Citrus Sinensis ID: 001382

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------109

MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSKGDIVLEVCGLDCN

cccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccEEcccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHcccccccccccccEEEcccccccccHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHHHHHccHHHHcccccccHHcHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEccccccccccccccEEEEEEccccccccccccccHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccEEEccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccEEccccHHHHHHHHHHHcccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHEEccccccccccccccccccc

ccccccEEEccccccEEEEEEcccccccccHHcccccEEEEccccccccccccEEEEccccccccccccHHHEHHcccccccccccccHHccccccccccccccccccHHHHcccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHcHcccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccEEEEEcccccccccEEEHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccccccccccEEEEEEccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEEccccEEccHHHHHHHHHHHccccccccEEEEEccccccccccccccccccEEEEEEcccccccccccEEEccccHEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHcccccccHHHEccccHHHccccccccHHHHHHHHHHHHHHcccccccccccEEEEEcccccHHHcccHHcccccEEEEEccccccccccccccHHHHHHHHHHHHHccHHEEEcccccEEEcccccccHHHHHHHHHHEEccHHHHHHHHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHEEEEHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHHHHcccccccccccccEEccEccc

matngrlvagshnrnefvliNADEVARVTSVKELSGQICQicgdeieitdngepfvacnecafpvcrpcyeyerregnqacpqcktrykrikgsprvdgdeeeddtddlenefdindrkdphHIAEAMLSSRlnigrgsqayvsgittpsevdsvsvaqeiplltygnedvgissdkhaliippfmgrgkrihpmsfpdgfmtlpprpmdpkkdlavyGYGTVAWKERMEEWKKKQNEKLQVVKHqggngggnndgdgvddpdlpmmdegrqplsrklpissskispyRLIILLRLVILGLFFHYrilhpvndayGLWLTSVICEIWFAVSWIldqfpkwdpivrETYLDRLSlryekegkpsdladiDIFVstvdpmkepplitaNTVLSILAvdypvdkvacyvsddgaAMLTFEALSETSEFARKWvpfckkfkieprapewyFAQKLDylkdkvnpsFIRERRAMKREYEEFKVRINGLVAMAQkvpedgwtmqdgtpwpgnnvrdhpgMIQVFLGqngvrdiegnllprlvyvsrekrpgfdhhkkaGAMNALIRVSAVIsnapyllnvdcdhyiNNSKALREAMCFmmdptsgkkicyvqfpqrfdgidrhdrysnrnvvffdinmkgldgiqgpiyvgtgcvfrrqalygydapvkkkpprktcnclpkwcccccrsrkkskkgksnkknkdtSKQIYALENIEegiedneksslmpqikfekkfgqspVFIASTLkeaggvptgastASLLNEAIHVISCgyedktdwgkeIGWIYGSVTEDILTGFkmhchgwrsvycipkrpafkgsapinlsDRLHQVLRWALGSVEILLSRhcpiwygygcglkplerfsyinsvvypitsipliayctlpaiclltgkfivpeisNYASILFMALFISIAATGIlemqwggvgihdwwrneQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVtskaaddgefsdlylfkwtsllippltlLVFNLIGVIIGVADAISngyetwgplfgKLFFSLWVILHLYPflkgflgkqdrlpTILLVWAILLASIFSLLWArvnpfvskgDIVLEVCGLDCN

matngrlvagshnrnefvliNADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERregnqacpqcktrykrikgsprvdgdeeeddtddlenefdindrkdpHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTygnedvgissdKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVkhqggngggnndgdgVDDPDLPMMDEGRqplsrklpissskispYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLryekegkpsdladIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKkfkieprapewyfaqkldylkdkvnpsFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFdgidrhdrySNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYgydapvkkkpprktcnclpkwcccccrsrkkskkgksnkknkdtskqiyALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVtskaaddgeFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSKGDIVLEVCGLDCN

MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVdgdeeeddtddlenefdINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQggngggnndgdgvddPDLPMMDEGRQPLSRKLPISSSKISPYrliillrlvilglFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRktcnclpkwcccccrsrkkskkgksnkknkdtskQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKvvggvntnftvtSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSKGDIVLEVCGLDCN

*************RNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC*******************************************************QAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRIHPMSF***F************DLAVYGYGTVAWKERM*******************************************************ISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCC*************************************************FGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSKGDIVLEVCGLD**

****GRL*AGSHNRNEF***********************ICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT*********************DLENEF*******************************************************************************************************VYGYGTVAWKERME***********************************************LPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSL*Y******SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWY**************SFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLG***VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRK***************KQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSKGDIVLEVCGLD**

MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI*****************LENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRS***************TSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSKGDIVLEVCGLDCN

*****RLVAGSHNRNEFVLINADEVARVTSV*ELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKG***********DTDDLENEFDINDR*DPHHIAEAMLSSRLNI*************************I***************************************FMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQN**************************LPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCR****************************EGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSKGDIVLEVCGLDCN

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1089	2.2.26 [Sep-21-2011]
Q9SJ22		1088	Probable cellulose syntha	yes	no	0.987	0.988	0.779	0.0
Q94JQ6		1084	Cellulose synthase A cata	no	no	0.985	0.989	0.785	0.0
Q8L778		1069	Cellulose synthase A cata	no	no	0.974	0.992	0.785	0.0
O48947		1084	Cellulose synthase A cata	no	no	0.987	0.991	0.785	0.0
Q69V23		1093	Probable cellulose syntha	yes	no	0.989	0.986	0.718	0.0
Q851L8		1092	Probable cellulose syntha	yes	no	0.988	0.986	0.715	0.0
A2XNT2		1092	Probable cellulose syntha	N/A	no	0.988	0.986	0.715	0.0
Q6YVM4		1092	Probable cellulose syntha	no	no	0.983	0.980	0.710	0.0
Q6AT26		1076	Probable cellulose syntha	no	no	0.970	0.982	0.656	0.0
A2Y0X2		1076	Probable cellulose syntha	N/A	no	0.970	0.982	0.656	0.0

>sp\|Q9SJ22\|CESA9_ARATH Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1	Back alignment and function desciption

 Score = 1759 bits (4555), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 857/1099 (77%), Positives = 958/1099 (87%), Gaps = 24/1099 (2%)

Query: 1    MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNE 60
            M T GRL+AGSHNRNEFVLINAD+ AR+ S +ELSGQ C+IC DEIE+TDNGEPF+ACNE
Sbjct: 1    MNTGGRLIAGSHNRNEFVLINADDTARIRSAEELSGQTCKICRDEIELTDNGEPFIACNE 60

Query: 61   CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDRKD 120
            CAFP CRPCYEYERREGNQACPQC TRYKRIKGSPRV+GDEE+DD DDLE+EF      D
Sbjct: 61   CAFPTCRPCYEYERREGNQACPQCGTRYKRIKGSPRVEGDEEDDDIDDLEHEFY---GMD 117

Query: 121  PHHIAEAMLS-SRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHA 179
            P H+ EA L   RLN GRG+          S + S S   E+PLLTY +ED  + SD+HA
Sbjct: 118  PEHVTEAALYYMRLNTGRGTDEV-------SHLYSASPGSEVPLLTYCDEDSDMYSDRHA 170

Query: 180  LIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEK 239
            LI+PP  G G R+H + F D F ++  RPM P+KDL VYGYG+VAWK+RME WKK+Q EK
Sbjct: 171  LIVPPSTGLGNRVHHVPFTDSFASIHTRPMVPQKDLTVYGYGSVAWKDRMEVWKKQQIEK 230

Query: 240  LQVVKHQGGNGGGNNDGDG-----VDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILL 294
            LQVVK++  N G   DGDG     +DDP LPMMDEGRQPLSRKLPI SS+I+PYR++I  
Sbjct: 231  LQVVKNERVNDG---DGDGFIVDELDDPGLPMMDEGRQPLSRKLPIRSSRINPYRMLIFC 287

Query: 295  RLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSL 354
            RL ILGLFFHYRILHPVNDA+GLWLTSVICEIWFAVSWILDQFPKW PI RETYLDRLSL
Sbjct: 288  RLAILGLFFHYRILHPVNDAFGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSL 347

Query: 355  RYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAML 414
            RYEKEGKPS+LA +D+FVSTVDP+KEPPLITANTVLSILAVDYPV+KVACYVSDDGAAML
Sbjct: 348  RYEKEGKPSELAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAML 407

Query: 415  TFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYE 474
            TFEALS T+EFARKWVPFCKKF IEPRAPEWYF+QK+DYLK KV+P+F+ ERRAMKR+YE
Sbjct: 408  TFEALSYTAEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKHKVDPAFVMERRAMKRDYE 467

Query: 475  EFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPR 534
            EFKV+IN LV+++QKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLG +GV D++GN LPR
Sbjct: 468  EFKVKINALVSVSQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVCDMDGNELPR 527

Query: 535  LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM 594
            LVYVSREKRPGFDHHKKAGAMN+LIRVSAV+SNAPYLLNVDCDHYINNSKA+REAMCFMM
Sbjct: 528  LVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKAIREAMCFMM 587

Query: 595  DPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQA 654
            DP SGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQA
Sbjct: 588  DPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQA 647

Query: 655  LYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSK---KGKSNKKNKDTSKQIYALENIE 711
            LYG+DAP KK+PP +TCNC PKWCC CC  RKK     K    KK K+TSKQI+ALE+IE
Sbjct: 648  LYGFDAPKKKQPPGRTCNCWPKWCCLCCGMRKKKTGKVKDNQRKKPKETSKQIHALEHIE 707

Query: 712  EGIE--DNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCG 769
            EG++  + E +S   Q+K EKKFGQSPV +ASTL   GGVP+  + ASLL E+I VISCG
Sbjct: 708  EGLQVTNAENNSETAQLKLEKKFGQSPVLVASTLLLNGGVPSNVNPASLLRESIQVISCG 767

Query: 770  YEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQV 829
            YE+KT+WGKEIGWIYGSVTEDILTGFKMHCHGWRSVYC+PKR AFKGSAPINLSDRLHQV
Sbjct: 768  YEEKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAPINLSDRLHQV 827

Query: 830  LRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLT 889
            LRWALGSVEI LSRHCPIWYGYG GLK LERFSYINSVVYP TS+PL+ YC+LPAICLLT
Sbjct: 828  LRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSLPLLVYCSLPAICLLT 887

Query: 890  GKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFAL 949
            GKFIVPEISNYA ILF+ +F+SIA TGILEMQWG +GI DWWRNEQFWVIGG SSHLFAL
Sbjct: 888  GKFIVPEISNYAGILFLLMFMSIAVTGILEMQWGKIGIDDWWRNEQFWVIGGVSSHLFAL 947

Query: 950  IQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADA 1009
             QGLLKV+ GV+TNFTVTSKAADDGEFS+LY+FKWTSLLIPP TLL+ N++GVI+GV+DA
Sbjct: 948  FQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGVSDA 1007

Query: 1010 ISNGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWAR 1069
            I+NGY++WGPLFG+LFF+LWVI+HLYPFLKG LGKQDR+PTI+LVW+ILLASI +LLW R
Sbjct: 1008 INNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVR 1067

Query: 1070 VNPFVSKGDIVLEVCGLDC 1088
            VNPFVSK   VLE+CGLDC
Sbjct: 1068 VNPFVSKDGPVLEICGLDC 1086

Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 2

>sp\|Q94JQ6\|CESA6_ARATH Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2	Back alignment and function description

>sp\|Q8L778\|CESA5_ARATH Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2	Back alignment and function description

>sp\|O48947\|CESA2_ARATH Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1	Back alignment and function description

>sp\|Q69V23\|CESA3_ORYSJ Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1	Back alignment and function description

>sp\|Q851L8\|CESA5_ORYSJ Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1	Back alignment and function description

>sp\|A2XNT2\|CESA5_ORYSI Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1	Back alignment and function description

>sp\|Q6YVM4\|CESA6_ORYSJ Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1	Back alignment and function description

>sp\|Q6AT26\|CESA1_ORYSJ Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1	Back alignment and function description

>sp\|A2Y0X2\|CESA1_ORYSI Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1089
224066625		1093	cellulose synthase [Populus trichocarpa]	0.998	0.994	0.884	0.0
224082476		1095	predicted protein [Populus trichocarpa]	0.998	0.992	0.876	0.0
255566630		1095	Cellulose synthase A catalytic subunit 6	0.991	0.986	0.855	0.0
429326440		1093	cellulose synthase [Populus tomentosa]	0.998	0.994	0.878	0.0
429326442		1097	cellulose synthase [Populus tomentosa]	0.998	0.990	0.868	0.0
47078494		1095	cellulose synthase [Populus tremula x Po	0.998	0.992	0.870	0.0
376315432		1090	CESA9 [Gossypium hirsutum]	0.994	0.993	0.855	0.0
332356351		1100	cellulose synthase [Populus tomentosa]	0.998	0.988	0.872	0.0
225460638		1096	PREDICTED: cellulose synthase A catalyti	0.998	0.991	0.867	0.0
357443617		1135	Cellulose synthase [Medicago truncatula]	0.995	0.955	0.806	0.0

>gi\|224066625\|ref\|XP_002302169.1\| cellulose synthase [Populus trichocarpa] gi\|222843895\|gb\|EEE81442.1\| cellulose synthase [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1935 bits (5012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 969/1095 (88%), Positives = 1034/1095 (94%), Gaps = 8/1095 (0%)

Query: 1    MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNE 60
            M T GRL+AGSHNRNEFVLINADE+ARVTSVKELSGQIC+ICGDEIE+T +GEPFVACNE
Sbjct: 1    METKGRLIAGSHNRNEFVLINADEIARVTSVKELSGQICKICGDEIEVTVDGEPFVACNE 60

Query: 61   CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDI--NDR 118
            CAFPVCRPCYEYERREGNQACPQC+TRYKRIKGSPRVDGDEEE+DTDDLENEFDI  NDR
Sbjct: 61   CAFPVCRPCYEYERREGNQACPQCRTRYKRIKGSPRVDGDEEEEDTDDLENEFDIGVNDR 120

Query: 119  KDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKH 178
            +DP H+AEA+LS+RLN GRGSQA+VSG  TPSE DS SVA EIPLLTYG EDVGISSDKH
Sbjct: 121  RDPRHVAEALLSARLNTGRGSQAHVSGFATPSEFDSASVAPEIPLLTYGEEDVGISSDKH 180

Query: 179  ALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNE 238
            ALI+PPF   GKRIHPM F D  + LPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQ++
Sbjct: 181  ALIVPPF--HGKRIHPMPFSDSSIPLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQSD 238

Query: 239  KLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVI 298
            KLQVVKHQGG GG NN GD +DDPDLPMMDEGRQPLSRKLPISSSKISPYRLII+LRLVI
Sbjct: 239  KLQVVKHQGGKGGENNGGDELDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIIILRLVI 298

Query: 299  LGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEK 358
            LGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKW PI RETYLDRLSLRYEK
Sbjct: 299  LGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEK 358

Query: 359  EGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEA 418
            EGKPS+LA +D+FVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEA
Sbjct: 359  EGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEA 418

Query: 419  LSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKV 478
            +SETSEFARKWVPFCK+F IEPRAPEWYFAQK+DYLKD+V+P+FIRERRAMKREYEEFKV
Sbjct: 419  ISETSEFARKWVPFCKRFSIEPRAPEWYFAQKVDYLKDRVDPAFIRERRAMKREYEEFKV 478

Query: 479  RINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYV 538
            RINGLVA AQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLG NGV D+EGN LPRLVYV
Sbjct: 479  RINGLVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHNGVHDVEGNELPRLVYV 538

Query: 539  SREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTS 598
            SREKRPGFDHHKKAGAMN+L+RVSA+I+NAPY+LNVDCDHYINNSKALREAMCFMMDPTS
Sbjct: 539  SREKRPGFDHHKKAGAMNSLVRVSAIITNAPYMLNVDCDHYINNSKALREAMCFMMDPTS 598

Query: 599  GKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGY 658
            GKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGY
Sbjct: 599  GKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGY 658

Query: 659  DAPVKKKPPRKTCNCLPKW--CCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIE- 715
            DAP+KKKPP +TCNCLPKW  CCC  + + K  K    KK+KD SKQI+ALENIEEGIE 
Sbjct: 659  DAPIKKKPPGRTCNCLPKWCCCCCRSKKKNKKSKSNEKKKSKDASKQIHALENIEEGIEG 718

Query: 716  -DNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKT 774
             DNEKS+LMPQIKFEKKFGQS VFIASTL E GGVP GAS+ASLL EAIHVISCGYEDKT
Sbjct: 719  IDNEKSALMPQIKFEKKFGQSSVFIASTLMEDGGVPKGASSASLLKEAIHVISCGYEDKT 778

Query: 775  DWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWAL 834
            +WGKEIGWIYGSVTEDILTGFKMHCHGWRSVYC+PKRPAFKGSAPINLSDRLHQVLRWAL
Sbjct: 779  EWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWAL 838

Query: 835  GSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIV 894
            GSVEILLSRHCPIWYGYGCGLK LERFSYINSVVYP+TSIPLIAYCTLPA+CLLTGKFIV
Sbjct: 839  GSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIV 898

Query: 895  PEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLL 954
            PEISNYASI+FMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGAS+HLFAL QGLL
Sbjct: 899  PEISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASAHLFALFQGLL 958

Query: 955  KVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGY 1014
            KV+ GVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPP+TLL+ N+IGV++G++DAI+NGY
Sbjct: 959  KVLAGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPMTLLIINIIGVVVGISDAINNGY 1018

Query: 1015 ETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFV 1074
            ETWGPLFGKLFF+LWVI+HLYPFLKG+LGKQDRLPTI++VW+ILLAS+ +LLW R+NPFV
Sbjct: 1019 ETWGPLFGKLFFALWVIVHLYPFLKGWLGKQDRLPTIIVVWSILLASVLTLLWVRINPFV 1078

Query: 1075 SKGDIVLEVCGLDCN 1089
            SKG IVLEVCGLDCN
Sbjct: 1079 SKGGIVLEVCGLDCN 1093

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224082476\|ref\|XP_002306707.1\| predicted protein [Populus trichocarpa] gi\|222856156\|gb\|EEE93703.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255566630\|ref\|XP_002524299.1\| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis] gi\|223536390\|gb\|EEF38039.1\| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|429326440\|gb\|AFZ78560.1\| cellulose synthase [Populus tomentosa]	Back alignment and taxonomy information

>gi\|429326442\|gb\|AFZ78561.1\| cellulose synthase [Populus tomentosa]	Back alignment and taxonomy information

>gi\|47078494\|gb\|AAT09895.1\| cellulose synthase [Populus tremula x Populus tremuloides]	Back alignment and taxonomy information

>gi\|376315432\|gb\|AFB18639.1\| CESA9 [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|332356351\|gb\|AEE60899.1\| cellulose synthase [Populus tomentosa]	Back alignment and taxonomy information

>gi\|225460638\|ref\|XP_002265955.1\| PREDICTED: cellulose synthase A catalytic subunit 6 [UDP-forming] [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357443617\|ref\|XP_003592086.1\| Cellulose synthase [Medicago truncatula] gi\|355481134\|gb\|AES62337.1\| Cellulose synthase [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1089
TAIR\|locus:2136308		1084	CESA2 "cellulose synthase A2"	0.985	0.989	0.738	0.0
TAIR\|locus:2176090		1084	CESA6 "cellulose synthase 6" [	0.985	0.989	0.736	0.0
TAIR\|locus:2178193		1069	CESA5 "cellulose synthase 5" [	0.855	0.871	0.758	0.0
TAIR\|locus:2127776		1081	CESA1 "cellulose synthase 1" [	0.967	0.975	0.615	0.0
TAIR\|locus:2156789		1065	CEV1 "CONSTITUTIVE EXPRESSION	0.955	0.977	0.612	0.0
TAIR\|locus:2040080		1065	CESA10 "cellulose synthase 10"	0.834	0.853	0.631	0.0
TAIR\|locus:2124167		985	IRX1 "IRREGULAR XYLEM 1" [Arab	0.794	0.878	0.635	0.0
TAIR\|locus:2052576		1088	CESA9 "cellulose synthase A9"	0.603	0.603	0.746	0.0
TAIR\|locus:2178935		1026	IRX3 "IRREGULAR XYLEM 3" [Arab	0.393	0.418	0.704	0.0
TAIR\|locus:2172457		1049	CESA4 "cellulose synthase A4"	0.404	0.419	0.689	0.0

TAIR\|locus:2136308 CESA2 "cellulose synthase A2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4298 (1518.0 bits), Expect = 0., P = 0.
 Identities = 810/1097 (73%), Positives = 894/1097 (81%)

Query:     1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNE 60
             M T GRL+AGSHNRNEFVLINADE AR+ SV+ELSGQ CQICGDEIE+T + E FVACNE
Sbjct:     1 MNTGGRLIAGSHNRNEFVLINADESARIRSVQELSGQTCQICGDEIELTVSSELFVACNE 60

Query:    61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVXXXXXXXXXXXXXXXXXINDRKD 120
             CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV                  +   D
Sbjct:    61 CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDDEEEEDIDDLEYE-FDHGMD 119

Query:   121 PHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHAL 180
             P H AEA LSSRLN GRG             +DS     +IPLLTY +ED  + SD+HAL
Sbjct:   120 PEHAAEAALSSRLNTGRGG------------LDSAPPGSQIPLLTYCDEDADMYSDRHAL 167

Query:   181 IIPPFMGRGKRIHPMSFPDGFMTLPP--RPMDPKKDLAVYGYGTVAWKERMEEWKKKQNE 238
             I+PP  G G R++P  F D   + PP  R M P+KD+A YGYG+VAWK+RME WK++Q E
Sbjct:   168 IVPPSTGYGNRVYPAPFTDS--SAPPQARSMVPQKDIAEYGYGSVAWKDRMEVWKRRQGE 225

Query:   239 KLQVVKHQXXXXXXXXXXXXXXX-PDLPMMDEGRQPLSRKLPISSSKISPYXXXXXXXXX 297
             KLQV+KH+                PD+PMMDEGRQPLSRKLPI SS+I+PY         
Sbjct:   226 KLQVIKHEGGNNGRGSNDDDELDDPDMPMMDEGRQPLSRKLPIRSSRINPYRMLILCRLA 285

Query:   298 XXXXFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYE 357
                 FFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKW PI RETYLDRLSLRYE
Sbjct:   286 ILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYE 345

Query:   358 KEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFE 417
             KEGKPS LA +D+FVSTVDP+KEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFE
Sbjct:   346 KEGKPSGLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFE 405

Query:   418 ALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFK 477
             ALS+T+EFARKWVPFCKKF IEPRAPEWYF+QK+DYLK+KV+P+F+RERRAMKR+YEEFK
Sbjct:   406 ALSDTAEFARKWVPFCKKFNIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKRDYEEFK 465

Query:   478 VRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVY 537
             V+IN LVA AQKVPE+GWTMQDGTPWPGNNVRDHPGMIQVFLG +GVRD +GN LPRLVY
Sbjct:   466 VKINALVATAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDTDGNELPRLVY 525

Query:   538 VSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPT 597
             VSREKRPGFDHHKKAGAMN+LIRVSAV+SNAPYLLNVDCDHYINNSKA+RE+MCFMMDP 
Sbjct:   526 VSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKAIRESMCFMMDPQ 585

Query:   598 SGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYG 657
             SGKK+CYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYG
Sbjct:   586 SGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYG 645

Query:   658 YDAPVKKKPPRXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXQIYALENIEEGI- 714
             +DAP KKKPP                                     QI+ALEN++EG+ 
Sbjct:   646 FDAPKKKKPPGKTCNCWPKWCCLCCGLRKKSKTKAKDKKTNTKETSKQIHALENVDEGVI 705

Query:   715 ---EDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYE 771
                 + EK S   Q+K EKKFGQSPVF+AS + + GGVP  AS A LL EAI VISCGYE
Sbjct:   706 VPVSNVEKRSEATQLKLEKKFGQSPVFVASAVLQNGGVPRNASPACLLREAIQVISCGYE 765

Query:   772 DKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLR 831
             DKT+WGKEIGWIYGSVTEDILTGFKMHCHGWRSVYC+PKR AFKGSAPINLSDRLHQVLR
Sbjct:   766 DKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAPINLSDRLHQVLR 825

Query:   832 WALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGK 891
             WALGSVEI LSRHCPIWYGYG GLK LERFSYINSVVYP TS+PLI YC+LPA+CLLTGK
Sbjct:   826 WALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSLPLIVYCSLPAVCLLTGK 885

Query:   892 FIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQ 951
             FIVPEISNYA ILFM +FISIA TGILEMQWGGVGI DWWRNEQFWVIGGASSHLFAL Q
Sbjct:   886 FIVPEISNYAGILFMLMFISIAVTGILEMQWGGVGIDDWWRNEQFWVIGGASSHLFALFQ 945

Query:   952 GLLKXXXXXXXXXXXXSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAIS 1011
             GLLK            SKAADDG FS+LY+FKWT+LLIPP TLL+ N+IGVI+GV+DAIS
Sbjct:   946 GLLKVLAGVNTNFTVTSKAADDGAFSELYIFKWTTLLIPPTTLLIINIIGVIVGVSDAIS 1005

Query:  1012 NGYETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVN 1071
             NGY++WGPLFG+LFF+LWVI+HLYPFLKG LGKQD++PTI++VW+ILLASI +LLW RVN
Sbjct:  1006 NGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVN 1065

Query:  1072 PFVSKGDIVLEVCGLDC 1088
             PFV+KG  VLE+CGL+C
Sbjct:  1066 PFVAKGGPVLEICGLNC 1082

GO:0005886 "plasma membrane" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016759 "cellulose synthase activity" evidence=ISS;IMP

GO:0016760 "cellulose synthase (UDP-forming) activity" evidence=IEA

GO:0030244 "cellulose biosynthetic process" evidence=IEA;IMP

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0009833 "primary cell wall biogenesis" evidence=TAS

TAIR\|locus:2176090 CESA6 "cellulose synthase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178193 CESA5 "cellulose synthase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2127776 CESA1 "cellulose synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040080 CESA10 "cellulose synthase 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124167 IRX1 "IRREGULAR XYLEM 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2052576 CESA9 "cellulose synthase A9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2172457 CESA4 "cellulose synthase A4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2XN66	CESA2_ORYSI	2, ., 4, ., 1, ., 1, 2	0.6460	0.9485	0.9627	N/A	no
A2Z1C8	CESA9_ORYSI	2, ., 4, ., 1, ., 1, 2	0.6552	0.9476	0.9781	N/A	no
O48947	CESA2_ARATH	2, ., 4, ., 1, ., 1, 2	0.7853	0.9871	0.9916	no	no
Q94JQ6	CESA6_ARATH	2, ., 4, ., 1, ., 1, 2	0.7859	0.9853	0.9898	no	no
Q851L8	CESA5_ORYSJ	2, ., 4, ., 1, ., 1, 2	0.7155	0.9889	0.9862	yes	no
Q6YVM4	CESA6_ORYSJ	2, ., 4, ., 1, ., 1, 2	0.7108	0.9834	0.9807	no	no
A2XNT2	CESA5_ORYSI	2, ., 4, ., 1, ., 1, 2	0.7155	0.9889	0.9862	N/A	no
A2Y0X2	CESA1_ORYSI	2, ., 4, ., 1, ., 1, 2	0.6567	0.9706	0.9823	N/A	no
A2WV32	CESA4_ORYSI	2, ., 4, ., 1, ., 1, 2	0.5818	0.8852	0.9747	N/A	no
Q8L778	CESA5_ARATH	2, ., 4, ., 1, ., 1, 2	0.7853	0.9742	0.9925	no	no
Q9SJ22	CESA9_ARATH	2, ., 4, ., 1, ., 1, 2	0.7797	0.9871	0.9880	yes	no
Q69V23	CESA3_ORYSJ	2, ., 4, ., 1, ., 1, 2	0.7182	0.9898	0.9862	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	0.983
4th Layer	2.4.1.12	0.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1089
PLN02436		1094	PLN02436, PLN02436, cellulose synthase A	0.0
PLN02638		1079	PLN02638, PLN02638, cellulose synthase A (UDP-form	0.0
PLN02400		1085	PLN02400, PLN02400, cellulose synthase	0.0
PLN02189		1040	PLN02189, PLN02189, cellulose synthase	0.0
PLN02915		1044	PLN02915, PLN02915, cellulose synthase A [UDP-form	0.0
PLN02195		977	PLN02195, PLN02195, cellulose synthase A	0.0
pfam03552		716	pfam03552, Cellulose_synt, Cellulose synthase	0.0
PLN02248		1135	PLN02248, PLN02248, cellulose synthase-like protei	0.0
PLN02190		756	PLN02190, PLN02190, cellulose synthase-like protei	1e-132
PLN02893		734	PLN02893, PLN02893, Cellulose synthase-like protei	2e-93
PLN02893		734	PLN02893, PLN02893, Cellulose synthase-like protei	2e-60
cd06421		234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	2e-14
PLN02195		977	PLN02195, PLN02195, cellulose synthase A	1e-12
cd06421		234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	1e-11
TIGR03030		713	TIGR03030, CelA, cellulose synthase catalytic subu	2e-10
PRK11498		852	PRK11498, bcsA, cellulose synthase catalytic subun	4e-09
COG1215		439	COG1215, COG1215, Glycosyltransferases, probably i	7e-09
TIGR03030		713	TIGR03030, CelA, cellulose synthase catalytic subu	1e-05
cd06423		180	cd06423, CESA_like, CESA_like is the cellulose syn	3e-05
pfam14446		55	pfam14446, Prok-RING_1, Prokaryotic RING finger fa	2e-04
COG5175		480	COG5175, MOT2, Transcriptional repressor [Transcri	2e-04
cd06421		234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	3e-04
TIGR03030		713	TIGR03030, CelA, cellulose synthase catalytic subu	4e-04
cd06435		236	cd06435, CESA_NdvC_like, NdvC_like proteins in thi	6e-04
COG1215		439	COG1215, COG1215, Glycosyltransferases, probably i	0.002
pfam13632		194	pfam13632, Glyco_trans_2_3, Glycosyl transferase f	0.003
pfam13641		229	pfam13641, Glyco_tranf_2_3, Glycosyltransferase li	0.003

>gnl\|CDD\|215239 PLN02436, PLN02436, cellulose synthase A	Back alignment and domain information

 Score = 2317 bits (6006), Expect = 0.0
 Identities = 946/1096 (86%), Positives = 1008/1096 (91%), Gaps = 9/1096 (0%)

Query: 1    MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNE 60
            M T GRL+AGSHNRNEFVLINADE+AR+ SV+ELSGQ CQICGDEIE+T +GEPFVACNE
Sbjct: 1    MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNE 60

Query: 61   CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDI-NDRK 119
            CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRV+GDEEEDD DDLENEFD  N+  
Sbjct: 61   CAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGNNGL 120

Query: 120  DPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHA 179
            DP  +AEAMLSSRLN GR S   VSGI TPSE+DS     +IPLLTYG EDV ISSD+HA
Sbjct: 121  DPEQVAEAMLSSRLNTGRHSN--VSGIATPSELDSAPPGSQIPLLTYGEEDVEISSDRHA 178

Query: 180  LIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEK 239
            LI+PP  G G R+HPM FPD   +L PRPM P+KDLAVYGYG+VAWK+RMEEWKKKQNEK
Sbjct: 179  LIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEK 238

Query: 240  LQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVIL 299
            LQVVKH+GGN GGNNDGD +DDPDLPMMDEGRQPLSRKLPI SSKI+PYR+II+LRLVIL
Sbjct: 239  LQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVIL 298

Query: 300  GLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKE 359
            GLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKW PI RETYLDRLSLRYEKE
Sbjct: 299  GLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKE 358

Query: 360  GKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEAL 419
            GKPS+LA +D+FVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEAL
Sbjct: 359  GKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEAL 418

Query: 420  SETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVR 479
            SETSEFARKWVPFCKKF IEPRAPEWYF+QK+DYLK+KV+P+F+RERRAMKREYEEFKV+
Sbjct: 419  SETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVK 478

Query: 480  INGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVS 539
            IN LVA AQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLG +GVRD+EGN LPRLVYVS
Sbjct: 479  INALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVS 538

Query: 540  REKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSG 599
            REKRPGFDHHKKAGAMN+LIRVSAV+SNAPYLLNVDCDHYINNSKALREAMCFMMDP SG
Sbjct: 539  REKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSG 598

Query: 600  KKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYD 659
            KKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYD
Sbjct: 599  KKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYD 658

Query: 660  APVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKS----NKKNKDTSKQIYALENIEEGIE 715
            AP KKKPP KTCNC PKWCC CC SRKK KK KS     KKN++ SKQI+ALENIEEGIE
Sbjct: 659  APKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEGIE 718

Query: 716  --DNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDK 773
              +NEKSS  PQ+K EKKFGQSPVF+ASTL E GGVP  AS ASLL EAI VISCGYEDK
Sbjct: 719  GSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDK 778

Query: 774  TDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWA 833
            T+WGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWA
Sbjct: 779  TEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWA 838

Query: 834  LGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFI 893
            LGSVEI LSRHCPIWYGYG GLK LERFSYINSVVYP TSIPLI YCTLPAICLLTGKFI
Sbjct: 839  LGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLIVYCTLPAICLLTGKFI 898

Query: 894  VPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGL 953
            VPEISNYASILFMALFISIAATGILEMQWGGVGI DWWRNEQFWVIGG SSHLFAL QGL
Sbjct: 899  VPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGL 958

Query: 954  LKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNG 1013
            LKV+ GVNTNFTVTSKAADDGEFS+LYLFKWTSLLIPP TLL+ N+IGVI+GV+DAI+NG
Sbjct: 959  LKVLAGVNTNFTVTSKAADDGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNG 1018

Query: 1014 YETWGPLFGKLFFSLWVILHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPF 1073
            Y++WGPLFG+LFF+LWVI+HLYPFLKG LGKQDR+PTI+LVW+ILLASI +LLW RVNPF
Sbjct: 1019 YDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPF 1078

Query: 1074 VSKGDIVLEVCGLDCN 1089
            VSKG  VLE+CGLDC+
Sbjct: 1079 VSKGGPVLEICGLDCD 1094

Length = 1094

>gnl\|CDD\|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit	Back alignment and domain information

>gnl\|CDD\|215224 PLN02400, PLN02400, cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215121 PLN02189, PLN02189, cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit	Back alignment and domain information

>gnl\|CDD\|215124 PLN02195, PLN02195, cellulose synthase A	Back alignment and domain information

>gnl\|CDD\|217611 pfam03552, Cellulose_synt, Cellulose synthase	Back alignment and domain information

>gnl\|CDD\|215138 PLN02248, PLN02248, cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|215122 PLN02190, PLN02190, cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|215483 PLN02893, PLN02893, Cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|215483 PLN02893, PLN02893, Cellulose synthase-like protein	Back alignment and domain information

>gnl\|CDD\|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>gnl\|CDD\|215124 PLN02195, PLN02195, cellulose synthase A	Back alignment and domain information

>gnl\|CDD\|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>gnl\|CDD\|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>gnl\|CDD\|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>gnl\|CDD\|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily	Back alignment and domain information

>gnl\|CDD\|222758 pfam14446, Prok-RING_1, Prokaryotic RING finger family 1	Back alignment and domain information

>gnl\|CDD\|227502 COG5175, MOT2, Transcriptional repressor [Transcription]	Back alignment and domain information

>gnl\|CDD\|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>gnl\|CDD\|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>gnl\|CDD\|133057 cd06435, CESA_NdvC_like, NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase	Back alignment and domain information

>gnl\|CDD\|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|222273 pfam13632, Glyco_trans_2_3, Glycosyl transferase family group 2	Back alignment and domain information

>gnl\|CDD\|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1089
PLN02436		1094	cellulose synthase A	100.0
PLN02400		1085	cellulose synthase	100.0
PLN02638		1079	cellulose synthase A (UDP-forming), catalytic subu	100.0
PLN02189		1040	cellulose synthase	100.0
PLN02915		1044	cellulose synthase A [UDP-forming], catalytic subu	100.0
PLN02195		977	cellulose synthase A	100.0
PLN02248		1135	cellulose synthase-like protein	100.0
PF03552		720	Cellulose_synt: Cellulose synthase; InterPro: IPR0	100.0
PLN02190		756	cellulose synthase-like protein	100.0
PLN02893		734	Cellulose synthase-like protein	100.0
TIGR03030		713	CelA cellulose synthase catalytic subunit (UDP-for	100.0
PRK11498		852	bcsA cellulose synthase catalytic subunit; Provisi	100.0
PF14569		80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	100.0
PRK05454		691	glucosyltransferase MdoH; Provisional	100.0
cd04191		254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	100.0
COG1215		439	Glycosyltransferases, probably involved in cell wa	99.97
PRK14583		444	hmsR N-glycosyltransferase; Provisional	99.97
TIGR03111		439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	99.96
PRK11204		420	N-glycosyltransferase; Provisional	99.96
PRK14716		504	bacteriophage N4 adsorption protein B; Provisional	99.94
cd06421		234	CESA_CelA_like CESA_CelA_like are involved in the	99.92
PRK11234		727	nfrB bacteriophage N4 adsorption protein B; Provis	99.92
cd06437		232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	99.92
cd06427		241	CESA_like_2 CESA_like_2 is a member of the cellulo	99.9
cd06435		236	CESA_NdvC_like NdvC_like proteins in this family a	99.9
PF13641		228	Glyco_tranf_2_3: Glycosyltransferase like family 2	99.87
PRK15489		703	nfrB bacteriophage N4 adsorption protein B; Provis	99.84
cd04190		244	Chitin_synth_C C-terminal domain of Chitin Synthas	99.83
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	99.83
cd04192		229	GT_2_like_e Subfamily of Glycosyltransferase Famil	99.8
cd02520		196	Glucosylceramide_synthase Glucosylceramide synthas	99.79
cd06434		235	GT2_HAS Hyaluronan synthases catalyze polymerizati	99.76
COG2943		736	MdoH Membrane glycosyltransferase [Cell envelope b	99.74
cd06439		251	CESA_like_1 CESA_like_1 is a member of the cellulo	99.73
TIGR03469		384	HonB hopene-associated glycosyltransferase HpnB. T	99.72
cd02525		249	Succinoglycan_BP_ExoA ExoA is involved in the bios	99.65
PF13632		193	Glyco_trans_2_3: Glycosyl transferase family group	99.64
cd06436		191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	99.53
cd06438		183	EpsO_like EpsO protein participates in the methano	99.41
cd04184		202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	99.37
cd04195		201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	99.3
PF13506		175	Glyco_transf_21: Glycosyl transferase family 21	99.18
cd06433		202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	99.18
cd02510		299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	99.08
cd04196		214	GT_2_like_d Subfamily of Glycosyltransferase Famil	99.08
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	99.06
cd02522		221	GT_2_like_a GT_2_like_a represents a glycosyltrans	99.05
cd06420		182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	99.04
cd04186		166	GT_2_like_c Subfamily of Glycosyltransferase Famil	99.02
PF03142		527	Chitin_synth_2: Chitin synthase; InterPro: IPR0048	99.0
PLN02726		243	dolichyl-phosphate beta-D-mannosyltransferase	98.96
cd06423		180	CESA_like CESA_like is the cellulose synthase supe	98.96
cd02526		237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	98.95
cd06913		219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	98.92
cd04185		202	GT_2_like_b Subfamily of Glycosyltransferase Famil	98.88
PF00535		169	Glycos_transf_2: Glycosyl transferase family 2; In	98.87
cd06442		224	DPM1_like DPM1_like represents putative enzymes si	98.86
cd04188		211	DPG_synthase DPG_synthase is involved in protein N	98.62
PRK10073		328	putative glycosyl transferase; Provisional	98.61
cd04179		185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	98.56
PRK10018		279	putative glycosyl transferase; Provisional	98.52
TIGR01556		281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	98.49
PRK10063		248	putative glycosyl transferase; Provisional	98.34
cd00761		156	Glyco_tranf_GTA_type Glycosyltransferase family A	98.34
cd04187		181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	98.32
KOG2571		862	consensus Chitin synthase/hyaluronan synthase (gly	98.24
PF10111		281	Glyco_tranf_2_2: Glycosyltransferase like family 2	98.21
PTZ00260		333	dolichyl-phosphate beta-glucosyltransferase; Provi	98.11
PRK13915		306	putative glucosyl-3-phosphoglycerate synthase; Pro	98.02
COG1216		305	Predicted glycosyltransferases [General function p	98.02
PRK10714		325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	97.29
KOG2547		431	consensus Ceramide glucosyltransferase [Lipid tran	97.16
cd02511		229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	96.87
COG5175		480	MOT2 Transcriptional repressor [Transcription]	96.82
COG0463		291	WcaA Glycosyltransferases involved in cell wall bi	96.8
PF14446		54	Prok-RING_1: Prokaryotic RING finger family 1	95.82
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	95.56
PF02364		817	Glucan_synthase: 1,3-beta-glucan synthase componen	94.6
cd02514		334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	94.54
PF05290		140	Baculo_IE-1: Baculovirus immediate-early protein (	89.09
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	88.78
KOG2978		238	consensus Dolichol-phosphate mannosyltransferase [	87.33
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	80.1

>PLN02436 cellulose synthase A	Back alignment and domain information

Probab=100.00  E-value=0  Score=2893.25  Aligned_cols=1085  Identities=86%  Similarity=1.447  Sum_probs=1013.1

Q ss_pred             CCCCCcccccccCCceEEEeecccccccccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCC
Q 001382            1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA   80 (1089)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~   80 (1089)
                      ||+++|||||||||||||+++.|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus         1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~   80 (1094)
T PLN02436          1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQA   80 (1094)
T ss_pred             CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence            99999999999999999999999777779999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccccCCCCCCCCCCCCCcccccccccCC-CCCCchhhHHHhhhhccccCCCCCcccccccCCCccccccccC
Q 001382           81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDIN-DRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQ  159 (1089)
Q Consensus        81 CpqCkt~Ykr~kgsprv~gd~ee~~~dd~~~ef~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (1089)
                      |||||||||||||||||+|||||||+||+||||+|. ++++.++++|+|++|+|++|++.+.....+..+.+..  +..+
T Consensus        81 Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  158 (1094)
T PLN02436         81 CPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGNNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSA--PPGS  158 (1094)
T ss_pred             CcccCCchhhccCCCCcCCccccccchhhhhhhcCcccccchHHHHHHHhhhhcccCccccccccccccccccC--CCcC
Confidence            999999999999999999999999999999999986 3333477899999999999998762211111112221  0025


Q ss_pred             CCcccccCC--CCCCCCCcCcccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhh
Q 001382          160 EIPLLTYGN--EDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQN  237 (1089)
Q Consensus       160 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  237 (1089)
                      ++|+|++++  +|++  +++|++++|+.+|.||||||+||+|++.++++|.+||+||+++||||||+||||||+||+||+
T Consensus       159 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~  236 (1094)
T PLN02436        159 QIPLLTYGEEDVEIS--SDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQN  236 (1094)
T ss_pred             CCcccccCcccCccC--CcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhh
Confidence            789999876  5555  567777788888889999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhcccCCCCCCCCCCCCCCCCCCCcCccCCCCCceeeeecCCCCcchhHHHHHHHHHHHHHhhhhhccccccchhhH
Q 001382          238 EKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGL  317 (1089)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~wRi~~~~~~a~~l  317 (1089)
                      +|++++.+..+..+|+.++.+.+++|++++|++++||+||+++++++++|||++++++|+++++||+||++|++.+++|+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~  316 (1094)
T PLN02436        237 EKLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGL  316 (1094)
T ss_pred             hcccccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHH
Confidence            55555554322223344432334678899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 001382          318 WLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDY  397 (1089)
Q Consensus       318 wl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DY  397 (1089)
                      |+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+||
T Consensus       317 Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DY  396 (1094)
T PLN02436        317 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDY  396 (1094)
T ss_pred             HHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCCCchhhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q 001382          398 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFK  477 (1089)
Q Consensus       398 P~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k  477 (1089)
                      |+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||
T Consensus       397 P~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K  476 (1094)
T PLN02436        397 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFK  476 (1094)
T ss_pred             cccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccCCCCccccCCccCcEEEEeccCCCCCCCCCchhhhHH
Q 001382          478 VRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNA  557 (1089)
Q Consensus       478 ~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNa  557 (1089)
                      +|||+|+++++++|+++|.|+||++|||++++|||+|||||++++|+.|.+|++||+|||||||||||++||+||||||+
T Consensus       477 ~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNa  556 (1094)
T PLN02436        477 VKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNS  556 (1094)
T ss_pred             HHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhh
Confidence            99999999889999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             HHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCceEEEEecCccccCCCccccccchhhhhhhhhcccccc
Q 001382          558 LIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG  637 (1089)
Q Consensus       558 llrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~glDg  637 (1089)
                      |+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||
T Consensus       557 LlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDG  636 (1094)
T PLN02436        557 LIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG  636 (1094)
T ss_pred             hhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeecccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccccCC----CccCCcchhhhhhhhhhhhh
Q 001382          638 IQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKS----NKKNKDTSKQIYALENIEEG  713 (1089)
Q Consensus       638 ~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  713 (1089)
                      +|||+|+||||+|||+||||++||...+.+...++||+.|||+||+.|++++++++    +.++.+...+++++++++++
T Consensus       637 lqGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  716 (1094)
T PLN02436        637 IQGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEG  716 (1094)
T ss_pred             CCCccccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999887666666788999999999998876543322    11233455678888998887


Q ss_pred             cc--ccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCCChhhHHHHhHHhhcccccccCccccccCcccccccchH
Q 001382          714 IE--DNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDI  791 (1089)
Q Consensus       714 ~~--~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi  791 (1089)
                      ++  +++++..++++.++++||+|++|++|++++.||.+...+++++++||++||||+||++|+||+||||+|||+|||+
T Consensus       717 ~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv  796 (1094)
T PLN02436        717 IEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDI  796 (1094)
T ss_pred             cccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHH
Confidence            76  4577778999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheecchhhHHHHhhccccccccCCCCCcccchhhhhhhhhHh
Q 001382          792 LTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPI  871 (1089)
Q Consensus       792 ~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l  871 (1089)
                      .||++||++||||+|++|+++||.|+||+|+.+++.||+|||+|++||+++|++|+|+|+.++|+++|||+|+++++||+
T Consensus       797 ~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ly~l  876 (1094)
T PLN02436        797 LTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPW  876 (1094)
T ss_pred             HHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhhHHHHHHHHH
Q 001382          872 TSIPLIAYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQ  951 (1089)
Q Consensus       872 ~sl~~liylllP~l~Ll~G~~ivp~~s~~~~i~fi~lfls~~~~~lLe~~wsG~s~~~wWrne~~W~I~~~sa~l~Av~~  951 (1089)
                      +++++++|+++|++||++|++++|.++.+++++|+++|++++++++||++|+|+++++||||||||+|.++|+|+||+++
T Consensus       877 ~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~  956 (1094)
T PLN02436        877 TSIPLIVYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQ  956 (1094)
T ss_pred             HHHHHHHHHHHHHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCccceeeCCCCCCCCCcccceeeccccchHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHH
Q 001382          952 GLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPLTLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVI 1031 (1089)
Q Consensus       952 aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L~iP~~~Llilnliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl 1031 (1089)
                      +++|+|++++++|.||+|..+++.++++|+|+|++|++|+++++++|++|+++|++++++++++.|+++++++|+++|++
T Consensus       957 ~iLKvLggs~~~F~VTsK~~d~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvv 1036 (1094)
T PLN02436        957 GLLKVLAGVNTNFTVTSKAADDGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVI 1036 (1094)
T ss_pred             HHHHHhccCcccceecccccccccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence            99999999999999999988776778999999999999999999999999999999999988889999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHhheeEecCCCCCCCccccccCCCCC
Q 001382         1032 LHLYPFLKGFLGKQDRLPTILLVWAILLASIFSLLWARVNPFVSKGDIVLEVCGLDCN 1089 (1089)
Q Consensus      1032 ~~l~Pfl~gL~gR~~~~P~~v~~~s~~la~~f~~l~v~~~~~~~~~~~~~~~~~~~~~ 1089 (1089)
                      +|+|||++|||||++|+||||++||++||++||||||+||||++++||++++|||||+
T Consensus      1037 v~lyPf~kgL~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1094 (1094)
T PLN02436       1037 VHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVSKGGPVLEICGLDCD 1094 (1094)
T ss_pred             HHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeeccccCCCCccccccCccCC
Confidence            9999999999999999999999999999999999999999999999999999999996

>PLN02400 cellulose synthase	Back alignment and domain information

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit	Back alignment and domain information

>PLN02189 cellulose synthase	Back alignment and domain information

>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit	Back alignment and domain information

>PLN02195 cellulose synthase A	Back alignment and domain information

>PLN02248 cellulose synthase-like protein	Back alignment and domain information

>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals	Back alignment and domain information

>PLN02190 cellulose synthase-like protein	Back alignment and domain information

>PLN02893 Cellulose synthase-like protein	Back alignment and domain information

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)	Back alignment and domain information

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional	Back alignment and domain information

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A	Back alignment and domain information

>PRK05454 glucosyltransferase MdoH; Provisional	Back alignment and domain information

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan	Back alignment and domain information

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK14583 hmsR N-glycosyltransferase; Provisional	Back alignment and domain information

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111	Back alignment and domain information

>PRK11204 N-glycosyltransferase; Provisional	Back alignment and domain information

>PRK14716 bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex	Back alignment and domain information

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily	Back alignment and domain information

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase	Back alignment and domain information

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A	Back alignment and domain information

>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis	Back alignment and domain information

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan	Back alignment and domain information

>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	Back alignment and domain information

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB	Back alignment and domain information

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan	Back alignment and domain information

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2	Back alignment and domain information

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine	Back alignment and domain information

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis	Back alignment and domain information

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis	Back alignment and domain information

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis	Back alignment and domain information

>PF13506 Glyco_transf_21: Glycosyl transferase family 21	Back alignment and domain information

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis	Back alignment and domain information

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans	Back alignment and domain information

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function	Back alignment and domain information

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase	Back alignment and domain information

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2	Back alignment and domain information

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase	Back alignment and domain information

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily	Back alignment and domain information

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase	Back alignment and domain information

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine	Back alignment and domain information

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1	Back alignment and domain information

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation	Back alignment and domain information

>PRK10073 putative glycosyl transferase; Provisional	Back alignment and domain information

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	Back alignment and domain information

>PRK10018 putative glycosyl transferase; Provisional	Back alignment and domain information

>TIGR01556 rhamnosyltran L-rhamnosyltransferase	Back alignment and domain information

>PRK10063 putative glycosyl transferase; Provisional	Back alignment and domain information

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	Back alignment and domain information

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1	Back alignment and domain information

>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]	Back alignment and domain information

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional	Back alignment and domain information

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional	Back alignment and domain information

>COG1216 Predicted glycosyltransferases [General function prediction only]	Back alignment and domain information

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional	Back alignment and domain information

>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	Back alignment and domain information

>COG5175 MOT2 Transcriptional repressor [Transcription]	Back alignment and domain information

>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides	Back alignment and domain information

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1089
1weo_A		93	Solution Structure Of Ring-Finger In The Catalytic		7e-28
4hg6_A		802	Structure Of A Cellulose Synthase - Cellulose Trans		5e-06

>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic Subunit (Irx3) Of Cellulose Synthase Length = 93

Back alignment and structure

Iteration: 1

Score = 122 bits (307), Expect = 7e-28, Method: Composition-based stats. Identities = 49/67 (73%), Positives = 56/67 (83%) Query: 31 VKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 +K L GQ C+ICGD+I +T G+ FVACNEC FP CRPCYEYERREG Q CPQCKTRYKR Sbjct: 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 Query: 91 IKGSPRV 97 ++GSPRV Sbjct: 71 LRGSPRV 77

PyMOL of 1weo

>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate Length = 802

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1089
1weo_A		93	Cellulose synthase, catalytic subunit (IRX3); stru	4e-42
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	4e-09
3vk6_A		101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	6e-04

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Length = 93	Back alignment and structure

 Score =  147 bits (373), Expect = 4e-42
 Identities = 55/83 (66%), Positives = 66/83 (79%)

Query: 30  SVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89
            +K L GQ C+ICGD+I +T  G+ FVACNEC FP CRPCYEYERREG Q CPQCKTRYK
Sbjct: 10  PLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69

Query: 90  RIKGSPRVDGDEEEDDTDDLENE 112
           R++GSPRV+GDE+E+D D   + 
Sbjct: 70  RLRGSPRVEGDEDEEDIDSGPSS 92

PyMOL of 1weo

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78	Back alignment and structure

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1089
4hg6_A		802	Cellulose synthase subunit A; membrane translocati	100.0
1weo_A		93	Cellulose synthase, catalytic subunit (IRX3); stru	100.0
2z86_A		625	Chondroitin synthase; GT-A, glycosyltransferase A,	99.48
1xhb_A		472	Polypeptide N-acetylgalactosaminyltransferase 1; g	99.42
2d7i_A		570	Polypeptide N-acetylgalactosaminyltransferase 10;	99.35
1qg8_A		255	Protein (spore coat polysaccharide biosynthesis P	99.34
3bcv_A		240	Putative glycosyltransferase protein; protein stru	99.34
2ffu_A		501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	99.33
2z86_A		625	Chondroitin synthase; GT-A, glycosyltransferase A,	99.17
4fix_A		657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	98.81
3ckj_A		329	Putative uncharacterized protein; mycobacteria, un	98.79
3l7i_A		729	Teichoic acid biosynthesis protein F; GT-B fold, m	98.76
2fy7_A		287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	98.43
3f1y_A		387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	97.96
2nxv_A		249	ATP synthase subunits region ORF 6; majastridin, A	97.61
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	96.63
1fo8_A		343	Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl	95.86
2bo4_A		397	Mannosylglycerate synthase; catalysis, glycosyltra	94.32
2zu9_A		394	Mannosyl-3-phosphoglycerate synthase; GT-A fold, g	92.09
1vyx_A		60	ORF K3, K3RING; zinc-binding protein, ring domain,	89.84
2d8s_A		80	Cellular modulator of immune recognition; C-MIR, m	88.72
2ea6_A		69	Ring finger protein 4; RNF4, RES4-26, ring domain,	87.72
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	86.42
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	86.27
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	85.93
2wvl_A		391	Mannosyl-3-phosphoglycerate synthase; GT-A fold, t	85.3
2ect_A		78	Ring finger protein 126; metal binding protein, st	84.68
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	84.36
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	84.26
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	83.82
2csz_A		76	Synaptotagmin-like protein 4; exophilin 2, granuph	81.94
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	81.8
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	81.25
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	81.03
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	80.23
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	80.12

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}	Back alignment and structure

Probab=100.00  E-value=1.2e-50  Score=499.91  Aligned_cols=492  Identities=23%  Similarity=0.354  Sum_probs=377.9

Q ss_pred             hHH-HHHHHHHHHHHhhhhhccccccc-----hhhHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhHhhhhhccCCC
Q 001382          288 YRL-IILLRLVILGLFFHYRILHPVND-----AYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGK  361 (1089)
Q Consensus       288 yR~-~~~~~l~~l~~yl~wRi~~~~~~-----a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pi~R~~~~drL~~r~~~~~~  361 (1089)
                      .|+ ++++.+++.++|++||++.+++.     ++++|++++++|+++.+.|++..+..|+|..|...++         ..
T Consensus        65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~~  135 (802)
T 4hg6_A           65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------LQ  135 (802)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------CC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---------CC
Confidence            455 56677777899999999987653     2467888999999999999999999999998875432         23


Q ss_pred             CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCchhhhHHHHhhhHHHhhhhhhhhhhcCCCCC
Q 001382          362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR  441 (1089)
Q Consensus       362 ~~~lP~VDvfV~T~dP~kEPp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ltf~al~Eaa~FA~~WvPFCkk~~Iepr  441 (1089)
                      ++++|.|+|+|||||   |++.++.+|+.|++++|||.+++.|+|+|||+++-|.+.                       
T Consensus       136 ~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~-----------------------  189 (802)
T 4hg6_A          136 PEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS-----------------------  189 (802)
T ss_dssp             TTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred             ccCCCcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-----------------------
Confidence            567999999999998   999999999999999999999999999999999865431                       


Q ss_pred             CchhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcCccccCCCCCCCCCCCCCCcchhhhhccC
Q 001382          442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ  521 (1089)
Q Consensus       442 ~Pe~YFs~~~d~~~~~~~~~f~~err~~kreYee~k~rI~~l~~~~~~~p~~~w~m~dg~~w~~~~~rdHp~iiqv~l~~  521 (1089)
                                      ..|+.+++..       +-...++.++++                                   
T Consensus       190 ----------------~d~~i~~~~~-------~~~~~l~~~~~~-----------------------------------  211 (802)
T 4hg6_A          190 ----------------PDPELAQKAQ-------ERRRELQQLCRE-----------------------------------  211 (802)
T ss_dssp             ----------------SSHHHHHHHH-------HHHHHHHHHHHH-----------------------------------
T ss_pred             ----------------CCHHHHHHHH-------hhhHHHHHHHHh-----------------------------------
Confidence                            1122222211       111122223210                                   


Q ss_pred             CCCccccCCccCcEEEEeccCCCCCCCCCchhhhHHHHHhhccccCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCc
Q 001382          522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGK  600 (1089)
Q Consensus       522 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSa~~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~  600 (1089)
                                 .++.|+.|++    +++.||||+|.+++.    ++++||+++|||++ +.|++|++++.+| .||    
T Consensus       212 -----------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp----  267 (802)
T 4hg6_A          212 -----------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDP----  267 (802)
T ss_dssp             -----------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----
T ss_pred             -----------cCcEEEEecC----CCCcchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHHhcCC----
Confidence                       0378899987    677999999999996    69999999999998 6999999999988 588    


Q ss_pred             eEEEEecCccccCCCcc-------ccccchhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcCCC
Q 001382          601 KICYVQFPQRFDGIDRH-------DRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNC  673 (1089)
Q Consensus       601 ~v~~VQ~PQ~F~nid~~-------D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~  673 (1089)
                      ++++||+|+.+.|.++.       .++.+++..||....++.+.+++++++|++++|||+++                  
T Consensus       268 ~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al------------------  329 (802)
T 4hg6_A          268 DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRAL------------------  329 (802)
T ss_dssp             SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHH------------------
T ss_pred             CeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHH------------------
Confidence            79999999999987742       44567788999999999999999999999999999887                  


Q ss_pred             CCCcccccccccccccccCCCccCCcchhhhhhhhhhhhhccccccccCchhHHHhhhcCCchHHHHHHhHhhCCCCCCC
Q 001382          674 LPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGA  753 (1089)
Q Consensus       674 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~  753 (1089)
                                                                                            ++.||+++  
T Consensus       330 ----------------------------------------------------------------------~~vGgf~~--  337 (802)
T 4hg6_A          330 ----------------------------------------------------------------------DEAGGFAG--  337 (802)
T ss_dssp             ----------------------------------------------------------------------HHHTTCCC--
T ss_pred             ----------------------------------------------------------------------HHcCCcCC--
Confidence                                                                                  24677654  


Q ss_pred             ChhhHHHHhHHhhcccccccCccccccCcccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHhhheec
Q 001382          754 STASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWA  833 (1089)
Q Consensus       754 ~~~~~~~ea~~v~sc~YE~~T~WG~evGW~ygSvTEDi~Tg~rLh~rGWrsvY~~p~~~Af~G~aP~tl~~~l~QR~RWA  833 (1089)
                                                     ++++||.+++++++.+||+++|+ |+..+ ++.+|+++.++++||.||+
T Consensus       338 -------------------------------~~~~ED~~l~~rl~~~G~ri~~~-~~~~~-~~~~p~t~~~~~~Qr~RW~  384 (802)
T 4hg6_A          338 -------------------------------ETITEDAETALEIHSRGWKSLYI-DRAMI-AGLQPETFASFIQQRGRWA  384 (802)
T ss_dssp             -------------------------------SSSSHHHHHHHHHHTTTCCEEEC-CCCCE-EECCCCSHHHHHHHHHHHH
T ss_pred             -------------------------------CCcchHHHHHHHHHHcCCeEEEe-cCCEE-EecCCCCHHHHHHHHHHHH
Confidence                                           57889999999999999999999 44444 8999999999999999999


Q ss_pred             chhhHHHHhhccccccccCCCCCcccchhhhhhhhhHhHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHH-HHHHHH
Q 001382          834 LGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEISNYASILFM-ALFISI  912 (1089)
Q Consensus       834 ~G~lQIl~sk~~Pl~~g~~k~L~~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~ivp~~s~~~~i~fi-~lfls~  912 (1089)
                      +|.+|+++. ++|++   .+++++.+|+.|+...++++.+++.++++++|+++++++..++......++.+++ ++++.+
T Consensus       385 ~G~~q~l~~-~~pl~---~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l~~~  460 (802)
T 4hg6_A          385 TGMMQMLLL-KNPLF---RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAVSF  460 (802)
T ss_dssp             HHHHHHHHH-SCTTS---CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHH-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHHHH
Confidence            999999985 57886   6889999999999999999999999999999999999999887764433222222 222222


Q ss_pred             HHHHHHHhhccCCcccccccchhhhhhhhhHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCCcccceeeccccchHHHH
Q 001382          913 AATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALIQGLLKVVGGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPL  992 (1089)
Q Consensus       913 ~~~~lLe~~wsG~s~~~wWrne~~W~I~~~sa~l~Av~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~L~iP~~  992 (1089)
                      .+..++   +.+.. ..|| ++.++.+.+. ..+.+++.++   +++++.+|.||+|+...+..     +-+ .++.|++
T Consensus       461 ~~~~~~---~~~~r-~~~~-~~l~~~~~~~-~~~~a~l~~l---~~~~~~~f~VT~Kg~~~~~~-----~~~-~~~~p~~  525 (802)
T 4hg6_A          461 LVQNAL---FARQR-WPLV-SEVYEVAQAP-YLARAIVTTL---LRPRSARFAVTAKDETLSEN-----YIS-PIYRPLL  525 (802)
T ss_dssp             HHHHHH---HTTTS-CTTH-HHHHHHHHHH-HHHHHHHHHH---HSTTCCCCCCCCCCCCCSSC-----CBC-TTCHHHH
T ss_pred             HHHHHH---hcCcH-HHHH-HHHHHHHHHH-HHHHHHHHHH---hCCCCCcceECCCCcccccc-----chh-hHHHHHH
Confidence            222222   11111 1233 3444433221 1123333333   35688999999998764332     113 4788999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 001382          993 TLLVFNLIGVIIGVADAISNGYETWGPLFGKLFFSLWVILHLYPFLKGFL 1042 (1089)
Q Consensus       993 ~Llilnliaiv~Gi~r~i~~~~~~wg~l~g~l~~~~Wvl~~l~Pfl~gL~ 1042 (1089)
                      ++++++++++++|+++......    +..+.+++++|+++|++.+.-++.
T Consensus       526 ~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~l~~l~~~~~  571 (802)
T 4hg6_A          526 FTFLLCLSGVLATLVRWVAFPG----DRSVLLVVGGWAVLNVLLVGFALR  571 (802)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhccCC----ccchhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999998875432    345678999999999999988884

PyMOL of 4hg6

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1	Back alignment and structure

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*	Back alignment and structure

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17	Back alignment and structure

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*	Back alignment and structure

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*	Back alignment and structure

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}	Back alignment and structure

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*	Back alignment and structure

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*	Back alignment and structure

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*	Back alignment and structure

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A	Back alignment and structure

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*	Back alignment and structure

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...	Back alignment and structure

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*	Back alignment and structure

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B	Back alignment and structure

>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*	Back alignment and structure

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*	Back alignment and structure

>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*	Back alignment and structure

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3	Back alignment and structure

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*	Back alignment and structure

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1089
d1weoa_		93	g.44.1.1 (A:) Cellulose synthase A catalytic subun	4e-48
d1g25a_		65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	2e-04

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93	Back information, alignment and structure


class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  163 bits (415), Expect = 4e-48
 Identities = 55/79 (69%), Positives = 65/79 (82%)

Query: 30  SVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89
            +K L GQ C+ICGD+I +T  G+ FVACNEC FP CRPCYEYERREG Q CPQCKTRYK
Sbjct: 10  PLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69

Query: 90  RIKGSPRVDGDEEEDDTDD 108
           R++GSPRV+GDE+E+D D 
Sbjct: 70  RLRGSPRVEGDEDEEDIDS 88

PyMOL of d1weoa_

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1089
d1weoa_		93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	100.0
d1xhba2		328	Polypeptide N-acetylgalactosaminyltransferase 1, N	99.43
d1qg8a_		255	Spore coat polysaccharide biosynthesis protein Sps	98.91
d1omza_		265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	98.52
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	96.09
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	95.38
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	94.65
d2bo4a1		381	Mannosylglycerate synthase, MGS {Rhodothermus mari	93.96
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	90.57

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.3e-46  Score=330.20  Aligned_cols=86  Identities=64%  Similarity=1.307  Sum_probs=82.4

Q ss_pred             ccccccccccccCCccccccCccccccCCCCccccCCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCCCCCCC
Q 001382           23 DEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEE  102 (1089)
Q Consensus        23 ~~~~~~~~~~~~~~~~C~iCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~e  102 (1089)
                      +++..+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+||++
T Consensus         3 ~g~~g~kp~~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gDe~   82 (93)
T d1weoa_           3 SGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDED   82 (93)
T ss_dssp             CSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCC
T ss_pred             CCCCCCCChhhcccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhhhcCCCCCCCCcc
Confidence            44566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccc
Q 001382          103 EDDTDD  108 (1089)
Q Consensus       103 e~~~dd  108 (1089)
                      |||+||
T Consensus        83 e~~~d~   88 (93)
T d1weoa_          83 EEDIDS   88 (93)
T ss_dssp             CCCSCC
T ss_pred             cccccc
Confidence            998886

PyMOL of d1weoa_

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure