (1092)
                            .+       .+||||.|++|..+.    ..+++.+++.|++||+.||+|||++||+||||||+||||+.++ .+
T Consensus       107 ------~~-------~v~e~~~~~~L~~~~----~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~v  169 (328)
T d3bqca1         107 ------PA-------LVFEHVNNTDFKQLY----QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKL  169 (328)
T ss_dssp             ------EE-------EEEECCCSCBGGGTT----TSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEE
T ss_pred             ------ee-------EEEeecCCCcHHHHh----cCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCee
Confidence                  01       279999999998764    3578889999999999999999999999999999999998655 69


Q ss_pred             EEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccc
Q 001366          369 KYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINE  448 (1092)
Q Consensus       369 kl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (1092)
                      |++|||+++.....                                                                  
T Consensus       170 kl~DFG~a~~~~~~------------------------------------------------------------------  183 (328)
T d3bqca1         170 RLIDWGLAEFYHPG------------------------------------------------------------------  183 (328)
T ss_dssp             EECCGGGCEECCTT------------------------------------------------------------------
T ss_pred             eecccccceeccCC------------------------------------------------------------------
Confidence            99999998764410                                                                  


Q ss_pred             ccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC-CCCccccchhhhHHHHHHcC
Q 001366          449 VSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG-VCTTSSNIYSLGVLFFELFG  527 (1092)
Q Consensus       449 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~-~~t~~sDIwSLGvll~ell~  527 (1092)
                                                            ...+..+||+.|+|||.+.+. .++.++|||||||++|||++
T Consensus       184 --------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~  225 (328)
T d3bqca1         184 --------------------------------------QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF  225 (328)
T ss_dssp             --------------------------------------CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------CcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhcc
Confidence                                                  001245789999999998874 47999999999999999997


Q ss_pred             C---CCcHH-HHHH--HHHhccc------------c---------------------CCCCCCCCCChhHHHHHHhcccc
Q 001366          528 R---FDSER-ALAA--AMSDLRD------------R---------------------ILPPSFLSENPKEAGFCLWQLHP  568 (1092)
Q Consensus       528 ~---f~~~~-~~~~--~~~~~~~------------~---------------------~~p~~~~~~~~~~~~li~~lL~~  568 (1092)
                      +   |.... ...+  .+.....            .                     ...+.....++++.+||.+||++
T Consensus       226 g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~  305 (328)
T d3bqca1         226 RKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRY  305 (328)
T ss_dssp             TCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCS
T ss_pred             CCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccC
Confidence            5   32211 1111  1100000            0                     01112234568899999999999


Q ss_pred             CCCCCCCHHHHhhhhhhhhh
Q 001366          569 EPLSRPTTREILQSEVTNEF  588 (1092)
Q Consensus       569 dP~~Rpsa~eiL~~~~~~~~  588 (1092)
                      ||.+|||++|+|+||||...
T Consensus       306 dP~~R~ta~e~L~Hp~F~~v  325 (328)
T d3bqca1         306 DHQSRLTAREAMEHPYFYTV  325 (328)
T ss_dssp             SGGGSCCHHHHHTSGGGTTS
T ss_pred             ChhHCcCHHHHhcCcccCCC
Confidence            99999999999999999864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=1.5e-29  Score=280.39  Aligned_cols=288  Identities=18%  Similarity=0.247  Sum_probs=241.0

Q ss_pred             chhhhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC
Q 001366          723 NDLLRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS  800 (1092)
Q Consensus       723 ~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D  800 (1092)
                      ..+|++|.+.+.++.+    +|++  .++++.|+++++|+....+....     +..|...|++++|+|++.++++|+.|
T Consensus        48 ~~tL~GH~~~I~~l~~----s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~-----~~~~~~~v~~v~~~~~~~~l~~~~~d  118 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHW----GTDSRLLVSASQDGKLIIWDSYTTNKVHA-----IPLRSSWVMTCAYAPSGNYVACGGLD  118 (340)
T ss_dssp             EEEECCCSSCEEEEEE----CTTSSEEEEEETTTEEEEEETTTTEEEEE-----EECSCSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEECCCCCCEEEEEE----CCCCCEEEEEECCCceeeeecccceeEEE-----EecccccEEeeEeeccceeeeeeccc
Confidence            4668899998887654    4544  45788999999999988766543     45789999999999999999999999


Q ss_pred             CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEe
Q 001366          801 KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFS  880 (1092)
Q Consensus       801 ~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fs  880 (1092)
                      +.+.+|+......   .........+|.....+..+..  ...++.+..|.....|+............+...+....+.
T Consensus       119 ~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (340)
T d1tbga_         119 NICSIYNLKTREG---NVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             CCEEEEESSSSCS---CCCEEEEECCCSSCEEEEEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             ceeeccccccccc---ccccceeccccccccccccccc--ccccccccccccccccccccccccccccccceeEeeeccc
Confidence            9999999765221   1112223345666666666655  5788889999999999998888777777888889999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceE-EecCCCC
Q 001366          881 QVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC-VLAGHEK  958 (1092)
Q Consensus       881 p~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~-~l~~H~~  958 (1092)
                      + ...++++|+.|+.|++||+++++++.++. |...|++++|+|++. +|++|+.|+.|++||++....... ....|..
T Consensus       194 ~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~  271 (340)
T d1tbga_         194 P-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIIC  271 (340)
T ss_dssp             T-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred             c-ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeecccccccccccccccC
Confidence            8 88899999999999999999999999887 578899999999985 899999999999999997754322 2346677


Q ss_pred             CeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          959 AVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       959 ~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      .|.+++|+ ++.+|++|+.||.|++||+.        .+.++.++.+|...|++++|+|++.+||+||.||.|+|||
T Consensus       272 ~i~~~~~s~~~~~l~~g~~dg~i~iwd~~--------~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         272 GITSVSFSKSGRLLLAGYDDFNCNVWDAL--------KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECSSSCEEEEEETTSCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ceEEEEECCCCCEEEEEECCCEEEEEECC--------CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            89999999 67789999999999999998        4577899999999999999999999999999999999996

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.3e-33  Score=320.58  Aligned_cols=258  Identities=14%  Similarity=0.154  Sum_probs=175.7

Q ss_pred             hHHHhhhcc--ccceeeeCCCCCccccccccccccccccccCc-hhhHhhhhhhhhhccCCCCCCCccccceecCCCCCC
Q 001366          213 EFFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMP-SDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDL  289 (1092)
Q Consensus       213 ~~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1092)
                      .|.+.+.+|  +.|+||+|...    ..+..+|.|+....... ....+..++..++...+||||+.+++......... 
T Consensus        18 ~Y~i~~~LG~G~fg~V~~~~d~----~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~-   92 (355)
T d2b1pa1          18 RYQNLKPIGSGAQGIVCAAYDA----VLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLE-   92 (355)
T ss_dssp             TEEEEEECSCC--CEEEEEEET----TTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTT-
T ss_pred             CeEEEEEeecCcCeEEEEEEEC----CCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccc-
Confidence            466644444  78999999752    23566777776432222 22334567788889999999998877755332211 


Q ss_pred             CccCCCCCccccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEE
Q 001366          290 GARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVK  369 (1092)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vk  369 (1092)
                        ...-.+       .+||||.|+.|..+ .   ..++..+++.+++||+.||+|||++||+||||||+|||++.++.+|
T Consensus        93 --~~~~~~-------iv~Ey~~~~l~~~~-~---~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~k  159 (355)
T d2b1pa1          93 --EFQDVY-------LVMELMDANLCQVI-Q---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLK  159 (355)
T ss_dssp             --TCCEEE-------EEEECCSEEHHHHH-T---SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEE
T ss_pred             --cCceeE-------EEEeccchHHHHhh-h---cCCCHHHHHHHHHHHHHHHHHhhhcccccccCCcccccccccccee
Confidence              011112       38999987666544 2   3477889999999999999999999999999999999999999999


Q ss_pred             EecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccc
Q 001366          370 YIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEV  449 (1092)
Q Consensus       370 l~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (1092)
                      ++|||+++.....                                                                   
T Consensus       160 l~df~~~~~~~~~-------------------------------------------------------------------  172 (355)
T d2b1pa1         160 ILDFGLARTAGTS-------------------------------------------------------------------  172 (355)
T ss_dssp             ECCCCC--------------------------------------------------------------------------
T ss_pred             eechhhhhccccc-------------------------------------------------------------------
Confidence            9999987653310                                                                   


Q ss_pred             cCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC-
Q 001366          450 SIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR-  528 (1092)
Q Consensus       450 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~-  528 (1092)
                                                           ...+..+||+.|+|||++.+..++.++|||||||++|||++| 
T Consensus       173 -------------------------------------~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~  215 (355)
T d2b1pa1         173 -------------------------------------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK  215 (355)
T ss_dssp             ---------------------------------------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------cccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCC
Confidence                                                 011245789999999999999999999999999999999986 


Q ss_pred             --CCcHHHHHHHHHhccc---------------------cC-----------CCCC-C-------CCCChhHHHHHHhcc
Q 001366          529 --FDSERALAAAMSDLRD---------------------RI-----------LPPS-F-------LSENPKEAGFCLWQL  566 (1092)
Q Consensus       529 --f~~~~~~~~~~~~~~~---------------------~~-----------~p~~-~-------~~~~~~~~~li~~lL  566 (1092)
                        |.+..........+..                     ..           .+.. .       ...++.+.+|+.+||
T Consensus       216 ~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL  295 (355)
T d2b1pa1         216 ILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKML  295 (355)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHC
Confidence              5443332222111110                     00           0000 0       012356789999999


Q ss_pred             ccCCCCCCCHHHHhhhhhhhhhhccc
Q 001366          567 HPEPLSRPTTREILQSEVTNEFQEVC  592 (1092)
Q Consensus       567 ~~dP~~Rpsa~eiL~~~~~~~~~~~~  592 (1092)
                      ++||++||||+|||+||||.+..+..
T Consensus       296 ~~dP~~R~ta~elL~Hpw~~~~~~~~  321 (355)
T d2b1pa1         296 VIDPAKRISVDDALQHPYINVWYDPA  321 (355)
T ss_dssp             CSSTTTSCCHHHHHTSTTTGGGCCHH
T ss_pred             cCChhHCcCHHHHhcCcccCCCCCcc
Confidence            99999999999999999999765433

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.7e-33  Score=313.52  Aligned_cols=251  Identities=16%  Similarity=0.100  Sum_probs=184.6

Q ss_pred             HHHhhhc--cccceeeeCCCCCcc-ccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCC
Q 001366          214 FFVKTTL--KGKGIVCRGPPLNAF-KERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLG  290 (1092)
Q Consensus       214 ~~~~~~~--~g~Gvv~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (1092)
                      |.+.+.+  ||+|.||+|...... ...+..+|.|+............-.++..++....||||+.++.....+...+  
T Consensus        22 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~--   99 (308)
T d1p4oa_          22 ITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTL--   99 (308)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCE--
T ss_pred             eEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCcee--
Confidence            3444444  478999999762110 11234566665533222333334567888899999999998877655433333  


Q ss_pred             ccCCCCCccccCCCcccccCCCCCHHHHHhhcC---------CCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeE
Q 001366          291 ARTGVPASCWIGGLRQGSSDHGVNLREWLNARG---------HKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFK  361 (1092)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~GgsL~~~l~~~~---------~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nil  361 (1092)
                                    .+||||.+|+|.+++....         ..++...+..|+.||+.||.|||+++|+||||||+|||
T Consensus       100 --------------lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiL  165 (308)
T d1p4oa_         100 --------------VIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCM  165 (308)
T ss_dssp             --------------EEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEE
T ss_pred             --------------EEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCcee
Confidence                          3899999999999985432         23577789999999999999999999999999999999


Q ss_pred             EccCCcEEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCccccc
Q 001366          362 LLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETA  441 (1092)
Q Consensus       362 l~~~~~vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (1092)
                      |+.++++||+|||+++.+.+...                                                         
T Consensus       166 ld~~~~~Kl~DFGla~~~~~~~~---------------------------------------------------------  188 (308)
T d1p4oa_         166 VAEDFTVKIGDFGMTRDIYETDY---------------------------------------------------------  188 (308)
T ss_dssp             ECTTCCEEECCTTCCCGGGGGGC---------------------------------------------------------
T ss_pred             ecCCceEEEeecccceeccCCcc---------------------------------------------------------
Confidence            99999999999999987542110                                                         


Q ss_pred             CccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHH
Q 001366          442 NESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVL  521 (1092)
Q Consensus       442 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvl  521 (1092)
                                                                  ....+...||+.|+|||.+.+..++.++|||||||+
T Consensus       189 --------------------------------------------~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~i  224 (308)
T d1p4oa_         189 --------------------------------------------YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV  224 (308)
T ss_dssp             --------------------------------------------EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             --------------------------------------------eeeccceecccccCCHHHHccCCCCcccccccHHHH
Confidence                                                        000114568999999999999999999999999999


Q ss_pred             HHHHcCC----CCcHHHHHHHHHhccccCCCCCCCCCChhHHHHHHhccccCCCCCCCHHHHhhh
Q 001366          522 FFELFGR----FDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQS  582 (1092)
Q Consensus       522 l~ell~~----f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~  582 (1092)
                      ||||+++    |.... .......+.....++.....++.+.+|+.+||+++|.+|||+.+|+++
T Consensus       225 l~El~t~~~~p~~~~~-~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~  288 (308)
T d1p4oa_         225 LWEIATLAEQPYQGLS-NEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  288 (308)
T ss_dssp             HHHHHHTSCCTTTTSC-HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCC-HHHHHHHHHhCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            9999964    33322 223333333333444445667899999999999999999999999984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.1e-30  Score=290.15  Aligned_cols=286  Identities=19%  Similarity=0.231  Sum_probs=231.9

Q ss_pred             ccchhhhhhccccccCCCCcE-EeEcCCeEEEEEcccceEEeeEEe-------------eeecCCCCCEEEEEEcCCCCE
Q 001366          728 DRENLFLAQQDQEIQNPTDRL-GAFFDGLCKYARYSKFEVQGMLRT-------------GEFNNSANVICSISFDRDEDH  793 (1092)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~l-~~~~D~~~k~w~~~~~~~~~~l~~-------------~~l~~h~~~V~sl~fspdg~~  793 (1092)
                      +|.+.+.++.+    +|++.+ ....|+++++|+..+.+....+..             .....|...|++++|+|+|++
T Consensus        60 ~H~~~V~~l~f----s~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          60 DHTSVVCCVKF----SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             ECSSCCCEEEE----CTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CCCCcEEEEEE----CCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            46677766544    565543 334699999999987766554421             123468889999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCcc
Q 001366          794 FAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKR  873 (1092)
Q Consensus       794 latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~  873 (1092)
                      |++|+.|++|++|+...       ........+|...|.+++|+++ +..+++++.++.|++||..+.........+.. 
T Consensus       136 l~s~~~dg~v~i~~~~~-------~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-  206 (388)
T d1erja_         136 LATGAEDRLIRIWDIEN-------RKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-  206 (388)
T ss_dssp             EEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECSSC-
T ss_pred             ceecccccccccccccc-------cccccccccccccccccccccc-cccccccccceeeeeeeccccccccccccccc-
Confidence            99999999999999865       2233345678999999999997 88999999999999999999888777765544 


Q ss_pred             EEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe--------cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCC
Q 001366          874 AWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK--------NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRN  945 (1092)
Q Consensus       874 V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~--------~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~  945 (1092)
                      ..++.+.+.++.+|++|+.|+.|++||++++..+..+.        |...|.+++|+|++. +|++|+.|+.|++||+++
T Consensus       207 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~  285 (388)
T d1erja_         207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQN  285 (388)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCCcEEEEeccC
Confidence            55677777688999999999999999999998877664        456799999999985 899999999999999986


Q ss_pred             CCc-----------ceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEE
Q 001366          946 ARA-----------PWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVG 1013 (1092)
Q Consensus       946 ~~~-----------~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~ 1013 (1092)
                      ...           .......|...|.+++|+ ++.+|++|+.||+|++||+.        ++.++.++.+|.+.|.+++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~--------~~~~~~~l~~H~~~V~~~~  357 (388)
T d1erja_         286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK--------SGNPLLMLQGHRNSVISVA  357 (388)
T ss_dssp             -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT--------TCCEEEEEECCSSCEEEEE
T ss_pred             CccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECC--------CCcEEEEEeCCCCCEEEEE
Confidence            532           233456789999999999 67899999999999999998        4678899999999999987


Q ss_pred             E------ecCCCEEEEEecCCcEEEEeC
Q 001366         1014 L------STADGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus      1014 ~------spdg~~lasgs~Dg~I~Iwd~ 1035 (1092)
                      +      +|++.+||+||.||+|+||++
T Consensus       358 ~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         358 VANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             ECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            5      578899999999999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-28  Score=272.70  Aligned_cols=321  Identities=17%  Similarity=0.259  Sum_probs=248.4

Q ss_pred             hhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 001366          724 DLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKI  803 (1092)
Q Consensus       724 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I  803 (1092)
                      .+|++|.+.+....   ..+++-.++++.|+++++|++...++..     .+.+|...|.+++|+++  +|++|+.|+++
T Consensus        10 ~~l~GH~~~V~s~~---~~~g~~l~sgs~Dg~i~vWd~~~~~~~~-----~~~~h~~~V~~v~~~~~--~l~s~s~D~~~   79 (342)
T d2ovrb2          10 KVLKGHDDHVITCL---QFCGNRIVSGSDDNTLKVWSAVTGKCLR-----TLVGHTGGVWSSQMRDN--IIISGSTDRTL   79 (342)
T ss_dssp             EEEECSTTSCEEEE---EEETTEEEEEETTSCEEEEETTTCCEEE-----ECCCCSSCEEEEEEETT--EEEEEETTSCE
T ss_pred             EEECCcCCceEEEE---EECCCEEEEEeCCCeEEEEECCCCCEEE-----EEeCCCCCEEEEEeCCC--ccccceecccc
Confidence            46889988764321   1234446688999999999998776544     36689999999999874  99999999999


Q ss_pred             EEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCC
Q 001366          804 KIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVH  883 (1092)
Q Consensus       804 ~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~  883 (1092)
                      ++|+....       ........+...+....+.   ...++.+..|+++.+|+..+++....+..+.......  .+ .
T Consensus        80 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~-~  146 (342)
T d2ovrb2          80 KVWNAETG-------ECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV--QY-D  146 (342)
T ss_dssp             EEEETTTT-------EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE--EE-C
T ss_pred             cccccccc-------cceecccccceeEeeeecc---cccccccccceeEEEeecccccceeeeecccccceee--cc-c
Confidence            99998651       1112222344555555554   4588899999999999999998887776555544333  33 4


Q ss_pred             CCEEEEEeCCCcEEEEecCCCceeeeEec-CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEE
Q 001366          884 PTKLASGSDDCSVKLWNINEKNSLATIKN-IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSY  962 (1092)
Q Consensus       884 ~~~laSgs~Dg~I~iWDl~~~~~l~~l~~-~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~  962 (1092)
                      ...+++++.|+.|++||++...++..+.. ...+.++.+  ++ .++++|+.||.|++||++..+ .+..+.+|...|.+
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~-~~l~s~~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~  222 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSG  222 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEE
T ss_pred             cceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CC-CEEEEEeCCCeEEEeecccce-eeeEecccccceeE
Confidence            57899999999999999999988888773 445555554  45 489999999999999999875 46788899999999


Q ss_pred             EEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC---CCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCC
Q 001366          963 VKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG---HTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPM 1039 (1092)
Q Consensus       963 v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~---h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~ 1039 (1092)
                      +.++ +++|++|+.|+.|++||+..        ......+..   |...+.++.+  ++.++++|+.||+|+|||+.+++
T Consensus       223 ~~~~-~~~l~s~s~d~~i~iwd~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~  291 (342)
T d2ovrb2         223 MELK-DNILVSGNADSTVKIWDIKT--------GQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGE  291 (342)
T ss_dssp             EEEE-TTEEEEEETTSCEEEEETTT--------CCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCC
T ss_pred             EecC-CCEEEEEcCCCEEEEEeccc--------ccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCC
Confidence            9986 56999999999999999984        334455544   4555555555  45699999999999999999999


Q ss_pred             ceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCe----EEEEEc
Q 001366         1040 PITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGC----IKVLQM 1091 (1092)
Q Consensus      1040 ~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~----V~vW~l 1091 (1092)
                      .+..+..         ....+|...|++|+|+|++.+||+|+.||+    |++||+
T Consensus       292 ~i~~~~~---------~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         292 FIRNLVT---------LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             EEEEEEE---------CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             EEEEEec---------ccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence            8887652         112456788999999999999999999985    999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.5e-29  Score=281.09  Aligned_cols=284  Identities=12%  Similarity=0.099  Sum_probs=221.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCc-EEEEEcCCCCCCCcccccceeeecC-CCCeEEEEEecC-CCCEEEEEECCCcEEEEE
Q 001366          781 VICSISFDRDEDHFAAAGVSKK-IKIFEFNALFNDSVDVYYPAVEMSN-RSKLSCVCWNNY-IKNYLASADYDGVVKLWD  857 (1092)
Q Consensus       781 ~V~sl~fspdg~~latgg~D~~-I~Iwd~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~-~~~~LaSgs~DgtV~IWD  857 (1092)
                      .+++++|+|+|+.||.++.+.. |+.|+....     .........+| ...|++++|+|+ ++.+|++|+.||+|+|||
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~-----~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd   93 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS-----KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   93 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCC-----SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCC-----CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEee
Confidence            4567899999999999865532 344543221     11122233455 467999999984 368999999999999999


Q ss_pred             CCCCce--------EEEeeccCccEEEEEEecCCCCEEEEEeC--CCcEEEEecCCCceeeeEe-cCCceEEEEEccCCC
Q 001366          858 ACTGQT--------VSHYIEHEKRAWSVDFSQVHPTKLASGSD--DCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSS  926 (1092)
Q Consensus       858 ~~tg~~--------i~~l~~h~~~V~sv~fsp~~~~~laSgs~--Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~  926 (1092)
                      +..++.        ...+..|..+|.+++|++ ++..+++++.  ++.+++|+..+++++..+. |...|.+++|+|++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  172 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP  172 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccceeeeeccccccccccccccc
Confidence            876432        233557889999999999 8888877764  7789999999999998887 678899999999998


Q ss_pred             eEEEEEECCCeEEEEEcCCCCcceE--EecCCCCCeEEEEEcC--CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEE
Q 001366          927 HLLAFGSADYRTYCYDLRNARAPWC--VLAGHEKAVSYVKFLD--SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTF 1002 (1092)
Q Consensus       927 ~~latgs~Dg~I~vwDlr~~~~~~~--~l~~H~~~V~~v~fs~--~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l 1002 (1092)
                      .++++++.|+.|++||+...+....  ...+|...|.+++|++  +.+|++++.|+.|++||++        .+.++.++
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~--------~~~~~~~l  244 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK--------SGEFLKYI  244 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT--------TCCEEEEC
T ss_pred             ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec--------cccccccc
Confidence            7889999999999999987653222  2356788999999984  4689999999999999998        45678889


Q ss_pred             cCCCCCeEEEEEe---cCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCC--EEEEEEeCCCCEE
Q 001366         1003 SGHTNEKNFVGLS---TADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLF--VSSVCWRRRSDMV 1077 (1092)
Q Consensus      1003 ~~h~~~V~~v~~s---pdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~--V~sva~spd~~~L 1077 (1092)
                      .+|...+..+.|+   |+|.+|++|+.|+.|+|||+.+++++..+..            ..+...  ..++.|.++ ..|
T Consensus       245 ~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~l  311 (325)
T d1pgua1         245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL------------DKQQLGNQQVGVVATGN-GRI  311 (325)
T ss_dssp             CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC------------CTTCGGGCEEEEEEEET-TEE
T ss_pred             cccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe------------cCCcccCeEEEEEECCC-CEE
Confidence            9898887766665   6899999999999999999999998877653            122223  334455544 478


Q ss_pred             EEEecCCeEEEEEc
Q 001366         1078 VAANSSGCIKVLQM 1091 (1092)
Q Consensus      1078 asgs~DG~V~vW~l 1091 (1092)
                      +||+.||.|+||+|
T Consensus       312 ~s~s~dg~i~vwdl  325 (325)
T d1pgua1         312 ISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTSCEEEEET
T ss_pred             EEEECCCEEEEEEC
Confidence            89999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.5e-29  Score=287.33  Aligned_cols=245  Identities=15%  Similarity=0.183  Sum_probs=206.5

Q ss_pred             CCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc--eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCc
Q 001366          828 RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ--TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKN  905 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~--~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~  905 (1092)
                      ..+|+|++|+|+ +++||+|+.||.|+|||+.+++  .+..+.+|...|++++|+| ++++|++|+.|++|+|||+.++.
T Consensus         7 ~~pIt~~~~s~d-g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCeEEEEECCC-CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeecccc
Confidence            478999999998 8999999999999999998775  6778899999999999999 88999999999999999998776


Q ss_pred             eeeeEe---cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc---eEEecCCCCCeEEEEEc-CCCEEEEEECCC
Q 001366          906 SLATIK---NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP---WCVLAGHEKAVSYVKFL-DSGTLVTASTDN  978 (1092)
Q Consensus       906 ~l~~l~---~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~---~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg  978 (1092)
                      ....+.   +...|.+++|+|++. .|++|+.|+.|++|++......   .....+|...|.+++|+ ++.+|++|+.|+
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~  163 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  163 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccccc-cceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCc
Confidence            544443   567899999999985 8999999999999998765432   23456799999999999 567899999999


Q ss_pred             eEEEEEcCCCCCCC----------CCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccc
Q 001366          979 KLKLWDLKRTSHTG----------PSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGS 1048 (1092)
Q Consensus       979 ~I~vWDl~~~~~~~----------~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~ 1048 (1092)
                      +|++||+.......          ...+..+....+|...|++++|+|+|.+|++|+.|+.|++||...+..+..+.   
T Consensus       164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~---  240 (371)
T d1k8kc_         164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA---  240 (371)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE---
T ss_pred             EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee---
Confidence            99999987532111          12235667778899999999999999999999999999999998888776653   


Q ss_pred             cCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1049 IDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1049 ~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                                 .|..+|.+++|+|++.+|++| .|+.+++|.
T Consensus       241 -----------~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~  270 (371)
T d1k8kc_         241 -----------SETLPLLAVTFITESSLVAAG-HDCFPVLFT  270 (371)
T ss_dssp             -----------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred             -----------cccccceeeeecCCCCEEEEE-cCCceEEEE
Confidence                       467789999999999888765 478777765

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.4e-32  Score=302.15  Aligned_cols=243  Identities=14%  Similarity=0.087  Sum_probs=166.6

Q ss_pred             hccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCc
Q 001366          219 TLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPAS  298 (1092)
Q Consensus       219 ~~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (1092)
                      ..||+|.||+|...      +..+|.|++....  .....+-++...+...+||||+.++.....+....     ...  
T Consensus        12 G~G~fg~Vy~~~~~------g~~vAvK~~~~~~--~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~-----~~~--   76 (303)
T d1vjya_          12 GKGRFGEVWRGKWR------GEEVAVKIFSSRE--ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW-----TQL--   76 (303)
T ss_dssp             ECCSSSEEEEEEET------TEEEEEEEECGGG--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSS-----EEE--
T ss_pred             eeCCCeEEEEEEEC------CEEEEEEEECccc--hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcc-----eEE--
Confidence            45689999999863      4556666653221  11122233444455678999998776655332110     000  


Q ss_pred             cccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhh--------cCccccCCCCCCeEEccCCcEEE
Q 001366          299 CWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHT--------QGVTFLDLKPSSFKLLQSNQVKY  370 (1092)
Q Consensus       299 ~~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs--------~gIvHrDLKP~Nill~~~~~vkl  370 (1092)
                           ..+||||++|+|.++|++.  .++..+.+.++.|++.||+|+|+        +||+||||||+||||+.++.+||
T Consensus        77 -----~lv~Ey~~~g~L~~~l~~~--~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl  149 (303)
T d1vjya_          77 -----WLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI  149 (303)
T ss_dssp             -----EEEEECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEE
T ss_pred             -----EEEEecccCCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEE
Confidence                 1389999999999999875  57787899999999999999996        59999999999999999999999


Q ss_pred             ecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCcccccccc
Q 001366          371 IGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVS  450 (1092)
Q Consensus       371 ~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  450 (1092)
                      +|||+++.......                                                                  
T Consensus       150 ~DFGl~~~~~~~~~------------------------------------------------------------------  163 (303)
T d1vjya_         150 ADLGLAVRHDSATD------------------------------------------------------------------  163 (303)
T ss_dssp             CCCTTCEEEETTTT------------------------------------------------------------------
T ss_pred             EecCccccccCCCc------------------------------------------------------------------
Confidence            99999987541100                                                                  


Q ss_pred             CCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCC------CCCccccchhhhHHHHH
Q 001366          451 IPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGG------VCTTSSNIYSLGVLFFE  524 (1092)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~------~~t~~sDIwSLGvll~e  524 (1092)
                                                       .........+||+.|||||++.+.      .++.++|||||||+|||
T Consensus       164 ---------------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~e  210 (303)
T d1vjya_         164 ---------------------------------TIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE  210 (303)
T ss_dssp             ---------------------------------EECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------ceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHH
Confidence                                             000111256899999999998764      36789999999999999


Q ss_pred             HcCCCCcH-----------------HHHHHHHHhccccCCCCCCCCC------ChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          525 LFGRFDSE-----------------RALAAAMSDLRDRILPPSFLSE------NPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       525 ll~~f~~~-----------------~~~~~~~~~~~~~~~p~~~~~~------~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                      |+++....                 ..............+.|.++..      ...+.+|+.+||++||++|||+.||++
T Consensus       211 l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~  290 (303)
T d1vjya_         211 IARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             HHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred             HhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence            99852110                 0111111112222222222111      134779999999999999999999987


Q ss_pred             h
Q 001366          582 S  582 (1092)
Q Consensus       582 ~  582 (1092)
                      +
T Consensus       291 ~  291 (303)
T d1vjya_         291 T  291 (303)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.4e-29  Score=275.54  Aligned_cols=297  Identities=11%  Similarity=0.055  Sum_probs=223.3

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .+.+|.+.|++|+|+|++++||+|+.|++|+|||+....    .........+|..+|.+++|+|+.+.+|++|+.||+|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~----~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCC----cceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            356899999999999999999999999999999987521    1112233457999999999999767799999999999


Q ss_pred             EEEECCCCceEEEeeccCccEE-EEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-------cCCceEEEEEccCC
Q 001366          854 KLWDACTGQTVSHYIEHEKRAW-SVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-------NIANVCCVQFSAHS  925 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~-sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-------~~~~V~sl~fsp~~  925 (1092)
                      ++|++..+........+...+. ...+.+ +...+++++.|+++++||++++.......       .........+.+.+
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeeccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            9999998887777665554443 444444 78899999999999999998665443332       12234556666766


Q ss_pred             CeEEEEEECCCeEEEEEcCCCCcc--eEEecCCCCCeEEEEEc--CCCEEEEEECCCeEEEEEcCCCCCCCCCCCce---
Q 001366          926 SHLLAFGSADYRTYCYDLRNARAP--WCVLAGHEKAVSYVKFL--DSGTLVTASTDNKLKLWDLKRTSHTGPSTNAC---  998 (1092)
Q Consensus       926 ~~~latgs~Dg~I~vwDlr~~~~~--~~~l~~H~~~V~~v~fs--~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~---  998 (1092)
                      . .+++++.|+.|++||++.....  ......+...+.++.+.  ++..+++++.||.+.+|+..............   
T Consensus       161 ~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         161 S-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             S-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             C-ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            4 8999999999999999876542  23334455566666664  56789999999999999987543221111111   


Q ss_pred             ----eEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCC
Q 001366          999 ----SLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRS 1074 (1092)
Q Consensus       999 ----~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~ 1074 (1092)
                          .....+|...+++++|+|++.+||+|+.||.|+|||+.+++.+..+.             ..  ..+..++|+|++
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~-------------~~--~~~~~~~~s~~~  304 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-------------KF--NEDSVVKIACSD  304 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-------------CC--SSSEEEEEEECS
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec-------------CC--CCCEEEEEEeCC
Confidence                11223577789999999999999999999999999999988776543             11  235568889999


Q ss_pred             CEEEEEecCCeEEEEEc
Q 001366         1075 DMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1075 ~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++|++|++|+.+++|..
T Consensus       305 ~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         305 NILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SEEEEEEECTHHHHCSS
T ss_pred             CEEEEEEcCCcEEEeee
Confidence            99999999988777643

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.97  E-value=1.9e-31  Score=296.40  Aligned_cols=243  Identities=12%  Similarity=0.042  Sum_probs=168.8

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .||+|+||+|...    ..+..+|.|+.............+++.+.+.  .+++++.++.....+...+           
T Consensus        15 ~G~fG~Vy~a~~~----~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~--~~~~i~~~~~~~~~~~~~~-----------   77 (293)
T d1csna_          15 EGSFGVIFEGTNL----LNNQQVAIKFEPRRSDAPQLRDEYRTYKLLA--GCTGIPNVYYFGQEGLHNV-----------   77 (293)
T ss_dssp             ECSSCEEEEEEET----TTTEEEEEEEEECCTTSCCHHHHHHHHHHTT--TCTTCCCEEEEEEETTEEE-----------
T ss_pred             cCCCeEEEEEEEC----CCCCEEEEEEEccccCcHHHHHHHHHHHHhc--CCCCCCEEEEEeecCCccE-----------
Confidence            3589999999752    2255677776533222222233333333332  3467776665544333333           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc-----CCcEEEeccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ-----SNQVKYIGPI  374 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~-----~~~vkl~Dfg  374 (1092)
                           .+|||| |++|.+++...+..++..+++.|+.|++.||+|||++||+||||||+||||+.     .+.+|++|||
T Consensus        78 -----~vme~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG  151 (293)
T d1csna_          78 -----LVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFG  151 (293)
T ss_dssp             -----EEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCT
T ss_pred             -----EEEEec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccc
Confidence                 267777 79999999888878999999999999999999999999999999999999974     5789999999


Q ss_pred             ccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCC
Q 001366          375 IQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHS  454 (1092)
Q Consensus       375 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  454 (1092)
                      +++...++....                                                                    
T Consensus       152 ~a~~~~~~~~~~--------------------------------------------------------------------  163 (293)
T d1csna_         152 MVKFYRDPVTKQ--------------------------------------------------------------------  163 (293)
T ss_dssp             TCEESBCTTTCC--------------------------------------------------------------------
T ss_pred             eeEEcccCcccc--------------------------------------------------------------------
Confidence            998865321100                                                                    


Q ss_pred             CCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCc
Q 001366          455 HNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDS  531 (1092)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~  531 (1092)
                                                  ..+.......+||+.|||||++.+..++.++|||||||++|||+++   |.+
T Consensus       164 ----------------------------~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~  215 (293)
T d1csna_         164 ----------------------------HIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQG  215 (293)
T ss_dssp             ----------------------------BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSS
T ss_pred             ----------------------------ceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCC
Confidence                                        0001112356899999999999999999999999999999999986   321


Q ss_pred             -----HHHHHHHHHhccccCCCC-CCCCCChhHHHHHHhccccCCCCCCCHHHHhh
Q 001366          532 -----ERALAAAMSDLRDRILPP-SFLSENPKEAGFCLWQLHPEPLSRPTTREILQ  581 (1092)
Q Consensus       532 -----~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~  581 (1092)
                           .......+...+....++ .....++++..|+..|+..+|.+||+.+.+.+
T Consensus       216 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~  271 (293)
T d1csna_         216 LKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQG  271 (293)
T ss_dssp             CCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             ccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence                 111111122222222111 12345678999999999999999999877654

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.6e-31  Score=297.88  Aligned_cols=249  Identities=12%  Similarity=0.044  Sum_probs=169.5

Q ss_pred             ccccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCCCCCCCccccceecCCCCCCCccCCCCCcc
Q 001366          220 LKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASC  299 (1092)
Q Consensus       220 ~~g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (1092)
                      .||+|+||+|...    ..++.+|.|+......   .....++..++....|++++..+..........           
T Consensus        17 ~G~fG~Vy~a~~~----~~~~~vAvK~~~~~~~---~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~-----------   78 (299)
T d1ckia_          17 SGSFGDIYLGTDI----AAGEEVAIKLECVKTK---HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYN-----------   78 (299)
T ss_dssp             ECSSSEEEEEEET----TTTEEEEEEEEESCTT---SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEE-----------
T ss_pred             eCCCcEEEEEEEC----CCCCEEEEEEEchhcc---CHHHHHHHHHHHHccCCCcccEEEEEEecCCEE-----------
Confidence            3479999999752    2255677776433222   223345666777777777665433322211111           


Q ss_pred             ccCCCcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEcc---CCcEEEeccccc
Q 001366          300 WIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQ---SNQVKYIGPIIQ  376 (1092)
Q Consensus       300 ~~~~~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~---~~~vkl~Dfg~~  376 (1092)
                          ..+|||| |++|.+.+......++..+++.++.||+.||+|||++||+||||||+|||+..   +..+|++|||++
T Consensus        79 ----~ivme~~-~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a  153 (299)
T d1ckia_          79 ----VMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLA  153 (299)
T ss_dssp             ----EEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSC
T ss_pred             ----EEEEEEc-CCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcc
Confidence                1267776 66787887777778899999999999999999999999999999999999864   456999999999


Q ss_pred             ccccccccCCCCCCchhhhhccccccccccccccchhhcccccCcccccccccccCccCCcccccCccccccccCCCCCC
Q 001366          377 KETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHN  456 (1092)
Q Consensus       377 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  456 (1092)
                      +.+.+.....                                                                      
T Consensus       154 ~~~~~~~~~~----------------------------------------------------------------------  163 (299)
T d1ckia_         154 KKYRDARTHQ----------------------------------------------------------------------  163 (299)
T ss_dssp             EECBCTTTCC----------------------------------------------------------------------
T ss_pred             eecccccccc----------------------------------------------------------------------
Confidence            8765211100                                                                      


Q ss_pred             CcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCccccchhhhHHHHHHcCC---CCcHH
Q 001366          457 DTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGR---FDSER  533 (1092)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~~sDIwSLGvll~ell~~---f~~~~  533 (1092)
                                                ..+.......+||+.|||||.+.+..++.++|||||||++|||+++   |....
T Consensus       164 --------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~  217 (299)
T d1ckia_         164 --------------------------HIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLK  217 (299)
T ss_dssp             --------------------------BCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC
T ss_pred             --------------------------ceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccc
Confidence                                      0011112356899999999999999999999999999999999985   43321


Q ss_pred             HHH---HHHHh--ccccCCCC-CCCCCChhHHHHHHhccccCCCCCCCHHH---Hhhhhhhhh
Q 001366          534 ALA---AAMSD--LRDRILPP-SFLSENPKEAGFCLWQLHPEPLSRPTTRE---ILQSEVTNE  587 (1092)
Q Consensus       534 ~~~---~~~~~--~~~~~~p~-~~~~~~~~~~~li~~lL~~dP~~Rpsa~e---iL~~~~~~~  587 (1092)
                      ...   .....  ......++ .....++++.+|+.+||..+|.+||++.+   +|+++|...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~~~  280 (299)
T d1ckia_         218 AATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  280 (299)
T ss_dssp             -------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHHHc
Confidence            111   11111  11111111 23345788899999999999999999875   466766543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.9e-28  Score=269.46  Aligned_cols=275  Identities=16%  Similarity=0.317  Sum_probs=212.1

Q ss_pred             eecCCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc
Q 001366          774 EFNNSANVI-CSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV  852 (1092)
Q Consensus       774 ~l~~h~~~V-~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt  852 (1092)
                      .|.+|...| +|++|  ++++||||+.|++|+|||+.+       ........+|.+.|++++|+|+  .+|++|+.||+
T Consensus         7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~-------~~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~   75 (355)
T d1nexb2           7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN-------KKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRT   75 (355)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTT-------TEEEEEEECCSSCEEEEEEETT--TEEEEEETTCC
T ss_pred             EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCC-------CcEEEEEECCCCCEEEEEEcCC--CEEEEEecccc
Confidence            467898765 66665  578999999999999999875       2233445679999999999984  68999999999


Q ss_pred             EEEEECCCCceEEEeeccC--ccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-------------------
Q 001366          853 VKLWDACTGQTVSHYIEHE--KRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-------------------  911 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~h~--~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-------------------  911 (1092)
                      |++|+....+.......+.  ..+..+.+.+ ++..+++++.|++|++||+++...+....                   
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            9999999988776655433  3455666677 77889999999999999998765443221                   


Q ss_pred             -----cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEc
Q 001366          912 -----NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDL  985 (1092)
Q Consensus       912 -----~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl  985 (1092)
                           +...+  ..+.+++ .+++++..|+.|++||+++.+ .+....++...+.++.|+ .+..+++++.|++|++||+
T Consensus       155 ~~~~~~~~~v--~~~~~~~-~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  230 (355)
T d1nexb2         155 GVLRGHMASV--RTVSGHG-NIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL  230 (355)
T ss_dssp             EEEECCSSCE--EEEEEET-TEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             eeeeeccccc--ccccccc-ceeeeecccceeeeeeccccc-ceeeeeccccccccccccccceeeecccccceEEeeec
Confidence                 11122  2344455 489999999999999999875 456778888899999998 7778999999999999999


Q ss_pred             CCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCE
Q 001366          986 KRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFV 1065 (1092)
Q Consensus       986 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V 1065 (1092)
                      .        .+.++..+.+|...|+++++++  ++|++|+.||.|++||...........                ...+
T Consensus       231 ~--------~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------~~~~  284 (355)
T d1nexb2         231 E--------NGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYH----------------HTNL  284 (355)
T ss_dssp             T--------TCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEE----------------CTTC
T ss_pred             c--------cccccccccccccccccccccc--ceeeeeecccccccccccccceecccc----------------cCCc
Confidence            8        4567889999999999998874  699999999999999998776544332                2233


Q ss_pred             EE-EEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1066 SS-VCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1066 ~s-va~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .+ .+|++++.+|++| .||.|+||++
T Consensus       285 ~~~~~~~~~~~~l~~g-~d~~i~vwd~  310 (355)
T d1nexb2         285 SAITTFYVSDNILVSG-SENQFNIYNL  310 (355)
T ss_dssp             CCCCEEEECSSEEEEE-ETTEEEEEET
T ss_pred             eEEEEEcCCCCEEEEE-eCCEEEEEEC
Confidence            33 3567788777665 5999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.2e-28  Score=269.39  Aligned_cols=268  Identities=13%  Similarity=0.202  Sum_probs=211.1

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .|.+|..+|++++|+|    |+||+.|++|++||+..            ....|...|.+++|+++  ..+++++.|++|
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~------------~~~~h~~~V~~~~~~~~--~~~~s~s~D~~v   69 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------------MHQDHSNLIVSLDNSKA--QEYSSISWDDTL   69 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTE------------EECCCCSCEEEEECCST--TCCEEEETTTEE
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCC------------CCCCCCCCEEEEEecCC--CeEEEEeecccc
Confidence            4779999999999997    99999999999999754            12468899999999874  678999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      ++|++.+.       .+...+.++.+.+ ++..+++ +.++.+.+|+..++..+..+.....+.+  +++++. .+++++
T Consensus        70 ~~w~~~~~-------~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~  137 (287)
T d1pgua2          70 KVNGITKH-------EFGSQPKVASANN-DGFTAVL-TNDDDLLILQSFTGDIIKSVRLNSPGSA--VSLSQN-YVAVGL  137 (287)
T ss_dssp             EETTEEEE-------ECSSCEEEEEECS-SSEEEEE-ETTSEEEEEETTTCCEEEEEECSSCEEE--EEECSS-EEEEEE
T ss_pred             cccccccc-------ccccceeeeeecc-CCceEEE-eecccceeeeccceeeeeeccccceeee--eeccCc-ceeeec
Confidence            99987432       1344567788887 5555554 5667799999999999988887766654  455665 566666


Q ss_pred             CC-CeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEE
Q 001366          934 AD-YRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNF 1011 (1092)
Q Consensus       934 ~D-g~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~ 1011 (1092)
                      .+ +.|++|++............|...|++++|+ ++.+|++|+.||.|++||+.+..       .....+.+|...|++
T Consensus       138 ~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-------~~~~~~~~h~~~v~~  210 (287)
T d1pgua2         138 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-------VKTSRWAFRTSKINA  210 (287)
T ss_dssp             TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------EEECCSCCCSSCEEE
T ss_pred             cccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc-------cccccccccccccce
Confidence            65 5799999986554434445688899999999 66789999999999999998421       122345689999999


Q ss_pred             EEEecC----------CCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEe
Q 001366         1012 VGLSTA----------DGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAAN 1081 (1092)
Q Consensus      1012 v~~spd----------g~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs 1081 (1092)
                      ++|+|.          +.+||+|+.|++|+||++..+.....             ...+|...|++|+|+|++ .|+|++
T Consensus       211 ~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~-------------~~~~h~~~V~~v~~~~~~-~l~s~g  276 (287)
T d1pgua2         211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK-------------ALNAHKDGVNNLLWETPS-TLVSSG  276 (287)
T ss_dssp             EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE-------------ETTSSTTCEEEEEEEETT-EEEEEE
T ss_pred             eeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEE-------------EeCCCCCCeEEEEECCCC-EEEEEE
Confidence            999875          46899999999999999876443222             235788999999999986 588999


Q ss_pred             cCCeEEEEEcC
Q 001366         1082 SSGCIKVLQMV 1092 (1092)
Q Consensus      1082 ~DG~V~vW~lv 1092 (1092)
                      .||.|++|++|
T Consensus       277 ~D~~v~iW~i~  287 (287)
T d1pgua2         277 ADACIKRWNVV  287 (287)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCCeEEEEEEC
Confidence            99999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.5e-28  Score=259.96  Aligned_cols=279  Identities=16%  Similarity=0.313  Sum_probs=219.1

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          775 FNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       775 l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      +..|...|+|++|  ||++||||+.|++|+|||+.+.       .......+|...|++++|+   +++|+||+.||+|+
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~-------~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~   78 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL-------ECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVR   78 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC-------CEEEEECCCSSCEEEEECC---SSEEEEEETTSCEE
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCC-------cEEEEEecCCCCEeeeecc---cceeeccccccccc
Confidence            4578889998765  7899999999999999998752       2333456799999999985   56999999999999


Q ss_pred             EEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe----cCCceEEEEEccCCCeEEE
Q 001366          855 LWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK----NIANVCCVQFSAHSSHLLA  930 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~----~~~~V~sl~fsp~~~~~la  930 (1092)
                      +|++..+........+......  +.+ ....++++..++.+.+||..+........    +...|.++.+.+.   .++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~  152 (293)
T d1p22a2          79 VWDVNTGEMLNTLIHHCEAVLH--LRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIV  152 (293)
T ss_dssp             EEESSSCCEEEEECCCCSCEEE--EEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEE
T ss_pred             cccccccccccccccccccccc--ccc-cccceeecccccceeEeeccccccccccccccccccccccceeccc---ccc
Confidence            9999999887777655544433  334 55789999999999999998776543332    4667888887653   678


Q ss_pred             EEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeE
Q 001366          931 FGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKN 1010 (1092)
Q Consensus       931 tgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~ 1010 (1092)
                      +++.|+.|++||+++.+ .+..+.+|...|..+.+. +..+++++.||+|++||++        ....+..+.+|...+.
T Consensus       153 ~~s~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~--------~~~~~~~~~~~~~~v~  222 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIE--------CGACLRVLEGHEELVR  222 (293)
T ss_dssp             EEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETT--------TCCEEEEECCCSSCEE
T ss_pred             cccCCCceeeecCCCCc-EEEEEcccccccccccCC-CCeEEEecCCCEEEEEecc--------cceeeeeecccceeee
Confidence            89999999999999876 467788999999998886 6789999999999999998        4566778888888776


Q ss_pred             EEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1011 FVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1011 ~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      .  +++++.+|++|+.||.|++||+..........     .........+|...|++|+|+  +.+|+|||.||+|+|||
T Consensus       223 ~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         223 C--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA-----GTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             E--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCT-----TTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             e--ccccceEEEEEcCCCEEEEEECCCCccccccC-----CceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            4  56778899999999999999965432221110     011122446789999999995  56899999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-27  Score=258.41  Aligned_cols=277  Identities=15%  Similarity=0.296  Sum_probs=223.1

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVV  853 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV  853 (1092)
                      .|.+|.+.|.+ +++++|++|||||.|++|+|||+.+.       .......+|...|.+++|+++   +|++|+.|+++
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~-------~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~~~   79 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG-------KCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTL   79 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC-------CEEEECCCCSSCEEEEEEETT---EEEEEETTSCE
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC-------CEEEEEeCCCCCEEEEEeCCC---ccccceecccc
Confidence            35689998865 36667999999999999999998752       222345679999999999874   99999999999


Q ss_pred             EEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEE
Q 001366          854 KLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       854 ~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      ++|+............+...+....+.   +..++.+..|+.+.+||..+++....+............ .. ..+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~  154 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DG-RRVVSGA  154 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CS-SCEEEEE
T ss_pred             cccccccccceecccccceeEeeeecc---cccccccccceeEEEeecccccceeeeecccccceeecc-cc-ceeeeec
Confidence            999998888777777677777666554   467889999999999999999888877755444433333 33 3788999


Q ss_pred             CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEE
Q 001366          934 ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVG 1013 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~ 1013 (1092)
                      .|+.|++||++... .+..+.+|...+..+.+ ++.+|++|+.||+|++||++        ...++..+.+|...+.+++
T Consensus       155 ~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~~~d~~--------~~~~~~~~~~~~~~v~~~~  224 (342)
T d2ovrb2         155 YDFMVKVWDPETET-CLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVE--------TGNCIHTLTGHQSLTSGME  224 (342)
T ss_dssp             TTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETT--------TCCEEEEECCCCSCEEEEE
T ss_pred             CCCeEEEeecccce-eeEEEcCcccccccccC-CCCEEEEEeCCCeEEEeecc--------cceeeeEecccccceeEEe
Confidence            99999999998765 46778889888887776 57899999999999999998        4567888999999998877


Q ss_pred             EecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1014 LSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1014 ~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      +++  ++|++|+.|+.|++|+....+....+..           ...|...+.+++|+  +.++++|+.||.|+||++
T Consensus       225 ~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         225 LKD--NILVSGNADSTVKIWDIKTGQCLQTLQG-----------PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL  287 (342)
T ss_dssp             EET--TEEEEEETTSCEEEEETTTCCEEEEECS-----------TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             cCC--CEEEEEcCCCEEEEEecccccccccccc-----------cceeeeceeecccC--CCeeEEEcCCCEEEEEEC
Confidence            765  5999999999999999988876665431           13456677777665  569999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-27  Score=266.37  Aligned_cols=251  Identities=18%  Similarity=0.268  Sum_probs=200.7

Q ss_pred             ecCC-CCCEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCCC-CCcccccceeeecCCCCeEEEEEecCCCCEEEEEEC-
Q 001366          775 FNNS-ANVICSISFDR--DEDHFAAAGVSKKIKIFEFNALFN-DSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADY-  849 (1092)
Q Consensus       775 l~~h-~~~V~sl~fsp--dg~~latgg~D~~I~Iwd~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~-  849 (1092)
                      +.+| ...|++++|+|  +|.+||+|+.|++|+|||+..... .............|.++|.+++|+++ +.+|++++. 
T Consensus        58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~~  136 (325)
T d1pgua1          58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEG  136 (325)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECC
T ss_pred             EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCC-CCccceeecc
Confidence            4555 57899999998  568999999999999999864211 11112222234468899999999998 777777654 


Q ss_pred             -CCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe----cCCceEEEEEccC
Q 001366          850 -DGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK----NIANVCCVQFSAH  924 (1092)
Q Consensus       850 -DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~----~~~~V~sl~fsp~  924 (1092)
                       ++.+++|+..+++++..+.+|...|.+++|+|..+.++++++.|+.|++||+...+....+.    +...|.+++|+|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd  216 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD  216 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred             ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccc
Confidence             67899999999999999999999999999999555678899999999999999887766654    3567999999998


Q ss_pred             CCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCe----EEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeE
Q 001366          925 SSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAV----SYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSL 1000 (1092)
Q Consensus       925 ~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V----~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~ 1000 (1092)
                      +..+|++|+.|+.|++||+++++ .+..+.+|...+    .++.|.++.+|++++.|++|+|||++        .+.++.
T Consensus       217 ~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~--------~~~~~~  287 (325)
T d1pgua1         217 SGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT--------TSKCVQ  287 (325)
T ss_dssp             TCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT--------TTEEEE
T ss_pred             cceeccccccccceeeeeecccc-ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECC--------CCCEEE
Confidence            76799999999999999999876 467777777665    45555678899999999999999998        456777


Q ss_pred             EEcCCCCC--eEEEEEecC-CCEEEEEecCCcEEEEeC
Q 001366         1001 TFSGHTNE--KNFVGLSTA-DGYIACGSESNEVYAYHR 1035 (1092)
Q Consensus      1001 ~l~~h~~~--V~~v~~spd-g~~lasgs~Dg~I~Iwd~ 1035 (1092)
                      .+..|...  +..+++.+. +.+|++||.||+|+|||+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            77666554  445555543 358999999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=4.9e-27  Score=257.77  Aligned_cols=286  Identities=16%  Similarity=0.150  Sum_probs=216.6

Q ss_pred             chhhhccchhhhhhccccccCCCC--cEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCC
Q 001366          723 NDLLRDRENLFLAQQDQEIQNPTD--RLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVS  800 (1092)
Q Consensus       723 ~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D  800 (1092)
                      .+++.+|...+.++.+    +|++  .++++.|+++++|+....+....+    ...|...|++++|+|+|.++ +++.|
T Consensus         5 ~~~~~GH~~~V~~l~~----s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~----~~~h~~~v~~v~~~~~g~~~-~~~~d   75 (299)
T d1nr0a2           5 DQVRYGHNKAITALSS----SADGKTLFSADAEGHINSWDISTGISNRVF----PDVHATMITGIKTTSKGDLF-TVSWD   75 (299)
T ss_dssp             EEEECCCSSCEEEEEE----CTTSSEEEEEETTSCEEEEETTTCCEEECS----SCSCSSCEEEEEECTTSCEE-EEETT
T ss_pred             ceEcCCCCCCcEEEEE----CCCCCEEEEEcCCCeEEEEECCCCcEEEEE----cCCCCCcEEEEEeeccceee-cccce
Confidence            3567889888877654    4544  447789999999998776544332    24789999999999999755 55679


Q ss_pred             CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEe
Q 001366          801 KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFS  880 (1092)
Q Consensus       801 ~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fs  880 (1092)
                      +.+++|+.......    ........+...+.+++|+++ +.+++++ .++.+++|+..  +.....  ....+.+++|+
T Consensus        76 ~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~-g~~~~~~-~~~~i~~~~~~--~~~~~~--~~~~~~~~~~s  145 (299)
T d1nr0a2          76 DHLKVVPAGGSGVD----SSKAVANKLSSQPLGLAVSAD-GDIAVAA-CYKHIAIYSHG--KLTEVP--ISYNSSCVALS  145 (299)
T ss_dssp             TEEEEECSSSSSSC----TTSCCEEECSSCEEEEEECTT-SSCEEEE-ESSEEEEEETT--EEEEEE--CSSCEEEEEEC
T ss_pred             eeEEEeccCCcccc----ccccccccccccccccccccc-ccccccc-ccccccccccc--cccccc--ccccccccccc
Confidence            99999997652211    122233456788999999997 6666655 46799999853  333333  34557889999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCceee--eEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc--ceEEecCC
Q 001366          881 QVHPTKLASGSDDCSVKLWNINEKNSLA--TIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA--PWCVLAGH  956 (1092)
Q Consensus       881 p~~~~~laSgs~Dg~I~iWDl~~~~~l~--~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~--~~~~l~~H  956 (1092)
                      | ++.+|++|+.|+.|++||+++++...  ...+...|++++|+|++. +|++++.|+.|++||+.+...  ....+.+|
T Consensus       146 ~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h  223 (299)
T d1nr0a2         146 N-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNSWTFH  223 (299)
T ss_dssp             T-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred             c-cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            9 88999999999999999998876543  445788999999999985 899999999999999987643  23456789


Q ss_pred             CCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCC-CCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          957 EKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHT-NEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       957 ~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~-~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      ...|++++|+ ++.+|++|+.||.|++||+.+...      ........|. ..++++ +++++++|++||.|++|++||
T Consensus       224 ~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~------~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         224 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD------HPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS------CCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccceEEEcCCCEEEEEECCCCCc------ceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEe
Confidence            9999999998 677899999999999999985421      2233334444 455555 456678999999999999999


Q ss_pred             CC
Q 001366         1035 RS 1036 (1092)
Q Consensus      1035 ~~ 1036 (1092)
                      +.
T Consensus       297 l~  298 (299)
T d1nr0a2         297 VP  298 (299)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1e-26  Score=267.53  Aligned_cols=312  Identities=13%  Similarity=0.147  Sum_probs=216.3

Q ss_pred             eecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEE------ecCCCCEEEEE
Q 001366          774 EFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCW------NNYIKNYLASA  847 (1092)
Q Consensus       774 ~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~------sp~~~~~LaSg  847 (1092)
                      ..++|...|+++++++  ++++|||.|++|+|||....... ...........|...+..+..      +.....+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCC-cccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            4579999999999874  69999999999999997642211 111111222334444433332      12123578899


Q ss_pred             ECCCcEEEEECCCCce---EE--Ee-----eccCccEEEEEEecCC----CCEEEEEeCCCcEEEEecCCCce-------
Q 001366          848 DYDGVVKLWDACTGQT---VS--HY-----IEHEKRAWSVDFSQVH----PTKLASGSDDCSVKLWNINEKNS-------  906 (1092)
Q Consensus       848 s~DgtV~IWD~~tg~~---i~--~l-----~~h~~~V~sv~fsp~~----~~~laSgs~Dg~I~iWDl~~~~~-------  906 (1092)
                      +.||+|++|++.....   ..  ..     ..+...++.++|.+..    +..+++++.|+++++||+.....       
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            9999999999764421   11  11     1245668888988732    35789999999999999853211       


Q ss_pred             ----e----eeEe----cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc-----eEEecCCCCCeEEEEEc-CC
Q 001366          907 ----L----ATIK----NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP-----WCVLAGHEKAVSYVKFL-DS  968 (1092)
Q Consensus       907 ----l----~~l~----~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~-----~~~l~~H~~~V~~v~fs-~~  968 (1092)
                          .    ....    +...+.+++|+|++  +||+|+.|++|++||+.+++..     ...+.+|..+|.+|+|+ ++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  243 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  243 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence                0    0111    23458899999987  8999999999999999987542     22456799999999999 67


Q ss_pred             CEEEEEECCCe---EEEEEcCCCCCCC-----CCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCc
Q 001366          969 GTLVTASTDNK---LKLWDLKRTSHTG-----PSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       969 ~~L~Sgs~Dg~---I~vWDl~~~~~~~-----~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                      .+|++|+.|++   |++||+.++....     .........+.+|...|++++|+|++++|++||.|++|+|||+.++++
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER  323 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence            89999999874   9999998533110     001122233458999999999999999999999999999999999999


Q ss_pred             eeeeeccccCCCCCc----ccc----CCCCCCEEEEEEeCCC----------CEEEEEecCCeEEEEEc
Q 001366         1041 ITSYKFGSIDPISGK----ETD----DDNGLFVSSVCWRRRS----------DMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1041 i~~~~~~~~~~i~~~----~~~----~~h~~~V~sva~spd~----------~~Lasgs~DG~V~vW~l 1091 (1092)
                      +..++ ++.+.+...    ...    ......++++.|.+++          ..|++++.|+.|++|+-
T Consensus       324 ~~~l~-gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         324 ITTLN-MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             EEEEE-CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             EEEEC-CcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence            98876 444333211    111    1123458999998853          46999999999999974

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.9e-29  Score=283.24  Aligned_cols=250  Identities=16%  Similarity=0.122  Sum_probs=161.7

Q ss_pred             HHHhhhcc--ccceeeeCCCCCccccccccccccccccccCchhhHhhhhhhhhhccCC-----------CCCCCccccc
Q 001366          214 FFVKTTLK--GKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNA-----------SPKPVGVGTA  280 (1092)
Q Consensus       214 ~~~~~~~~--g~Gvv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  280 (1092)
                      |.+.+.++  |.|+||+|..    ...++.+|.|++....  .......++.+++....           |+|++.+++.
T Consensus        15 Y~i~~~LG~G~fg~Vy~~~~----~~~g~~vAvKvi~~~~--~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~   88 (362)
T d1q8ya_          15 YILVRKLGWGHFSTVWLAKD----MVNNTHVAMKIVRGDK--VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH   88 (362)
T ss_dssp             EEEEEEEEECSSEEEEEEEE----TTTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred             EEEEEEEeeCCCeEEEEEEE----CCCCCEEEEEEEeccc--cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEE
Confidence            56555554  6899999975    2225666776653221  11122333344444443           4556655544


Q ss_pred             eecCCCCCCCccCCCCCccccCCCcccccCCCC-CHHHHH-hhcCCCCCHHHHHHHHHHHHHHHHHhhh-cCccccCCCC
Q 001366          281 VVSNGSLDLGARTGVPASCWIGGLRQGSSDHGV-NLREWL-NARGHKGKRIECLYIFRQIVALVDYHHT-QGVTFLDLKP  357 (1092)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg-sL~~~l-~~~~~~~~~~~~~~i~~qil~~l~~lHs-~gIvHrDLKP  357 (1092)
                      ........              ....|+++.+. +..... .......+...+..+++||+.||+|||+ +||+||||||
T Consensus        89 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp  154 (362)
T d1q8ya_          89 FNHKGPNG--------------VHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKP  154 (362)
T ss_dssp             EEEEETTE--------------EEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSG
T ss_pred             eeeccccc--------------eeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCCh
Confidence            33222111              01134444333 333333 3444567888999999999999999998 9999999999


Q ss_pred             CCeEEccCCc------EEEecccccccccccccCCCCCCchhhhhccccccccccccccchhhcccccCccccccccccc
Q 001366          358 SSFKLLQSNQ------VKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFP  431 (1092)
Q Consensus       358 ~Nill~~~~~------vkl~Dfg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (1092)
                      +||||+..+.      +|++|||.+.....                                                  
T Consensus       155 ~NIll~~~~~~~~~~~~kl~dfg~s~~~~~--------------------------------------------------  184 (362)
T d1q8ya_         155 ENVLMEIVDSPENLIQIKIADLGNACWYDE--------------------------------------------------  184 (362)
T ss_dssp             GGEEEEEEETTTTEEEEEECCCTTCEETTB--------------------------------------------------
T ss_pred             hHeeeeccCcccccceeeEeeccccccccc--------------------------------------------------
Confidence            9999987653      99999998765331                                                  


Q ss_pred             CccCCcccccCccccccccCCCCCCCcccccccCCCCCccCCCCCcccccccccccccccccccccccCcccccCCCCCc
Q 001366          432 SKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTT  511 (1092)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~t~  511 (1092)
                                                                              .....+||+.|+|||++.+..++.
T Consensus       185 --------------------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~  208 (362)
T d1q8ya_         185 --------------------------------------------------------HYTNSIQTREYRSPEVLLGAPWGC  208 (362)
T ss_dssp             --------------------------------------------------------CCCSCCSCGGGCCHHHHHTCCCCT
T ss_pred             --------------------------------------------------------ccccccccccccChhhccccCCCc
Confidence                                                                    001457999999999999999999


Q ss_pred             cccchhhhHHHHHHcCC---CCcHHH---------HHHHHHhccc------------------c----CCC---------
Q 001366          512 SSNIYSLGVLFFELFGR---FDSERA---------LAAAMSDLRD------------------R----ILP---------  548 (1092)
Q Consensus       512 ~sDIwSLGvll~ell~~---f~~~~~---------~~~~~~~~~~------------------~----~~p---------  548 (1092)
                      ++|||||||+|+||+++   |.+...         ....+..+..                  .    ..+         
T Consensus       209 ~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (362)
T d1q8ya_         209 GADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLED  288 (362)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHH
T ss_pred             cccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhh
Confidence            99999999999999986   332211         1111111000                  0    000         


Q ss_pred             ------CCCCCCChhHHHHHHhccccCCCCCCCHHHHhhhhhhhhhh
Q 001366          549 ------PSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQ  589 (1092)
Q Consensus       549 ------~~~~~~~~~~~~li~~lL~~dP~~Rpsa~eiL~~~~~~~~~  589 (1092)
                            ......++.+.+||.+||++||.+||||+|+|+||||.+..
T Consensus       289 ~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~  335 (362)
T d1q8ya_         289 VLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTL  335 (362)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             hcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCC
Confidence                  00012246678999999999999999999999999998553

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.2e-26  Score=260.94  Aligned_cols=263  Identities=14%  Similarity=0.176  Sum_probs=188.1

Q ss_pred             eeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc------eEEEeeccCccEEEEEE------ecCCCCEEEEE
Q 001366          823 VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ------TVSHYIEHEKRAWSVDF------SQVHPTKLASG  890 (1092)
Q Consensus       823 ~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~------~i~~l~~h~~~V~sv~f------sp~~~~~laSg  890 (1092)
                      ...+|...|.+|++++   ++++|||.|++|+|||..+..      .......|...+..+..      ...+..+++++
T Consensus         9 ~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             ESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            3457999999999875   599999999999999976643      12222334433322221      22123568899


Q ss_pred             eCCCcEEEEecCCCceeeeEe-----------cCCceEEEEEccCC----CeEEEEEECCCeEEEEEcCCCCc-------
Q 001366          891 SDDCSVKLWNINEKNSLATIK-----------NIANVCCVQFSAHS----SHLLAFGSADYRTYCYDLRNARA-------  948 (1092)
Q Consensus       891 s~Dg~I~iWDl~~~~~l~~l~-----------~~~~V~sl~fsp~~----~~~latgs~Dg~I~vwDlr~~~~-------  948 (1092)
                      +.||.|++|++........+.           +...+..++|.++.    ..++++++.||.+++||+.....       
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            999999999987554322211           23457788887764    25889999999999999853211       


Q ss_pred             ----------ceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCC
Q 001366          949 ----------PWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTAD 1018 (1092)
Q Consensus       949 ----------~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg 1018 (1092)
                                .......+...+.+++|+++++|++|+.|++|+|||+.+.....  .......+.+|..+|++++|+|+|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~--~~~~~~~l~~h~~~V~~l~~spdg  243 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLY--NFESQHSMINNSNSIRSVKFSPQG  243 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEE--EEECCC---CCCCCEEEEEECSST
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccccc--ccccccccccccceEEEccccccc
Confidence                      01112345667899999988899999999999999998432110  111223556799999999999999


Q ss_pred             CEEEEEecCCc---EEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1019 GYIACGSESNE---VYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1019 ~~lasgs~Dg~---I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .+|++||.|++   |++||+.+++.+..+.... ..........+|...|++|+|+|++++|+|||.||+|+|||+
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~-~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPT-HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeecccc-ccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence            99999999875   8999999999888765311 112222345689999999999999999999999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.7e-24  Score=229.36  Aligned_cols=265  Identities=18%  Similarity=0.342  Sum_probs=207.6

Q ss_pred             CCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccce
Q 001366          743 NPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPA  822 (1092)
Q Consensus       743 ~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~  822 (1092)
                      +++-.++++.|+++++|+..+.++...     +.+|...|++++|  ++++|++|+.|+.|++|++.....        .
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~-----l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~--------~   88 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTLECKRI-----LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM--------L   88 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEE-----ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE--------E
T ss_pred             cCCEEEEEeCCCeEEEEECCCCcEEEE-----EecCCCCEeeeec--ccceeecccccccccccccccccc--------c
Confidence            344456889999999999988776554     4589999999887  578999999999999999875211        1


Q ss_pred             eeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc---eEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEE
Q 001366          823 VEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ---TVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW  899 (1092)
Q Consensus       823 ~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~---~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iW  899 (1092)
                      ...... ......+.+. ...++++..++.+++||..+..   ....+..|...|.++.+.+   ..+++++.|+.|++|
T Consensus        89 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~  163 (293)
T d1p22a2          89 NTLIHH-CEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVW  163 (293)
T ss_dssp             EEECCC-CSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEE
T ss_pred             cccccc-cccccccccc-ccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeee
Confidence            111111 2222334443 6789999999999999988764   3555677888898888865   678999999999999


Q ss_pred             ecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCC
Q 001366          900 NINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDN  978 (1092)
Q Consensus       900 Dl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg  978 (1092)
                      |+++++.+..+. +...+..+.+++   ..+++++.|+.|++||+++.. .+....+|...|..+.+ ++.+|++|+.||
T Consensus       164 d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~-~~~~l~sg~~dg  238 (293)
T d1p22a2         164 NTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRF-DNKRIVSGAYDG  238 (293)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEC-CSSEEEEEETTS
T ss_pred             cCCCCcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccce-eeeeecccceeeeeccc-cceEEEEEcCCC
Confidence            999999998887 456788887764   379999999999999999875 46777888888887654 578999999999


Q ss_pred             eEEEEEcCCCCCCC-CCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEe
Q 001366          979 KLKLWDLKRTSHTG-PSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus       979 ~I~vWDl~~~~~~~-~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      .|++||+....... .....++.++.+|...|++++|+  +.+|++||.||+|+|||
T Consensus       239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            99999987433221 22345678899999999999885  56899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.5e-25  Score=238.50  Aligned_cols=267  Identities=13%  Similarity=0.160  Sum_probs=211.7

Q ss_pred             chhhhccchhhhhhccccccCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 001366          723 NDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKK  802 (1092)
Q Consensus       723 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~  802 (1092)
                      ..+|.+|...+.++.+    +|  .++++.|+++++|+....          ...|...|.+++|++++ .+++++.|++
T Consensus         6 i~~l~gH~~~I~~l~~----s~--l~sgs~Dg~v~~Wd~~~~----------~~~h~~~V~~~~~~~~~-~~~s~s~D~~   68 (287)
T d1pgua2           6 LKTISGHNKGITALTV----NP--LISGSYDGRIMEWSSSSM----------HQDHSNLIVSLDNSKAQ-EYSSISWDDT   68 (287)
T ss_dssp             EEEECCCSSCEEEEET----TT--TEEEETTSCEEETTTTEE----------ECCCCSCEEEEECCSTT-CCEEEETTTE
T ss_pred             eEEECCCCCceEEEEE----Cc--EEEEeCCCeEEEEECCCC----------CCCCCCCEEEEEecCCC-eEEEEeeccc
Confidence            3568889888877654    33  789999999999986542          35799999999998765 6799999999


Q ss_pred             EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecC
Q 001366          803 IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQV  882 (1092)
Q Consensus       803 I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~  882 (1092)
                      |++|++...              .....+.+++++++ +..++ .+.++.+.+|+..+++.+..+..+ ..+  .++++ 
T Consensus        69 v~~w~~~~~--------------~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-  128 (287)
T d1pgua2          69 LKVNGITKH--------------EFGSQPKVASANND-GFTAV-LTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSL-  128 (287)
T ss_dssp             EEETTEEEE--------------ECSSCEEEEEECSS-SEEEE-EETTSEEEEEETTTCCEEEEEECS-SCE--EEEEE-
T ss_pred             ccccccccc--------------ccccceeeeeeccC-CceEE-Eeecccceeeeccceeeeeecccc-cee--eeeec-
Confidence            999987531              12445778888886 54544 556778999999999988887643 334  44566 


Q ss_pred             CCCEEEEEeCC-CcEEEEecCCCceeeeEe--cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCC
Q 001366          883 HPTKLASGSDD-CSVKLWNINEKNSLATIK--NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKA  959 (1092)
Q Consensus       883 ~~~~laSgs~D-g~I~iWDl~~~~~l~~l~--~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~  959 (1092)
                      ++..+++++.| +.+++|++........+.  +...+++++|+|++. +|++|+.||.|++||+.+.......+.+|...
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~  207 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSK  207 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSC
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeecccccccccccccccc
Confidence            56677777766 479999998766655554  467899999999995 89999999999999999876544556789999


Q ss_pred             eEEEEEcC-----------CCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCC
Q 001366          960 VSYVKFLD-----------SGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESN 1028 (1092)
Q Consensus       960 V~~v~fs~-----------~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg 1028 (1092)
                      |.+++|++           +.+|++|+.|++|+|||+.+.       ...+..+.+|...|++++|+|++ .|+++|.|+
T Consensus       208 v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~-------~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~  279 (287)
T d1pgua2         208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-------MKIIKALNAHKDGVNNLLWETPS-TLVSSGADA  279 (287)
T ss_dssp             EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-------TCCEEETTSSTTCEEEEEEEETT-EEEEEETTS
T ss_pred             cceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC-------CeEEEEeCCCCCCeEEEEECCCC-EEEEEECCC
Confidence            99999963           357999999999999999742       34567778999999999999986 688999999


Q ss_pred             cEEEEeC
Q 001366         1029 EVYAYHR 1035 (1092)
Q Consensus      1029 ~I~Iwd~ 1035 (1092)
                      .|++|++
T Consensus       280 ~v~iW~i  286 (287)
T d1pgua2         280 CIKRWNV  286 (287)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.5e-24  Score=238.04  Aligned_cols=261  Identities=14%  Similarity=0.080  Sum_probs=188.1

Q ss_pred             eecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCce---EEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEe
Q 001366          824 EMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQT---VSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWN  900 (1092)
Q Consensus       824 ~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~---i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWD  900 (1092)
                      ..+|...|++|+|+|+ +++||+||.||+|+|||+.++..   +....+|..+|.+++|+|.++.+|++|+.|++|++|+
T Consensus         7 ~~~h~d~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             CCCCCCCEEEEEEeCC-CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            3568999999999998 89999999999999999977643   2333469999999999996677899999999999999


Q ss_pred             cCCCceeeeEec-C-CceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceE---EecCCC--CCeEEEEEc-CCCEEE
Q 001366          901 INEKNSLATIKN-I-ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC---VLAGHE--KAVSYVKFL-DSGTLV  972 (1092)
Q Consensus       901 l~~~~~l~~l~~-~-~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~---~l~~H~--~~V~~v~fs-~~~~L~  972 (1092)
                      +..+........ . .......+.++. ..+++++.++.+++||++.......   ....+.  .......+. .+..++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (342)
T d1yfqa_          86 LIGSPSFQALTNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI  164 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence            998877666553 2 233444455555 5899999999999999986443222   222222  223333444 677899


Q ss_pred             EEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEec-CCCEEEEEecCCcEEEEeCCCCCceeeeeccc-cC
Q 001366          973 TASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLST-ADGYIACGSESNEVYAYHRSLPMPITSYKFGS-ID 1050 (1092)
Q Consensus       973 Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~-~~ 1050 (1092)
                      +++.|+.|++||++....     .........+...+.++.+.+ ++..+++++.||.+.+|+.............. ..
T Consensus       165 ~~~~d~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         165 VGMNNSQVQWFRLPLCED-----DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             EEESTTEEEEEESSCCTT-----CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             eecCCCcEEEEecccCcc-----cceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            999999999999985432     122233344555666666655 57799999999999999876543322211000 00


Q ss_pred             CCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1051 PISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1051 ~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .........+|...|++|+|+|++.+||||+.||.|+|||+
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEEC
Confidence            11112233567778999999999999999999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=2.4e-24  Score=240.90  Aligned_cols=308  Identities=12%  Similarity=0.004  Sum_probs=227.5

Q ss_pred             ccCC-CCcE-EeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCCCCc
Q 001366          741 IQNP-TDRL-GAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSK--KIKIFEFNALFNDSV  816 (1092)
Q Consensus       741 ~~~~-~~~l-~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~--~I~Iwd~~~~~~~~~  816 (1092)
                      +++| ++.+ ....++.+.+|+.....+..      + .|...|.+++|+|||++|++++.+.  .|++||+...     
T Consensus         9 ~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~------~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~-----   76 (360)
T d1k32a3           9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLK------V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-----   76 (360)
T ss_dssp             EEEECGGGCEEEEETTEEEEECTTSSBEEE------C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC-----
T ss_pred             cccCCCCCEEEEEECCeEEEEECCCCcEEE------c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC-----
Confidence            4566 5544 33467889999886654432      2 6889999999999999999877664  7999998752     


Q ss_pred             ccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEe-----
Q 001366          817 DVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGS-----  891 (1092)
Q Consensus       817 ~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs-----  891 (1092)
                         .......|...|.+++|+|+ +++|++++.++.+++|++.+++....+..|...+.+++|+| ++.+|+.++     
T Consensus        77 ---~~~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~  151 (360)
T d1k32a3          77 ---KAEKFEENLGNVFAMGVDRN-GKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHG  151 (360)
T ss_dssp             ---CEEECCCCCCSEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSS
T ss_pred             ---cEEEeeCCCceEEeeeeccc-ccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeecccccc
Confidence               12234568899999999998 99999999999999999999999999999999999999999 888888654     


Q ss_pred             -----CCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc------eEEecCCCCCe
Q 001366          892 -----DDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP------WCVLAGHEKAV  960 (1092)
Q Consensus       892 -----~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~------~~~l~~H~~~V  960 (1092)
                           .++.+++||+.+++......+...+.+++|+|+|. .|++++.++.+.+||.......      ...+..|...+
T Consensus       152 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  230 (360)
T d1k32a3         152 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP  230 (360)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCC
T ss_pred             ceeeccccceeeeccccCceeeecccccccccccccCCCC-EEEEEeCCCceEcccccccceeeccccceEEEecccCcc
Confidence                 34569999999988777777788899999999995 8899999999999997654311      12223344444


Q ss_pred             EEEEEc-CCCEEEEEECCC---eEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC---EEEEEecCCcEEEE
Q 001366          961 SYVKFL-DSGTLVTASTDN---KLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG---YIACGSESNEVYAY 1033 (1092)
Q Consensus       961 ~~v~fs-~~~~L~Sgs~Dg---~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~---~lasgs~Dg~I~Iw 1033 (1092)
                      ..+.|+ ++..++++..+.   ..++|.+..       .......+..+...+..+.+.+.+.   ++++++.++.|++|
T Consensus       231 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  303 (360)
T d1k32a3         231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINV-------DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY  303 (360)
T ss_dssp             CGGGCCCGGGSCCCCCCCCTTGGGGCEECSC-------CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred             ccceECCCcCcccccceeecccccceeeccc-------CcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEE
Confidence            444454 233344333322   123444431       1122334455556666666665543   67889999999999


Q ss_pred             eCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1034 HRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1034 d~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |...++...                  |...|.+++|+|||++|++++.||.|++|++
T Consensus       304 d~~~~~~~~------------------~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~  343 (360)
T d1k32a3         304 DVKTRKVTE------------------VKNNLTDLRLSADRKTVMVRKDDGKIYTFPL  343 (360)
T ss_dssp             ETTTCCEEE------------------EEEEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred             ECCCCeEEE------------------ecCCcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence            987764321                  2345899999999999999999999999986

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=4.3e-22  Score=231.47  Aligned_cols=328  Identities=12%  Similarity=0.071  Sum_probs=223.8

Q ss_pred             EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecC
Q 001366          748 LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSN  827 (1092)
Q Consensus       748 l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h  827 (1092)
                      +++.-|+++++|+....++...+.     .| ..+.+++|+|||++|++++.|++|++||+.+.....  ........+|
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~-----~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~--~~~i~~~~~~  107 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVID-----TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK--VAEIKIGIEA  107 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEE-----CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--EEEEECCSEE
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEe-----CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE--EEEEeCCCCC
Confidence            345678999999999988877665     33 358999999999999999999999999997632110  0000111234


Q ss_pred             CCCeEEEEEecCCCCE-EEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCC-EEEEEeCCCc----------
Q 001366          828 RSKLSCVCWNNYIKNY-LASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPT-KLASGSDDCS----------  895 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~-LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~-~laSgs~Dg~----------  895 (1092)
                      ...+.+++|+|+ +++ ++++..++++++||..++.++..+..|...+..+.+.+ ++. ..++++.|+.          
T Consensus       108 ~~~~~s~~~spD-G~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         108 RSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP-EPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             EEEEECCSTTCT-TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES-CCCEEEEEECSSSSEEEEEETTTT
T ss_pred             cceEEeeeecCC-CCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecC-CCceeEEEECCCCCEEEEecCCCC
Confidence            555667778888 555 46667899999999999999888877766555455544 222 2334444444          


Q ss_pred             -EEEEecCCCce--eeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEE-ecCCCCCeEEEEEc-CCC-
Q 001366          896 -VKLWNINEKNS--LATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV-LAGHEKAVSYVKFL-DSG-  969 (1092)
Q Consensus       896 -I~iWDl~~~~~--l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~-l~~H~~~V~~v~fs-~~~-  969 (1092)
                       +.+++......  +..+.+...+..+.|+|++..++++...+..+.++|..+.+..... ...+......+.+. ++. 
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  265 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCC
Confidence             44444444332  2334466778999999999867777778889999999987642222 12223333444443 332 


Q ss_pred             EE--EEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEE-------EEecCCcEEEEeCCCCCc
Q 001366          970 TL--VTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIA-------CGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       970 ~L--~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~la-------sgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                      .+  ++.+.|+.+.+|+...... ......+..++.+|...+++++|+|++++|+       +++.|++|+|||+.+++.
T Consensus       266 ~~~~~~~~~d~~v~~~~~~~~~~-~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~  344 (426)
T d1hzua2         266 PVWSTSHLGDGSISLIGTDPKNH-PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA  344 (426)
T ss_dssp             EEEEEECTTTCEEEEEECCTTTC-TTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             ceEEeccCCCceEEEeecccccc-ccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCc
Confidence            22  2345688999999874321 1124567889999999999999999999999       456789999999998887


Q ss_pred             eeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEE-EE----ecCCeEEEEEc
Q 001366         1041 ITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVV-AA----NSSGCIKVLQM 1091 (1092)
Q Consensus      1041 i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~La-sg----s~DG~V~vW~l 1091 (1092)
                      +.++.     ++........|...|.+++|+|||+.++ ++    +.+|.|+|||.
T Consensus       345 ~~~~~-----~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         345 KYQVL-----PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             CCEEE-----CHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred             CeEEe-----ccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence            65542     1111112345667899999999998764 32    35789999984

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=2.8e-19  Score=194.06  Aligned_cols=261  Identities=10%  Similarity=0.053  Sum_probs=200.5

Q ss_pred             EEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEE-EEEECCCcEEEEECCCCceEEEeeccCc
Q 001366          794 FAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYL-ASADYDGVVKLWDACTGQTVSHYIEHEK  872 (1092)
Q Consensus       794 latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~L-aSgs~DgtV~IWD~~tg~~i~~l~~h~~  872 (1092)
                      +++++.|++|.|||+.+..        ....+.....+..++|+|+ +++| ++++.++.|++||+.+++.+..+..|..
T Consensus         5 yV~~~~~~~v~v~D~~t~~--------~~~~i~~g~~p~~va~spd-G~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~   75 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNK--------VTATIPVGSNPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVPAGSS   75 (301)
T ss_dssp             EEEETTTTEEEEEETTTTE--------EEEEEECSSSEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEECCCCEEEEEECCCCe--------EEEEEECCCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCceeeeeecccc
Confidence            4567789999999987621        1122233456789999998 6655 6777899999999999999999887664


Q ss_pred             cEEEEEEecCCCC-EEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceE
Q 001366          873 RAWSVDFSQVHPT-KLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC  951 (1092)
Q Consensus       873 ~V~sv~fsp~~~~-~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~  951 (1092)
                       +..+.|++ ++. .++++..++.+.+||..+++....+.....+.++.|+|++..+++++..++.+.+|+..+... ..
T Consensus        76 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~-~~  152 (301)
T d1l0qa2          76 -PQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-IN  152 (301)
T ss_dssp             -EEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EE
T ss_pred             -cccccccc-ccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccce-ee
Confidence             67999999 555 566777888999999999999999998889999999999987778888899999999988753 33


Q ss_pred             EecCCCCCeEEEEEc-CCCEEEEEECC-CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEe---c
Q 001366          952 VLAGHEKAVSYVKFL-DSGTLVTASTD-NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGS---E 1026 (1092)
Q Consensus       952 ~l~~H~~~V~~v~fs-~~~~L~Sgs~D-g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs---~ 1026 (1092)
                      .+. +...+..+.++ ++..+++++.+ +.+.+|+...        ......+. +......++|++++..++.++   .
T Consensus       153 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~  222 (301)
T d1l0qa2         153 TVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT--------NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKY  222 (301)
T ss_dssp             EEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--------TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             ecc-cCCCceEEEeeccccceeeecccccccccccccc--------eeeeeccc-ccCCcceeeccccccccccccccce
Confidence            333 34567888888 56677766655 5677777662        33334443 345577899999999776554   3


Q ss_pred             CCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEE-EEEecCCeEEEEEc
Q 001366         1027 SNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMV-VAANSSGCIKVLQM 1091 (1092)
Q Consensus      1027 Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~L-asgs~DG~V~vW~l 1091 (1092)
                      ++.|++||..+++.+..+..               ...+.+++|+|||++| ++++.||.|+|||+
T Consensus       223 ~~~v~v~D~~t~~~~~~~~~---------------~~~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         223 FNTVSMIDTGTNKITARIPV---------------GPDPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             CCEEEEEETTTTEEEEEEEC---------------CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             eeeeeeeecCCCeEEEEEcC---------------CCCEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence            46899999999887776642               2358999999999977 57778999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=4.1e-19  Score=192.80  Aligned_cols=271  Identities=11%  Similarity=0.028  Sum_probs=206.7

Q ss_pred             eEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCCCCcccccceeeecCC
Q 001366          750 AFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHF-AAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNR  828 (1092)
Q Consensus       750 ~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~l-atgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~  828 (1092)
                      ...|+++.+|+..+.++...+..      ...+..++|+|||++| ++++.+++|++||+.+..        ........
T Consensus         8 ~~~~~~v~v~D~~t~~~~~~i~~------g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~--------~~~~~~~~   73 (301)
T d1l0qa2           8 NSESDNISVIDVTSNKVTATIPV------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--------VIATVPAG   73 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--------EEEEEECS
T ss_pred             ECCCCEEEEEECCCCeEEEEEEC------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--------eeeeeecc
Confidence            45678999999999888776653      2357889999999987 466688999999987521        11222234


Q ss_pred             CCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCE-EEEEeCCCcEEEEecCCCcee
Q 001366          829 SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTK-LASGSDDCSVKLWNINEKNSL  907 (1092)
Q Consensus       829 ~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~-laSgs~Dg~I~iWDl~~~~~l  907 (1092)
                      ..+..++|++++...++++..++.+.+|+..+++....+..+ ..+.++.|+| ++.. +++++.++.+.+|+..+...+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~  151 (301)
T d1l0qa2          74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVI  151 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeec-CCCeeeeeeccccceeeeecccccee
Confidence            467899999985556677778899999999999888888754 4567899999 5555 566777899999999999999


Q ss_pred             eeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEE---CCCeEEEE
Q 001366          908 ATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTAS---TDNKLKLW  983 (1092)
Q Consensus       908 ~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs---~Dg~I~vW  983 (1092)
                      ..+.....+.+++++|++..+++++..++.+.+|+...... ..... +...+..+.|+ ++..++.++   .+++|.+|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~  229 (301)
T d1l0qa2         152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (301)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             eecccCCCceEEEeeccccceeeecccccccccccccceee-eeccc-ccCCcceeeccccccccccccccceeeeeeee
Confidence            99998888999999999975555555667788888776542 33333 34456778887 666665443   34789999


Q ss_pred             EcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEE-EEEecCCcEEEEeCCCCCceeeeecc
Q 001366          984 DLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYI-ACGSESNEVYAYHRSLPMPITSYKFG 1047 (1092)
Q Consensus       984 Dl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~I~Iwd~~~~~~i~~~~~~ 1047 (1092)
                      |+.        ++..+..+..+ ..++.++|+|||++| ++++.|+.|+|||..+++.+.++..|
T Consensus       230 D~~--------t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg  285 (301)
T d1l0qa2         230 DTG--------TNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG  285 (301)
T ss_dssp             ETT--------TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             ecC--------CCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCC
Confidence            998        34556666543 467999999999976 67788999999999999999888754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.7e-19  Score=210.29  Aligned_cols=323  Identities=12%  Similarity=0.048  Sum_probs=214.5

Q ss_pred             EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecC
Q 001366          748 LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSN  827 (1092)
Q Consensus       748 l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h  827 (1092)
                      ++.+.|+++.+|+...+++...+..     | ..+..++|+|||+++++++.|++|++||+.+......  ........|
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~~-----g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~--~~i~~~~~~  107 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLDT-----G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKIGSEA  107 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEEC-----S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEECCSEE
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeC-----C-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE--EEEecCCCC
Confidence            4667889999999999988887763     3 3589999999999999999999999999875321110  000011223


Q ss_pred             CCCeEEEEEecCCCCE-EEEEECCCcEEEEECCCCceEEEeecc-----------CccEEEEEEecCCCCEEEEEeCCCc
Q 001366          828 RSKLSCVCWNNYIKNY-LASADYDGVVKLWDACTGQTVSHYIEH-----------EKRAWSVDFSQVHPTKLASGSDDCS  895 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~-LaSgs~DgtV~IWD~~tg~~i~~l~~h-----------~~~V~sv~fsp~~~~~laSgs~Dg~  895 (1092)
                      ...+.+..|+|| +++ +++++.+++|+|||..+++.+..+..|           ......+.++|....++++.+.++.
T Consensus       108 ~~~~~s~~~SpD-G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~  186 (432)
T d1qksa2         108 RSIETSKMEGWE-DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  186 (432)
T ss_dssp             EEEEECCSTTCT-TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CCeEEecccCCC-CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence            444555667788 555 588899999999999999988877654           3445678889843345677788899


Q ss_pred             EEEEecCCCcee--eeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEec----CCCCCeEEEEEcCCC
Q 001366          896 VKLWNINEKNSL--ATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA----GHEKAVSYVKFLDSG  969 (1092)
Q Consensus       896 I~iWDl~~~~~l--~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~----~H~~~V~~v~fs~~~  969 (1092)
                      |.+||..+.+..  ..+.....+.+++|+|+|..+++++..++.+.++|..+.+.......    .|........+...+
T Consensus       187 i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g  266 (432)
T d1qksa2         187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG  266 (432)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred             EEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCC
Confidence            999999887754  45566778899999999976666666778999999987654222211    234444455555444


Q ss_pred             EEEEEE--CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCc-------
Q 001366          970 TLVTAS--TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMP------- 1040 (1092)
Q Consensus       970 ~L~Sgs--~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~------- 1040 (1092)
                      .+....  .|+.|.+|+.....            ...|...+....++|++..+++++.++.+++|......+       
T Consensus       267 ~~~~~~~lg~~~v~~~~~~~~~------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~s  334 (432)
T d1qksa2         267 PVWATSHMGDDSVALIGTDPEG------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS  334 (432)
T ss_dssp             EEEEEEBSSSSEEEEEECCTTT------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC
T ss_pred             ceecccccCCceEEeccccccc------------ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeE
Confidence            443333  37889999876321            123455566666777766667777677777775433211       


Q ss_pred             eeeee-----ccccCCCC------CccccCCCCCCEEEEEEeCCCCEEEEEe-----cCCeEEEEEc
Q 001366         1041 ITSYK-----FGSIDPIS------GKETDDDNGLFVSSVCWRRRSDMVVAAN-----SSGCIKVLQM 1091 (1092)
Q Consensus      1041 i~~~~-----~~~~~~i~------~~~~~~~h~~~V~sva~spd~~~Lasgs-----~DG~V~vW~l 1091 (1092)
                      +....     .++.+...      .......|...|.+++|+|||+.|+.+.     .+|.|+|||-
T Consensus       335 v~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         335 VAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             EEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             EEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence            11000     00000000      0012234666799999999999886553     4688999983

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=4.8e-21  Score=213.68  Aligned_cols=275  Identities=11%  Similarity=0.009  Sum_probs=199.6

Q ss_pred             EEEcC-CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC--cEEEEECCCC
Q 001366          785 ISFDR-DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG--VVKLWDACTG  861 (1092)
Q Consensus       785 l~fsp-dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg--tV~IWD~~tg  861 (1092)
                      -.||| ||+++|+++ ++.|+|||....         ......|...|.+++|+|+ +++|++++.|.  .|++||+.++
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~---------~~~~~~~~~~v~~~~~spD-g~~l~~~~~~~g~~v~v~d~~~~   76 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGT---------YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG   76 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSS---------BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCC---------cEEEccCCCCEEEEEECCC-CCEEEEEEcCCCCEEEEEECCCC
Confidence            57999 999999987 579999998642         1233468999999999998 77777666553  7999999877


Q ss_pred             ceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEE-------
Q 001366          862 QTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGS-------  933 (1092)
Q Consensus       862 ~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs-------  933 (1092)
                      +.. .+..|...|.+++|+| +++.|++++.++.+++|++.+++....+. +...+.+++|+|+|. +|+++.       
T Consensus        77 ~~~-~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~la~~~~~~~~~~  153 (360)
T d1k32a3          77 KAE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR-FIAYGFPLKHGET  153 (360)
T ss_dssp             CEE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC-EEEEEEEECSSTT
T ss_pred             cEE-EeeCCCceEEeeeecc-cccccceeccccccccccccccceeeeeecccccccchhhcccee-eeeeeccccccce
Confidence            654 5678999999999999 89999999999999999999999888877 456789999999996 565443       


Q ss_pred             ---CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCe
Q 001366          934 ---ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEK 1009 (1092)
Q Consensus       934 ---~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V 1009 (1092)
                         .++.+++||+.+.+.  ..+..|...+..+.|+ +++.|++++.|+.+++||......... .......+..|...+
T Consensus       154 ~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~  230 (360)
T d1k32a3         154 DGYVMQAIHVYDMEGRKI--FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE-VVSKPFVIPLIPGSP  230 (360)
T ss_dssp             CSCCEEEEEEEETTTTEE--EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC-SCBEEEEEESSTTCC
T ss_pred             eeccccceeeeccccCce--eeecccccccccccccCCCCEEEEEeCCCceEcccccccceeec-cccceEEEecccCcc
Confidence               345799999987643  4556677888999998 778899999999999999874332111 122334455566666


Q ss_pred             EEEEEecCCCEEEEEecCCc-----EEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCC---CCEEEEEe
Q 001366         1010 NFVGLSTADGYIACGSESNE-----VYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRR---SDMVVAAN 1081 (1092)
Q Consensus      1010 ~~v~~spdg~~lasgs~Dg~-----I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd---~~~Lasgs 1081 (1092)
                      ..+.|++++..++++..+..     +..++...+....               ...+...+..+.+.+.   +.++++++
T Consensus       231 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (360)
T d1k32a3         231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM---------------IIPLESSILIYSVPVHGEFAAYYQGAP  295 (360)
T ss_dssp             CGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE---------------EEECSSEEEEEECCCCCSHHHHHHCCC
T ss_pred             ccceECCCcCcccccceeecccccceeecccCcCceeE---------------eeecCCCceEEEEEecCCCeeEEEecC
Confidence            66778888777666554321     2222222222111               1112333444554444   44678888


Q ss_pred             cCCeEEEEEc
Q 001366         1082 SSGCIKVLQM 1091 (1092)
Q Consensus      1082 ~DG~V~vW~l 1091 (1092)
                      .++.|++|++
T Consensus       296 ~~~~i~~~d~  305 (360)
T d1k32a3         296 EKGVLLKYDV  305 (360)
T ss_dssp             CCEEEEEEET
T ss_pred             CCCEEEEEEC
Confidence            9999999985

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=1.8e-18  Score=190.39  Aligned_cols=278  Identities=11%  Similarity=-0.015  Sum_probs=198.6

Q ss_pred             EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCCCCcccccceeeec
Q 001366          748 LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHF-AAAGVSKKIKIFEFNALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       748 l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~l-atgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~  826 (1092)
                      +++..|+.+.+|+..+.++...+.   +..+...+.+++|+|||+++ ++++.++.|.+||+.+...  ...........
T Consensus         5 vt~~~d~~v~v~D~~s~~~~~~i~---~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~   79 (337)
T d1pbyb_           5 LAPARPDKLVVIDTEKMAVDKVIT---IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEE   79 (337)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEE---CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTE
T ss_pred             EEEcCCCEEEEEECCCCeEEEEEE---CCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecCCCcc
Confidence            567889999999999988877665   33455667889999999987 5667889999999876221  00000000001


Q ss_pred             CCCCeEEEEEecCCCCEEEEEE------------CCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCC
Q 001366          827 NRSKLSCVCWNNYIKNYLASAD------------YDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC  894 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs------------~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg  894 (1092)
                      +...+..++|+|+ +.++++++            .++.+.+||..+++....+.. ...+.+++|+| ++..+++++.+ 
T Consensus        80 ~~~~~~~v~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~-  155 (337)
T d1pbyb_          80 RVKSLFGAALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGRD-  155 (337)
T ss_dssp             EEECTTCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESSS-
T ss_pred             cccceeeEEEcCC-CcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcCC-
Confidence            1233557899998 77776665            467899999999998888874 45578999999 88888888654 


Q ss_pred             cEEEEecCCCceeeeEecCCceEEEEEccCCCe-----------------------EEEEEECCCeEEEEEcCCCCcceE
Q 001366          895 SVKLWNINEKNSLATIKNIANVCCVQFSAHSSH-----------------------LLAFGSADYRTYCYDLRNARAPWC  951 (1092)
Q Consensus       895 ~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~-----------------------~latgs~Dg~I~vwDlr~~~~~~~  951 (1092)
                       +.+||..+++....+..........+.|++..                       ....+..++.+.+||+.++.....
T Consensus       156 -~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T d1pbyb_         156 -LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             -EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             -cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence             78899999988877764322222222222210                       011122345689999988765555


Q ss_pred             EecCCCCCeEEEEEcCC-CEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcE
Q 001366          952 VLAGHEKAVSYVKFLDS-GTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEV 1030 (1092)
Q Consensus       952 ~l~~H~~~V~~v~fs~~-~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I 1030 (1092)
                      .+..|...+..+.+++. .+++++  ++.|++||+.        +...+..+. +...+.+++|+|||++|++|+.|+.|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~--------~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i  303 (337)
T d1pbyb_         235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE--------KNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT--------TTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred             EecCCCcceEEEEecccceEEEEc--cccEEEEECC--------CCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            56677888888888844 444443  6899999998        345566554 55678999999999999999999999


Q ss_pred             EEEeCCCCCceeeeec
Q 001366         1031 YAYHRSLPMPITSYKF 1046 (1092)
Q Consensus      1031 ~Iwd~~~~~~i~~~~~ 1046 (1092)
                      +|||..+.+.+.+++.
T Consensus       304 ~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         304 AAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEETTTCCEEEEEEC
T ss_pred             EEEECCCCcEEEEEEC
Confidence            9999999999988864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=2.7e-18  Score=188.89  Aligned_cols=265  Identities=11%  Similarity=-0.022  Sum_probs=191.6

Q ss_pred             CEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEE-EEEECCCcEEEEECCCCceEEEeecc
Q 001366          792 DHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYL-ASADYDGVVKLWDACTGQTVSHYIEH  870 (1092)
Q Consensus       792 ~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~L-aSgs~DgtV~IWD~~tg~~i~~l~~h  870 (1092)
                      +||++++.|++|+|||+.+..     .........+...+.+++|+|+ ++++ ++++.|+.|.+||+.+++.+..+..+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~-----~~~~i~~~~~~~~~~~i~~spD-g~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA-----VDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE-----EEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCe-----EEEEEECCCCCCCccEEEECCC-CCEEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence            589999999999999997621     1111111123455789999998 6665 67788999999999999998888755


Q ss_pred             C-----ccEEEEEEecCCCCEEEEEe------------CCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEE
Q 001366          871 E-----KRAWSVDFSQVHPTKLASGS------------DDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGS  933 (1092)
Q Consensus       871 ~-----~~V~sv~fsp~~~~~laSgs------------~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs  933 (1092)
                      .     ..+..++|+| +++.+++++            .+..+.+||..++..+..+.....+.+++|+|++. ++++++
T Consensus        76 ~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~  153 (337)
T d1pbyb_          76 TPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS-KLYGLG  153 (337)
T ss_dssp             BTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS-CEEEES
T ss_pred             CCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCC-EEEEEc
Confidence            3     3456899999 888887765            46789999999999999999888899999999996 566665


Q ss_pred             CCCeEEEEEcCCCCcceEEecCCCCCe------EEEEE------------------cCCCEEEEEECCCeEEEEEcCCCC
Q 001366          934 ADYRTYCYDLRNARAPWCVLAGHEKAV------SYVKF------------------LDSGTLVTASTDNKLKLWDLKRTS  989 (1092)
Q Consensus       934 ~Dg~I~vwDlr~~~~~~~~l~~H~~~V------~~v~f------------------s~~~~L~Sgs~Dg~I~vWDl~~~~  989 (1092)
                        +.+.+||..+.+. ...+..+....      ....+                  .+...+..++.++.+.+||..+..
T Consensus       154 --~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (337)
T d1pbyb_         154 --RDLHVMDPEAGTL-VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             --SSEEEEETTTTEE-EEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             --CCcceeeeecCcE-EEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence              4477899987653 22332221100      00000                  011122223345568899987431


Q ss_pred             CCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEE
Q 001366          990 HTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVC 1069 (1092)
Q Consensus       990 ~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva 1069 (1092)
                             .....+..+...+..++++|++.+++++  ++.|++||..+++.+..+..               ...+.+++
T Consensus       231 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~---------------~~~~~~~~  286 (337)
T d1pbyb_         231 -------MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---------------PHSYYSVN  286 (337)
T ss_dssp             -------EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---------------SSCCCEEE
T ss_pred             -------EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC---------------CCCEEEEE
Confidence                   2233455677788889999999988766  47899999999988877652               34578999


Q ss_pred             EeCCCCEEEEEecCCeEEEEEc
Q 001366         1070 WRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1070 ~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      |+|||++|++++.||.|+|||.
T Consensus       287 ~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         287 VSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             ECTTSCEEEEESBSSEEEEEET
T ss_pred             ECCCCCEEEEEeCCCcEEEEEC
Confidence            9999999999999999999985

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.78  E-value=7.6e-18  Score=185.98  Aligned_cols=270  Identities=11%  Similarity=0.041  Sum_probs=193.0

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCE-EEEEECCCcEEEEECCCCce
Q 001366          785 ISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNY-LASADYDGVVKLWDACTGQT  863 (1092)
Q Consensus       785 l~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-LaSgs~DgtV~IWD~~tg~~  863 (1092)
                      ++|+++++||++++.|++|.|||+.+..      ........+...+.+++|+|| +++ +++++.++.|++||+.+++.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~------~~~t~~~~~~~~p~~l~~spD-G~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDT------VYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTE------EEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCC------EEEEEEcCCCCCcceEEECCC-CCEEEEEECCCCcEEEEeCccCee
Confidence            4789999999999999999999997621      111122345667889999998 555 46777899999999999998


Q ss_pred             EEEeeccC------ccEEEEEEecCCCCEEEEEe------------CCCcEEEEecCCCceeeeEe---cCCceEEEEEc
Q 001366          864 VSHYIEHE------KRAWSVDFSQVHPTKLASGS------------DDCSVKLWNINEKNSLATIK---NIANVCCVQFS  922 (1092)
Q Consensus       864 i~~l~~h~------~~V~sv~fsp~~~~~laSgs------------~Dg~I~iWDl~~~~~l~~l~---~~~~V~sl~fs  922 (1092)
                      +..+....      ..+..++|+| +++.+++++            .++.+.+||..+++....+.   ....+..+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA  153 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred             eeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEec
Confidence            87765322      3457899999 888877664            47889999999887655443   34567777787


Q ss_pred             cCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc---------------------------CCCEEEEEE
Q 001366          923 AHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL---------------------------DSGTLVTAS  975 (1092)
Q Consensus       923 p~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs---------------------------~~~~L~Sgs  975 (1092)
                      +++. ++++   ++.+.+||+.+.+. ...+..+.. +..+.++                           ....++++.
T Consensus       154 ~~~~-~~~~---~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
T d1jmxb_         154 DDGS-LYVA---GPDIYKMDVKTGKY-TVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD  227 (346)
T ss_dssp             TTSC-EEEE---SSSEEEECTTTCCE-EEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred             CCCE-EEEe---CCcceEEEccCCCE-EEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeecc
Confidence            7774 4443   35688999887653 333332211 1111111                           222344556


Q ss_pred             CCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCc
Q 001366          976 TDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGK 1055 (1092)
Q Consensus       976 ~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~ 1055 (1092)
                      .++.+.+||+.+.       ......+..|...+..+.+++++.++++++. +.|++||..+++.+..+..         
T Consensus       228 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~---------  290 (346)
T d1jmxb_         228 LLYGYLSVDLKTG-------KTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL---------  290 (346)
T ss_dssp             EEEEEEEEETTTC-------CEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC---------
T ss_pred             CCceEEEEECCCC-------ceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcC---------
Confidence            6778899998742       2233455678888999999999988887765 5799999999888776652         


Q ss_pred             cccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1056 ETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1056 ~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                            ...+.+++|+|||++|++++.||.|+|||+
T Consensus       291 ------~~~~~~va~s~DG~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         291 ------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             ------SSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             ------CCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence                  235889999999999999999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=7.8e-17  Score=186.53  Aligned_cols=276  Identities=9%  Similarity=-0.034  Sum_probs=188.7

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEE--e-
Q 001366          791 EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSH--Y-  867 (1092)
Q Consensus       791 g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~--l-  867 (1092)
                      +-++++++.|++|+|||+.+..        ....+.....+..++|+|| +++|++++.|++|++||+.+++....  + 
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~--------~~~~l~~g~~~~~vafSPD-Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKK--------IVKVIDTGYAVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCS--------EEEEEECCSSEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCc--------EEEEEeCCCCeeEEEECCC-CCEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            3366888899999999987621        1122223356899999998 89999999999999999999874432  2 


Q ss_pred             --eccCccEEEEEEecCCCCEE-EEEeCCCcEEEEecCCCceeeeEec------------CCceEEEEEccCCCeEEEEE
Q 001366          868 --IEHEKRAWSVDFSQVHPTKL-ASGSDDCSVKLWNINEKNSLATIKN------------IANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       868 --~~h~~~V~sv~fsp~~~~~l-aSgs~Dg~I~iWDl~~~~~l~~l~~------------~~~V~sl~fsp~~~~~latg  932 (1092)
                        .+|...+.+++|+| +++++ +++..++++++||..++.++..+..            ......+.+++++..++.+.
T Consensus       103 ~~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~  181 (426)
T d1hzua2         103 IGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  181 (426)
T ss_dssp             CCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             CCCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec
Confidence              35667778888899 78775 5566899999999999988766642            23355677777776555555


Q ss_pred             ECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEE-CCCeEEEEEcCCCCCCCCCCCceeEEEc--CCCCC
Q 001366          933 SADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTAS-TDNKLKLWDLKRTSHTGPSTNACSLTFS--GHTNE 1008 (1092)
Q Consensus       933 s~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs-~Dg~I~vWDl~~~~~~~~~~~~~~~~l~--~h~~~ 1008 (1092)
                      ...+.+.+++..+.........++...+..+.|+ ++++++++. .++.+.+||...        +..+....  .+...
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  253 (426)
T d1hzua2         182 KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD--------RRLSALVDVGKTPHP  253 (426)
T ss_dssp             TTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT--------TEEEEEEECSSCCCC
T ss_pred             CCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc--------ccEEEEeccCCcccc
Confidence            5667777777776655444555778889999998 566665554 667799999984        33333333  22333


Q ss_pred             eEEEEEecCCC-EE--EEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEE------
Q 001366         1009 KNFVGLSTADG-YI--ACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVA------ 1079 (1092)
Q Consensus      1009 V~~v~~spdg~-~l--asgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Las------ 1079 (1092)
                      .....+...+. .+  ++.+.|+.+.+|+.........       .-.......+|...|.+++|+||+.+|++      
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~-------~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~  326 (426)
T d1hzua2         254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY-------AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP  326 (426)
T ss_dssp             SCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTT-------BTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCS
T ss_pred             cceeeeecCCCCceEEeccCCCceEEEeeccccccccc-------cceEeEEEecCCCceeEEEcCCCCceEEEeecCCC
Confidence            33444444332 22  2344678888887654321000       00011234678888999999999999994      


Q ss_pred             -EecCCeEEEEEc
Q 001366         1080 -ANSSGCIKVLQM 1091 (1092)
Q Consensus      1080 -gs~DG~V~vW~l 1091 (1092)
                       ++.|++|+||++
T Consensus       327 s~~~~~tv~vwd~  339 (426)
T d1hzua2         327 DARISQSVAVFDL  339 (426)
T ss_dssp             SHHHHTCEEEEET
T ss_pred             CcccCCEEEEEEC
Confidence             556889999995

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=8e-16  Score=178.78  Aligned_cols=283  Identities=13%  Similarity=-0.015  Sum_probs=187.4

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCce--EEEe
Q 001366          790 DEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQT--VSHY  867 (1092)
Q Consensus       790 dg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~--i~~l  867 (1092)
                      +.-++++.+.|++|.|||..+..       .......+ ..+..++|+|| ++++++++.|++|++||+.+++.  +..+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~-------v~~~~~~g-~~~~~v~fSpD-G~~l~~~s~dg~v~~~d~~t~~~~~~~~i  101 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYE-------IKTVLDTG-YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEI  101 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCC-------EEEEEECS-SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCc-------EEEEEeCC-CCeeEEEECCC-CCEEEEEcCCCCEEEEEeeCCCceEEEEE
Confidence            33356899999999999987621       11122223 46899999998 99999999999999999988763  3333


Q ss_pred             ---eccCccEEEEEEecCCCCE-EEEEeCCCcEEEEecCCCceeeeEe------------cCCceEEEEEccCCCeEEEE
Q 001366          868 ---IEHEKRAWSVDFSQVHPTK-LASGSDDCSVKLWNINEKNSLATIK------------NIANVCCVQFSAHSSHLLAF  931 (1092)
Q Consensus       868 ---~~h~~~V~sv~fsp~~~~~-laSgs~Dg~I~iWDl~~~~~l~~l~------------~~~~V~sl~fsp~~~~~lat  931 (1092)
                         .+|...+.++.|+| |+++ +++++.+++|++||..+++++..+.            .......+.++|++..++++
T Consensus       102 ~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs  180 (432)
T d1qksa2         102 KIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  180 (432)
T ss_dssp             ECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             ecCCCCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE
Confidence               35666777788888 7876 4788899999999999999887664            23456789999999877788


Q ss_pred             EECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEE-CCCeEEEEEcCCCCCCCCCCCceeEEEcC-----
Q 001366          932 GSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTAS-TDNKLKLWDLKRTSHTGPSTNACSLTFSG----- 1004 (1092)
Q Consensus       932 gs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs-~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~----- 1004 (1092)
                      ...++.|.+||..+.+......-.+...+..++|+ ++.++++++ .++.+.+||..+        ...+..+..     
T Consensus       181 ~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~--------~~~~~~~~~g~~~~  252 (432)
T d1qksa2         181 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE--------GKLVAIEDTGGQTP  252 (432)
T ss_dssp             ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT--------TEEEEEEECSSSSB
T ss_pred             EccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc--------ceEEEEeccCcccc
Confidence            88899999999987654322223456678999999 566666665 456899999873        233333221     


Q ss_pred             CCCCeEEEEEecCCCEEEEEe-cCCcEEEEeCCCCCc-------eeeeeccccC-------CCCCcc----ccCCCCCCE
Q 001366         1005 HTNEKNFVGLSTADGYIACGS-ESNEVYAYHRSLPMP-------ITSYKFGSID-------PISGKE----TDDDNGLFV 1065 (1092)
Q Consensus      1005 h~~~V~~v~~spdg~~lasgs-~Dg~I~Iwd~~~~~~-------i~~~~~~~~~-------~i~~~~----~~~~h~~~V 1065 (1092)
                      |........+...+...++.. .++.|.+|.......       ...+......       +-..+.    ....|....
T Consensus       253 ~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~  332 (432)
T d1qksa2         253 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEIS  332 (432)
T ss_dssp             CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred             ccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCee
Confidence            333344444444454555443 488999998654321       1111100000       000000    011122223


Q ss_pred             EEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1066 SSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1066 ~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      .++++ ||++.|++++.|+.+++|++
T Consensus       333 ~sv~v-pDg~~la~~s~d~~~k~w~~  357 (432)
T d1qksa2         333 GSVAV-FDIKAMTGDGSDPEFKTLPI  357 (432)
T ss_dssp             TCEEE-EEGGGCCCSSSCCCEEEECH
T ss_pred             eEEEE-EechhhcccccCCceEeccc
Confidence            34554 88888999999999999975

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=9.3e-17  Score=177.06  Aligned_cols=279  Identities=8%  Similarity=-0.034  Sum_probs=193.7

Q ss_pred             EEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCCCCcccccceeeec
Q 001366          748 LGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHF-AAAGVSKKIKIFEFNALFNDSVDVYYPAVEMS  826 (1092)
Q Consensus       748 l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~l-atgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~  826 (1092)
                      +.+..|+.+.+|+..+.++...+..    .|...+.+++|+|||+++ ++++.++.|++||+.+..... ..........
T Consensus        12 ~~~~~~~~v~v~D~~t~~~~~t~~~----~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~-~~~~~~~~~~   86 (346)
T d1jmxb_          12 IVTNYPNNLHVVDVASDTVYKSCVM----PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-HANLSSVPGE   86 (346)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEEC----SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEESCCSTTE
T ss_pred             EEEcCCCEEEEEECCCCCEEEEEEc----CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee-eecccccccc
Confidence            4677899999999999887766542    345567789999999987 555578999999987521100 0000000001


Q ss_pred             CCCCeEEEEEecCCCCEEEEEE------------CCCcEEEEECCCCceEEEeecc--CccEEEEEEecCCCCEEEEEeC
Q 001366          827 NRSKLSCVCWNNYIKNYLASAD------------YDGVVKLWDACTGQTVSHYIEH--EKRAWSVDFSQVHPTKLASGSD  892 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs------------~DgtV~IWD~~tg~~i~~l~~h--~~~V~sv~fsp~~~~~laSgs~  892 (1092)
                      +...+..++|+|+ +.++++++            .++.+.+||..+++....+..+  ...+..+.+++ ++.+++++  
T Consensus        87 ~~~~~~~v~~s~D-G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--  162 (346)
T d1jmxb_          87 VGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSLYVAG--  162 (346)
T ss_dssp             EEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSCEEEES--
T ss_pred             cCCceEEEEEecC-CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-CCEEEEeC--
Confidence            1123567899998 67776654            4788999998887654443322  23455666666 66655542  


Q ss_pred             CCcEEEEecCCCceeeeEecCCceEEEEEccCCCe-------------------------EEEEEECCCeEEEEEcCCCC
Q 001366          893 DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSH-------------------------LLAFGSADYRTYCYDLRNAR  947 (1092)
Q Consensus       893 Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~-------------------------~latgs~Dg~I~vwDlr~~~  947 (1092)
                       +.+.+||+.+++.+..+.....+..+.++|++..                         .++++..++.+.+||+.+..
T Consensus       163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         163 -PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             -SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             -CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence             5689999999998888775554445555554432                         22334455678888888776


Q ss_pred             cceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEec
Q 001366          948 APWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE 1026 (1092)
Q Consensus       948 ~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~ 1026 (1092)
                      ........|...+..+.++ ++.+++.+. ++.|.+||+.        .++.+..+. +...+++++|+|||++|++|+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~--------~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~  311 (346)
T d1jmxb_         242 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLK--------QRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGT  311 (346)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETT--------TTEEEEEEE-CSSCCCEEEECSSSSCEEEESB
T ss_pred             eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECC--------CCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeC
Confidence            6555666788888888887 556666554 5689999998        345555554 4456889999999999999999


Q ss_pred             CCcEEEEeCCCCCceeeeec
Q 001366         1027 SNEVYAYHRSLPMPITSYKF 1046 (1092)
Q Consensus      1027 Dg~I~Iwd~~~~~~i~~~~~ 1046 (1092)
                      |+.|+|||..+++.+.+++.
T Consensus       312 d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         312 FNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             SSEEEEEETTTTEEEEEEEC
T ss_pred             CCcEEEEECccCCEEEEEEC
Confidence            99999999999999988874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=3.3e-15  Score=164.13  Aligned_cols=277  Identities=10%  Similarity=0.086  Sum_probs=187.0

Q ss_pred             EEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEE-EEEECCCcEEEEECCCCceEEEe---e
Q 001366          793 HFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYL-ASADYDGVVKLWDACTGQTVSHY---I  868 (1092)
Q Consensus       793 ~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~L-aSgs~DgtV~IWD~~tg~~i~~l---~  868 (1092)
                      .+++++.|++|+||+++...     .........+...+.+++|+|| +++| +++..|+.|++|++........+   .
T Consensus         6 v~v~~~~~~~I~v~~~~~~~-----~l~~~~~~~~~~~v~~la~spD-G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG-----ALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS-----CEEEEEEEECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCC-----CeEEEEEEcCCCCEeEEEEeCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence            45777899999999987521     1122334567889999999999 7776 45556899999999866433222   2


Q ss_pred             ccCccEEEEEEecCCCCEEEEEeC-CCcEEEEecCCCceeeeEe---cCCceEEEEEccCCCeEEEEEECCCeEEEEEcC
Q 001366          869 EHEKRAWSVDFSQVHPTKLASGSD-DCSVKLWNINEKNSLATIK---NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLR  944 (1092)
Q Consensus       869 ~h~~~V~sv~fsp~~~~~laSgs~-Dg~I~iWDl~~~~~l~~l~---~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr  944 (1092)
                      .+...+..++|+| +++.|++++. +++|.+|+...........   +...+.++.|+|++..++.....+..|.+|+..
T Consensus        80 ~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~  158 (333)
T d1ri6a_          80 ALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  158 (333)
T ss_dssp             ECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEec
Confidence            3445678899999 8888888774 7789999988765544433   556788999999997555555667789999988


Q ss_pred             CCCcceE-----EecCCCCCeEEEEEc-CCCEEE-EEECCCeEEEEEcCCCCCCCCCCCceeEEEc------CCCCCeEE
Q 001366          945 NARAPWC-----VLAGHEKAVSYVKFL-DSGTLV-TASTDNKLKLWDLKRTSHTGPSTNACSLTFS------GHTNEKNF 1011 (1092)
Q Consensus       945 ~~~~~~~-----~l~~H~~~V~~v~fs-~~~~L~-Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~------~h~~~V~~ 1011 (1092)
                      .......     ....+......++|+ ++..++ +....+...+|+.......    ........      ........
T Consensus       159 ~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  234 (333)
T d1ri6a_         159 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN----IECVQTLDMMPENFSDTRWAAD  234 (333)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC----CEEEEEEECSCTTCCSCCCEEE
T ss_pred             cCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccc----eeeeeeeeeeecCCCcccccee
Confidence            6543221     122345567889998 445544 4446678899987632211    11111221      12344667


Q ss_pred             EEEecCCCEEEE-EecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEec-CCeEEEE
Q 001366         1012 VGLSTADGYIAC-GSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANS-SGCIKVL 1089 (1092)
Q Consensus      1012 v~~spdg~~las-gs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs~-DG~V~vW 1089 (1092)
                      +++++++++++. +..++.+.+|+............           ...+...+.+++|+|||++|++++. ++.|+||
T Consensus       235 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~  303 (333)
T d1ri6a_         235 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG-----------FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVY  303 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE-----------EEECSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             EEEecccCceeeecccCCeEEEEEEcCCCCEEEEEE-----------EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEE
Confidence            889999986654 55678999998765543332210           0112345678999999999888765 5899999


Q ss_pred             Ec
Q 001366         1090 QM 1091 (1092)
Q Consensus      1090 ~l 1091 (1092)
                      ++
T Consensus       304 ~i  305 (333)
T d1ri6a_         304 EI  305 (333)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.70  E-value=9.7e-15  Score=163.90  Aligned_cols=280  Identities=10%  Similarity=-0.018  Sum_probs=189.8

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEE---
Q 001366          777 NSANVICSISFDRDEDHFAAAG-----VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD---  848 (1092)
Q Consensus       777 ~h~~~V~sl~fspdg~~latgg-----~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs---  848 (1092)
                      .+..++.+++++|||+.+++..     .++.|.+||..+..       .......+  ....++|+|| +++|++++   
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~-------~~~~~~~~--~~~~~a~SpD-G~~l~va~~~~   87 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS-------ILGHVNGG--FLPNPVAAHS-GSEFALASTSF   87 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCC-------EEEEEeCC--CCccEEEcCC-CCEEEEEeecC
Confidence            5788899999999999887642     34568888876521       11111122  2337899998 77777764   


Q ss_pred             -------CCCcEEEEECCCCceEEEeeccCccE-------EEEEEecCCCCEEEEE--eCCCcEEEEecCCCceeeeEec
Q 001366          849 -------YDGVVKLWDACTGQTVSHYIEHEKRA-------WSVDFSQVHPTKLASG--SDDCSVKLWNINEKNSLATIKN  912 (1092)
Q Consensus       849 -------~DgtV~IWD~~tg~~i~~l~~h~~~V-------~sv~fsp~~~~~laSg--s~Dg~I~iWDl~~~~~l~~l~~  912 (1092)
                             .++.|.+||..+++.+..+..+....       ..+.|++ +++.++..  ..++.+.+|+....+.....  
T Consensus        88 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~--  164 (373)
T d2madh_          88 SRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQLL--  164 (373)
T ss_pred             CcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEEe--
Confidence                   46889999999999988887665544       4467777 56654444  34567888888776654333  


Q ss_pred             CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEe-----cCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCC
Q 001366          913 IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVL-----AGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKR  987 (1092)
Q Consensus       913 ~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l-----~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~  987 (1092)
                       ....++.|+|++...+++.+.|+.+.+||...........     .++......+.+.++..++..+.++.+.+|+...
T Consensus       165 -~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         165 -SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             -ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCC
Confidence             3466889999998888999999999999998765422211     1122233445556666777888899999999885


Q ss_pred             CCCCCCCCCceeEEEcCC----------CCCeEEEEEecCCCE----------EEEEecCCcEEEEeCCCCCceeeeecc
Q 001366          988 TSHTGPSTNACSLTFSGH----------TNEKNFVGLSTADGY----------IACGSESNEVYAYHRSLPMPITSYKFG 1047 (1092)
Q Consensus       988 ~~~~~~~~~~~~~~l~~h----------~~~V~~v~~spdg~~----------lasgs~Dg~I~Iwd~~~~~~i~~~~~~ 1047 (1092)
                      ....      .......+          ......+++++++..          ++....++.|.+||..+++.+..+.  
T Consensus       244 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--  315 (373)
T d2madh_         244 AGAT------NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--  315 (373)
T ss_pred             CeEE------EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--
Confidence            3210      11111111          122334555555544          3455567788999998888777654  


Q ss_pred             ccCCCCCccccCCCCCCEEEEEEeCCCCE--EEEEecCCeEEEEEc
Q 001366         1048 SIDPISGKETDDDNGLFVSSVCWRRRSDM--VVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1048 ~~~~i~~~~~~~~h~~~V~sva~spd~~~--Lasgs~DG~V~vW~l 1091 (1092)
                                   +...+.+++|+|||+.  +++++.|+.|+|||+
T Consensus       316 -------------~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         316 -------------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             -------------CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence                         2446899999999984  468899999999996

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3.1e-14  Score=156.24  Aligned_cols=277  Identities=9%  Similarity=0.100  Sum_probs=183.7

Q ss_pred             EeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCCCCcccccceeeecC
Q 001366          749 GAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAG-VSKKIKIFEFNALFNDSVDVYYPAVEMSN  827 (1092)
Q Consensus       749 ~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg-~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h  827 (1092)
                      +...|+++++|++........+.   ...|...|.+|+|+|||++|++++ .|+.|++|++.....    .........+
T Consensus         9 ~~~~~~~I~v~~~~~~~~l~~~~---~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~----~~~~~~~~~~   81 (333)
T d1ri6a_           9 ASPESQQIHVWNLNHEGALTLTQ---VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG----ALTFAAESAL   81 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEE---EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC----CEEEEEEEEC
T ss_pred             ECCCCCcEEEEEEcCCCCeEEEE---EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC----cEEEeeeccc
Confidence            44578899999986432222222   235678899999999999885555 589999999875211    1111122334


Q ss_pred             CCCeEEEEEecCCCCEEEEEEC-CCcEEEEECCCCceEE--EeeccCccEEEEEEecCCCCEEEEEe-CCCcEEEEecCC
Q 001366          828 RSKLSCVCWNNYIKNYLASADY-DGVVKLWDACTGQTVS--HYIEHEKRAWSVDFSQVHPTKLASGS-DDCSVKLWNINE  903 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~-DgtV~IWD~~tg~~i~--~l~~h~~~V~sv~fsp~~~~~laSgs-~Dg~I~iWDl~~  903 (1092)
                      ...+.+++|+|+ +++|++++. +++|.+|+........  ....+...+.++.++| +++.+++++ .+..|.+|+...
T Consensus        82 ~~~p~~l~~spD-g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          82 PGSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             SSCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCceEEEEcCC-CCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEecc
Confidence            556788999998 788877775 6789999987665433  3345667788999999 777766666 556799999876


Q ss_pred             CceeeeEe-------cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceE---Ee------cCCCCCeEEEEEc-
Q 001366          904 KNSLATIK-------NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC---VL------AGHEKAVSYVKFL-  966 (1092)
Q Consensus       904 ~~~l~~l~-------~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~---~l------~~H~~~V~~v~fs-  966 (1092)
                      ........       .......++|++++...+.+....+...+|+.........   ..      .........+.++ 
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  239 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  239 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec
Confidence            54433221       2355789999999976666666778888998765432211   11      1123456677787 


Q ss_pred             CCCEE-EEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEeC--CCCC
Q 001366          967 DSGTL-VTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGS-ESNEVYAYHR--SLPM 1039 (1092)
Q Consensus       967 ~~~~L-~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~I~Iwd~--~~~~ 1039 (1092)
                      +++++ +++..++.+.+|++.....     .........+...+.+++|+|||++|++++ .++.|.||++  .++.
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         240 DGRHLYACDRTASLITVFSVSEDGS-----VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSC-----CEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             ccCceeeecccCCeEEEEEEcCCCC-----EEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence            55554 4556788999999974321     111222223445677899999999876654 5789999954  4443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=2.5e-14  Score=158.92  Aligned_cols=269  Identities=10%  Similarity=0.005  Sum_probs=178.5

Q ss_pred             EEEcCCCCEEEEEe-----CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEE----------EC
Q 001366          785 ISFDRDEDHFAAAG-----VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASA----------DY  849 (1092)
Q Consensus       785 l~fspdg~~latgg-----~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSg----------s~  849 (1092)
                      .+.+|||+.+++..     .+++|.+||..+..       ......  .+.+..++|+|+ +++|+++          +.
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~-------~~~~~~--~g~~~~~a~SpD-g~~l~v~~~~~~~~~~g~~   76 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR-------VIGMID--GGFLPNPVVADD-GSFIAHASTVFSRIARGER   76 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE-------EEEEEE--ECSSCEEEECTT-SSCEEEEEEEEEETTEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCc-------EEEEEE--CCCCCceEEcCC-CCEEEEEeCCCccccccCC
Confidence            35689999887653     45679999987521       111111  233447999999 6655543          44


Q ss_pred             CCcEEEEECCCCceEEEeeccCc-------cEEEEEEecCCCCEEEEEe--CCCcEEEEecCCCceeeeEecCCc-----
Q 001366          850 DGVVKLWDACTGQTVSHYIEHEK-------RAWSVDFSQVHPTKLASGS--DDCSVKLWNINEKNSLATIKNIAN-----  915 (1092)
Q Consensus       850 DgtV~IWD~~tg~~i~~l~~h~~-------~V~sv~fsp~~~~~laSgs--~Dg~I~iWDl~~~~~l~~l~~~~~-----  915 (1092)
                      |+.|++||..+++.+..+..+..       ....+.|+| ++..++.++  .+..+.+||..+++.+..+.....     
T Consensus        77 d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d2bbkh_          77 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP  155 (355)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEee
Confidence            78999999999998887764332       235688999 778776664  567899999999998888774432     


Q ss_pred             ---eEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCC
Q 001366          916 ---VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHT  991 (1092)
Q Consensus       916 ---V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~  991 (1092)
                         ...+.+++++..+++....++.+.+++.....      ..+...+....+. ++..++.++.++.+.+|++..... 
T Consensus       156 ~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  228 (355)
T d2bbkh_         156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-  228 (355)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-
T ss_pred             cCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-
Confidence               23455555555444444444555555544322      1233444555565 777899999999999999985321 


Q ss_pred             CCCCCceeEEEcCC----------CCCeEEEEEecCCCEEEEEecC----------CcEEEEeCCCCCceeeeeccccCC
Q 001366          992 GPSTNACSLTFSGH----------TNEKNFVGLSTADGYIACGSES----------NEVYAYHRSLPMPITSYKFGSIDP 1051 (1092)
Q Consensus       992 ~~~~~~~~~~l~~h----------~~~V~~v~~spdg~~lasgs~D----------g~I~Iwd~~~~~~i~~~~~~~~~~ 1051 (1092)
                           ..+.....+          ......+++++++..++..+.+          +.|.+||..+++.+..+..     
T Consensus       229 -----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-----  298 (355)
T d2bbkh_         229 -----KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-----  298 (355)
T ss_dssp             -----EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-----
T ss_pred             -----EEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-----
Confidence                 111111111          1223458899999877765543          3699999999988776652     


Q ss_pred             CCCccccCCCCCCEEEEEEeCCCC--EEEEEecCCeEEEEEc
Q 001366         1052 ISGKETDDDNGLFVSSVCWRRRSD--MVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1052 i~~~~~~~~h~~~V~sva~spd~~--~Lasgs~DG~V~vW~l 1091 (1092)
                                ...+.+++|+|||+  ++++++.|+.|+|||+
T Consensus       299 ----------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         299 ----------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             ----------EEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             ----------CCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence                      23588999999997  4566778999999996

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.58  E-value=1.8e-12  Score=144.98  Aligned_cols=263  Identities=9%  Similarity=-0.065  Sum_probs=173.6

Q ss_pred             CCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCCCCCcccccce
Q 001366          753 DGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGV----------SKKIKIFEFNALFNDSVDVYYPA  822 (1092)
Q Consensus       753 D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~----------D~~I~Iwd~~~~~~~~~~~~~~~  822 (1092)
                      ++.+.+|+....+....+.     .+..+  .++|+|||++|++++.          ++.|.|||..+....       .
T Consensus        46 ~~~v~v~D~~tg~~~~~~~-----~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~-------~  111 (373)
T d2madh_          46 IIQQWVLDAGSGSILGHVN-----GGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI-------A  111 (373)
T ss_pred             CceEEEEECCCCCEEEEEe-----CCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEE-------E
Confidence            3456777777776666544     23322  5899999999998753          578999998763210       0


Q ss_pred             eeecCCC-------CeEEEEEecCCCCEEEEE--ECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCC
Q 001366          823 VEMSNRS-------KLSCVCWNNYIKNYLASA--DYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDD  893 (1092)
Q Consensus       823 ~~~~h~~-------~V~~v~~sp~~~~~LaSg--s~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~D  893 (1092)
                      ....+..       ....+.|+++ +..++..  ..++.+.+|+..+.+.....    ....++.++|.....+++.+.|
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~d  186 (373)
T d2madh_         112 DIELPDAPRFDVGPYSWMNANTPN-NADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQ  186 (373)
T ss_pred             EEecCCcceeEeccCCCcEEEEeC-CCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCC
Confidence            1111111       2245778887 4544433  44578899998877655443    3456889999444567899999


Q ss_pred             CcEEEEecCCCceeeeEec-----C--CceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc-eEEecCCCCC------
Q 001366          894 CSVKLWNINEKNSLATIKN-----I--ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP-WCVLAGHEKA------  959 (1092)
Q Consensus       894 g~I~iWDl~~~~~l~~l~~-----~--~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~-~~~l~~H~~~------  959 (1092)
                      +++.+||...+........     .  .....+.+.+++  .++..+.++.+++|+....... ......+...      
T Consensus       187 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (373)
T d2madh_         187 GGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW  264 (373)
T ss_pred             CeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeee
Confidence            9999999998877765541     1  123445566555  5666778999999998865421 1111111111      


Q ss_pred             ----eEEEEEc-----------CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC--EEE
Q 001366          960 ----VSYVKFL-----------DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG--YIA 1022 (1092)
Q Consensus       960 ----V~~v~fs-----------~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~--~la 1022 (1092)
                          ...+.++           ++..+++...++.|.+||+.+        +..+..+. +...+..++|+|||+  +++
T Consensus       265 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t--------~~~~~~~~-~~~~~~~~a~spDG~~~l~v  335 (373)
T d2madh_         265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--------GQTSSQIS-LGHDVDAISVAQDGGPDLYA  335 (373)
T ss_pred             ccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC--------CcEEEEec-CCCCeeEEEECCCCCEEEEE
Confidence                1112222           344566777888999999983        44555554 566789999999998  457


Q ss_pred             EEecCCcEEEEeCCCCCceeeee
Q 001366         1023 CGSESNEVYAYHRSLPMPITSYK 1045 (1092)
Q Consensus      1023 sgs~Dg~I~Iwd~~~~~~i~~~~ 1045 (1092)
                      +++.|++|+|||..+++.+.++.
T Consensus       336 t~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         336 LSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EeCCCCeEEEEECCCCCEEEEEC
Confidence            88999999999999999888764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=4.4e-13  Score=148.67  Aligned_cols=272  Identities=11%  Similarity=-0.003  Sum_probs=170.4

Q ss_pred             cCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCCCCcccccc
Q 001366          752 FDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAG----------VSKKIKIFEFNALFNDSVDVYYP  821 (1092)
Q Consensus       752 ~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg----------~D~~I~Iwd~~~~~~~~~~~~~~  821 (1092)
                      .++.+.+|+....+..+.+..+     ..+  .++|+|||++|++++          .|+.|++||..+...........
T Consensus        26 ~~~~v~v~D~~tg~~~~~~~~g-----~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~   98 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIGMIDGG-----FLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD   98 (355)
T ss_dssp             SSEEEEEEETTTTEEEEEEEEC-----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred             CcCeEEEEECCCCcEEEEEECC-----CCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCC
Confidence            3456788998888877766532     222  589999999887653          47899999987622100000000


Q ss_pred             eeeecCCCCeEEEEEecCCCCEEEEEE--CCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEE
Q 001366          822 AVEMSNRSKLSCVCWNNYIKNYLASAD--YDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW  899 (1092)
Q Consensus       822 ~~~~~h~~~V~~v~~sp~~~~~LaSgs--~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iW  899 (1092)
                      ............++|+++ +.+++.++  .+..+.+||..+++.+..+..+....   .+.. .....++.+.|+...+|
T Consensus        99 ~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~dg~~~~v  173 (355)
T d2bbkh_          99 APRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH---IFPT-APDTFFMHCRDGSLAKV  173 (355)
T ss_dssp             CCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---EEEE-ETTEEEEEETTSCEEEE
T ss_pred             cceeecCCCCceEEEecC-CCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce---Eeec-CCcceEEEcCCCCEEEE
Confidence            000111223456889998 67666654  46789999999999888876544322   1111 23344555566666666


Q ss_pred             ecCCCceeeeEe-------cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc-eEEecCCC----------CCeE
Q 001366          900 NINEKNSLATIK-------NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP-WCVLAGHE----------KAVS  961 (1092)
Q Consensus       900 Dl~~~~~l~~l~-------~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~-~~~l~~H~----------~~V~  961 (1092)
                      .......+..+.       +...+.+..+.+++. .+++++.++.+++|++...... +.....|.          ....
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  252 (355)
T d2bbkh_         174 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ  252 (355)
T ss_dssp             ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred             EecCCCeEEEEecccccceecceeeeccccCCCC-eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceE
Confidence            554443333222       122355567777775 7788899999999999876531 11111111          1223


Q ss_pred             EEEEc-CCCEEEEEECC----------CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC--EEEEEecCC
Q 001366          962 YVKFL-DSGTLVTASTD----------NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG--YIACGSESN 1028 (1092)
Q Consensus       962 ~v~fs-~~~~L~Sgs~D----------g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~--~lasgs~Dg 1028 (1092)
                      .++++ ++..++..+.+          +.|.+||..+        +..+..+.. ...+.+++|+|||+  ++++++.|+
T Consensus       253 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t--------~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~  323 (355)
T d2bbkh_         253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--------GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDK  323 (355)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT--------CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTT
T ss_pred             EEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC--------CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCC
Confidence            46666 55555544433          4699999984        444555543 34578999999997  467778899


Q ss_pred             cEEEEeCCCCCceeeee
Q 001366         1029 EVYAYHRSLPMPITSYK 1045 (1092)
Q Consensus      1029 ~I~Iwd~~~~~~i~~~~ 1045 (1092)
                      .|+|||..+++.+.++.
T Consensus       324 ~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         324 TLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEEEETTTCCEEEEEC
T ss_pred             EEEEEECCCCCEEEEEe
Confidence            99999999999888764

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.41  E-value=4.6e-14  Score=144.80  Aligned_cols=68  Identities=12%  Similarity=-0.067  Sum_probs=57.3

Q ss_pred             CcccccCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhhcCccccCCCCCCeEEccCCcEEEeccccccccc
Q 001366          304 LRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETL  380 (1092)
Q Consensus       304 ~~~~~~~~GgsL~~~l~~~~~~~~~~~~~~i~~qil~~l~~lHs~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~~~  380 (1092)
                      -.+|+|++|..+.+        ++...+..++.||+.+|.|||++||+||||||+|||+++ +.++++|||+++...
T Consensus        86 ~lvme~~~~~~~~~--------l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~-~~~~liDFG~a~~~~  153 (191)
T d1zara2          86 AVLMELIDAKELYR--------VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSE-EGIWIIDFPQSVEVG  153 (191)
T ss_dssp             EEEEECCCCEEGGG--------CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEET-TEEEECCCTTCEETT
T ss_pred             EEEEEeeccccccc--------hhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeC-CCEEEEECCCcccCC
Confidence            35899999987654        233356789999999999999999999999999999985 458999999998755

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=4.5e-11  Score=138.89  Aligned_cols=143  Identities=11%  Similarity=-0.032  Sum_probs=106.9

Q ss_pred             cCCCCcEEeEcCCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCC
Q 001366          742 QNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGV---------SKKIKIFEFNALF  812 (1092)
Q Consensus       742 ~~~~~~l~~~~D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~---------D~~I~Iwd~~~~~  812 (1092)
                      |.+++.+....|+.+.+|+....+....+....+..|...|.++.|+|||++||.++.         ++.+.|||+.+..
T Consensus        24 W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~  103 (470)
T d2bgra1          24 WISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ  103 (470)
T ss_dssp             ECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             eCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc
Confidence            4556666556788899999988877776766678888899999999999999998854         4567899987622


Q ss_pred             CCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeecc------------------CccE
Q 001366          813 NDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEH------------------EKRA  874 (1092)
Q Consensus       813 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h------------------~~~V  874 (1092)
                      .        .....+...+..+.|+|+ ++.||.. .|+.+++|+..+++.......+                  ....
T Consensus       104 ~--------~~l~~~~~~~~~~~~SPD-G~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1         104 L--------ITEERIPNNTQWVTWSPV-GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             E--------CCSSCCCTTEEEEEECSS-TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             c--------cccccCCccccccccccC-cceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            1        122346778999999999 8888875 5789999999988766543321                  1223


Q ss_pred             EEEEEecCCCCEEEEEeCCCc
Q 001366          875 WSVDFSQVHPTKLASGSDDCS  895 (1092)
Q Consensus       875 ~sv~fsp~~~~~laSgs~Dg~  895 (1092)
                      ..+.|+| +++.||....|.+
T Consensus       174 ~~~~wSP-DGk~ia~~~~d~~  193 (470)
T d2bgra1         174 SALWWSP-NGTFLAYAQFNDT  193 (470)
T ss_dssp             BCEEECT-TSSEEEEEEEECT
T ss_pred             cccEECC-CCCccceeEecCC
Confidence            5678999 8999998876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.28  E-value=1.7e-11  Score=137.63  Aligned_cols=283  Identities=10%  Similarity=-0.039  Sum_probs=170.3

Q ss_pred             CCCEEEEEEcCCCCEE---EEEeCCCcEE--EEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEE-----
Q 001366          779 ANVICSISFDRDEDHF---AAAGVSKKIK--IFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD-----  848 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~l---atgg~D~~I~--Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs-----  848 (1092)
                      ..+...++..++++..   +++..++...  +||..+.       ........+..  ..++|+|+ +..|++++     
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~-------~~~~~~~~~~~--~~~a~spD-g~~i~~~~~~~~~   88 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG-------VTLGHSLGAFL--SLAVAGHS-GSDFALASTSFAR   88 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT-------EEEEEEEECTT--CEEEECTT-SSCEEEEEEEETT
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCC-------cEEEEEeCCCC--CcceECCC-CCEEEEEcccCcc
Confidence            3344445566777742   2234455544  5565431       11111222222  35889998 66666654     


Q ss_pred             -----CCCcEEEEECCCCceEEEeeccCc-------cEEEEEEecCCCCEEEEEe-CCCcEEEEecCCCceeeeEecCCc
Q 001366          849 -----YDGVVKLWDACTGQTVSHYIEHEK-------RAWSVDFSQVHPTKLASGS-DDCSVKLWNINEKNSLATIKNIAN  915 (1092)
Q Consensus       849 -----~DgtV~IWD~~tg~~i~~l~~h~~-------~V~sv~fsp~~~~~laSgs-~Dg~I~iWDl~~~~~l~~l~~~~~  915 (1092)
                           .|++|++||..+++.+..+..+..       ....++|+| +++++++++ .++.+.+||+.+++.+..+.....
T Consensus        89 ~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~  167 (368)
T d1mdah_          89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC  167 (368)
T ss_dssp             TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC
T ss_pred             ccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc
Confidence                 478899999999998888764432       235689999 888777665 579999999999999888775432


Q ss_pred             eEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEE-----ecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCCCCC
Q 001366          916 VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCV-----LAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSH  990 (1092)
Q Consensus       916 V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~-----l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~~~~  990 (1092)
                      .   .+.|.+...+++.+.||.+.+|++.........     ...+...+..+.+...+.++. +..+.+.++++.....
T Consensus       168 ~---~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~  243 (368)
T d1mdah_         168 F---HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGA  243 (368)
T ss_dssp             C---CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCC
T ss_pred             c---eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE-ecCCCEEEEeecCCce
Confidence            2   123344456777788888888888765443222     223444455666664444332 3345566666653211


Q ss_pred             CC--CCCCceeEEEc--CCCCCeEEEEEecCCCEEEEEecC---------CcEEEEeCCCCCceeeeeccccCCCCCccc
Q 001366          991 TG--PSTNACSLTFS--GHTNEKNFVGLSTADGYIACGSES---------NEVYAYHRSLPMPITSYKFGSIDPISGKET 1057 (1092)
Q Consensus       991 ~~--~~~~~~~~~l~--~h~~~V~~v~~spdg~~lasgs~D---------g~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~ 1057 (1092)
                      ..  ...........  ........+++++++..++....+         ..|.+||..+++.+..+..           
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-----------  312 (368)
T d1mdah_         244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-----------  312 (368)
T ss_dssp             EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-----------
T ss_pred             EEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-----------
Confidence            00  00000000000  001112347889998865544322         3589999998887765542           


Q ss_pred             cCCCCCCEEEEEEeCCCC-E-EEEEecCCeEEEEEc
Q 001366         1058 DDDNGLFVSSVCWRRRSD-M-VVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1058 ~~~h~~~V~sva~spd~~-~-Lasgs~DG~V~vW~l 1091 (1092)
                          ...+.+++|+|||+ + ++++..|+.|+|||.
T Consensus       313 ----~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         313 ----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             ----EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             ----CCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence                24588999999996 3 456677899999995

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.22  E-value=1.9e-10  Score=128.92  Aligned_cols=272  Identities=10%  Similarity=0.001  Sum_probs=165.4

Q ss_pred             EcCCeE--EEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCCCC-Ccc
Q 001366          751 FFDGLC--KYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAG----------VSKKIKIFEFNALFND-SVD  817 (1092)
Q Consensus       751 ~~D~~~--k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg----------~D~~I~Iwd~~~~~~~-~~~  817 (1092)
                      .++++.  .+++....+..+.+..     +...  .++|+|||++|++++          .|++|.+||..+.... .+.
T Consensus        41 ~~~g~~~~~~~d~~~~~~~~~~~~-----~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~  113 (368)
T d1mdah_          41 YFAGTTENWVSCAGCGVTLGHSLG-----AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             TTCSSEEEEEEETTTTEEEEEEEE-----CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             cCCCcceEEEEeCCCCcEEEEEeC-----CCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeec
Confidence            344554  4556677776665543     2223  378999999888765          3678999998752110 000


Q ss_pred             cccceeeecCCCCeEEEEEecCCCCEEEEEE-CCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcE
Q 001366          818 VYYPAVEMSNRSKLSCVCWNNYIKNYLASAD-YDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSV  896 (1092)
Q Consensus       818 ~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs-~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I  896 (1092)
                      .... ...........++|+|| +++|++++ .++.|.+||+.+++.+..+..+....    +.|.....+++.+.||++
T Consensus       114 ~p~~-~~~~~g~~p~~~a~SpD-Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~  187 (368)
T d1mdah_         114 LPDA-PRFSVGPRVHIIGNCAS-SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             ETTS-CSCCBSCCTTSEEECTT-SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSC
T ss_pred             CCcc-ceecccCCccceEECCC-CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----EccCCCceEEEEcCCCCE
Confidence            0000 00001122346899999 66666655 57999999999999988887655432    122234577888889999


Q ss_pred             EEEecCCCceeeeEe-------cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceE-EecCCC----------C
Q 001366          897 KLWNINEKNSLATIK-------NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC-VLAGHE----------K  958 (1092)
Q Consensus       897 ~iWDl~~~~~l~~l~-------~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~-~l~~H~----------~  958 (1092)
                      .+|++..........       ....+..+.+.+++. .+.  ...+.+++++......... ....+.          .
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T d1mdah_         188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM-LVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA  264 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE-EEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred             EEEEecCCceeeeeeecccccccccceeecccccCcE-EEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCC
Confidence            999987665443322       123345677777762 333  3456677777665432111 111111          1


Q ss_pred             CeEEEEEc-CCCEEEEEECC---------CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC--EEEEEec
Q 001366          959 AVSYVKFL-DSGTLVTASTD---------NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG--YIACGSE 1026 (1092)
Q Consensus       959 ~V~~v~fs-~~~~L~Sgs~D---------g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~--~lasgs~ 1026 (1092)
                      ....++++ +++.++....+         ..|.+||..+        ++.+.++. +...+..++|+|||+  ++++++.
T Consensus       265 g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t--------~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~  335 (368)
T d1mdah_         265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--------GQTSGPIS-NGHDSDAIIAAQDGASDNYANSAG  335 (368)
T ss_dssp             SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--------CCEEECCE-EEEEECEEEECCSSSCEEEEEETT
T ss_pred             CceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC--------CcEeEEec-CCCceeEEEECCCCCEEEEEEeCC
Confidence            12235555 44544433221         3588999984        34444443 234678899999997  3567778


Q ss_pred             CCcEEEEeCCCCCceeeeecc
Q 001366         1027 SNEVYAYHRSLPMPITSYKFG 1047 (1092)
Q Consensus      1027 Dg~I~Iwd~~~~~~i~~~~~~ 1047 (1092)
                      |+.|+|||..+++.+.+++.|
T Consensus       336 ~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         336 TEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             TTEEEEEESSSCEEEEECCCC
T ss_pred             CCeEEEEECCCCCEEEEEECC
Confidence            999999999999999888753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.07  E-value=1.9e-10  Score=131.25  Aligned_cols=272  Identities=10%  Similarity=-0.004  Sum_probs=173.7

Q ss_pred             EeEcCCeEEEEEcccceEEeeEEee-------------------------eecCCCCCEEEEEEcCCCCEEEEE-eCCCc
Q 001366          749 GAFFDGLCKYARYSKFEVQGMLRTG-------------------------EFNNSANVICSISFDRDEDHFAAA-GVSKK  802 (1092)
Q Consensus       749 ~~~~D~~~k~w~~~~~~~~~~l~~~-------------------------~l~~h~~~V~sl~fspdg~~latg-g~D~~  802 (1092)
                      +...+|.+.+|++...+....+..-                         ....|...+....++|||++|.+. ..++.
T Consensus        16 Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~r   95 (441)
T d1qnia2          16 SGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTR   95 (441)
T ss_dssp             ECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTE
T ss_pred             eCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCE
Confidence            4446788888888777666554320                         011234456666678999988555 47789


Q ss_pred             EEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCc------------------EEEEECCCCceE
Q 001366          803 IKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGV------------------VKLWDACTGQTV  864 (1092)
Q Consensus       803 I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dgt------------------V~IWD~~tg~~i  864 (1092)
                      |.++|+.+..      ........+...+..++|+|++....+++..+..                  +..+|..+.+..
T Consensus        96 VavIDl~t~k------~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          96 VARIRLDIMK------TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             EEEEETTTTE------EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             EEEEECCCCc------EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            9999987521      1112234456788999999984433344333333                  345888888877


Q ss_pred             EEeeccCccEEEEEEecCCCCEEEEEeCC-----------------------------------------CcEEEEecCC
Q 001366          865 SHYIEHEKRAWSVDFSQVHPTKLASGSDD-----------------------------------------CSVKLWNINE  903 (1092)
Q Consensus       865 ~~l~~h~~~V~sv~fsp~~~~~laSgs~D-----------------------------------------g~I~iWDl~~  903 (1092)
                      .++... .....++|+| +++++++.+.+                                         +.+.+++...
T Consensus       170 ~qI~v~-~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~  247 (441)
T d1qnia2         170 WQVIVD-GNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE  247 (441)
T ss_dssp             EEEEES-SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS
T ss_pred             EEEecC-CCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC
Confidence            776643 4567899999 78877766543                                         3455666565


Q ss_pred             CceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcc----------eEEecCCCCCeEEEEEcCCC-EEE
Q 001366          904 KNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAP----------WCVLAGHEKAVSYVKFLDSG-TLV  972 (1092)
Q Consensus       904 ~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~----------~~~l~~H~~~V~~v~fs~~~-~L~  972 (1092)
                      .+.+..+........+.++|||.+++++|..+++|.+||+.+....          +.-.....-......|.+.+ .+.
T Consensus       248 ~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yt  327 (441)
T d1qnia2         248 SEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYT  327 (441)
T ss_dssp             CSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEE
T ss_pred             CceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEE
Confidence            6667777766667889999999877888999999999998753211          11111111123445787444 566


Q ss_pred             EEECCCeEEEEEcCCCCC--CCCCCCceeEEE-----cCCCCCeEEEEEecCCCEEEEE---ecCC
Q 001366          973 TASTDNKLKLWDLKRTSH--TGPSTNACSLTF-----SGHTNEKNFVGLSTADGYIACG---SESN 1028 (1092)
Q Consensus       973 Sgs~Dg~I~vWDl~~~~~--~~~~~~~~~~~l-----~~h~~~V~~v~~spdg~~lasg---s~Dg 1028 (1092)
                      |...|.+|..|++.....  .+......+..+     .||...+.+.+++|||+||+++   |.|.
T Consensus       328 s~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         328 TLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred             cccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcccccc
Confidence            777899999999852100  000111222233     4677777778899999999999   4554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.06  E-value=2.7e-10  Score=129.92  Aligned_cols=248  Identities=5%  Similarity=-0.077  Sum_probs=155.5

Q ss_pred             CCCCeEEEEEecCCCCEE-EEEECCCcEEEEECCCCceEEEee-ccCccEEEEEEecCCCCE--EEEEeCCC--------
Q 001366          827 NRSKLSCVCWNNYIKNYL-ASADYDGVVKLWDACTGQTVSHYI-EHEKRAWSVDFSQVHPTK--LASGSDDC--------  894 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~L-aSgs~DgtV~IWD~~tg~~i~~l~-~h~~~V~sv~fsp~~~~~--laSgs~Dg--------  894 (1092)
                      |.-.+++....|| +++| ++...++.|.+||+.++++...+. .+...+..++|+| +++.  ++..+.+.        
T Consensus        70 hhP~~s~t~gtpD-Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          70 HHPHISMTDGRYD-GKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CCCEEEEETTEEE-EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSS
T ss_pred             cCCCcceecccCC-CCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCccc
Confidence            3444556666788 6666 555678999999999999877765 3567789999999 6663  33333322        


Q ss_pred             ---------cEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECC------------------------------
Q 001366          895 ---------SVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSAD------------------------------  935 (1092)
Q Consensus       895 ---------~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~D------------------------------  935 (1092)
                               .+..+|..+.+...++.....+..+.|+|+|. ++++++.+                              
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk-~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGK-YATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEecCCCccceEECCCCC-EEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                     23568999888888888778889999999997 45545432                              


Q ss_pred             -----------CeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEE-EEEECCCeEEEEEcCCCCCCCC---CCCcee
Q 001366          936 -----------YRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTL-VTASTDNKLKLWDLKRTSHTGP---STNACS  999 (1092)
Q Consensus       936 -----------g~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L-~Sgs~Dg~I~vWDl~~~~~~~~---~~~~~~  999 (1092)
                                 +.+.+++.. ....+.++..... ...+.++ +++++ +++..+++|.|||+.+......   ....++
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~-~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~  304 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRG-ESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI  304 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSS-SCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred             cCCCEEEeCCCCcEEEEccc-CCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE
Confidence                       223333322 2233445554443 4678888 66665 5677899999999875221000   001111


Q ss_pred             EEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCC---CccccCCCCCCEEEEEEeCCCCE
Q 001366         1000 LTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPIS---GKETDDDNGLFVSSVCWRRRSDM 1076 (1092)
Q Consensus      1000 ~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~---~~~~~~~h~~~V~sva~spd~~~ 1076 (1092)
                      .......-.....+|+++|..+.+...|..|..|++...  +..+.-...+.+.   ......+|...+.+.+++|||++
T Consensus       305 ~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~--~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~  382 (441)
T d1qnia2         305 VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADA--IKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKW  382 (441)
T ss_dssp             EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH--HHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCE
T ss_pred             EeecccccCcccceecCCceEEEcccccceEEEeccchh--hhhhccCCCceeEeccccccCCCCCccccccccCCCCcE
Confidence            111111122345689999988899999999999996311  1100000000000   00123577777888889999999


Q ss_pred             EEEEe
Q 001366         1077 VVAAN 1081 (1092)
Q Consensus      1077 Lasgs 1081 (1092)
                      |++++
T Consensus       383 l~s~~  387 (441)
T d1qnia2         383 LVVLS  387 (441)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            99994

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.90  E-value=6.3e-09  Score=120.28  Aligned_cols=224  Identities=10%  Similarity=-0.028  Sum_probs=137.4

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEE---------CCCcEE
Q 001366          784 SISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD---------YDGVVK  854 (1092)
Q Consensus       784 sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs---------~DgtV~  854 (1092)
                      ++.|.++++++..  .|+.|.+||+.+....  ..........+...|.++.|+|| +++|+.++         .++.+.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~i~~~~~SpD-g~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEE--EEECTTTTTTSSSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEE--EEEchhhhhhccCccceeEECCC-CCEEEEEECCcceeeeccCceEE
Confidence            3679999987764  5788999998763211  11111122345678999999999 88888774         357889


Q ss_pred             EEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEec-------------------CCc
Q 001366          855 LWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKN-------------------IAN  915 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~-------------------~~~  915 (1092)
                      |||+.+++ +..+..|...+..+.|+| +++.+|.. .++.+.+|+..++........                   .+.
T Consensus        96 l~d~~~~~-~~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          96 IYDLNKRQ-LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             EEETTTTE-ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEECCCCc-ccccccCCcccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            99999876 456788899999999999 89988886 567899999998876543321                   123


Q ss_pred             eEEEEEccCCCeEEEEEECC-CeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCC
Q 001366          916 VCCVQFSAHSSHLLAFGSAD-YRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGP  993 (1092)
Q Consensus       916 V~sl~fsp~~~~~latgs~D-g~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~  993 (1092)
                      ...+.|+|||. .|++...| ..+..|++.....    .......+..+.+. .+.    ...+.++.+||+........
T Consensus       173 ~~~~~wSPDGk-~ia~~~~d~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~g~----~~~~~~~~v~~~~~~~~~~~  243 (470)
T d2bgra1         173 YSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSD----ESLQYPKTVRVPYPKAGA----VNPTVKFFVVNTDSLSSVTN  243 (470)
T ss_dssp             SBCEEECTTSS-EEEEEEEECTTCCEEEEEECCS----TTCSSCEEEEEECCBTTS----CCCEEEEEEEEGGGCCSSSC
T ss_pred             ccccEECCCCC-ccceeEecCCcCceEEEEeecc----CCCCCCeeeeeccccccc----cCCcceEEEEECCCcceeee
Confidence            45688999997 66665544 3355544321110    00111223333433 221    22345688999875432211


Q ss_pred             CCCcee---EEEcCCCCCeEEEEEecCCCEEEEE
Q 001366          994 STNACS---LTFSGHTNEKNFVGLSTADGYIACG 1024 (1092)
Q Consensus       994 ~~~~~~---~~l~~h~~~V~~v~~spdg~~lasg 1024 (1092)
                      ......   .........+..+.|.+++..++..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  277 (470)
T d2bgra1         244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (470)
T ss_dssp             CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             ccccccCCccccCCCCceEEEEEEcCCCceeEEE
Confidence            110000   0011223345678899988765543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.76  E-value=1.5e-06  Score=94.05  Aligned_cols=232  Identities=9%  Similarity=0.029  Sum_probs=157.0

Q ss_pred             CCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce-
Q 001366          828 RSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS-  906 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~-  906 (1092)
                      ...+..+++.|+ ++++++...+++|..||.. +. ...+......+.+++|.+ +++++++...++.+..|+...... 
T Consensus        27 ~~~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          27 NTFLENLASAPD-GTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             TCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCCcCCEEECCC-CCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccc
Confidence            346788999998 8899999889999888854 33 334455677899999999 889999988888888888754322 


Q ss_pred             eeeE---ecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEec---------CCCCCeEEEEEcCCCEEEEE
Q 001366          907 LATI---KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA---------GHEKAVSYVKFLDSGTLVTA  974 (1092)
Q Consensus       907 l~~l---~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~---------~H~~~V~~v~fs~~~~L~Sg  974 (1092)
                      ...+   ......+.+++.+++ +++++.+.++.+..+|.......+....         .....+..+.+..+..+++.
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~  181 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN  181 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE
T ss_pred             eeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeec
Confidence            2222   234568899999998 5788888889999999886543222211         11234566777665566777


Q ss_pred             ECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCC
Q 001366          975 STDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISG 1054 (1092)
Q Consensus       975 s~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~ 1054 (1092)
                      +..+.|..+++......     .....+. .......++++++|.++++...++.|..|+... +.......        
T Consensus       182 ~~~~~i~~~~~~~~~~~-----~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~--------  246 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKP-----GEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQA--------  246 (302)
T ss_dssp             TTTTEEEEEEBCTTSCB-----CCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECG--------
T ss_pred             CCCCeEEeccccccccc-----ccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEec--------
Confidence            78899999988743211     1111111 223345799999999888888889999996543 22111110        


Q ss_pred             ccccCCCCCCEEEEEE---eCCCCEEEEEecC
Q 001366         1055 KETDDDNGLFVSSVCW---RRRSDMVVAANSS 1083 (1092)
Q Consensus      1055 ~~~~~~h~~~V~sva~---spd~~~Lasgs~D 1083 (1092)
                          ...-..+++++|   ++|++.|..++..
T Consensus       247 ----~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         247 ----EQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             ----GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ----CCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence                112345799999   6788888766544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.76  E-value=3.6e-06  Score=89.89  Aligned_cols=233  Identities=11%  Similarity=0.105  Sum_probs=159.3

Q ss_pred             eEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeecc------CccEEEEEEecCCCCEEEEE-eCCCcEEEEecCC
Q 001366          831 LSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEH------EKRAWSVDFSQVHPTKLASG-SDDCSVKLWNINE  903 (1092)
Q Consensus       831 V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h------~~~V~sv~fsp~~~~~laSg-s~Dg~I~iWDl~~  903 (1092)
                      -..|+++++ ++++++-..+..|++||. .|+.+..+...      ......+++....+..+++. +.++.|.+++.. 
T Consensus        25 P~gvavd~d-g~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          25 PSGVAVNAQ-NDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             EEEEEECTT-CCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             ccEEEEcCC-CCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            478899987 778887777889999996 47777766421      12345677666344444443 345677777764 


Q ss_pred             CceeeeEec--CCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEe--cCCCCCeEEEEEc-CCCEEEEEECCC
Q 001366          904 KNSLATIKN--IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVL--AGHEKAVSYVKFL-DSGTLVTASTDN  978 (1092)
Q Consensus       904 ~~~l~~l~~--~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l--~~H~~~V~~v~fs-~~~~L~Sgs~Dg  978 (1092)
                      +.....+..  ......+++.+++. ++++....+.+.++|....  .+..+  ..+......+++. ++..+++....+
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN--VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC--EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             ccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCc--eeecccccccccccceeeeccceeEEeeecccc
Confidence            666666653  35578899999885 7777777788888886532  23333  3456677888887 445566667788


Q ss_pred             eEEEEEcCCCCCCCCCCCceeEEEc--CCCCCeEEEEEecCCCEEEEEec-CCcEEEEeCCCCCceeeeeccccCCCCCc
Q 001366          979 KLKLWDLKRTSHTGPSTNACSLTFS--GHTNEKNFVGLSTADGYIACGSE-SNEVYAYHRSLPMPITSYKFGSIDPISGK 1055 (1092)
Q Consensus       979 ~I~vWDl~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~spdg~~lasgs~-Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~ 1055 (1092)
                      .|.+||..         +..+.++.  ++......|++.++|.++++-+. ++.|.+|+. .++.+..+..         
T Consensus       179 ~V~~~d~~---------G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~---------  239 (279)
T d1q7fa_         179 CVKVFNYE---------GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES---------  239 (279)
T ss_dssp             EEEEEETT---------CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE---------
T ss_pred             ceeeeecC---------CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeC---------
Confidence            99999975         34455553  35556788999999998877654 457999974 5666655531         


Q ss_pred             cccCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEcC
Q 001366         1056 ETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 1092 (1092)
Q Consensus      1056 ~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~lv 1092 (1092)
                         .......+.|++.|+|.+++ ++.++.|++|+.+
T Consensus       240 ---~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         240 ---KVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             ---SSCCSCEEEEEEETTTEEEE-EETTTEEEEEECS
T ss_pred             ---CCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEee
Confidence               11223578999999997655 5578999999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.69  E-value=1.2e-06  Score=92.67  Aligned_cols=236  Identities=10%  Similarity=-0.006  Sum_probs=153.4

Q ss_pred             CCCeEEEEEecCCCCEEEEE-ECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce
Q 001366          828 RSKLSCVCWNNYIKNYLASA-DYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS  906 (1092)
Q Consensus       828 ~~~V~~v~~sp~~~~~LaSg-s~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~  906 (1092)
                      ...-.+|++.++ +++.++. +..+.|..++............-......|++.+ ++.++++....+.+++++-.+...
T Consensus        13 ~~~P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          13 RLSPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             CCCEEEEEECTT-CCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred             cCCCCEEEEcCC-CCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence            344578999987 6655554 4557777776544332222111123457889998 788888877777787777666655


Q ss_pred             eeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEc
Q 001366          907 LATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDL  985 (1092)
Q Consensus       907 l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl  985 (1092)
                      +..........++++++++. ++++...+..+..++........ ....-......+++. .+..+++...++.|..+|.
T Consensus        91 ~~~~~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          91 VLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             ECCCCSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEE-CCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             eeeeeeeeecccccccccce-eEeeccccccccccccccceeee-eeecccCCcceeeecCCCCEeeecccccccccccc
Confidence            54444456788999999885 77777777788888876543211 111223455788887 5566677778888999987


Q ss_pred             CCCCCCCCCCCceeEEE-cCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCCCCC
Q 001366          986 KRTSHTGPSTNACSLTF-SGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLF 1064 (1092)
Q Consensus       986 ~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~ 1064 (1092)
                      ...         ....+ .........++++++|.++++....+.|..++..... ...+.             ...-..
T Consensus       169 ~~~---------~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~-------------~~~~~~  225 (260)
T d1rwia_         169 ESN---------NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLP-------------FTGLNT  225 (260)
T ss_dssp             TTC---------CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECC-------------CCSCCC
T ss_pred             ccc---------eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEc-------------cCCCCC
Confidence            631         12222 2344567889999999988888888888888754332 11111             111235


Q ss_pred             EEEEEEeCCCCEEEEEecCCeEEEEE
Q 001366         1065 VSSVCWRRRSDMVVAANSSGCIKVLQ 1090 (1092)
Q Consensus      1065 V~sva~spd~~~Lasgs~DG~V~vW~ 1090 (1092)
                      ..+|++++++.++++-..++.|+.++
T Consensus       226 P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         226 PLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            78999999999888877778777653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=1.5e-05  Score=83.33  Aligned_cols=236  Identities=12%  Similarity=0.102  Sum_probs=141.6

Q ss_pred             cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCC---cEEEEECCCCceEEEeeccCccEEEEE
Q 001366          802 KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDG---VVKLWDACTGQTVSHYIEHEKRAWSVD  878 (1092)
Q Consensus       802 ~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~Dg---tV~IWD~~tg~~i~~l~~h~~~V~sv~  878 (1092)
                      .|.|.|.+.        ..+.....+...+..-+|+|| |+.||-.....   .+.+.+...+.. ..+..+........
T Consensus        20 ~l~i~d~dG--------~~~~~l~~~~~~~~sP~wSPD-Gk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   89 (269)
T d2hqsa1          20 ELRVSDYDG--------YNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPA   89 (269)
T ss_dssp             EEEEEETTS--------CSCEEEEEESSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEE
T ss_pred             EEEEEcCCC--------CCcEEEecCCCceeeeEECCC-CCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccce
Confidence            466666653        122223344677888999999 77777654433   355666655543 34455777888999


Q ss_pred             EecCCCCEEEEEeC-CCcEEE--EecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCe--EEEEEcCCCCcceEEe
Q 001366          879 FSQVHPTKLASGSD-DCSVKL--WNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYR--TYCYDLRNARAPWCVL  953 (1092)
Q Consensus       879 fsp~~~~~laSgs~-Dg~I~i--WDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~--I~vwDlr~~~~~~~~l  953 (1092)
                      |+| ++..++..+. ++...+  +.....................+++++...+++...++.  |.++++...  ....+
T Consensus        90 ~sp-dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~--~~~~~  166 (269)
T d2hqsa1          90 FSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--APQRI  166 (269)
T ss_dssp             ECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CCEEC
T ss_pred             ecC-CCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc--cceee
Confidence            999 7777766553 333333  333333333333345555667788887767777766665  444555443  33445


Q ss_pred             cCCCCCeEEEEEc-CCCEEEEEEC-CCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEec---CC
Q 001366          954 AGHEKAVSYVKFL-DSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE---SN 1028 (1092)
Q Consensus       954 ~~H~~~V~~v~fs-~~~~L~Sgs~-Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~---Dg 1028 (1092)
                      ..+........|+ ++..++..+. .+...+|.....      ..  ......+........|||||++||-.+.   ..
T Consensus       167 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~------~~--~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~  238 (269)
T d2hqsa1         167 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA------TG--GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGS  238 (269)
T ss_dssp             CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT------TC--CEEECCCSSSCEEEEECTTSSEEEEEEEETTEE
T ss_pred             ecccccccccccccccceeEEEeecCCceeeeEeecc------cc--cceEeecCccccceEECCCCCEEEEEEcCCCCc
Confidence            5566667777888 6666665544 444555544421      11  1233344556678899999998876553   34


Q ss_pred             cEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCC
Q 001366         1029 EVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRR 1073 (1092)
Q Consensus      1029 ~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd 1073 (1092)
                      .|++|++..+.....               ......+...+|+|-
T Consensus       239 ~l~~~~~dg~~~~~l---------------t~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         239 VLNLVSTDGRFKARL---------------PATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEETTSCCEEEC---------------CCSSSEEEEEEECCC
T ss_pred             EEEEEECCCCCEEEE---------------eCCCCcEEeEEeCCC
Confidence            688888876554321               223456888999984

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=5e-06  Score=87.18  Aligned_cols=213  Identities=10%  Similarity=0.010  Sum_probs=126.7

Q ss_pred             cEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCC---cEEEEecCCCceeeeEecCCceEEEEEccCCCeE
Q 001366          852 VVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDC---SVKLWNINEKNSLATIKNIANVCCVQFSAHSSHL  928 (1092)
Q Consensus       852 tV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg---~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~  928 (1092)
                      .|.|-|...+.. ..+..+...+.+.+|+| ||+.||-.....   .+.+.+...+................|+|+|..+
T Consensus        20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCSC-EEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCCc-EEEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCee
Confidence            577777654433 34444567788999999 899988765443   4667777776666556677888899999999865


Q ss_pred             EEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCC-EEEEEECCCeEE--EEEcCCCCCCCCCCCceeEEEcC
Q 001366          929 LAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSG-TLVTASTDNKLK--LWDLKRTSHTGPSTNACSLTFSG 1004 (1092)
Q Consensus       929 latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~-~L~Sgs~Dg~I~--vWDl~~~~~~~~~~~~~~~~l~~ 1004 (1092)
                      +.....++...++..............+........++ .+. .+++...++...  +.++..         .....+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~---------~~~~~~~~  168 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING---------GAPQRITW  168 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---------SCCEECCC
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccc---------ccceeeec
Confidence            55555555544444333322233333344444444555 444 344555566544  444442         22233444


Q ss_pred             CCCCeEEEEEecCCCEEEEEecCC-cEEE--EeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCCEEEEEe
Q 001366         1005 HTNEKNFVGLSTADGYIACGSESN-EVYA--YHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAAN 1081 (1092)
Q Consensus      1005 h~~~V~~v~~spdg~~lasgs~Dg-~I~I--wd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~~Lasgs 1081 (1092)
                      +........|+|++..++..+.++ ...+  ++...+...                ...+.......+|+|||+.|+-.+
T Consensus       169 ~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         169 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ----------------VLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE----------------ECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccceeEEEeecCCceeeeEeecccccce----------------EeecCccccceEECCCCCEEEEEE
Confidence            555667789999999888776543 3444  443332211                112234467789999999887544


Q ss_pred             c---CCeEEEEEc
Q 001366         1082 S---SGCIKVLQM 1091 (1092)
Q Consensus      1082 ~---DG~V~vW~l 1091 (1092)
                      .   ...|.+|++
T Consensus       233 ~~~~~~~l~~~~~  245 (269)
T d2hqsa1         233 SQGMGSVLNLVST  245 (269)
T ss_dssp             EETTEEEEEEEET
T ss_pred             cCCCCcEEEEEEC
Confidence            3   234666654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.65  E-value=4.7e-06  Score=92.82  Aligned_cols=251  Identities=8%  Similarity=0.070  Sum_probs=140.7

Q ss_pred             CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeec--cCccEEEEEEecCCCCE--EEEEe-CCCcEEEEec
Q 001366          827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIE--HEKRAWSVDFSQVHPTK--LASGS-DDCSVKLWNI  901 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~--h~~~V~sv~fsp~~~~~--laSgs-~Dg~I~iWDl  901 (1092)
                      ....++-|+|+++ +++|.+++. +.+..|.+.....+.....  .......+.+++ +++.  ++++. ..++|..+.+
T Consensus        38 ~~~~~s~la~s~d-~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTFDHE-RKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTT-SSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEEcCC-CCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEc
Confidence            3555677999998 777777654 5677777654322222211  223345666676 5543  22222 2344444433


Q ss_pred             CCC------------ce----eeeE--ecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcce--EE--ecCCCCC
Q 001366          902 NEK------------NS----LATI--KNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPW--CV--LAGHEKA  959 (1092)
Q Consensus       902 ~~~------------~~----l~~l--~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~--~~--l~~H~~~  959 (1092)
                      ...            ..    ....  .....+.++.|+|+|..++++......|.+|+........  ..  .......
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g  194 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc
Confidence            211            11    1111  1233578999999998666666666789999876433211  11  1223457


Q ss_pred             eEEEEEc-CCCEEE-EEECCCeEEEEEcCCCCCCCCCCCceeEEEc--------------CCCCCeEEEEEecCCCEEEE
Q 001366          960 VSYVKFL-DSGTLV-TASTDNKLKLWDLKRTSHTGPSTNACSLTFS--------------GHTNEKNFVGLSTADGYIAC 1023 (1092)
Q Consensus       960 V~~v~fs-~~~~L~-Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~--------------~h~~~V~~v~~spdg~~las 1023 (1092)
                      ...+.|+ ++.+++ +...+++|.+|++.......   ......+.              .+......+.++|+|++|++
T Consensus       195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP---VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             eEEEEECCCCceEEEeccCCCEEEEEEecCCCceE---EEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence            8899998 555554 55578999999997432100   00011110              11223456899999998876


Q ss_pred             Ee-cCC-----cEEEEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeC-CCCEEEEEe-cCCeEEEEEc
Q 001366         1024 GS-ESN-----EVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRR-RSDMVVAAN-SSGCIKVLQM 1091 (1092)
Q Consensus      1024 gs-~Dg-----~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~sp-d~~~Lasgs-~DG~V~vW~l 1091 (1092)
                      +. .+.     .|..|.......+.....        .......+.....++++| +|++|++++ .++.|.||++
T Consensus       272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~--------~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRDCGSIEKQLF--------LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEE--------EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             EcccCCCccceEEEEEEecCCCceeeEeE--------eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            64 222     366776654333322210        001112234467799998 789887775 5699999975

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.65  E-value=6.5e-06  Score=87.80  Aligned_cols=241  Identities=11%  Similarity=0.091  Sum_probs=158.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEE-ECCCcEEEEECC
Q 001366          781 VICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASA-DYDGVVKLWDAC  859 (1092)
Q Consensus       781 ~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSg-s~DgtV~IWD~~  859 (1092)
                      .-..|+++++|+++++-..++.|++||.+........  ......+....-..+++.++.+..+++. +.++.|..++. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFG--ECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEEC--CBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEec--ccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence            3578999999999988888899999986541100000  0000001112334566666545555544 34567777775 


Q ss_pred             CCceEEEee-ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe---cCCceEEEEEccCCCeEEEEEECC
Q 001366          860 TGQTVSHYI-EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK---NIANVCCVQFSAHSSHLLAFGSAD  935 (1092)
Q Consensus       860 tg~~i~~l~-~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~---~~~~V~sl~fsp~~~~~latgs~D  935 (1092)
                      .+.....+. ........+++.+ ++.++++....+.+.++|.. ++.+.++.   +......+++.+++ +++++....
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~~  177 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRA  177 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGG
T ss_pred             cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeeccce-eEEeeeccc
Confidence            566666653 3345678899988 78888887777888888865 56666664   33567889999988 588888889


Q ss_pred             CeEEEEEcCCCCcceEEe--cCCCCCeEEEEEc-CCCEEEEEEC-CCeEEEEEcCCCCCCCCCCCceeEEEcC--CCCCe
Q 001366          936 YRTYCYDLRNARAPWCVL--AGHEKAVSYVKFL-DSGTLVTAST-DNKLKLWDLKRTSHTGPSTNACSLTFSG--HTNEK 1009 (1092)
Q Consensus       936 g~I~vwDlr~~~~~~~~l--~~H~~~V~~v~fs-~~~~L~Sgs~-Dg~I~vWDl~~~~~~~~~~~~~~~~l~~--h~~~V 1009 (1092)
                      +.|++||....  .+..+  .++......|++. +++.+++-+. ++.|.+|+..         +..+.++..  .....
T Consensus       178 ~~V~~~d~~G~--~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~---------G~~~~~~~~~~~~~~p  246 (279)
T d1q7fa_         178 HCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD---------GQLISALESKVKHAQC  246 (279)
T ss_dssp             TEEEEEETTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT---------SCEEEEEEESSCCSCE
T ss_pred             cceeeeecCCc--eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC---------CCEEEEEeCCCCCCCE
Confidence            99999997542  23444  2345567889997 5555555443 4469999854         445555543  23457


Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEeCCCCC
Q 001366         1010 NFVGLSTADGYIACGSESNEVYAYHRSLPM 1039 (1092)
Q Consensus      1010 ~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~ 1039 (1092)
                      ..|++.++|.+++ ++.++.|++|......
T Consensus       247 ~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         247 FDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             eEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            8899999987655 4578999999866443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.59  E-value=3.6e-06  Score=90.97  Aligned_cols=226  Identities=8%  Similarity=0.015  Sum_probs=150.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 001366          781 VICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACT  860 (1092)
Q Consensus       781 ~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~t  860 (1092)
                      .+..++++|||+++++...+++|..|+....         ..........+.+++|.++ ++++++...++.+..|+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---------~~~~~~~~~~~~gla~~~d-G~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHATVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---------EEEEEcCCCCcceEEEcCC-CCeEEEecCCceEEEEEecc
Confidence            5778999999999999999998887775431         1122335678999999998 88888888888888887654


Q ss_pred             Cc-eEEEee--ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-----------cCCceEEEEEccCCC
Q 001366          861 GQ-TVSHYI--EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-----------NIANVCCVQFSAHSS  926 (1092)
Q Consensus       861 g~-~i~~l~--~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-----------~~~~V~sl~fsp~~~  926 (1092)
                      .. ....+.  ........+.+.+ ++.++++-+.++.+..+|...+.......           .......+.++.  .
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~  175 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--N  175 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--T
T ss_pred             cccceeeccccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--C
Confidence            32 222222  2345678999999 88888888888989888888764332221           112356666654  4


Q ss_pred             eEEEEEECCCeEEEEEcCCCCcc--eEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc
Q 001366          927 HLLAFGSADYRTYCYDLRNARAP--WCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS 1003 (1092)
Q Consensus       927 ~~latgs~Dg~I~vwDlr~~~~~--~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~ 1003 (1092)
                      .++++.+..+.|+.+|+......  .... .+......++|. ++..+++...++.|..|+....       ...+....
T Consensus       176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-------~~~~~~~~  247 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-------TTIIAQAE  247 (302)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-------EEEEECGG
T ss_pred             ceeeecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-------EEEEEecC
Confidence            57888888999999998754321  1111 123345678887 6666666777889998876510       01122223


Q ss_pred             CCCCCeEEEEE---ecCCCEEEEEecC
Q 001366         1004 GHTNEKNFVGL---STADGYIACGSES 1027 (1092)
Q Consensus      1004 ~h~~~V~~v~~---spdg~~lasgs~D 1027 (1092)
                      ..-...++++|   ++|++.|..++..
T Consensus       248 ~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         248 QGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            34455789999   6677766655443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.56  E-value=9.9e-06  Score=88.14  Aligned_cols=241  Identities=11%  Similarity=0.112  Sum_probs=147.3

Q ss_pred             EEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          782 ICSISFDRDEDHFAAAGV-------SKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       782 V~sl~fspdg~~latgg~-------D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      .-+++|+++|+++++...       +++|..||..+...  .....+. .......-..++|.++ ++.+++++....|.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~--~~~~~~~-~~~~~g~P~Gl~~~~d-g~~l~vad~~~~i~   95 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVICKPE-VNGYGGIPAGCQCDRD-ANQLFVADMRLGLL   95 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEEECCE-ETTEECCEEEEEECSS-SSEEEEEETTTEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcE--EEEECCc-cccCCCcceeEEEeCC-CCEEEEEECCCeEE
Confidence            345789999998876432       35677777654211  0011110 0011123568999998 77777777777788


Q ss_pred             EEECCCCceEEEeeccC----ccEEEEEEecCCCCEEEEEeC---------------CCcEEEEecCCCceeeeEecCCc
Q 001366          855 LWDACTGQTVSHYIEHE----KRAWSVDFSQVHPTKLASGSD---------------DCSVKLWNINEKNSLATIKNIAN  915 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~h~----~~V~sv~fsp~~~~~laSgs~---------------Dg~I~iWDl~~~~~l~~l~~~~~  915 (1092)
                      ..|...+..........    ...+.+++.+ ++.+.++-..               +|.|..++.. ++.......-..
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~  173 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF  173 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcce
Confidence            88876543221111111    1357899998 7887776432               2233334332 333333333344


Q ss_pred             eEEEEEccCCC----eEEEEEECCCeEEEEEcCCCCcc-----eEEecC-CCCCeEEEEEc-CCCEEEEEECCCeEEEEE
Q 001366          916 VCCVQFSAHSS----HLLAFGSADYRTYCYDLRNARAP-----WCVLAG-HEKAVSYVKFL-DSGTLVTASTDNKLKLWD  984 (1092)
Q Consensus       916 V~sl~fsp~~~----~~latgs~Dg~I~vwDlr~~~~~-----~~~l~~-H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWD  984 (1092)
                      .+.++|+|++.    .++++.+..+.|+.||+......     ...+.+ +......+++. +++.+++....+.|.+||
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            57889998764    35666678899999998644321     112222 22345678887 666667777889999999


Q ss_pred             cCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCC-EEEEEecCCcEEEEeCC
Q 001366          985 LKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADG-YIACGSESNEVYAYHRS 1036 (1092)
Q Consensus       985 l~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~I~Iwd~~ 1036 (1092)
                      ...        +.....+.......++++|.|+++ ++++.+.++.|+.++..
T Consensus       254 p~~--------g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         254 PDG--------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TTC--------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCC--------CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            762        334455655566788999999987 56777788988888764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=9e-06  Score=85.69  Aligned_cols=234  Identities=9%  Similarity=0.010  Sum_probs=148.7

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEEC
Q 001366          780 NVICSISFDRDEDHFAAAG-VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDA  858 (1092)
Q Consensus       780 ~~V~sl~fspdg~~latgg-~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~  858 (1092)
                      ..-.+|+++++|+++++.. ..+.|..++.....       ..............++++++ +.++++....+.+++++.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~gvav~~~-g~i~v~d~~~~~i~~~~~   85 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-------TTVLPFNGLYQPQGLAVDGA-GTVYVTDFNNRVVTLAAG   85 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----C-------EEECCCCSCCSCCCEEECTT-CCEEEEETTTEEEEECTT
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-------EEEeccCCccCceEEEEcCC-CCEEEeeeeeceeeeeee
Confidence            3457899999999776654 44667776654311       00111112234567888887 777777777677777765


Q ss_pred             CCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeee-EecCCceEEEEEccCCCeEEEEEECCCe
Q 001366          859 CTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLAT-IKNIANVCCVQFSAHSSHLLAFGSADYR  937 (1092)
Q Consensus       859 ~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~-l~~~~~V~sl~fsp~~~~~latgs~Dg~  937 (1092)
                      .++..+....+ .....+|++.+ +++++++-.....+..++......... .........++++|++. ++++...++.
T Consensus        86 ~~~~~~~~~~~-~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~~~~  162 (260)
T d1rwia_          86 SNNQTVLPFDG-LNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNR  162 (260)
T ss_dssp             CSCCEECCCCS-CCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEEGGGTE
T ss_pred             ccceeeeeeee-eeecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-Eeeecccccc
Confidence            55554433332 34578999998 778877776777777777765432221 12234567899999885 7788888899


Q ss_pred             EEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEc-CCCCCeEEEEEe
Q 001366          938 TYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFS-GHTNEKNFVGLS 1015 (1092)
Q Consensus       938 I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~s 1015 (1092)
                      |..+|...... .......-.....|++. ++..+++....+.|..++....         ....+. ..-.....|+++
T Consensus       163 i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~---------~~~~~~~~~~~~P~~i~~d  232 (260)
T d1rwia_         163 VVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST---------TSTVLPFTGLNTPLAVAVD  232 (260)
T ss_dssp             EEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS---------CCEECCCCSCCCEEEEEEC
T ss_pred             cccccccccee-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC---------eEEEEccCCCCCeEEEEEe
Confidence            99999875432 22222445667889997 5556666666788888876521         111221 223456789999


Q ss_pred             cCCCEEEEEecCCcEEEEe
Q 001366         1016 TADGYIACGSESNEVYAYH 1034 (1092)
Q Consensus      1016 pdg~~lasgs~Dg~I~Iwd 1034 (1092)
                      ++|.++++-..++.|+.++
T Consensus       233 ~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         233 SDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEEC
T ss_pred             CCCCEEEEECCCCEEEEEe
Confidence            9998888877777777664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.48  E-value=3.1e-05  Score=84.18  Aligned_cols=240  Identities=11%  Similarity=0.079  Sum_probs=151.9

Q ss_pred             CCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCC----CcEEEEecCCC
Q 001366          829 SKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDD----CSVKLWNINEK  904 (1092)
Q Consensus       829 ~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~D----g~I~iWDl~~~  904 (1092)
                      ..+..++|.++ ++++++-..++.|.-||..+++....+.........+++.+ ++.++++...+    +.+...+...+
T Consensus        40 ~~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          40 LQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cCcEeCEECCC-CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence            34568999987 77777777889999999887776666655666788999999 88877765432    33455555554


Q ss_pred             ceeeeEec---CCceEEEEEccCCCeEEEEEEC------CCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEE-EE
Q 001366          905 NSLATIKN---IANVCCVQFSAHSSHLLAFGSA------DYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTL-VT  973 (1092)
Q Consensus       905 ~~l~~l~~---~~~V~sl~fsp~~~~~latgs~------Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L-~S  973 (1092)
                      ........   ....+.+++.++|. +.++...      .+.++.++....  .+..+...-.....|+|+ +++.| ++
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~--~~~~~~~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc--eeEEEeeccceeeeeeeccccceEEEe
Confidence            44333332   23578899999995 5554322      234555554432  222222223346789998 55555 55


Q ss_pred             EECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCC
Q 001366          974 ASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPIS 1053 (1092)
Q Consensus       974 gs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~ 1053 (1092)
                      -+..+.|..||+..........................+++..+|.+.++....+.|.+|+. .++.+..+.+..     
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~-----  268 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG-----  268 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT-----
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC-----
Confidence            56788999999874221100000011111111222457899999998888888999999995 688888776421     


Q ss_pred             CccccCCCCCCEEEEEEeCCCCEEEEEec
Q 001366         1054 GKETDDDNGLFVSSVCWRRRSDMVVAANS 1082 (1092)
Q Consensus      1054 ~~~~~~~h~~~V~sva~spd~~~Lasgs~ 1082 (1092)
                         ...++...+++++|.|+...|++...
T Consensus       269 ---~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         269 ---RDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             ---GGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             ---cCCCcCceeeeEEEeCCCCEEEEEcC
Confidence               12244556889999998877766543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.45  E-value=2.8e-05  Score=84.44  Aligned_cols=240  Identities=10%  Similarity=0.075  Sum_probs=148.0

Q ss_pred             CeEEEEEecCCCCEEEEEEC-------CCcEEEEECCCCceEEEeecc----CccEEEEEEecCCCCEEEEEeCCCcEEE
Q 001366          830 KLSCVCWNNYIKNYLASADY-------DGVVKLWDACTGQTVSHYIEH----EKRAWSVDFSQVHPTKLASGSDDCSVKL  898 (1092)
Q Consensus       830 ~V~~v~~sp~~~~~LaSgs~-------DgtV~IWD~~tg~~i~~l~~h----~~~V~sv~fsp~~~~~laSgs~Dg~I~i  898 (1092)
                      ...+++|.++ ++++++...       +|+|..||..+++........    ......+.|.+ +++.++++...+.|..
T Consensus        19 g~EGpa~d~d-G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          19 GAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLV   96 (314)
T ss_dssp             TCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEE
T ss_pred             CCeEeEEeCC-CCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEE
Confidence            4567899997 776665432       467889998887654433211    22356899999 7887888877777888


Q ss_pred             EecCCCceeeeEe-cC----CceEEEEEccCCCeEEEEEEC---------------CCeEEEEEcCCCCcceEEecCCCC
Q 001366          899 WNINEKNSLATIK-NI----ANVCCVQFSAHSSHLLAFGSA---------------DYRTYCYDLRNARAPWCVLAGHEK  958 (1092)
Q Consensus       899 WDl~~~~~l~~l~-~~----~~V~sl~fsp~~~~~latgs~---------------Dg~I~vwDlr~~~~~~~~l~~H~~  958 (1092)
                      +|...+....... ..    ...+.+++.++|. +.++...               +|.|+.++... +  ...+..+-.
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~--~~~~~~~~~  172 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q--MIQVDTAFQ  172 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C--EEEEEEEES
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecC-c--eeEeeCCcc
Confidence            8877543221111 11    1367899999995 5554322               23455555432 2  122222233


Q ss_pred             CeEEEEEc-CCC-----EEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcC-CCCCeEEEEEecCCCEEEEEecCCcEE
Q 001366          959 AVSYVKFL-DSG-----TLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSG-HTNEKNFVGLSTADGYIACGSESNEVY 1031 (1092)
Q Consensus       959 ~V~~v~fs-~~~-----~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~I~ 1031 (1092)
                      ....++|+ +++     .+++-+..+.|..||+.......  .......+.+ +......+++..+|.++++....+.|.
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~--~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE--NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE--EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccc--eeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence            44678886 332     34455677889999876321100  0011112222 222345789999999888888889999


Q ss_pred             EEeCCCCCceeeeeccccCCCCCccccCCCCCCEEEEEEeCCCC-EEEEEecCCeEEEEEc
Q 001366         1032 AYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSD-MVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1032 Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h~~~V~sva~spd~~-~Lasgs~DG~V~vW~l 1091 (1092)
                      +|+...+..+..+..              ....++++||.|+++ +++|.+.+|.|...++
T Consensus       251 ~~dp~~g~~~~~i~~--------------p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         251 VFGPDGGQPKMRIRC--------------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EECTTCBSCSEEEEC--------------SSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EEeCCCCEEEEEEEC--------------CCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            999877766655542              134678999999997 4566677898887764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.44  E-value=4.7e-05  Score=84.41  Aligned_cols=251  Identities=12%  Similarity=0.070  Sum_probs=140.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCC--EEEEEEC-CCcEE
Q 001366          778 SANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKN--YLASADY-DGVVK  854 (1092)
Q Consensus       778 h~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~--~LaSgs~-DgtV~  854 (1092)
                      ....++.|+|+|++++|.++.. +.+..|.+....    .... ............++++++ ++  +++++.+ .++|.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~----~~~~-~~~~~~~~~p~~v~~~~~-~~~~~v~~a~~~~~~v~  110 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPT----EIVH-EASHPIGGHPRANDADTN-TRAIFLLAAKQPPYAVY  110 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETT----EEEE-EEEEECCSSGGGGCTTSC-CEEEEEEECSSTTCCEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC----CeEE-EeeecCCCCcEEEEECCC-CCEEEEEEecCCCCEEE
Confidence            3445667999999999887764 578888776411    0000 011111223345555665 33  2333222 34555


Q ss_pred             EEECCC-C------------ce---EEEe-eccCccEEEEEEecCCCCEEEEEeC-CCcEEEEecCCCceee---eEe--
Q 001366          855 LWDACT-G------------QT---VSHY-IEHEKRAWSVDFSQVHPTKLASGSD-DCSVKLWNINEKNSLA---TIK--  911 (1092)
Q Consensus       855 IWD~~t-g------------~~---i~~l-~~h~~~V~sv~fsp~~~~~laSgs~-Dg~I~iWDl~~~~~l~---~l~--  911 (1092)
                      .+.+.. +            ..   .... ......+.++.|+| +++++++++. ...|.+|+......+.   .+.  
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~  189 (365)
T d1jofa_         111 ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAP  189 (365)
T ss_dssp             EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred             EeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeec
Confidence            444321 1            11   1110 11123478999999 8887776653 4578888765433222   122  


Q ss_pred             -cCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceE-E---ec--------------CCCCCeEEEEEc-CCCEE
Q 001366          912 -NIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC-V---LA--------------GHEKAVSYVKFL-DSGTL  971 (1092)
Q Consensus       912 -~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~-~---l~--------------~H~~~V~~v~fs-~~~~L  971 (1092)
                       .......++|+|++..+.++.-.++.|.+||+........ .   ..              .+......+.++ ++++|
T Consensus       190 ~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l  269 (365)
T d1jofa_         190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEE
Confidence             3457899999999986667777899999999876542111 1   00              112235577888 66777


Q ss_pred             EEEEC-C-----CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEec-CCCEEEEE-ecCCcEEEEeCCCC
Q 001366          972 VTAST-D-----NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLST-ADGYIACG-SESNEVYAYHRSLP 1038 (1092)
Q Consensus       972 ~Sgs~-D-----g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasg-s~Dg~I~Iwd~~~~ 1038 (1092)
                      +++.. +     +.|..|++.......  ....+..........+.++++| +|++|+++ ..++.|.||+++..
T Consensus       270 yvsnr~~~~~~~~~i~~~~~~~~g~~~--~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         270 FASSRANKFELQGYIAGFKLRDCGSIE--KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEE--EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEcccCCCccceEEEEEEecCCCcee--eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            66532 2     237778876321100  0001111112233456799998 78877655 57899999986544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.39  E-value=0.00012  Score=79.47  Aligned_cols=229  Identities=10%  Similarity=-0.013  Sum_probs=142.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC----CcEE
Q 001366          779 ANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD----GVVK  854 (1092)
Q Consensus       779 ~~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D----gtV~  854 (1092)
                      ...+..++|+++|+++++-...++|..|+.....       ..............+++.++ ++++++...+    +.|.
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~-------~~~~~~~~~~~p~gla~~~d-G~l~va~~~~~~~~~~i~  110 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-------IKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIF  110 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-------EEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEE
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCe-------EEEEEeCCCCCeeEEEECCC-CCEEEEecCCCccceeEE
Confidence            3455679999999988887788888888765411       11122234556789999998 7777765432    3344


Q ss_pred             EEECCCCceEEEeec--cCccEEEEEEecCCCCEEEEEeCC------CcEEEEecCCCceeeeEecCCceEEEEEccCCC
Q 001366          855 LWDACTGQTVSHYIE--HEKRAWSVDFSQVHPTKLASGSDD------CSVKLWNINEKNSLATIKNIANVCCVQFSAHSS  926 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~--h~~~V~sv~fsp~~~~~laSgs~D------g~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~  926 (1092)
                      ..+..++........  -...+..+.+.+ ++.+.++....      +.+..++...+........-...+.++|+|+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~  189 (319)
T d2dg1a1         111 AATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK  189 (319)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred             EEcCCCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccc
Confidence            445544444333321  123478899999 88876664321      234444544332222233334567899999997


Q ss_pred             eEEEEEECCCeEEEEEcCCCCcceEE-------ecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCce
Q 001366          927 HLLAFGSADYRTYCYDLRNARAPWCV-------LAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNAC  998 (1092)
Q Consensus       927 ~~latgs~Dg~I~vwDlr~~~~~~~~-------l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~  998 (1092)
                      .++++-+..+.|+.||+.........       ..........+++. +++..++....+.|.+||-.         +..
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~---------G~~  260 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR---------GYP  260 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT---------SCE
T ss_pred             eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC---------CcE
Confidence            67777788899999998754322111       11112235678887 66677777788999999954         344


Q ss_pred             eEEEc------CCCCCeEEEEEecCCCEEEEEe
Q 001366          999 SLTFS------GHTNEKNFVGLSTADGYIACGS 1025 (1092)
Q Consensus       999 ~~~l~------~h~~~V~~v~~spdg~~lasgs 1025 (1092)
                      +..+.      ++...+++++|.+++..++..+
T Consensus       261 l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         261 IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             EEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            55443      3445678999998876555444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=0.00021  Score=81.78  Aligned_cols=306  Identities=10%  Similarity=0.010  Sum_probs=155.3

Q ss_pred             CCeEEEEEcccceEEeeEEeeeecCCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCCCCCccccccee
Q 001366          753 DGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGV---------SKKIKIFEFNALFNDSVDVYYPAV  823 (1092)
Q Consensus       753 D~~~k~w~~~~~~~~~~l~~~~l~~h~~~V~sl~fspdg~~latgg~---------D~~I~Iwd~~~~~~~~~~~~~~~~  823 (1092)
                      ++.+.+++.........+....+  ..-.+....|+||+++++.+..         .+.+.|||+.+.....+.     .
T Consensus        36 ~g~i~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~-----~  108 (465)
T d1xfda1          36 KGTVRLWNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD-----P  108 (465)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC-----C
T ss_pred             CCcEEEEECCCCCEEEEEcCccc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeecc-----C
Confidence            45566777655443333322222  2235567789999999887643         456788888753211111     0


Q ss_pred             eecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEee-ccCccE-----------------EEEEEecCCCC
Q 001366          824 EMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYI-EHEKRA-----------------WSVDFSQVHPT  885 (1092)
Q Consensus       824 ~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~-~h~~~V-----------------~sv~fsp~~~~  885 (1092)
                      .......+....|+|+ ++.||-.. ++.|.+.+..++..++... +....|                 ..+-|+| |++
T Consensus       109 ~~~~~~~l~~~~wSPD-G~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk  185 (465)
T d1xfda1         109 PEVSNAKLQYAGWGPK-GQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGT  185 (465)
T ss_dssp             TTCCSCCCSBCCBCSS-TTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSS
T ss_pred             ccCCccccceeeeccC-CceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCC
Confidence            1112345666789999 66666654 6788888887776554332 211111                 4677999 888


Q ss_pred             EEEEEeCC-Cc---------------------------------EEEEecCCCceeeeEe-------cCCceEEEEEccC
Q 001366          886 KLASGSDD-CS---------------------------------VKLWNINEKNSLATIK-------NIANVCCVQFSAH  924 (1092)
Q Consensus       886 ~laSgs~D-g~---------------------------------I~iWDl~~~~~l~~l~-------~~~~V~sl~fsp~  924 (1092)
                      .||....| ..                                 +.++|+.++.......       ...-+..+.|+|+
T Consensus       186 ~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d  265 (465)
T d1xfda1         186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS  265 (465)
T ss_dssp             EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred             eEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCC
Confidence            88876532 22                                 3444544332211111       0112678899998


Q ss_pred             CCeEEEEE-ECC---CeEEEEEcCCCCcceEEecCCCCCe----EEEEEc-CCCE--EEEEE-CCC--eEEEEEcCCCCC
Q 001366          925 SSHLLAFG-SAD---YRTYCYDLRNARAPWCVLAGHEKAV----SYVKFL-DSGT--LVTAS-TDN--KLKLWDLKRTSH  990 (1092)
Q Consensus       925 ~~~~latg-s~D---g~I~vwDlr~~~~~~~~l~~H~~~V----~~v~fs-~~~~--L~Sgs-~Dg--~I~vWDl~~~~~  990 (1092)
                      +. +++.. ..+   ..|.++|..+++............|    ....|+ ++..  ++..+ .+|  .+...++.....
T Consensus       266 ~~-~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~  344 (465)
T d1xfda1         266 TK-VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP  344 (465)
T ss_dssp             SE-EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred             Ce-EEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccc
Confidence            85 44443 322   3688899988764322222222222    234565 4443  23233 233  344333321100


Q ss_pred             CCCCCCceeEEEcCCCCCeEEE-EEecCCCEEE-EEecC--CcEEEEeCC--CCCceeeeeccccCCCCCccccCCCCCC
Q 001366          991 TGPSTNACSLTFSGHTNEKNFV-GLSTADGYIA-CGSES--NEVYAYHRS--LPMPITSYKFGSIDPISGKETDDDNGLF 1064 (1092)
Q Consensus       991 ~~~~~~~~~~~l~~h~~~V~~v-~~spdg~~la-sgs~D--g~I~Iwd~~--~~~~i~~~~~~~~~~i~~~~~~~~h~~~ 1064 (1092)
                        ...+..+..+....-.|..+ +|+.+++.|. ++..+  +.-++|.+.  .+.....        ++.   .......
T Consensus       345 --~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~--------lt~---~~~~~~~  411 (465)
T d1xfda1         345 --NSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC--------LSC---DLVENCT  411 (465)
T ss_dssp             --CSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBC--------SST---TSSSSCC
T ss_pred             --cCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCccee--------ecc---ccCCCCC
Confidence              01122223333333445554 6888877554 44332  223344332  1111110        000   0112334


Q ss_pred             EEEEEEeCCCCEEEEEec
Q 001366         1065 VSSVCWRRRSDMVVAANS 1082 (1092)
Q Consensus      1065 V~sva~spd~~~Lasgs~ 1082 (1092)
                      ..++.|||++++++...+
T Consensus       412 ~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         412 YFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             CCEEEECTTSSEEEEECC
T ss_pred             EEEEEECCCCCEEEEEee
Confidence            678999999999885543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.95  E-value=0.0036  Score=66.47  Aligned_cols=220  Identities=9%  Similarity=0.000  Sum_probs=141.2

Q ss_pred             EEEEcCC-CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc
Q 001366          784 SISFDRD-EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ  862 (1092)
Q Consensus       784 sl~fspd-g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~  862 (1092)
                      +..|++. +.++.+--..++|.-||..+..         .........+.++++.++ +.++++ +.+ -|.++|..+++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~---------~~~~~~~~~~~~i~~~~d-g~l~va-~~~-gl~~~d~~tg~   89 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGR---------KTVHALPFMGSALAKISD-SKQLIA-SDD-GLFLRDTATGV   89 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTE---------EEEEECSSCEEEEEEEET-TEEEEE-ETT-EEEEEETTTCC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCe---------EEEEECCCCcEEEEEecC-CCEEEE-EeC-ccEEeecccce
Confidence            3457764 4444454456788888876421         111223567889999886 666654 454 58889999887


Q ss_pred             eEEEeec----cCccEEEEEEecCCCCEEEEEeC----CCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEEC
Q 001366          863 TVSHYIE----HEKRAWSVDFSQVHPTKLASGSD----DCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSA  934 (1092)
Q Consensus       863 ~i~~l~~----h~~~V~sv~fsp~~~~~laSgs~----Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~  934 (1092)
                      .......    ....++++.+.| ++.+.++...    .+.-.+|.+..++....+..-...+.++|++++..++++.+.
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~  168 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTK  168 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             eeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecc
Confidence            5433221    123578999999 7877665443    234567777777655555444567889999999877888888


Q ss_pred             CCeEEEEEcCCCC------c-ceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCC
Q 001366          935 DYRTYCYDLRNAR------A-PWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHT 1006 (1092)
Q Consensus       935 Dg~I~vwDlr~~~------~-~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~ 1006 (1092)
                      .+.|+.|++....      . ......+.......+++. +++..++.-..+.|..||-.         +..+..+.--.
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~---------G~~~~~i~lP~  239 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD---------GNHIARYEVPG  239 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT---------CCEEEEEECSC
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC---------CcEeeEecCCC
Confidence            9999999875321      1 111223345567788887 55555555577889999954         45666666555


Q ss_pred             CCeEEEEEe-cCCCE-EEEEe
Q 001366         1007 NEKNFVGLS-TADGY-IACGS 1025 (1092)
Q Consensus      1007 ~~V~~v~~s-pdg~~-lasgs 1025 (1092)
                      ..+++++|- ++.+. ++|..
T Consensus       240 ~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         240 KQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             SBEEEEEEESTTSCEEEEEEB
T ss_pred             CceEEEEEeCCCCCEEEEEEC
Confidence            678999996 56554 34433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.93  E-value=0.0036  Score=66.43  Aligned_cols=226  Identities=8%  Similarity=-0.022  Sum_probs=140.8

Q ss_pred             EEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe
Q 001366          832 SCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK  911 (1092)
Q Consensus       832 ~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~  911 (1092)
                      -+..|++..+.++.+--..+.|.-||..+++.. .+. ....+.++++.+ ++.++++ +.+ -+.++|..+++......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence            355688764555555446789999999887643 332 345688999988 6666554 455 48899999887543332


Q ss_pred             c-----CCceEEEEEccCCCeEEEEEEC---CCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCE-EEEEECCCeEE
Q 001366          912 N-----IANVCCVQFSAHSSHLLAFGSA---DYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGT-LVTASTDNKLK  981 (1092)
Q Consensus       912 ~-----~~~V~sl~fsp~~~~~latgs~---Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~-L~Sgs~Dg~I~  981 (1092)
                      .     ...++.+.+.|+|..++.+...   .+.-.+|.+..++. .... ..-.....+.|+ +++. +++-+..+.|.
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~-~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-TKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-EEEE-EEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE-EEEe-eccCCcceeeecCCCceEEEeecccceee
Confidence            1     1258899999999633333221   23445666555432 2222 223345788888 4444 45666778899


Q ss_pred             EEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCCCCccccCCC
Q 001366          982 LWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDN 1061 (1092)
Q Consensus       982 vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~~~~h 1061 (1092)
                      .+++..................+.......+++..+|.+.++.-..+.|..|+- .++.+..+.+.              
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP--------------  238 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--------------  238 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--------------
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCC--------------
Confidence            998863211100011111223334455778899999998888777889999994 67788777641              


Q ss_pred             CCCEEEEEEe-CCCCEEEE
Q 001366         1062 GLFVSSVCWR-RRSDMVVA 1079 (1092)
Q Consensus      1062 ~~~V~sva~s-pd~~~Las 1079 (1092)
                      ...++++||- ||.+.|..
T Consensus       239 ~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         239 GKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             CSBEEEEEEESTTSCEEEE
T ss_pred             CCceEEEEEeCCCCCEEEE
Confidence            2358999997 57666643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00079  Score=76.76  Aligned_cols=239  Identities=8%  Similarity=-0.027  Sum_probs=133.6

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEE---------ECCCcEEEE
Q 001366          786 SFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASA---------DYDGVVKLW  856 (1092)
Q Consensus       786 ~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSg---------s~DgtV~IW  856 (1092)
                      .|.+++.++.. ..++.|.+||+.+......-..    ..-..-.+....|+|| +++++..         +..+.+.|+
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~SpD-~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEG----KKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECT----TTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcC----ccccccccceeEECCC-CCeEEEEEcccceeEeeccccEEEE
Confidence            47777776654 4577899999875221100000    0002235677889998 6666554         345788999


Q ss_pred             ECCCCceEEEee--ccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecC--Cc-----------------
Q 001366          857 DACTGQTVSHYI--EHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNI--AN-----------------  915 (1092)
Q Consensus       857 D~~tg~~i~~l~--~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~--~~-----------------  915 (1092)
                      |+.++.......  .....+....|+| +++.+|-.. ++.|.+.+..++..++.....  ..                 
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~  174 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             EccCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccc
Confidence            999886543222  2334566789999 888887765 677888888877655443311  11                 


Q ss_pred             eEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECCCeEEEEEcCCCCCCCCC
Q 001366          916 VCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTDNKLKLWDLKRTSHTGPS  994 (1092)
Q Consensus       916 V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~Dg~I~vWDl~~~~~~~~~  994 (1092)
                      -..+.|+|||..++..-..+..|..+.+....      ......+..+.+. .+..-    ....+.|+|+.......  
T Consensus       175 ~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~------~~~~p~~~~~~Yp~~G~~n----p~~~l~v~d~~~~~~~~--  242 (465)
T d1xfda1         175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYT------GSIYPTVKPYHYPKAGSEN----PSISLHVIGLNGPTHDL--  242 (465)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCS------SSSSCCCEEEECCBTTSCC----CEEEEEEEESSSSCCCE--
T ss_pred             cceEEECCCCCeEEEEEecccccceeeccccc------ccccceeeeeeccccCCCC----CceeEEEEecCCCcEEE--
Confidence            24678999997444433344555555443211      1112234455554 22211    11257788886432100  


Q ss_pred             CCceeEEEcCCCCCeEEEEEecCCCEEEEEec-C---CcEEEEeCCCCCceeee
Q 001366          995 TNACSLTFSGHTNEKNFVGLSTADGYIACGSE-S---NEVYAYHRSLPMPITSY 1044 (1092)
Q Consensus       995 ~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-D---g~I~Iwd~~~~~~i~~~ 1044 (1092)
                      .............-+..+.|++++++++.... +   ..|.++|..+++....+
T Consensus       243 ~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~  296 (465)
T d1xfda1         243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (465)
T ss_dssp             ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             EEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence            00000011122234677899999987665442 2   25788888888755443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=0.035  Score=57.50  Aligned_cols=207  Identities=7%  Similarity=-0.017  Sum_probs=128.2

Q ss_pred             CCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCce
Q 001366          827 NRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNS  906 (1092)
Q Consensus       827 h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~  906 (1092)
                      +...+.+++|....+.++.+-..++.|+..++..+.....+......+.++++....+++.++-...+.|.+.++....+
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            34457889998873444454456688988888766554444433356788888875555666666778999999986554


Q ss_pred             eeeEec-CCceEEEEEccCCCeEEEEEECC--CeEEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEE-EEECCCeEE
Q 001366          907 LATIKN-IANVCCVQFSAHSSHLLAFGSAD--YRTYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLV-TASTDNKLK  981 (1092)
Q Consensus       907 l~~l~~-~~~V~sl~fsp~~~~~latgs~D--g~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~-Sgs~Dg~I~  981 (1092)
                      ...+.. ...+..++++|....++.+-...  ..|.-.++..... .......-.....+++. .++.|+ +-...++|.
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            333333 35688999999887555554332  3355556554332 22333333466788886 556664 445678899


Q ss_pred             EEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeee
Q 001366          982 LWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSY 1044 (1092)
Q Consensus       982 vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~ 1044 (1092)
                      ..|+..        ......+.+.. ....+++. .+.++.+-...+.|...|..+++.+..+
T Consensus       193 ~~~~~g--------~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         193 CLNPAQ--------PGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEETTE--------EEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCC--------CCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            999872        12222233322 34567665 3334455556788999999888766554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.34  E-value=0.013  Score=60.14  Aligned_cols=228  Identities=9%  Similarity=0.029  Sum_probs=116.7

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEE-CCC-----cEEEEE
Q 001366          786 SFDRD--EDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASAD-YDG-----VVKLWD  857 (1092)
Q Consensus       786 ~fspd--g~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs-~Dg-----tV~IWD  857 (1092)
                      ..+||  |+.+|-.+ ++.|.+.|+....        +.....+.+.+...+|+|| ++.||-.+ .++     .|.+++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--------~~~Lt~~~~~~~~p~~SPD-G~~iaf~~~~~~~~~~~~i~~~~   74 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--------TRKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYN   74 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC--------EEEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC--------EEEEecCCCcccCEEECCC-CCEEEEEEeeCCCCCceEEEEEE
Confidence            35688  98887664 4567777876521        1222335667889999999 77776543 222     477778


Q ss_pred             CCCCceEEEee------ccCccEEEEEEecCCCCEEEEEeCC------CcEEEEecCCCceeeeEecCCceEEEEEccCC
Q 001366          858 ACTGQTVSHYI------EHEKRAWSVDFSQVHPTKLASGSDD------CSVKLWNINEKNSLATIKNIANVCCVQFSAHS  925 (1092)
Q Consensus       858 ~~tg~~i~~l~------~h~~~V~sv~fsp~~~~~laSgs~D------g~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~  925 (1092)
                      ..+++......      ..........|+| +++.|+.....      ..+..++...+....  ........ .+.+++
T Consensus        75 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~  150 (281)
T d1k32a2          75 GENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINFVP--LNLGPATH-ILFADG  150 (281)
T ss_dssp             TTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE--CCSCSCSE-EEEETT
T ss_pred             ecCCceEEeeecCCCccCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCceeEE--ecCCccce-eeecCC
Confidence            77775443211      1223456788999 88887765332      224455554433221  11112222 233444


Q ss_pred             CeEEEEEECCC-----------eEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCC--eEEEEEcCCCCCCC
Q 001366          926 SHLLAFGSADY-----------RTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDN--KLKLWDLKRTSHTG  992 (1092)
Q Consensus       926 ~~~latgs~Dg-----------~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg--~I~vWDl~~~~~~~  992 (1092)
                      ...++....+.           ...++......  ......+........+.++..+.....++  .|.++|+...    
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----  224 (281)
T d1k32a2         151 RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA--FKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGK----  224 (281)
T ss_dssp             EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE--EEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSC----
T ss_pred             CeEEEeeccccceeeeeccCCcceeeeeccccc--eeeccCCccccceeeeeccccceecccccccceEEEeCCCC----
Confidence            33333332211           11111111111  11112223334444454443444443333  4667777632    


Q ss_pred             CCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCc
Q 001366          993 PSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMP 1040 (1092)
Q Consensus       993 ~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~ 1040 (1092)
                           ....+..+. ......|+|||+.|+.. .++.|+++|+.+++.
T Consensus       225 -----~~~~lt~~~-~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         225 -----DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI  265 (281)
T ss_dssp             -----SCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE
T ss_pred             -----ceEEeecCC-CcccccCcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence                 122332222 22334689999988764 467899999887764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.06  E-value=0.014  Score=59.68  Aligned_cols=93  Identities=12%  Similarity=-0.013  Sum_probs=59.8

Q ss_pred             EecCC-CCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeC-CC-----cEEEEecCCCceee
Q 001366          836 WNNYI-KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSD-DC-----SVKLWNINEKNSLA  908 (1092)
Q Consensus       836 ~sp~~-~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~-Dg-----~I~iWDl~~~~~l~  908 (1092)
                      .+|+. ++.+|-.+ +|.|.+.|+.+++. ..+..+...+....|+| |++.||-.+. ++     .|.+++..++....
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            34541 44555443 46788889988775 45666777889999999 8888875532 22     36777777765543


Q ss_pred             eEec-------CCceEEEEEccCCCeEEEEE
Q 001366          909 TIKN-------IANVCCVQFSAHSSHLLAFG  932 (1092)
Q Consensus       909 ~l~~-------~~~V~sl~fsp~~~~~latg  932 (1092)
                      ....       ........|+|++. .++..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~-~l~~~  112 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGN-LIIST  112 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCC-EEEEE
T ss_pred             eeecCCCccCccccccccccCCCCC-EEEEE
Confidence            2221       12356789999996 45543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.15  Score=52.52  Aligned_cols=198  Identities=13%  Similarity=0.031  Sum_probs=120.8

Q ss_pred             CCEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEEC
Q 001366          780 NVICSISFDRDEDHFAAA-GVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDA  858 (1092)
Q Consensus       780 ~~V~sl~fspdg~~latg-g~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~  858 (1092)
                      ..+.+|+|++..+.+.-+ ..++.|+..+++....       ..........+.++++..-.+.+..+-...+.|.+.++
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-------~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~  108 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-------EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-------EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEec
Confidence            346779999877655544 4567788887764211       11111223467888887653445455556789999998


Q ss_pred             CCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEE--ecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEECC
Q 001366          859 CTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLW--NINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSAD  935 (1092)
Q Consensus       859 ~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iW--Dl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~D  935 (1092)
                      ....+...+...-..+..+++.|..+.++.+-...+..+||  ++.......... .-.....+++++.+..+..+-...
T Consensus       109 dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~  188 (263)
T d1npea_         109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (263)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCC
Confidence            76554333333346688999999666555554333344454  454333222222 234678999998877666666678


Q ss_pred             CeEEEEEcCCCCcceEEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcC
Q 001366          936 YRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLK  986 (1092)
Q Consensus       936 g~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~  986 (1092)
                      +.|...|+..... ...+.+-. ....|++..+...++-...+.|...|..
T Consensus       189 ~~I~~~~~~g~~~-~~v~~~~~-~P~~lav~~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         189 HRAECLNPAQPGR-RKVLEGLQ-YPFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             TEEEEEETTEEEE-EEEEECCC-SEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEECCCCCe-EEEECCCC-CcEEEEEECCEEEEEECCCCEEEEEECC
Confidence            8999999875432 22333333 3467877644444555567888888887

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.3  Score=50.05  Aligned_cols=207  Identities=9%  Similarity=-0.003  Sum_probs=123.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEE
Q 001366          778 SANVICSISFDRDEDHFAAAG-VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLW  856 (1092)
Q Consensus       778 h~~~V~sl~fspdg~~latgg-~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IW  856 (1092)
                      ....+.+++|++..+.|.-.. .++.|.-.+++....   ..............+.++++....+++..+-...+.|.+.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~---~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~  104 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  104 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCC---CcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeE
Confidence            344567899998777665544 455666666543110   0011111112234466777776546666666677899999


Q ss_pred             ECCCCceEEEeeccCccEEEEEEecCCCCEEEEEe-CCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEEC
Q 001366          857 DACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGS-DDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGSA  934 (1092)
Q Consensus       857 D~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs-~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs~  934 (1092)
                      ++........+.........+++.|..+.++.+-. ..+.|.-.++........+. .-...+.+++++.+..+..+-..
T Consensus       105 ~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~  184 (266)
T d1ijqa1         105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (266)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             ecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCC
Confidence            98766655555555567889999985555555532 33456666665333332232 23567899999988777777778


Q ss_pred             CCeEEEEEcCCCCcce-EEecCCCCCeEEEEEcCCCEEEEEECCCeEEEEEcCC
Q 001366          935 DYRTYCYDLRNARAPW-CVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKR  987 (1092)
Q Consensus       935 Dg~I~vwDlr~~~~~~-~~l~~H~~~V~~v~fs~~~~L~Sgs~Dg~I~vWDl~~  987 (1092)
                      .+.|...|+....... ............|++..+..+++-..++.|...+..+
T Consensus       185 ~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         185 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             cCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCC
Confidence            8999999987543221 1112223346677776544445555778888877663

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.62  E-value=0.51  Score=48.73  Aligned_cols=230  Identities=11%  Similarity=0.079  Sum_probs=143.9

Q ss_pred             EecCCCCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCC-ceeeeEe---
Q 001366          836 WNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEK-NSLATIK---  911 (1092)
Q Consensus       836 ~sp~~~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~-~~l~~l~---  911 (1092)
                      -+|. ...||--+ ..+++|+|+++.+.++.+.- ...|.--.|-.  .+.|+-.. +..|.-|+++.. .+...+.   
T Consensus        70 MhP~-~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          70 MNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             ECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESS--SSEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             cCCC-CcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecC--CCEEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence            4564 55665554 56899999999999988874 45676777764  56666654 467999999543 4555555   


Q ss_pred             --cCCceEEEEEccCCCeEEEEEE------CCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcC----CCEEEEE---EC
Q 001366          912 --NIANVCCVQFSAHSSHLLAFGS------ADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLD----SGTLVTA---ST  976 (1092)
Q Consensus       912 --~~~~V~sl~fsp~~~~~latgs------~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~----~~~L~Sg---s~  976 (1092)
                        ....|..-..+++...++++|=      -.|.+.+|......  -..+.||...-..+....    ...++-+   ..
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE--EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc--CccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence              2345777788888865555442      24778999887543  356778865555554431    1122222   23


Q ss_pred             CCeEEEEEcCCCCCCCCC-CCceeEEEcCC---CCCeEEEEEecCCCEEEEEecCCcEEEEeCCCCCceeeeeccccCCC
Q 001366          977 DNKLKLWDLKRTSHTGPS-TNACSLTFSGH---TNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPI 1052 (1092)
Q Consensus       977 Dg~I~vWDl~~~~~~~~~-~~~~~~~l~~h---~~~V~~v~~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~~~~~i 1052 (1092)
                      .++++|.++......... ..+.+..+...   ..---++..|+.-+.+..-+.-|.|++||+.++..+...+..     
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs-----  296 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS-----  296 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC-----
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecC-----
Confidence            468999999864321111 11111111111   223456778887788888899999999999999999987752     


Q ss_pred             CCccccCCCCCCEEEEEEeCCCCEEEEEecCCeEE
Q 001366         1053 SGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIK 1087 (1092)
Q Consensus      1053 ~~~~~~~~h~~~V~sva~spd~~~Lasgs~DG~V~ 1087 (1092)
                               ...|-.-|-..+..-+++-+.+|.|.
T Consensus       297 ---------~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         297 ---------GETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ---------SSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ---------CCceEEeccCCCCceEEEECCCCeEE
Confidence                     23344444455555566666777654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.05  E-value=0.36  Score=51.51  Aligned_cols=154  Identities=6%  Similarity=-0.014  Sum_probs=86.7

Q ss_pred             EEEcCCCCEEEEEeCCC-----------cEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC-Cc
Q 001366          785 ISFDRDEDHFAAAGVSK-----------KIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD-GV  852 (1092)
Q Consensus       785 l~fspdg~~latgg~D~-----------~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D-gt  852 (1092)
                      .....+|++++.||.+.           .+.+||..+.....    .+.....+..-..+.++.++ +.+++.|+.+ .+
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~----~~~~~~~~~~~~~~~~~~~~-g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD----RTVTVTKHDMFCPGISMDGN-GQIVVTGGNDAKK   99 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC----CEEEECSCCCSSCEEEECTT-SCEEEECSSSTTC
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEee----cCCCCCCcccceeEEEEecC-CcEEEeecCCCcc
Confidence            34456788888888532           36789987522111    11112223333345667777 8888888766 68


Q ss_pred             EEEEECCCCceEEEeecc-CccEEEEEEecCCCCEEEEEeCC------CcEEEEecCCCceeeeEe----------cCC-
Q 001366          853 VKLWDACTGQTVSHYIEH-EKRAWSVDFSQVHPTKLASGSDD------CSVKLWNINEKNSLATIK----------NIA-  914 (1092)
Q Consensus       853 V~IWD~~tg~~i~~l~~h-~~~V~sv~fsp~~~~~laSgs~D------g~I~iWDl~~~~~l~~l~----------~~~-  914 (1092)
                      +.+||..+......-... ...-.+++..+ ++.+++.|+.+      ..+.+||..+.+-.. +.          ... 
T Consensus       100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~  177 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQG  177 (387)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTG
T ss_pred             eeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCCCceee-cCCCcccccccccccc
Confidence            999999877543221111 11123455566 78888888753      368999998764221 11          000 


Q ss_pred             -----ceEEEEEccCCCeEEEEEECCCeEEEEEcCCC
Q 001366          915 -----NVCCVQFSAHSSHLLAFGSADYRTYCYDLRNA  946 (1092)
Q Consensus       915 -----~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~  946 (1092)
                           .-..+...+++ .+++.|..++.+.++|..+.
T Consensus       178 ~~~~~~~~~~~~~~~G-~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         178 LYRSDNHAWLFGWKKG-SVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             GGTTTCSCCEEECGGG-CEEECCSSSEEEEEECSTTC
T ss_pred             eeeccceeEEEEeCCC-CEEEecCcCCcEEecCcccC
Confidence                 01112222344 36666777777777777654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.89  E-value=0.55  Score=53.74  Aligned_cols=33  Identities=12%  Similarity=0.075  Sum_probs=28.3

Q ss_pred             ecCCCEEEEEecCCcEEEEeCCCCCceeeeecc
Q 001366         1015 STADGYIACGSESNEVYAYHRSLPMPITSYKFG 1047 (1092)
Q Consensus      1015 spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~ 1047 (1092)
                      +..+.+|+.|+.|+.++.||..+++.+..++.+
T Consensus       472 ~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~  504 (571)
T d2ad6a1         472 YTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EecCCEEEEECCCCeEEEEECCCCcEEEEEECC
Confidence            335678888999999999999999999998753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.72  E-value=0.27  Score=52.56  Aligned_cols=232  Identities=11%  Similarity=0.019  Sum_probs=115.0

Q ss_pred             EEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC------CcEE
Q 001366          782 ICSISFDRDEDHFAAAGVS-KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD------GVVK  854 (1092)
Q Consensus       782 V~sl~fspdg~~latgg~D-~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D------gtV~  854 (1092)
                      ..+.++.++|.+++.|+.+ .++.+||.....-      .....+.....-.+.+..++ +.+++.++.+      ..+.
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w------~~~~~~~~~r~~~~~~~~~d-G~v~v~GG~~~~~~~~~~v~  150 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW------IPGPDMQVARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGE  150 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE------EECCCCSSCCSSCEEEECTT-SCEEEECCCCCSSSCCCCEE
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcc------cccccccccccccceeeecC-Cceeeeccccccccccceee
Confidence            3456788999999998765 6899999865211      11111111222234455565 7788887643      4689


Q ss_pred             EEECCCCceEEEee---------ccCcc----EEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-------cC-
Q 001366          855 LWDACTGQTVSHYI---------EHEKR----AWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-------NI-  913 (1092)
Q Consensus       855 IWD~~tg~~i~~l~---------~h~~~----V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-------~~-  913 (1092)
                      +||..+.+-...-.         .+...    -....|...++.+++.++.++.+.++|..+......-.       .. 
T Consensus       151 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (387)
T d1k3ia3         151 VYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD  230 (387)
T ss_dssp             EEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC
T ss_pred             eecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcc
Confidence            99988765322100         00000    01112222256777777777777888877654332211       11 


Q ss_pred             -CceEEEEEccCCCeEEEEEECC--------CeEEEEEcCCCCcceEEe------cCCCCCeEEEEEcCCCEEEEEECC-
Q 001366          914 -ANVCCVQFSAHSSHLLAFGSAD--------YRTYCYDLRNARAPWCVL------AGHEKAVSYVKFLDSGTLVTASTD-  977 (1092)
Q Consensus       914 -~~V~sl~fsp~~~~~latgs~D--------g~I~vwDlr~~~~~~~~l------~~H~~~V~~v~fs~~~~L~Sgs~D-  977 (1092)
                       ..-.++.+...+..+++.|+..        ....++++..........      .........+.+.++..++.|+.+ 
T Consensus       231 ~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~  310 (387)
T d1k3ia3         231 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR  310 (387)
T ss_dssp             CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred             cccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCccc
Confidence             1112333333333466666542        133444443221111111      111112234444467788887743 


Q ss_pred             ----------CeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEec
Q 001366          978 ----------NKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSE 1026 (1092)
Q Consensus       978 ----------g~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~ 1026 (1092)
                                .++.+||..+..-      ..+..+..-...-....+.+||+.++.|+.
T Consensus       311 ~~~~~~~~~~~~ve~Ydp~~~~W------~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         311 GIPFEDSTPVFTPEIYVPEQDTF------YKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCTTCCCSBCCCCEEEEGGGTEE------EECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CccCCCCcEeceEEEEECCCCeE------EECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence                      1477898763211      111111100000112346789999988884

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.60  E-value=0.38  Score=52.30  Aligned_cols=238  Identities=11%  Similarity=0.073  Sum_probs=134.8

Q ss_pred             EEEEEECCCcEEEEECCCCceEEEeec----------cCc-----------------------------cEE--EEEEec
Q 001366          843 YLASADYDGVVKLWDACTGQTVSHYIE----------HEK-----------------------------RAW--SVDFSQ  881 (1092)
Q Consensus       843 ~LaSgs~DgtV~IWD~~tg~~i~~l~~----------h~~-----------------------------~V~--sv~fsp  881 (1092)
                      .+.||+..|.|+|+-+.+++.+..+.-          .+.                             ...  .+++.-
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            467888999999999988876665431          000                             000  222221


Q ss_pred             --CCCCEEE-EEeCCCcEEEEecCCCceeeeEe--cCCceEEEEEccCCC-eEEEEEECC------------------Ce
Q 001366          882 --VHPTKLA-SGSDDCSVKLWNINEKNSLATIK--NIANVCCVQFSAHSS-HLLAFGSAD------------------YR  937 (1092)
Q Consensus       882 --~~~~~la-Sgs~Dg~I~iWDl~~~~~l~~l~--~~~~V~sl~fsp~~~-~~latgs~D------------------g~  937 (1092)
                        .||++++ .-..+.+|.+.|+.+.++...+.  ....+..+...++.+ .+++.++.+                  +.
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence              0344544 44478899999999999876554  455667666654332 256555542                  23


Q ss_pred             EEEEEcCCCCcceEEecCCCCCeEEEEEc-CCCEEEEEECC--------------------------------------C
Q 001366          938 TYCYDLRNARAPWCVLAGHEKAVSYVKFL-DSGTLVTASTD--------------------------------------N  978 (1092)
Q Consensus       938 I~vwDlr~~~~~~~~l~~H~~~V~~v~fs-~~~~L~Sgs~D--------------------------------------g  978 (1092)
                      +.++|..+.+..+....+  .....+.++ +++++++.+.+                                      +
T Consensus       175 ~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            667888776543333322  234566776 67777766633                                      1


Q ss_pred             eEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEe-cCCcEEEEeCCCCCceeeeeccccCCCCCccc
Q 001366          979 KLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGS-ESNEVYAYHRSLPMPITSYKFGSIDPISGKET 1057 (1092)
Q Consensus       979 ~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~I~Iwd~~~~~~i~~~~~~~~~~i~~~~~ 1057 (1092)
                      .+.+-|.++..     ....+..+.. ......+.++|||+|+++++ .+.+|-|+|+..-..+.   .+..++......
T Consensus       253 gV~VVD~~~~~-----~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~---~~~~~~~~~~~~  323 (459)
T d1fwxa2         253 GVKVVDGRKEA-----SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF---YENADPRSAVVA  323 (459)
T ss_dssp             TEEEEECSGG-------CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH---HSCC-GGGGEEE
T ss_pred             CceeecccccC-----CcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhh---cccCCccccEEe
Confidence            22333433110     0111111111 12234689999999876655 78999999975322111   011111111111


Q ss_pred             cCCCCCCEEEEEEeCCCCEEEEEecCCeEEEEEc
Q 001366         1058 DDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1058 ~~~h~~~V~sva~spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ....+-.....+|..+|....|---|..|.-|++
T Consensus       324 e~elglgPLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         324 EPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             CCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             ecccCcCccccccCCCceEEEEeeccceEEEEec
Confidence            1223455688899999876666667999999986

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.47  E-value=0.51  Score=51.21  Aligned_cols=233  Identities=14%  Similarity=0.127  Sum_probs=134.5

Q ss_pred             EEEc---CCCCEEEEEe-CCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCC-CCEEEEEECC---------
Q 001366          785 ISFD---RDEDHFAAAG-VSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYI-KNYLASADYD---------  850 (1092)
Q Consensus       785 l~fs---pdg~~latgg-~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~LaSgs~D---------  850 (1092)
                      ++|.   +||+++.+.. .+..|.+-|+......      ..+.......+..+...++. ..+++..+.+         
T Consensus        90 ~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~------kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~  163 (459)
T d1fwxa2          90 MSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCD------AILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT  163 (459)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEE------EEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred             ccccCCccceeEEEEEcCCCceEEEEECcceeee------EEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCc
Confidence            4554   3788777665 6778888888752110      11222334555666654431 4466555542         


Q ss_pred             ---------CcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCC----------------------------
Q 001366          851 ---------GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDD----------------------------  893 (1092)
Q Consensus       851 ---------gtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~D----------------------------  893 (1092)
                               +++..+|..+.+....... ......+++++ +++++++.+.+                            
T Consensus       164 ~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~  241 (459)
T d1fwxa2         164 NMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  241 (459)
T ss_dssp             STTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             cccchhhcceEEEEEecCCceEEEEeee-CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHH
Confidence                     3367789988887666553 33466789999 78887777643                            


Q ss_pred             ----------CcEEEEecCCC---ceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCc----------ce
Q 001366          894 ----------CSVKLWNINEK---NSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARA----------PW  950 (1092)
Q Consensus       894 ----------g~I~iWDl~~~---~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~----------~~  950 (1092)
                                +-+.+-|.+..   ..+..+........+.++|||.+++++|..+.++.|+|+++...          .+
T Consensus       242 av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~  321 (459)
T d1fwxa2         242 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  321 (459)
T ss_dssp             HHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred             hhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE
Confidence                      22455555432   22334444555678899999998888888999999999974221          11


Q ss_pred             EEecCCCCCeEEEEEcCCCEE-EEEECCCeEEEEEcCCCCC--CCCCCCceeEEEcCCCCCeEEE-----EEecCCCEEE
Q 001366          951 CVLAGHEKAVSYVKFLDSGTL-VTASTDNKLKLWDLKRTSH--TGPSTNACSLTFSGHTNEKNFV-----GLSTADGYIA 1022 (1092)
Q Consensus       951 ~~l~~H~~~V~~v~fs~~~~L-~Sgs~Dg~I~vWDl~~~~~--~~~~~~~~~~~l~~h~~~V~~v-----~~spdg~~la 1022 (1092)
                      .......-....-+|...+.. .|---|..|.-|++.....  .+......+..+.-|-+.--..     ...|+|+||+
T Consensus       322 ~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~  401 (459)
T d1fwxa2         322 VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  401 (459)
T ss_dssp             EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             EeecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEE
Confidence            111112223455677744443 3445899999999853100  0000122333444343321111     2367899998


Q ss_pred             EEe
Q 001366         1023 CGS 1025 (1092)
Q Consensus      1023 sgs 1025 (1092)
                      +..
T Consensus       402 ~~n  404 (459)
T d1fwxa2         402 CLS  404 (459)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            875

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.36  E-value=1.9  Score=44.39  Aligned_cols=220  Identities=13%  Similarity=0.177  Sum_probs=135.4

Q ss_pred             CcEEEEECCCCce-EEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEEEEEccCCCeEE
Q 001366          851 GVVKLWDACTGQT-VSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLL  929 (1092)
Q Consensus       851 gtV~IWD~~tg~~-i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~l  929 (1092)
                      ..|.|-|+..... .+.-.    ..-+.-.+| ..+.||.-+ ..++.+||+++...+..+....+|.-=.|-.+.  .|
T Consensus        45 ~~VvIidl~n~~~~~Rrpi----~AdsAIMhP-~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~--~L  116 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI----SADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TV  116 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC----CCSEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSS--EE
T ss_pred             ceEEEEECCCCCcceeccc----chhhhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCC--EE
Confidence            4788899876553 32221    123455677 667776655 568999999999999999988888777787655  44


Q ss_pred             EEEECCCeEEEEEcCCCCcceEEecCCCC----CeEEEEEc-CCCEEEEEE---C----CCeEEEEEcCCCCCCCCCCCc
Q 001366          930 AFGSADYRTYCYDLRNARAPWCVLAGHEK----AVSYVKFL-DSGTLVTAS---T----DNKLKLWDLKRTSHTGPSTNA  997 (1092)
Q Consensus       930 atgs~Dg~I~vwDlr~~~~~~~~l~~H~~----~V~~v~fs-~~~~L~Sgs---~----Dg~I~vWDl~~~~~~~~~~~~  997 (1092)
                      +..+ +..|+-|++.....|...+..|..    .|-.-..+ +.++++..+   .    .|.+.+|.+.+         .
T Consensus       117 ~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er---------~  186 (327)
T d1utca2         117 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---------K  186 (327)
T ss_dssp             EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT---------T
T ss_pred             EEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc---------C
Confidence            4443 557999999766667777776643    23332333 556654322   2    36788999873         4


Q ss_pred             eeEEEcCCCCCeEEEEEecC--C-CEEEEEe---cCCcEEEEeCCCCCc-eeeeeccccCCCCCccccCCCCCCEEEEEE
Q 001366          998 CSLTFSGHTNEKNFVGLSTA--D-GYIACGS---ESNEVYAYHRSLPMP-ITSYKFGSIDPISGKETDDDNGLFVSSVCW 1070 (1092)
Q Consensus       998 ~~~~l~~h~~~V~~v~~spd--g-~~lasgs---~Dg~I~Iwd~~~~~~-i~~~~~~~~~~i~~~~~~~~h~~~V~sva~ 1070 (1092)
                      ..+.+.||......+.+.-+  . ..++.+.   ..+.++|-++..+.. -..+.....+..   .-.+..+++.-++..
T Consensus       187 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~---fppea~~DFPvamqv  263 (327)
T d1utca2         187 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF---FPPEAQNDFPVAMQI  263 (327)
T ss_dssp             EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECC---CCTTCTTCCEEEEEE
T ss_pred             cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEE---CCccccCCcEEEEEe
Confidence            55677888654333322211  1 1333222   235788887654211 111110000000   011234678899999


Q ss_pred             eCCCCEEEEEecCCeEEEEEc
Q 001366         1071 RRRSDMVVAANSSGCIKVLQM 1091 (1092)
Q Consensus      1071 spd~~~Lasgs~DG~V~vW~l 1091 (1092)
                      ++.-.++..-..-|.|++||+
T Consensus       264 s~kygiiyviTK~G~i~lyDl  284 (327)
T d1utca2         264 SEKHDVVFLITKYGYIHLYDL  284 (327)
T ss_dssp             ETTTTEEEEEETTSEEEEEET
T ss_pred             eccCCEEEEEecCcEEEEEEc
Confidence            999999999999999999986

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=1.8  Score=43.82  Aligned_cols=229  Identities=7%  Similarity=-0.033  Sum_probs=131.9

Q ss_pred             CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEEEEECCCCc----eEEEeeccCccEEE
Q 001366          801 KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQ----TVSHYIEHEKRAWS  876 (1092)
Q Consensus       801 ~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~IWD~~tg~----~i~~l~~h~~~V~s  876 (1092)
                      ..|+-.+++...       . .........+.+++|++..+.+..+-..++.|.-.++....    ....+...-..+.+
T Consensus        10 ~~I~~~~l~~~~-------~-~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1          10 HEVRKMTLDRSE-------Y-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             SSEEEEETTSCC-------C-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             CeEEEEECCCCc-------c-eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence            357777776411       1 11123455678899988733344443456667766654321    11222222344667


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEe-cCCceEEEEEccCCCeEEEEEE-CCCeEEEEEcCCCCcceEEec
Q 001366          877 VDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIK-NIANVCCVQFSAHSSHLLAFGS-ADYRTYCYDLRNARAPWCVLA  954 (1092)
Q Consensus       877 v~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~-~~~~V~sl~fsp~~~~~latgs-~Dg~I~vwDlr~~~~~~~~l~  954 (1092)
                      +++.+..+++..+-...++|.+.++........+. .......++++|....++.+.. ..+.|.-.++..... .....
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~~  160 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT  160 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEEC
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-ecccc
Confidence            88877566777777778899999998665544444 3456889999997665555542 345677777754332 22233


Q ss_pred             CCCCCeEEEEEc-CCCEEE-EEECCCeEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEEEEEecCCcEEE
Q 001366          955 GHEKAVSYVKFL-DSGTLV-TASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYA 1032 (1092)
Q Consensus       955 ~H~~~V~~v~fs-~~~~L~-Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~I~I 1032 (1092)
                      ..-.....+++. .++.|+ +-+..+.|...|+....      ...+............+++. .+.++.+-..++.|+.
T Consensus       161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~------~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~  233 (266)
T d1ijqa1         161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN------RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFS  233 (266)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC------EEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEE
Confidence            334567888887 455555 44567889988986311      11122222222334556665 2334444456788888


Q ss_pred             EeCCCCCceeeee
Q 001366         1033 YHRSLPMPITSYK 1045 (1092)
Q Consensus      1033 wd~~~~~~i~~~~ 1045 (1092)
                      .+..++..+..+.
T Consensus       234 ~~~~~g~~~~~~~  246 (266)
T d1ijqa1         234 ANRLTGSDVNLLA  246 (266)
T ss_dssp             EETTTCCCCEEEE
T ss_pred             EECCCCcceEEEE
Confidence            8888777665543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.11  E-value=2.6  Score=47.69  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=29.3

Q ss_pred             EecCCCEEEEEecCCcEEEEeCCCCCceeeeecc
Q 001366         1014 LSTADGYIACGSESNEVYAYHRSLPMPITSYKFG 1047 (1092)
Q Consensus      1014 ~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~~ 1047 (1092)
                      ++..+.+|..|+.||.++.||..+++.+.+++.+
T Consensus       465 l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         465 LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eEECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence            4456778889999999999999999999998753

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.00  E-value=1.7  Score=49.34  Aligned_cols=144  Identities=13%  Similarity=0.117  Sum_probs=85.8

Q ss_pred             CEEEEEECCCcEEEEECCCCceEEEeeccC----ccEEEEEEecCCCCEEEEEe------CCCcEEEEecCCCceeeeEe
Q 001366          842 NYLASADYDGVVKLWDACTGQTVSHYIEHE----KRAWSVDFSQVHPTKLASGS------DDCSVKLWNINEKNSLATIK  911 (1092)
Q Consensus       842 ~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~----~~V~sv~fsp~~~~~laSgs------~Dg~I~iWDl~~~~~l~~l~  911 (1092)
                      ..|+.++.||.+.--|..+|+.+..+....    ..+++--.-. + ..++.+.      .+|.|.-+|+++|+.+..+.
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-C-CeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            467788899999989999999877654211    1111111111 2 3444544      37889999999999998765


Q ss_pred             cCC--------------------------------------ce-EEEEEccCCCeEEEEEEC----------------CC
Q 001366          912 NIA--------------------------------------NV-CCVQFSAHSSHLLAFGSA----------------DY  936 (1092)
Q Consensus       912 ~~~--------------------------------------~V-~sl~fsp~~~~~latgs~----------------Dg  936 (1092)
                      ...                                      .+ ...++++... ++..+..                ..
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g-~~y~~tg~~~p~~~~~r~g~n~~s~  272 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcC-eeeeecccccCcccccccccccccc
Confidence            211                                      11 2245556554 4444433                35


Q ss_pred             eEEEEEcCCCCcceEEecCCCC---------Ce-EEEEEcCCC---EEEEEECCCeEEEEEcCCCC
Q 001366          937 RTYCYDLRNARAPWCVLAGHEK---------AV-SYVKFLDSG---TLVTASTDNKLKLWDLKRTS  989 (1092)
Q Consensus       937 ~I~vwDlr~~~~~~~~l~~H~~---------~V-~~v~fs~~~---~L~Sgs~Dg~I~vWDl~~~~  989 (1092)
                      .+...|+++++..+.....|..         .+ ..+.. +++   .++.++.+|.+.++|..+++
T Consensus       273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~-~g~~~~~v~~~~k~G~l~vlDr~tG~  337 (571)
T d2ad6a1         273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ceeeeeccchhheecccccCccccccccccccceeeeec-cCccccceeeccccceEEEEecCCCc
Confidence            6788899988765443322211         11 12222 332   36678889999999987654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.15  E-value=3  Score=47.46  Aligned_cols=33  Identities=15%  Similarity=0.147  Sum_probs=28.8

Q ss_pred             EecCCCEEEEEecCCcEEEEeCCCCCceeeeec
Q 001366         1014 LSTADGYIACGSESNEVYAYHRSLPMPITSYKF 1046 (1092)
Q Consensus      1014 ~spdg~~lasgs~Dg~I~Iwd~~~~~~i~~~~~ 1046 (1092)
                      ++..|.+|..|+.||.++.||..+++.+.+++.
T Consensus       480 lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eEecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence            345677888899999999999999999999875

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.65  E-value=10  Score=42.74  Aligned_cols=148  Identities=14%  Similarity=0.179  Sum_probs=88.1

Q ss_pred             CCEEEEEECCCcEEEEECCCCceEEEeeccC-ccEEEEEEecC-CCCEEEEEeC------CCcEEEEecCCCceeeeEec
Q 001366          841 KNYLASADYDGVVKLWDACTGQTVSHYIEHE-KRAWSVDFSQV-HPTKLASGSD------DCSVKLWNINEKNSLATIKN  912 (1092)
Q Consensus       841 ~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~-~~V~sv~fsp~-~~~~laSgs~------Dg~I~iWDl~~~~~l~~l~~  912 (1092)
                      +.+|+.++.|+.|.-.|..+|+.+..+.... ..-..+.-.|. ....++.|+.      .|.|+-+|+++|+.+.++..
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            3478889999999999999999888775311 11001111110 1345555543      48899999999999988752


Q ss_pred             CC--------------------------------------c-eEEEEEccCCCeEEEEEEC----------------CCe
Q 001366          913 IA--------------------------------------N-VCCVQFSAHSSHLLAFGSA----------------DYR  937 (1092)
Q Consensus       913 ~~--------------------------------------~-V~sl~fsp~~~~~latgs~----------------Dg~  937 (1092)
                      ..                                      . -...++.+... ++..+..                ...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~-lvy~~tg~~~p~~~~~r~g~n~ys~s  279 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMT  279 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCC-eeeccccccccccccccccccccccc
Confidence            10                                      0 12345555554 4444432                345


Q ss_pred             EEEEEcCCCCcceEEecC-CCC-------CeEEEEE--cCCC---EEEEEECCCeEEEEEcCCCC
Q 001366          938 TYCYDLRNARAPWCVLAG-HEK-------AVSYVKF--LDSG---TLVTASTDNKLKLWDLKRTS  989 (1092)
Q Consensus       938 I~vwDlr~~~~~~~~l~~-H~~-------~V~~v~f--s~~~---~L~Sgs~Dg~I~vWDl~~~~  989 (1092)
                      |...|+++++..++.-.. |..       ....+..  .++.   .++.+..+|.+.++|..+++
T Consensus       280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~  344 (596)
T d1w6sa_         280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA  344 (596)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence            778899998865543322 211       1222222  1333   47778889999999988654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.20  E-value=1.5  Score=49.91  Aligned_cols=59  Identities=12%  Similarity=0.219  Sum_probs=42.1

Q ss_pred             CcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEe
Q 001366          894 CSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVL  953 (1092)
Q Consensus       894 g~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l  953 (1092)
                      |.+.-||+.+++.+..+........-...-.+. ++++|+.|+.++.||.++++.++..-
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagg-lVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCC-EEEEECCCCeEEEEECCCCcEeEEEE
Confidence            357788999999888887544332222222443 77789999999999999998765543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.83  E-value=8.7  Score=40.05  Aligned_cols=134  Identities=7%  Similarity=-0.033  Sum_probs=77.6

Q ss_pred             EEEEEE---CCCcEEEEECCCCc-e---EEEeec-cCccEEEEEEecCCCCEEEEEe--C-------------CCcEEEE
Q 001366          843 YLASAD---YDGVVKLWDACTGQ-T---VSHYIE-HEKRAWSVDFSQVHPTKLASGS--D-------------DCSVKLW  899 (1092)
Q Consensus       843 ~LaSgs---~DgtV~IWD~~tg~-~---i~~l~~-h~~~V~sv~fsp~~~~~laSgs--~-------------Dg~I~iW  899 (1092)
                      +|++..   ...+|.+|++.... .   +.++.. .....++|.+.. ++.+++|-.  .             -++..+|
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            455543   35678888875432 2   222221 123468888887 777777731  1             1233444


Q ss_pred             ecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceE-EecCCCCCeEEEEEc-CCCEEEEEECC
Q 001366          900 NINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWC-VLAGHEKAVSYVKFL-DSGTLVTASTD  977 (1092)
Q Consensus       900 Dl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~-~l~~H~~~V~~v~fs-~~~~L~Sgs~D  977 (1092)
                      ....+........-...+.|+++|+++.++++-+..+.|+.|++........ ....-...+-.+.+. .++.+..++..
T Consensus       192 ~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         192 YYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             EECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred             EEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECC
Confidence            4444444333344466889999999987888888899999999975432111 111123445667765 34555555543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.59  E-value=11  Score=39.97  Aligned_cols=182  Identities=12%  Similarity=0.037  Sum_probs=103.9

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC-----CCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECCCcEE
Q 001366          780 NVICSISFDRDEDHFAAAGVSKKIKIFEFNALF-----NDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVK  854 (1092)
Q Consensus       780 ~~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~-----~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~DgtV~  854 (1092)
                      ...+-++.++..-+|++|+.+ .++|..+....     ........+..   .-..|..++|+.+   .|+.. .++.+.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~---~ip~v~~vafs~d---~l~v~-~~~~l~  108 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK---EIPDVIFVCFHGD---QVLVS-TRNALY  108 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE---ECTTEEEEEEETT---EEEEE-ESSEEE
T ss_pred             cccceEEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceecc---CCCCeEEEEeeCC---EEEEE-eCCCEE
Confidence            345568888877788888877 57788754210     00001111111   1236889999854   45444 456788


Q ss_pred             EEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeee------EecCCceEEEEEccCCCeE
Q 001366          855 LWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLAT------IKNIANVCCVQFSAHSSHL  928 (1092)
Q Consensus       855 IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~------l~~~~~V~sl~fsp~~~~~  928 (1092)
                      .+++.+-........-..++.++.++|   ..++....++.+.++++..++....      +.-...+.|+.|++.|. .
T Consensus       109 ~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk-q  184 (381)
T d1xipa_         109 SLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF-Q  184 (381)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE-E
T ss_pred             EEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcE-E
Confidence            888776554444444556788888876   4677778899999999988764322      22346688888887774 4


Q ss_pred             EEEEECCCeEEEEEcCCCCcceEEecCCCCCeEEEEEcCC-CEEEEE
Q 001366          929 LAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDS-GTLVTA  974 (1092)
Q Consensus       929 latgs~Dg~I~vwDlr~~~~~~~~l~~H~~~V~~v~fs~~-~~L~Sg  974 (1092)
                      ++++..++.-.--++..... +.........|.+|.|... .+++.-
T Consensus       185 ~v~~~g~~~q~k~~i~~~~~-~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         185 SFAWRNGEMEKQFEFSLPSE-LEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEETTEEEEEEEECCCHH-HHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEeCCCceeeccCCCCccc-cCCCcCCCcceeEEEEecCceEEEEE
Confidence            55554332111112221110 0000123346889999844 344433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.20  E-value=3.7  Score=46.52  Aligned_cols=60  Identities=12%  Similarity=0.134  Sum_probs=44.8

Q ss_pred             CcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEec
Q 001366          894 CSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLA  954 (1092)
Q Consensus       894 g~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l~  954 (1092)
                      |.|.-+|+.+++.+.......++.+-..+-.+. ++++|+.||.++.||..+++.++..-.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCC-eEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            578889999999998887555444322333454 777899999999999999997665543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.97  E-value=14  Score=39.35  Aligned_cols=239  Identities=19%  Similarity=0.182  Sum_probs=116.8

Q ss_pred             EEEEEEcCCCCEEEEEeC-C----CcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEecCCCCEEEEEECC------
Q 001366          782 ICSISFDRDEDHFAAAGV-S----KKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYD------  850 (1092)
Q Consensus       782 V~sl~fspdg~~latgg~-D----~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~LaSgs~D------  850 (1092)
                      +..++++|+++++|.+-. .    -.|+++|+.+...  +    +....  ......++|.++ +..|+-...|      
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~--~----~~~i~--~~~~~~~~W~~D-~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE--L----PDVLE--RVKFSCMAWTHD-GKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE--E----EEEEE--EECSCCEEECTT-SSEEEEEECCCCSSCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCccee--c----ccccc--cccccceEEcCC-CCEEEEEEeccccCcc
Confidence            344678899998885432 2    3588999876321  1    11110  112356889998 5544433322      


Q ss_pred             ----------CcEEEEECCCCc--eEEEeeccCc--cEEEEEEecCCCCEEEEEe---CCCcEEEE--ecCCCce-----
Q 001366          851 ----------GVVKLWDACTGQ--TVSHYIEHEK--RAWSVDFSQVHPTKLASGS---DDCSVKLW--NINEKNS-----  906 (1092)
Q Consensus       851 ----------gtV~IWD~~tg~--~i~~l~~h~~--~V~sv~fsp~~~~~laSgs---~Dg~I~iW--Dl~~~~~-----  906 (1092)
                                ..|..|.+.+..  ....+.....  .+..+..+. ++..++...   .+....+|  |+.....     
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~  276 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccccc
Confidence                      257888887763  3344444333  355666777 666654322   23334444  5443211     


Q ss_pred             ---eeeEecCCceEEEEEccCCCeEEEEEE---CCCeEEEEEcCCCCc-ceEE-ecCCCCCeEEEEEc-CCCEEEEE-EC
Q 001366          907 ---LATIKNIANVCCVQFSAHSSHLLAFGS---ADYRTYCYDLRNARA-PWCV-LAGHEKAVSYVKFL-DSGTLVTA-ST  976 (1092)
Q Consensus       907 ---l~~l~~~~~V~sl~fsp~~~~~latgs---~Dg~I~vwDlr~~~~-~~~~-l~~H~~~V~~v~fs-~~~~L~Sg-s~  976 (1092)
                         ...+...........+..+ .+++...   .++.|...++.+... .+.. +..+...+..-.+. .+++|+.. ..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~  355 (430)
T d1qfma1         277 LKWVKLIDNFEGEYDYVTNEGT-VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH  355 (430)
T ss_dssp             CCCEEEECSSSSCEEEEEEETT-EEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred             cceeEeecccccceEEEecCCc-eeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEc
Confidence               1112221222222222222 3444333   246777778776532 2233 33455545433333 45566544 45


Q ss_pred             CC--eEEEEEcCCCCCCCCCCCceeEEEcCCCCCeEEEEEecCCCEE-EE-Ee--cCCcEEEEeCCCCC
Q 001366          977 DN--KLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYI-AC-GS--ESNEVYAYHRSLPM 1039 (1092)
Q Consensus       977 Dg--~I~vWDl~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-as-gs--~Dg~I~Iwd~~~~~ 1039 (1092)
                      ++  .|++++....        ..........+.+..+...++...+ ++ .|  .=.+++-||+.+++
T Consensus       356 ~~~~~l~v~~~~~~--------~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         356 DVKNTLQLHDLATG--------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             TTEEEEEEEETTTC--------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEeEEEEEECCCC--------cEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            54  4788888732        2222222223334434334444322 22 22  22678888877664

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=88.78  E-value=2.7  Score=47.50  Aligned_cols=59  Identities=14%  Similarity=0.166  Sum_probs=43.7

Q ss_pred             CcEEEEecCCCceeeeEecCCceEEEEEccCCCeEEEEEECCCeEEEEEcCCCCcceEEe
Q 001366          894 CSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVL  953 (1092)
Q Consensus       894 g~I~iWDl~~~~~l~~l~~~~~V~sl~fsp~~~~~latgs~Dg~I~vwDlr~~~~~~~~l  953 (1092)
                      |.+.-||+.+++.+..+.......+-.+.-.+. ++++|+.||.++.||..+++.++..-
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCC-EEEEECCCCcEEEEECCCCcEeEEEE
Confidence            568889999999998887554443322333343 77789999999999999998765543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.39  E-value=18  Score=38.45  Aligned_cols=202  Identities=9%  Similarity=0.041  Sum_probs=107.4

Q ss_pred             eEEEEEecCCCCEEE-EEECCC----cEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCC------------
Q 001366          831 LSCVCWNNYIKNYLA-SADYDG----VVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDD------------  893 (1092)
Q Consensus       831 V~~v~~sp~~~~~La-Sgs~Dg----tV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~D------------  893 (1092)
                      +..++++|+ ++++| +-+.+|    +|+++|+.+++.+..--. ......+.|.+ ++..|+-...|            
T Consensus       127 ~~~~~~Spd-~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         127 LRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCC
T ss_pred             ecceEecCC-CCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcC-CCCEEEEEEeccccCcccccccc
Confidence            345567888 55544 544444    799999999986642211 11225788998 66655443322            


Q ss_pred             ----CcEEEEecCCCcee--eeEec---CCceEEEEEccCCCeEEEEEEC--CC--eEEEEEcCCCCc-------ceEEe
Q 001366          894 ----CSVKLWNINEKNSL--ATIKN---IANVCCVQFSAHSSHLLAFGSA--DY--RTYCYDLRNARA-------PWCVL  953 (1092)
Q Consensus       894 ----g~I~iWDl~~~~~l--~~l~~---~~~V~sl~fsp~~~~~latgs~--Dg--~I~vwDlr~~~~-------~~~~l  953 (1092)
                          ..|..|.+.+...-  ..+..   ...+..+..++++..+++....  +.  .+.+.|+.....       .....
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  283 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI  283 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEee
Confidence                25777887765332  23332   2346778889998755554432  23  355556654321       11222


Q ss_pred             cCCCCCeEEEEEcCCCEEEEEE---CCCeEEEEEcCCCCCCCCCCCceeEEEc-CCCCCeEEEEEecCCCEEEEE-ecCC
Q 001366          954 AGHEKAVSYVKFLDSGTLVTAS---TDNKLKLWDLKRTSHTGPSTNACSLTFS-GHTNEKNFVGLSTADGYIACG-SESN 1028 (1092)
Q Consensus       954 ~~H~~~V~~v~fs~~~~L~Sgs---~Dg~I~vWDl~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasg-s~Dg 1028 (1092)
                      ......+..+....+.+++...   .++.|...++.....      .....+- .+...+..-.++..+.+|+.. -.++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~------~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~  357 (430)
T d1qfma1         284 DNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE------SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (430)
T ss_dssp             CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCG------GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             cccccceEEEecCCceeecccCcccccceeEEecCCCCcc------ccceEEecccCcceeeeEEEEECCEEEEEEEcCC
Confidence            3333334443332333333332   346677777764321      1112333 344455555566555566544 4554


Q ss_pred             --cEEEEeCCCCCce
Q 001366         1029 --EVYAYHRSLPMPI 1041 (1092)
Q Consensus      1029 --~I~Iwd~~~~~~i 1041 (1092)
                        .|++++...+...
T Consensus       358 ~~~l~v~~~~~~~~~  372 (430)
T d1qfma1         358 KNTLQLHDLATGALL  372 (430)
T ss_dssp             EEEEEEEETTTCCEE
T ss_pred             EeEEEEEECCCCcEE
Confidence              5788988776643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.18  E-value=19  Score=38.80  Aligned_cols=59  Identities=10%  Similarity=0.010  Sum_probs=37.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCCCCccccccee-eecCCCCeEEEEEecC
Q 001366          781 VICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAV-EMSNRSKLSCVCWNNY  839 (1092)
Q Consensus       781 ~V~sl~fspdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~  839 (1092)
                      .-.+|+|.|||++|++--.+|+|++++........+....... ..........|+++|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4568999999999988755789998876542211111111111 1123467889999985

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=85.07  E-value=25  Score=36.61  Aligned_cols=188  Identities=9%  Similarity=0.120  Sum_probs=110.5

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCCCCCcccccceeeecCCCCeEEEEEec----CC-CCEEEEEE-CC---CcEEEEECC
Q 001366          789 RDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNN----YI-KNYLASAD-YD---GVVKLWDAC  859 (1092)
Q Consensus       789 pdg~~latgg~D~~I~Iwd~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp----~~-~~~LaSgs-~D---gtV~IWD~~  859 (1092)
                      |+..+++.....+-|.+||++....   .       ....+.++.|..-.    .+ ..-++.++ .+   .+|.+|.+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l---~-------~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id  107 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKML---H-------SYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEE---E-------ECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEE---E-------ecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEec
Confidence            3456777777777799999875211   1       11235566555331    11 11233443 32   368888875


Q ss_pred             C-CceEEEeecc-------CccEEEEEE--ecCCCCE-EEEEeCCCcEEEEecC---CC----ceeeeEecCCceEEEEE
Q 001366          860 T-GQTVSHYIEH-------EKRAWSVDF--SQVHPTK-LASGSDDCSVKLWNIN---EK----NSLATIKNIANVCCVQF  921 (1092)
Q Consensus       860 t-g~~i~~l~~h-------~~~V~sv~f--sp~~~~~-laSgs~Dg~I~iWDl~---~~----~~l~~l~~~~~V~sl~f  921 (1092)
                      . ...+..+...       ...+..+++  ++.++.+ ++....+|.+..|.+.   .+    +.++++.....+..|.+
T Consensus       108 ~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVv  187 (353)
T d1h6la_         108 GKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAA  187 (353)
T ss_dssp             TTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEE
T ss_pred             CcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEE
Confidence            3 3344444321       124667777  5545554 5666678999888773   22    34556777888999999


Q ss_pred             ccCCCeEEEEEECCCeEEEEEcCCC--C--cceEEecC--CCCCeEEEEEc---C-CCEEE-EEECCCeEEEEEcCC
Q 001366          922 SAHSSHLLAFGSADYRTYCYDLRNA--R--APWCVLAG--HEKAVSYVKFL---D-SGTLV-TASTDNKLKLWDLKR  987 (1092)
Q Consensus       922 sp~~~~~latgs~Dg~I~vwDlr~~--~--~~~~~l~~--H~~~V~~v~fs---~-~~~L~-Sgs~Dg~I~vWDl~~  987 (1092)
                      ..... .|..+-.+..|+.++..-.  .  ..+....+  ....+-.|+..   + .++|+ |.-.+++..|||...
T Consensus       188 Dde~~-~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         188 DDEYG-SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             ETTTT-EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             eCCCC-cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            98875 6777777877777776522  1  11212222  35567777753   2 33554 444788999999873

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.81  E-value=1.2  Score=50.77  Aligned_cols=82  Identities=15%  Similarity=0.227  Sum_probs=59.3

Q ss_pred             CCcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCce--EEEEEccCCCe
Q 001366          850 DGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANV--CCVQFSAHSSH  927 (1092)
Q Consensus       850 DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V--~sl~fsp~~~~  927 (1092)
                      .|.|.-+|+.+|+.+..+..+. ++++-..+. .+.++++|+.||.++.+|.++|+.+..++....+  .-+.|..+|.+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            4778889999999888876432 232212222 5678888999999999999999999999865433  23667778877


Q ss_pred             EEEEEE
Q 001366          928 LLAFGS  933 (1092)
Q Consensus       928 ~latgs  933 (1092)
                      +++...
T Consensus       543 Yv~i~a  548 (582)
T d1flga_         543 YLGVTV  548 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            766543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.74  E-value=6.1  Score=39.21  Aligned_cols=102  Identities=14%  Similarity=0.127  Sum_probs=48.6

Q ss_pred             eEEEEEECC-----CeEEEEEcCCCCcceEEecC--CCCCeEEEEEcCCCEEEEEECC-----CeEEEEEcCCCCCCCCC
Q 001366          927 HLLAFGSAD-----YRTYCYDLRNARAPWCVLAG--HEKAVSYVKFLDSGTLVTASTD-----NKLKLWDLKRTSHTGPS  994 (1092)
Q Consensus       927 ~~latgs~D-----g~I~vwDlr~~~~~~~~l~~--H~~~V~~v~fs~~~~L~Sgs~D-----g~I~vWDl~~~~~~~~~  994 (1092)
                      .+++.|+.+     ..+..||..+...  .....  ......++....+..++.|+.+     ..+..+|..+..     
T Consensus       150 ~~~~~GG~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~-----  222 (288)
T d1zgka1         150 LLYAVGGFDGTNRLNSAECYYPERNEW--RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET-----  222 (288)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE-----
T ss_pred             cceEecCcccccccceEEEeecccccc--ccccccccccccccccceeeeEEEecCccccccccceeeeeeccee-----
Confidence            456666553     4578888775432  22111  1111223333455556665544     345667765321     


Q ss_pred             CCceeEEEcC-CCCCeEEEEEecCCCEEEEEecCC-----cEEEEeCCCCC
Q 001366          995 TNACSLTFSG-HTNEKNFVGLSTADGYIACGSESN-----EVYAYHRSLPM 1039 (1092)
Q Consensus       995 ~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs~Dg-----~I~Iwd~~~~~ 1039 (1092)
                          ...+.. ......+.+...++++++.|+.++     .|.+||..+.+
T Consensus       223 ----~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         223 ----WTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             ----EEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ----eecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence                111111 111111222334677777777543     37888877643

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=81.87  E-value=0.19  Score=52.81  Aligned_cols=47  Identities=17%  Similarity=0.109  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHhh----hcCccccCCCCCCeEEccCCcEEEeccccccc
Q 001366          332 LYIFRQIVALVDYHH----TQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKE  378 (1092)
Q Consensus       332 ~~i~~qil~~l~~lH----s~gIvHrDLKP~Nill~~~~~vkl~Dfg~~~~  378 (1092)
                      ...+..+...+.-.+    ..||||+|+.|+||+++.++..-++||+.+..
T Consensus       163 ~~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         163 REEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             HHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHHHhhhccCccccccccccCCcchhhhhcccccceeEeccccccc
Confidence            334444444444444    36899999999999998877678999987754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=81.74  E-value=1.4  Score=50.29  Aligned_cols=82  Identities=9%  Similarity=0.102  Sum_probs=57.5

Q ss_pred             CcEEEEECCCCceEEEeeccCccEEEEEEecCCCCEEEEEeCCCcEEEEecCCCceeeeEecCCceEE--EEEccCCCeE
Q 001366          851 GVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCC--VQFSAHSSHL  928 (1092)
Q Consensus       851 gtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp~~~~~laSgs~Dg~I~iWDl~~~~~l~~l~~~~~V~s--l~fsp~~~~~  928 (1092)
                      |.+.-||+.+|+.+..+.... +..+=...- .+.++++|+.|+.++.+|.++|+.+..+.....+..  +.|.-+|.++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            578889999999888776432 211111122 567888999999999999999999999986544322  5566677766


Q ss_pred             EEEEEC
Q 001366          929 LAFGSA  934 (1092)
Q Consensus       929 latgs~  934 (1092)
                      +++.+.
T Consensus       535 v~v~~G  540 (573)
T d1kb0a2         535 VSVAVG  540 (573)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            665543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=80.44  E-value=36  Score=35.23  Aligned_cols=200  Identities=14%  Similarity=0.203  Sum_probs=116.9

Q ss_pred             CCEEEEEECCCcEEEEECCCCceEEEeeccCccEEEEEEec---CCC--CEEEEEe--CC--CcEEEEecCC-CceeeeE
Q 001366          841 KNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQ---VHP--TKLASGS--DD--CSVKLWNINE-KNSLATI  910 (1092)
Q Consensus       841 ~~~LaSgs~DgtV~IWD~~tg~~i~~l~~h~~~V~sv~fsp---~~~--~~laSgs--~D--g~I~iWDl~~-~~~l~~l  910 (1092)
                      .++++.....+-|.+||+ .|+.+..+.  .++++.|+.-.   ..+  ..++.++  .+  .+|.+|.+.. ...+..+
T Consensus        40 ~SlI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GCEEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             ccEEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            567777788878999998 588887765  35666666542   111  2244554  22  3688888853 2333333


Q ss_pred             ec--------CCceEEEEE--ccC-CCeEEEEEECCCeEEEEEcCCCC---c---ceEEecCCCCCeEEEEEc-CCCEEE
Q 001366          911 KN--------IANVCCVQF--SAH-SSHLLAFGSADYRTYCYDLRNAR---A---PWCVLAGHEKAVSYVKFL-DSGTLV  972 (1092)
Q Consensus       911 ~~--------~~~V~sl~f--sp~-~~~~latgs~Dg~I~vwDlr~~~---~---~~~~l~~H~~~V~~v~fs-~~~~L~  972 (1092)
                      ..        ...+..+++  ++. +..++++...+|.+..|.+....   .   .+..+. -...+..+.+. ..+.|+
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEE
Confidence            21        123555665  665 43456777789999888774321   1   223332 23457777777 567888


Q ss_pred             EEECCCeEEEEEcCCCCCCCCCCCceeEEEcC--CCCCeEEEEEec--CC-CEEEEEe-cCCcEEEEeCCCC-Cceeeee
Q 001366          973 TASTDNKLKLWDLKRTSHTGPSTNACSLTFSG--HTNEKNFVGLST--AD-GYIACGS-ESNEVYAYHRSLP-MPITSYK 1045 (1092)
Q Consensus       973 Sgs~Dg~I~vWDl~~~~~~~~~~~~~~~~l~~--h~~~V~~v~~sp--dg-~~lasgs-~Dg~I~Iwd~~~~-~~i~~~~ 1045 (1092)
                      .+-.+.-|..++......   .....+....+  ....+-.+++-.  ++ +||++.| .+++..||+...+ ..+.+++
T Consensus       196 isEE~~Giw~~~a~~~~~---~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         196 IAEEDEAIWKFSAEPDGG---SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEETTTEEEEEESSTTSC---SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EecCccceEEEEeccCCC---ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            888877665555542111   11222222222  345666776543  32 3555544 7899999998764 6777776


Q ss_pred             cc
Q 001366         1046 FG 1047 (1092)
Q Consensus      1046 ~~ 1047 (1092)
                      .+
T Consensus       273 i~  274 (353)
T d1h6la_         273 IT  274 (353)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54