Citrus Sinensis ID: 001403

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080----

MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG

ccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHcccCECccccCEEEHHHHHHcccHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccccccccCEEECcccccCEEECcccccCEECcccccccEEccccccccCEEECccccccCECccccCEEECcccccCECccccccEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEECccccccccccccEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccEEEccccccEEEEEEcccccEEEEEcccccccEEEEEcccccEEEEcccccccEEEEEEEEcccccEEEEEEccccEEEEEccccccEEEEccccccEEEEEEcccccEEEEECcccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEECccccEEEEcccccccEEEEEECccccccccccEEEccccccEEEEEccccccEEEEEEEccccEEEEEEEcccEEEEEECccccCEEEEEccccccEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEECccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEECccccEEEEEcccccEEEECccccccccEEccccccEEEEEccccEEEEEEcccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEEccccccccccccccCCcEEEEECcccccEEEEECccccEEEEcccccccccccccccccccccccccccccccccc

**KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQ*****GQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL**********************

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Topless-related protein 1	Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.	probable	Q0WV90

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2YMU, chain A
Confidence level:very confident
Coverage over the Query: 326-653,724-759,783-1051
View the alignment between query and template
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Template: 2YMU, chain A
Confidence level:very confident
Coverage over the Query: 295-653,724-758,782-998
View the alignment between query and template
View the model in PyMOL

Template: 3FM0, chain A
Confidence level:very confident
Coverage over the Query: 725-760,783-1054
View the alignment between query and template
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Template: 1ERJ, chain A
Confidence level:very confident
Coverage over the Query: 386-670,687-709
View the alignment between query and template
View the model in PyMOL

Template: 2OAJ, chain A
Confidence level:confident
Coverage over the Query: 384-674,687-739,751-759,778-1057
View the alignment between query and template
View the model in PyMOL

Template: 2PM9, chain A
Confidence level:confident
Coverage over the Query: 335-651,672-709
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Template: 2OIT, chain A
Confidence level:confident
Coverage over the Query: 794-1077
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View the model in PyMOL

Template: 1UUJ, chain A
Confidence level:probable
Coverage over the Query: 5-60
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID	Alignment Graph	Confidence Level	View Alignment and Template
Query
3ei3, chain A		probable	Alignment \| Template Structure