Citrus Sinensis ID: 001379

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090

MNNNNNNNSSSTPNPNANTNNKDSEEDLAAQPVETVIKPDKSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQVPVSLCKYC

cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccEEEEEEEccccccccccccHHHHHcccccHHHccccccEEccccccccccccccccccEEEEEEEcccccccEEEEEEEcccccccEEEEEEcccccccEEEEEEccccEEEEEccccccccccccccccccHHHcccccEEEEEccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEEEEccccEEEEEcccccccccccccEEEcccccccccccccccccEEccccccEEEEEcccccccEEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccEEEccccccccccccEEccccEEEEccccccccEEEEEEEEccccccccccccccccEEEEEEEEcccccEEEEEcccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHEEEcccccEEEEEEEcccEEEEEcccccccccEEEEccccccccccccccccccEEEEccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEcccccccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccccccEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccEEEEcccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEccEEEcHHHHHccccccccccccccccc

ccccccccccccccccccccccccHHcHccccEEEEEcccccccccHHHHHHHHHccccccccccccccccEEEEEEEcccccHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccEEEEEEEEcccccccEEEEEEcccccccEEEEEEcccEEEEEEccccccccEEEEcccHHHHHHHHHHHHHHHHHHccccccEEccccccccccccccHHHHHcccccccccccccEEEEEEEEccccEEEEccccccccccccccEEEccccccccccccHEEEEEEEEccccEEEEEEEcccccEEEEEEEcccccccEEEcccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcHHHHccccccccccccEEEEEEccccccEEEEEEEEEccccccccccccccccccEEEEEccccccEEEEccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHccccccEEEEEEcccEEEEEcccccccccEEEEccccccccccccccccccEEEcccccccEEEEEEEcccccccccccEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEcEEEEEEcccccccccHHHHHHccccHHHEEHHEHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccccccccccEEccccccccccEEEEEccccEEEccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccEEcccHHHEHcccccccccccccccc

mnnnnnnnssstpnpnantnnkdseedlaaqpvetvikpdksdtlsSAAAAEEeasaksddpmdedsvtpATVFCIRlkqprsnlqhkmsvpelcRNFSAVAWCGKLNAIACASetcaripssnantpfwipihiviperptecavfnviadcprdsvqfiewsptscpRALLIANFYGrvtiwtqpshgpanlvrdascwqrEHEWRQDIAVVTKWLsgvspyrwlsskstsplnakSIFEekflsqnsqtsdrwpnflCVCSVfssgsvqlnwsqwppsqngaaskwfptakgllgagpsgimaadviitdsgamhvagvpivnpsTVVVWEvtpgpgngfqaapktttsngvppslsppkwagfapLAAYLFSWQEYLLSEAKQgrkltdqnfsdaitlhcspvsnfsayvspeaaaqsaatttwgsgvtavafdptrggSVIAVVIVEgqymspydpdegpsitgwrvqrwessvqpVVLHqifgnptssfggqapmqtVWVSkvdtsiptsnfkihqlaaagptcdvwkttdsglekskivsfdpfdlpsdiRSLARIVYSAHGGEIAIALLRggvhifsgpnfapvdnyqisvgsaiaapafsstsccsasvwhdtnkdrtILKIIrvlppavpssqvkansSTWERAIAERFWWSLLVnvdwwdavgctqsaaEDGIVSLNSVIAVLdadfhslpsiqhrqqygpsldRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIesalinpsalvpdpwqasgetlsgidpeamAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAvtagtgsnrnmvasptqssatpaasqagqsgttsstgsTQMQAWVQGAIAKIsstndgvsnptsnpisgpssfmpisintgtfpgtpavrlIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANaqrnndanvqkpqvsapgkveeinsvpgkptsamvkldegqvaragqtvpgakgveegpagrpkmgfgnagqgytFEEVKVLFLILMDLCRRtaalshplpvsqvgssniqVRLHYIDGNYTVLPEVveaslgphmqvpvslckyc

mnnnnnnnssstpnpnanTNNKDSEEDLAAQPVEtvikpdksdTLSSAAAAEEeasaksddpmdedSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLekskivsfdpfdlpsDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRvlppavpssqvkanssTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHavtagtgsnrnMVASPTQSSATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLAnaqrnndanvqkpqvsapgkveeinsvpgkpTSAMVKLDegqvaragqtvpgakgveegpagrpkMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALshplpvsqvgssnIQVRLHYIDGNYTVLPEVVEAslgphmqvpvslckyc

MnnnnnnnssstpnpnantnnKDSEEDLAAQPVETVIKPDKSDTLssaaaaeeeasaKSDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVasptqssatpaasqagqsgttsstgstqmqaWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDchflhrlcqlllfcfffrraqqPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQVPVSLCKYC

**********************************************************************ATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLS*************************DRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTP*************************KWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPS**VKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVT************************************************************************PISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQ*************************************************************************FGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQVPVSLC***

*********************************************************************PATVFCIRLKQPR***Q*KMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYR******************************WPNFLCVCSVFSSGSVQLNWSQW*****GAA*KWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTT*******LSPPKWAGFAPLAAYLFSWQEYLLSE***********FSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTS**GGQAPMQTVWVSKVDTSIPTSNFKIHQLAA********************VSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQH**QYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASH******************************************QAWVQGAIAKIS**************SGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPR****************************************************************************GYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQVPVSLCKYC

************************EEDLAAQPVETVIKP****************************VTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVS************WGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPA***********TWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNM****************************QMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQVPVSLCKYC

******************************QP****IKP***************************SVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLS***********************TSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNF***********************KSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVT*****************************************W**************************SSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQ*************************GKPTSAMVKLDEGQVARAGQTVPGAKGV****AGRPKMGF***GQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQVPVSLCKYC

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1090	2.2.26 [Sep-21-2011]
F4JGZ1		1278	Mediator of RNA polymeras	yes	no	0.964	0.822	0.760	0.0

>sp\|F4JGZ1\|MED16_ARATH Mediator of RNA polymerase II transcription subunit 16 OS=Arabidopsis thaliana GN=MED16 PE=1 SV=1	Back alignment and function desciption

 Score = 1615 bits (4181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 824/1084 (76%), Positives = 913/1084 (84%), Gaps = 33/1084 (3%)

Query: 22   KDSEEDLAAQPVETVIKPD------KSDTLSSAAAAEEEASAKSDDPMDEDSVTPATVFC 75
            +  EE L  +  ET+   D      +   L  +   E+E    S   M+ D V+PATVFC
Sbjct: 30   EKEEEGLQQKQEETIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFC 89

Query: 76   IRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHI 135
            ++LKQP SNL HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSS ANTPFWIPIHI
Sbjct: 90   VKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPIHI 149

Query: 136  VIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQPSHGPANLV 195
            +IPERPTECAVFNV+AD PRDSVQFIEWSPTSCPRALLIANF+GR+TIWTQP+ G ANLV
Sbjct: 150  LIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGSANLV 209

Query: 196  RDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFEEKFLSQNSQTSDR 255
             DA+ WQ EHEWRQDIAVVTKWL+G SPYRWLSSK +S  NAKS FEEKFLSQ+S++S R
Sbjct: 210  HDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAKSTFEEKFLSQSSESSAR 269

Query: 256  WPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPSGIMAADVIITDSG 315
            WPNFLCVCSVFSSGSVQ++WSQWP +Q   A KWF T KGLLGAGPSGIMAAD IITDSG
Sbjct: 270  WPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLGAGPSGIMAADAIITDSG 329

Query: 316  AMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLF 375
            AMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W GFAPLAAYLF
Sbjct: 330  AMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSWTGFAPLAAYLF 389

Query: 376  SWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 435
            SWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV
Sbjct: 390  SWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAV 449

Query: 436  AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSF 495
            AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTS+F
Sbjct: 450  AFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSNF 509

Query: 496  GGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLP 554
            GGQ P QTVWVS+VD SI PT +FK HQ+AAAGP+ D  K  DSG EK+  V FDPFDLP
Sbjct: 510  GGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKANKVVFDPFDLP 569

Query: 555  SDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCC 614
            SDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAIAAPAFS TSCC
Sbjct: 570  SDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCC 629

Query: 615  SASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVG 674
            SASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAERFWWSLLV VDWWDAVG
Sbjct: 630  SASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSLLVGVDWWDAVG 689

Query: 675  CTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMV 734
            CTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLEGTNAQEVRAMV
Sbjct: 690  CTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMV 749

Query: 735  LDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYV 794
            LDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+PALV+SIQAYV
Sbjct: 750  LDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVDPALVSSIQAYV 809

Query: 795  DAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQ------ 848
            DAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V SPTQ++++PA  Q      
Sbjct: 810  DAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASSPATPQVFPDKS 869

Query: 849  ----AGQ-------SGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMP 897
                 GQ       + TT+S+GS+ +QAW+QGAIAKISS+NDG SN T++PISG  +FMP
Sbjct: 870  LYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDG-SNSTASPISGSPTFMP 928

Query: 898  ISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQ 957
            ISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCF  R ++ P      QRN D + QK Q
Sbjct: 929  ISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFP------QRNADVSSQKLQ 982

Query: 958  VSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQG 1017
              A  K+EE+NS   KPT A+ ++++ Q  R  Q   G KG++E  A   KMG GNAGQG
Sbjct: 983  TGATSKLEEVNS--AKPTPALNRIEDAQGFRGAQLGTGVKGIDENSARTTKMGSGNAGQG 1040

Query: 1018 YTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLG 1077
            YT+EEV+VLF ILMDLC+RT+ L+HPLP SQVGS NIQVRLHYIDGNYTVLPEVVEA+LG
Sbjct: 1041 YTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVEAALG 1100

Query: 1078 PHMQ 1081
            PHMQ
Sbjct: 1101 PHMQ 1104

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the regulation of the circadian clock, in the control of flowering time, in freezing- and osmotic-stress tolerance and in both salicylic acid- and jasmonate-mediated defense gene expression.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1090
255556001		1255	conserved hypothetical protein [Ricinus	0.988	0.858	0.858	0.0
356546243		1244	PREDICTED: uncharacterized protein LOC10	0.918	0.804	0.836	0.0
449457823		1220	PREDICTED: mediator of RNA polymerase II	0.931	0.831	0.849	0.0
358346665		1245	hypothetical protein MTR_084s0009 [Medic	0.939	0.822	0.809	0.0
224079253		1328	predicted protein [Populus trichocarpa]	0.939	0.771	0.795	0.0
356549357		1189	PREDICTED: uncharacterized protein LOC10	0.927	0.850	0.821	0.0
297809669		1219	hypothetical protein ARALYDRAFT_490126 [	0.955	0.854	0.771	0.0
334186364		1267	sensitive to freezing 6 protein [Arabido	0.963	0.828	0.767	0.0
240255752		1278	sensitive to freezing 6 protein [Arabido	0.964	0.822	0.760	0.0
449526315		1143	PREDICTED: mediator of RNA polymerase II	0.852	0.812	0.839	0.0

>gi\|255556001\|ref\|XP_002519035.1\| conserved hypothetical protein [Ricinus communis] gi\|223541698\|gb\|EEF43246.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1865 bits (4832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 927/1080 (85%), Positives = 985/1080 (91%), Gaps = 2/1080 (0%)

Query: 4    NNNNNSSSTPNPNANTNNKDSEEDLAAQPVETVIKPDKSDT-LSSAAAAEEEASAKSDDP 62
            NN  +  S    +    NK+ EE+   Q +E V K   SD       ++EE++  K DDP
Sbjct: 2    NNQQHQQSQIVGSGTGGNKEPEEESVGQSLEIVAKGAGSDKPAGEPVSSEEDSVEKPDDP 61

Query: 63   MDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS 122
            M+EDSV+PATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS
Sbjct: 62   MEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPS 121

Query: 123  SNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFYGRVT 182
            SNAN PFWIPIHIVIPERPTECAVFNVIAD PRDSVQFIEWSPTSCPRALLIANF+GR+T
Sbjct: 122  SNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRIT 181

Query: 183  IWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAKSIFE 242
            IWTQPS GP N+VRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKS+S  N+KS FE
Sbjct: 182  IWTQPSQGPVNMVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSSSTNSKSTFE 241

Query: 243  EKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLGAGPS 302
            EKFLSQ SQTS RWPNFLCVCSVFSSGSVQL+WSQWPPS+  A  +WF T+KGLLGAGPS
Sbjct: 242  EKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSRTNATPEWFCTSKGLLGAGPS 301

Query: 303  GIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPP 362
            GIMAAD I+TDSGAMHVAGVPIVNPSTVVVWEVTPG G+GFQA PKT+ SNGVPPSL+PP
Sbjct: 302  GIMAADAIVTDSGAMHVAGVPIVNPSTVVVWEVTPGLGHGFQATPKTSISNGVPPSLNPP 361

Query: 363  KWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQS 422
             W+GFAPLAAYLFSWQEYL+SEAKQGRK TDQ+FS+ ++LHCSPVSNFSAYVSPEAAAQS
Sbjct: 362  NWSGFAPLAAYLFSWQEYLISEAKQGRKHTDQDFSNTVSLHCSPVSNFSAYVSPEAAAQS 421

Query: 423  AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPV 482
            AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS+QPV
Sbjct: 422  AATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPV 481

Query: 483  VLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLE 541
            VLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIP T++FK HQ  +AGP  D  K +DSG+E
Sbjct: 482  VLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPPTNDFKNHQTVSAGPAPDARKASDSGVE 541

Query: 542  KSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGS 601
            K+K ++FDPFDLPSD+RSLARIVYSAHGGEIAIA LRGGVHIFSGPNF PVD+YQI+VGS
Sbjct: 542  KAKSLTFDPFDLPSDVRSLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTPVDSYQINVGS 601

Query: 602  AIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWW 661
            AIAAPAFSSTSCCSASVWHDT+KDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWW
Sbjct: 602  AIAAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWW 661

Query: 662  SLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRL 721
            SLLV VDWWDAVGCTQSAAED IVSLNSVIAVLDADFHSLPS QHRQQYGPSLDRIKCRL
Sbjct: 662  SLLVGVDWWDAVGCTQSAAEDNIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRL 721

Query: 722  LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMA 781
            LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVP+PWQASGETLSGIDPEAMA
Sbjct: 722  LEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETLSGIDPEAMA 781

Query: 782  VEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSS 841
            VEP+LV SIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNR+MV SPTQS+
Sbjct: 782  VEPSLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRSMVTSPTQSA 841

Query: 842  ATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISIN 901
            A+PA SQ GQ+GTTSSTGSTQMQAWVQGAIAKISSTNDGVSN T NPISGPSSFMPISIN
Sbjct: 842  ASPATSQGGQNGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNATPNPISGPSSFMPISIN 901

Query: 902  TGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAP 961
            TGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRR Q PR +  AQR+ D N+QKPQ  AP
Sbjct: 902  TGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFIGVAQRSTDTNMQKPQSGAP 961

Query: 962  GKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFE 1021
            GKVEE NSV  KP  AMV+ DE Q AR GQ VPG KGVEEGPAGR ++G+GNAGQGYTFE
Sbjct: 962  GKVEEANSVSSKPAQAMVRSDEVQTARGGQLVPGGKGVEEGPAGRSRLGYGNAGQGYTFE 1021

Query: 1022 EVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQ 1081
            EVKVLFLILMDLCRRTAAL+HPLPVSQVGSSNIQVRLHYI+GNYTVLPEVVEASLGPHMQ
Sbjct: 1022 EVKVLFLILMDLCRRTAALAHPLPVSQVGSSNIQVRLHYINGNYTVLPEVVEASLGPHMQ 1081

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356546243\|ref\|XP_003541539.1\| PREDICTED: uncharacterized protein LOC100793949 [Glycine max]	Back alignment and taxonomy information

>gi\|449457823\|ref\|XP_004146647.1\| PREDICTED: mediator of RNA polymerase II transcription subunit 16-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|358346665\|ref\|XP_003637386.1\| hypothetical protein MTR_084s0009 [Medicago truncatula] gi\|355503321\|gb\|AES84524.1\| hypothetical protein MTR_084s0009 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224079253\|ref\|XP_002305810.1\| predicted protein [Populus trichocarpa] gi\|222848774\|gb\|EEE86321.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356549357\|ref\|XP_003543060.1\| PREDICTED: uncharacterized protein LOC100812938 [Glycine max]	Back alignment and taxonomy information

>gi\|297809669\|ref\|XP_002872718.1\| hypothetical protein ARALYDRAFT_490126 [Arabidopsis lyrata subsp. lyrata] gi\|297318555\|gb\|EFH48977.1\| hypothetical protein ARALYDRAFT_490126 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334186364\|ref\|NP_001190676.1\| sensitive to freezing 6 protein [Arabidopsis thaliana] gi\|332657042\|gb\|AEE82442.1\| sensitive to freezing 6 protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|240255752\|ref\|NP_192401.5\| sensitive to freezing 6 protein [Arabidopsis thaliana] gi\|395406812\|sp\|F4JGZ1.1\|MED16_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 16; AltName: Full=Protein SENSITIVE TO FREEZING 6 gi\|332657041\|gb\|AEE82441.1\| sensitive to freezing 6 protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449526315\|ref\|XP_004170159.1\| PREDICTED: mediator of RNA polymerase II transcription subunit 16-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1090
TAIR\|locus:2135383		1278	SFR6 "AT4G04920" [Arabidopsis	0.930	0.793	0.752	0.0

TAIR\|locus:2135383 SFR6 "AT4G04920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4043 (1428.3 bits), Expect = 0., P = 0.
 Identities = 783/1041 (75%), Positives = 855/1041 (82%)

Query:    59 SDDPMDEDSVTPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCA 118
             S   M+ D V+PATVFC++LKQP SNL HKMSVPELCRNFSAVAWCGKLNAIACASETCA
Sbjct:    73 SSSNMEIDPVSPATVFCVKLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCA 132

Query:   119 RIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPTSCPRALLIANFY 178
             RIPSS ANTPFWIPIHI+IPERPTECAVFNV+AD PRDSVQFIEWSPTSCPRALLIANF+
Sbjct:   133 RIPSSKANTPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFH 192

Query:   179 GRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSTSPLNAK 238
             GR+TIWTQP+ G ANLV DA+ WQ EHEWRQDIAVVTKWL+G SPYRWLSSK +S  NAK
Sbjct:   193 GRITIWTQPTQGSANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSKPSSGTNAK 252

Query:   239 SIFEEKFLSQNSQTSDRWPNFLCVCSVFSSGSVQLNWSQWPPSQNGAASKWFPTAKGLLG 298
             S FEEKFLSQ+S++S RWPNFLCVCSVFSSGSVQ++WSQWP +Q   A KWF T KGLLG
Sbjct:   253 STFEEKFLSQSSESSARWPNFLCVCSVFSSGSVQIHWSQWPSNQGSTAPKWFSTKKGLLG 312

Query:   299 AGPSGIMAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPS 358
             AGPSGIMAAD IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPS
Sbjct:   313 AGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPS 372

Query:   359 LSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEA 418
             LS   W GFAPLAAYLFSWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEA
Sbjct:   373 LSSSSWTGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEA 432

Query:   419 AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS 478
             AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS
Sbjct:   433 AAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS 492

Query:   479 VQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTD 537
             VQPVVLHQIFGNPTS+FGGQ P QTVWVS+VD SIP T +FK HQ+AAAGP+ D  K  D
Sbjct:   493 VQPVVLHQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPD 552

Query:   538 SGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQI 597
             SG EK+  V FDPFDLPSDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI
Sbjct:   553 SGDEKANKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQI 612

Query:   598 SVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAE 657
             +VGSAIAAPAFS TSCCSASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAE
Sbjct:   613 NVGSAIAAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAE 672

Query:   658 RFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRI 717
             RFWWSLLV VDWWDAVGCTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRI
Sbjct:   673 RFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRI 732

Query:   718 KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDP 777
             KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+P
Sbjct:   733 KCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINP 792

Query:   778 EAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVXXX 837
             EAMAV+PALV+SIQAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V   
Sbjct:   793 EAMAVDPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSP 852

Query:   838 XXXXXXXXX-----------------XXXXXXXXXXXXXXXXXXXWVQGAIAKISSTNDG 880
                                                          W+QGAIAKISS+NDG
Sbjct:   853 TQNASSPATPQVFPDKSLYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDG 912

Query:   881 VSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDXXXXXXXXXXXXXXXXXXXXXXPR 940
              SN T++PISG  +FMPISINTGTFPGTPAVRLIGD                      P 
Sbjct:   913 -SNSTASPISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFP- 970

Query:   941 LLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVE 1000
                  QRN D + QK Q  A  K+EE+NS   KPT A+ ++++ Q  R  Q   G KG++
Sbjct:   971 -----QRNADVSSQKLQTGATSKLEEVNSA--KPTPALNRIEDAQGFRGAQLGTGVKGID 1023

Query:  1001 EGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHY 1060
             E  A   KMG GNAGQGYT+EEV+VLF ILMDLC+RT+ L+HPLP SQVGS NIQVRLHY
Sbjct:  1024 ENSARTTKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHY 1083

Query:  1061 IDGNYTVLPEVVEASLGPHMQ 1081
             IDGNYTVLPEVVEA+LGPHMQ
Sbjct:  1084 IDGNYTVLPEVVEAALGPHMQ 1104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0     1090      1005   0.00079  123 3  11 22  0.41    34
                                                     38  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  637 (68 KB)
  Total size of DFA:  520 KB (2235 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  87.17u 0.12s 87.29t   Elapsed:  00:00:04
  Total cpu time:  87.17u 0.12s 87.29t   Elapsed:  00:00:04
  Start:  Tue May 21 15:07:19 2013   End:  Tue May 21 15:07:23 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0032922 "circadian regulation of gene expression" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0010104 "regulation of ethylene mediated signaling pathway" evidence=IMP

GO:1901672 "positive regulation of systemic acquired resistance" evidence=IMP

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JGZ1	MED16_ARATH	No assigned EC number	0.7601	0.9642	0.8223	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1090
PF12657		173	TFIIIC_delta: Transcription factor IIIC subunit de	94.47
PF11635		753	Med16: Mediator complex subunit 16; InterPro: IPR0	91.95

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])	Back alignment and domain information

Probab=94.47  E-value=0.12  Score=49.79  Aligned_cols=77  Identities=25%  Similarity=0.372  Sum_probs=48.6

Q ss_pred             ceEEEEecCCCCc----ceeEEEeccceEEEEecCCCCCCcccccccccchhhhccccceeeeecccCCCCccccccCCC
Q 001379          157 SVQFIEWSPTSCP----RALLIANFYGRVTIWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKST  232 (1090)
Q Consensus       157 ~vq~ieWSp~~cp----RALLiAnf~GRvtIWtQPsqg~~nlv~da~~w~~ehEWrqd~avvtkwlsg~spyrwlsskss  232 (1090)
                      .|-.++|||.+|-    =.|.+.+-.|||+||..+..-             ..||. .+++|+|-|..   |--....+.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~-------------~~~W~-~v~dvs~~l~~---~~~~~~~~~  149 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP-------------QGEWN-RVADVSEALYS---YFYNWEPSE  149 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc-------------cccEe-eeeehhHHHHH---hhhccCCCc
Confidence            6889999998882    257788999999999887641             34666 45677776661   111112222


Q ss_pred             CCCCcchhhHHhhhccCc
Q 001379          233 SPLNAKSIFEEKFLSQNS  250 (1090)
Q Consensus       233 s~~n~kstFeEKflsqq~  250 (1090)
                      ........|.+.|..++.
T Consensus       150 ~~~~~~~~~~~~~~~~~i  167 (173)
T PF12657_consen  150 SSPLDFEEFQRRFRKQRI  167 (173)
T ss_pred             ccccccchhhhhhhccce
Confidence            333334456677777664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1090
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 52.9 bits (126), Expect = 6e-07
 Identities = 50/363 (13%), Positives = 110/363 (30%), Gaps = 98/363 (26%)

Query: 504 VWVSKV----D----TSIPTSNFKIHQLAAAGPTCDVW-KTTDSGLEK-------SKIVS 547
           V  +K     +      + T   ++    +A  T  +        L          K + 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 548 FDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPA 607
             P DLP ++ +      S     IA   +R G+  +   N+  V+  +++  + I    
Sbjct: 313 CRPQDLPREVLTTNPRRLSI----IA-ESIRDGLATWD--NWKHVNCDKLT--TII---- 359

Query: 608 FSSTSCCSASVWH-DTNKDRTILKIIRVLPPAVP-SSQVKANSSTWERAIAERFWWSLLV 665
                   +S+   +  + R +   + V PP+    + +               W+ ++ 
Sbjct: 360 -------ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-----------LSLIWFDVIK 401

Query: 666 NVDWWDAVGC-TQSAAE----DGIVSLNSVIAVLDADFHSLPSIQHRQ---QYG------ 711
           +            S  E    +  +S+ S+   L     +  ++ HR     Y       
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFD 460

Query: 712 ------PSLDR-----IKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSAL 760
                 P LD+     I   L    + + +      +   + LD   + +E  + + S  
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERM-----TLFRMVFLDF--RFLEQKIRHDST- 512

Query: 761 VPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLAS 820
               W ASG  L+             +  ++ Y   + D    +   +     F   +  
Sbjct: 513 ---AWNASGSILN------------TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 821 HAV 823
           + +
Sbjct: 558 NLI 560

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1090
4gga_A		420	P55CDC, cell division cycle protein 20 homolog; ce	81.91

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A	Back alignment and structure

Probab=81.91  E-value=2.9  Score=40.77  Aligned_cols=80  Identities=15%  Similarity=0.360  Sum_probs=56.7

Q ss_pred             cChhHhhhcc--chhhhhccccceeccccccccCCCCCCCCCceeeEEEecCCCCcceeEEEeecCCCCCceEEEEecCC
Q 001379           89 MSVPELCRNF--SAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECAVFNVIADCPRDSVQFIEWSPT  166 (1090)
Q Consensus        89 msvpElcRnF--savawc~klN~iaca~eTCarip~S~~np~fwiPihIviPerPtE~avfnv~adsp~d~vq~ieWSp~  166 (1090)
                      +..|+|...|  +-|+|. +.|.||.+...+.               +|...+--.-...+.  .....+.|.++.|||.
T Consensus        97 l~ap~~~~d~y~~~l~wS-~~n~lAvgld~tV---------------~lWd~~tg~~~~~~~--~~~~~~~V~sv~fspd  158 (420)
T 4gga_A           97 LDAPEIRNDYYLNLVDWS-SGNVLAVALDNSV---------------YLWSASSGDILQLLQ--MEQPGEYISSVAWIKE  158 (420)
T ss_dssp             EECTTCCCCTTCBCEEEC-TTSEEEEEETTEE---------------EEEETTTCCEEEEEE--CCSTTCCEEEEEECTT
T ss_pred             EECCCCcccccceeEEEC-CCCEEEEEeCCEE---------------EEEECCCCCEEEEEE--ecCCCCcEEEEEECCC
Confidence            4568888877  568996 5699999876554               344443322222333  3456789999999996


Q ss_pred             CCcceeEEEeccceEEEEecCC
Q 001379          167 SCPRALLIANFYGRVTIWTQPS  188 (1090)
Q Consensus       167 ~cpRALLiAnf~GRvtIWtQPs  188 (1090)
                      +  +-|+++..+|.|.||.-.+
T Consensus       159 g--~~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          159 G--NYLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             S--SEEEEEETTSCEEEEETTT
T ss_pred             C--CEEEEEECCCeEEEEEcCC
Confidence            5  6789999999999997543

PyMOL of 4gga

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1090
d1yfqa_		342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	80.76

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.76  E-value=0.72  Score=37.99  Aligned_cols=35  Identities=29%  Similarity=0.538  Sum_probs=30.2

Q ss_pred             ecCCCCCceEEEEecCCCCcceeEEEeccceEEEEec
Q 001379          150 IADCPRDSVQFIEWSPTSCPRALLIANFYGRVTIWTQ  186 (1090)
Q Consensus       150 ~adsp~d~vq~ieWSp~~cpRALLiAnf~GRvtIWtQ  186 (1090)
                      +-..|.|.|..|.|||..  +-|+.+-.+|.|.||.=
T Consensus         6 ~~~~h~d~I~~l~fsp~~--~~L~s~s~Dg~v~iwd~   40 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSK--SLLLITSWDGSLTVYKF   40 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGG--TEEEEEETTSEEEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCC--CEEEEEECCCeEEEEEc
Confidence            347899999999999964  67889999999999953

PyMOL of d1yfqa_